Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008202.1 Hibiscus syriacus cultivar Beakdansim tig00110822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53961

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--64
13
2.3
14
94
5
55
22
29
32
16
1.95
34--64
7
4.6
7
92
8
55
22
29
32
16
1.95
55--94
17
2.4
17
91
0
62
20
25
37
17
1.94
88--158
19
3.7
20
84
5
92
26
28
25
19
1.99
90--158
9
7.1
10
73
12
63
27
28
23
20
1.99
4530--4570
17
2.4
17
95
0
73
17
41
24
17
1.89
4560--4589
7
4.4
7
91
8
53
16
30
30
23
1.96
4560--4589
13
2.2
14
94
5
53
16
30
30
23
1.96
8397--8427
13
2.3
14
94
5
55
22
29
32
16
1.95
8397--8427
7
4.6
7
92
8
55
22
29
32
16
1.95
8418--8457
17
2.4
17
91
0
62
20
25
37
17
1.94
8451--8521
19
3.7
20
84
5
92
26
28
25
19
1.99
8453--8521
9
7.1
10
73
12
63
27
28
23
20
1.99
12952--12981
7
4.4
7
91
8
53
16
30
30
23
1.96
12952--12977
13
2.0
13
100
0
52
15
30
30
23
1.95
16823--16873
13
3.8
13
97
2
93
23
29
31
15
1.95
16823--16873
7
7.6
7
91
8
88
23
29
31
15
1.95
16823--16873
20
2.5
21
90
9
88
23
29
31
15
1.95
16864--16903
17
2.4
17
91
0
62
20
25
37
17
1.94
21347--21387
17
2.4
17
95
0
73
17
41
24
17
1.89
21377--21413
7
5.4
7
93
6
67
16
29
29
24
1.96
21377--21409
13
2.5
13
95
5
57
15
30
30
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22799--22837
17
2.3
17
81
0
51
30
2
5
61
1.31
28586--28645
10
6.1
10
79
11
61
20
23
30
26
1.98
28641--28683
17
2.4
18
88
7
61
16
39
25
18
1.91
28649--28676
12
2.3
12
100
0
56
17
42
25
14
1.87
28654--28702
7
7.4
7
77
13
59
18
30
28
22
1.97
28654--28702
20
2.5
19
90
3
71
18
30
28
22
1.97
36883--36912
13
2.2
14
94
5
53
23
30
30
16
1.96
36883--36912
7
4.4
7
91
8
53
23
30
30
16
1.96
36902--36942
17
2.4
17
95
0
73
17
24
41
17
1.89
36936--37006
19
3.7
20
88
5
101
26
29
25
18
1.98
36938--37006
9
7.1
10
76
12
72
27
30
23
18
1.98
37870--37903
2
17.0
2
100
0
68
0
50
0
50
1.00
41899--41927
15
1.9
15
100
0
58
13
34
17
34
1.89
44718--44753
5
7.2
5
87
0
54
77
2
2
16
1.00
44718--44759
15
2.7
15
81
3
57
76
2
4
16
1.07
45051--45220
30
5.7
30
71
6
114
58
10
11
19
1.60
45051--45153
30
3.5
30
82
1
118
60
9
10
19
1.57
50270--50333
27
2.4
27
91
0
101
17
56
12
14
1.68

Tables:   1

The End!