Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008203.1 Hibiscus syriacus cultivar Beakdansim tig00110824_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117312

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5991--6048
17
3.4
17
97
0
107
17
43
24
15
1.87
6038--6074
7
5.4
7
93
6
67
16
29
29
24
1.96
6038--6070
13
2.5
13
95
5
57
15
30
30
24
1.95
12990--13032
13
3.2
13
96
3
77
23
30
30
16
1.96
12990--13032
7
6.4
7
89
10
72
23
30
30
16
1.96
12994--13032
20
2.0
19
95
5
69
23
30
30
15
1.95
13022--13062
17
2.4
17
95
0
73
17
24
41
17
1.89
13056--13146
20
4.7
19
80
9
94
26
28
24
20
1.99
13058--13146
9
9.1
10
70
14
69
26
29
22
21
1.99
13056--13146
39
2.3
39
81
3
103
26
28
24
20
1.99
14027--14052
2
13.0
2
100
0
52
0
50
0
50
1.00
15534--15585
27
1.9
27
88
0
77
19
11
25
44
1.84
18107--18135
15
1.9
15
100
0
58
13
34
17
34
1.89
21275--21445
30
5.7
30
71
8
107
59
9
11
19
1.59
21265--21380
60
1.9
59
81
6
135
59
7
11
21
1.56
22214--22268
19
2.9
18
76
23
51
1
12
10
74
1.15
22755--22809
9
5.6
10
80
18
62
67
1
1
29
1.11
22767--22808
3
14.0
3
89
0
66
64
2
2
30
1.19
34555--34826
132
2.0
133
86
6
372
30
12
9
46
1.74
37011--37036
13
2.0
13
100
0
52
61
0
0
38
0.96
38229--38267
2
19.5
2
94
0
69
48
2
0
48
1.15
39353--39387
2
17.5
2
100
0
70
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55192--55272
35
2.3
36
91
2
128
40
25
2
30
1.69
55209--55288
36
2.3
34
85
8
106
41
30
2
26
1.69
55773--56051
148
1.9
149
91
0
461
50
8
6
35
1.58
56021--56105
27
3.1
27
89
3
127
52
16
9
21
1.71
60636--60696
6
10.2
6
96
0
95
29
49
16
4
1.66
60694--60747
5
10.8
5
93
0
72
16
37
40
5
1.72
66601--66661
6
10.2
6
96
0
104
31
49
16
3
1.62
66659--66712
5
10.8
5
93
0
72
16
37
40
5
1.72
72574--72634
6
10.2
6
96
0
104
31
49
16
3
1.62
72632--72685
5
10.8
5
93
0
72
16
37
40
5
1.72
73929--73977
6
8.2
6
100
0
98
34
32
0
32
1.58
73974--74076
6
17.2
6
97
0
197
33
49
16
0
1.52
74074--74127
5
10.8
5
93
0
90
20
37
40
1
1.63
76076--76133
28
2.0
29
86
3
82
37
0
6
55
1.27
78393--78458
27
2.4
27
97
2
123
43
24
18
13
1.86
93156--93269
3
37.0
3
83
5
129
28
5
1
64
1.26
96419--96453
9
3.8
9
92
3
52
37
20
11
31
1.88
105219--105858
323
2.0
317
90
4
1000
38
13
23
25
1.91
115374--115549
94
1.8
98
83
8
236
17
9
32
40
1.81
115363--115563
31
6.4
31
73
19
141
16
9
34
39
1.82

Tables:   1

The End!