genome.fa.s8204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008204.1 Hibiscus syriacus cultivar Beakdansim tig00110826_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64041

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624--10675	20	2.6	20	96	0	95	38	26	13	21	1.90
10666--10763	21	4.8	20	71	6	70	35	21	20	22	1.96
10731--10924	20	9.6	20	76	8	76	35	25	19	19	1.95
10727--10924	40	5.0	39	81	4	200	35	26	19	19	1.95
10731--10923	60	3.2	60	83	0	251	35	25	19	19	1.95
11301--11370	33	2.2	32	89	2	104	11	22	18	47	1.81
11491--11559	33	2.2	31	89	5	102	43	26	21	8	1.81
11577--11666	14	5.7	14	72	23	72	10	26	24	38	1.87
11555--11667	19	6.8	18	70	23	70	10	25	23	40	1.86
11560--11674	33	3.5	33	90	0	185	10	25	21	42	1.84
13365--13926	92	6.1	93	98	1	1078	22	12	18	46	1.83
13365--13926	185	3.0	186	97	1	1078	22	12	18	46	1.83
13970--14092	19	6.9	19	73	18	113	46	28	17	8	1.76
14006--14092	33	2.7	32	91	5	138	47	27	18	6	1.74
14098--14226	19	7.3	19	75	15	109	11	17	24	46	1.81
14115--14170	14	3.7	14	80	17	67	10	21	23	44	1.83
14098--14189	32	2.8	33	90	3	150	11	19	21	46	1.82
16139--16173	13	2.6	14	90	4	54	31	0	22	45	1.53
16280--16381	19	5.6	19	84	13	151	44	17	23	14	1.86
16409--16696	19	16.4	19	78	17	338	14	20	18	46	1.83
16409--16696	33	8.2	35	83	13	241	14	20	18	46	1.83
16388--16696	52	5.9	52	78	15	265	14	21	18	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18979--19003	12	2.1	12	100	0	50	0	28	0	72	0.86
19178--19224	24	2.0	24	87	8	69	38	21	14	25	1.92
19903--20271	20	18.5	20	86	4	458	20	18	26	34	1.96
20644--20710	7	9.6	7	100	0	134	13	43	14	28	1.84
21087--21145	23	2.5	24	72	5	59	38	5	0	55	1.22
21344--21402	30	2.0	29	83	9	75	45	3	1	49	1.28
24819--25192	183	2.0	184	92	1	626	42	3	8	45	1.50
25198--25231	9	3.7	9	96	4	59	23	8	17	50	1.74
25294--25338	14	2.9	16	77	16	58	40	24	13	22	1.90
25629--25679	25	2.0	25	85	7	68	27	35	11	25	1.91
25731--25779	23	2.1	23	96	0	89	28	20	20	30	1.98
29802--29946	60	2.4	60	97	0	272	38	14	13	33	1.86
31975--32043	7	9.9	7	100	0	138	43	14	14	27	1.84
35159--35183	4	6.2	4	100	0	50	48	0	0	52	1.00
35732--35844	60	1.9	60	81	3	138	37	14	13	35	1.85
36389--36415	14	1.9	14	100	0	54	29	22	3	44	1.70
36882--36917	2	18.5	2	94	5	65	50	0	0	50	1.00
38204--38270	31	2.2	31	100	0	134	41	14	16	26	1.87
38117--38247	60	2.2	60	79	2	156	34	14	19	32	1.92
40664--40718	21	2.8	20	75	10	51	54	14	1	29	1.50
40720--40782	19	3.2	19	75	4	54	55	12	0	31	1.37
40685--40882	64	2.8	68	80	14	208	58	12	1	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44738--44991	127	2.0	126	96	0	463	26	14	15	43	1.85
47568--48324	4	187.8	4	84	3	948	25	6	23	44	1.76
49703--49815	60	1.9	60	90	3	183	32	22	4	40	1.74
49944--50102	60	2.7	60	79	5	162	42	8	18	30	1.80
50410--50477	29	2.4	28	82	2	73	51	0	8	39	1.33
50416--50477	28	2.2	29	82	2	72	53	0	8	38	1.31
52803--52835	15	2.1	16	94	5	59	33	0	0	66	0.92
59418--59637	108	2.0	108	96	0	404	33	10	28	27	1.90
60841--60973	68	2.0	68	93	3	232	28	15	12	44	1.82

Tables:   1

The End!