genome.fa.s8205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008205.1 Hibiscus syriacus cultivar Beakdansim tig00110827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89261

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8085--8163	41	1.9	41	89	0	122	37	8	18	34	1.82
10022--10108	35	2.5	34	80	12	97	55	10	8	26	1.61
20156--20250	49	2.0	48	91	2	154	44	10	17	27	1.82
28543--28596	20	2.7	20	97	0	99	37	18	20	24	1.94
31732--31765	18	1.9	17	94	5	59	55	23	2	17	1.55
31822--32104	140	2.0	140	95	0	512	28	13	14	44	1.82
32075--32171	20	4.8	20	93	0	158	29	21	19	28	1.98
33781--33886	21	5.0	21	76	7	81	28	19	32	19	1.97
34394--34461	20	3.4	20	82	8	84	36	23	19	20	1.95
34467--34520	19	2.8	19	88	0	72	48	24	16	11	1.79
34525--34562	20	1.9	20	94	0	67	13	21	18	47	1.82
34542--34574	14	2.4	14	94	0	57	12	18	21	48	1.80
34575--34649	20	3.8	19	80	7	87	20	20	22	37	1.94
34556--34668	40	2.9	38	72	7	109	18	17	22	41	1.90
36559--36624	19	3.4	20	85	6	91	50	24	16	9	1.74
37014--37064	22	2.3	22	96	0	93	19	11	45	23	1.83
37272--37312	21	2.0	21	90	0	64	29	17	26	26	1.97
42309--42368	20	3.0	20	69	16	54	48	0	0	51	1.00
43574--43601	14	2.0	14	100	0	56	35	7	7	50	1.57
47133--47229	49	2.0	49	88	8	144	23	29	26	19	1.98
49041--49074	9	3.9	9	84	7	52	61	2	0	35	1.11
49030--49075	17	2.8	17	93	3	76	63	4	0	32	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50280--50338	29	2.0	29	100	0	118	23	13	13	49	1.78
54926--54984	29	2.0	29	100	0	118	23	13	13	49	1.78
63380--63423	20	2.1	21	95	4	81	25	29	29	15	1.96
63413--63487	17	4.4	17	98	0	141	14	24	44	17	1.86
63380--63423	7	6.4	7	94	5	81	25	29	29	15	1.96
63483--63532	9	5.1	10	74	13	50	28	30	22	20	1.98
63481--63532	20	2.7	19	87	3	68	26	28	25	19	1.98
69732--69813	31	2.6	31	80	1	92	24	31	29	14	1.95
70685--70747	13	5.0	13	81	12	78	23	28	31	15	1.96
70681--70747	20	3.5	19	84	9	84	23	28	31	16	1.96
70721--70794	17	4.4	17	96	0	121	17	24	40	17	1.91
70681--70731	7	7.6	7	86	8	79	27	29	27	15	1.96
70811--70848	20	1.9	20	94	0	67	34	26	21	18	1.96
70804--70847	9	4.7	9	83	10	61	31	29	22	15	1.95
74471--74523	23	2.3	23	83	6	63	3	15	9	71	1.26
75526--75585	28	2.2	27	84	3	75	46	8	3	41	1.50
76109--76240	59	2.2	60	86	4	187	26	25	8	40	1.84
78496--78533	13	3.0	12	88	11	58	73	0	2	23	0.95
79666--80227	207	2.7	208	87	4	805	22	17	26	33	1.96
79676--80227	105	5.3	105	90	3	823	22	17	26	33	1.96
80829--80982	63	2.4	61	79	8	164	36	8	22	32	1.84
81084--81216	37	3.6	37	90	2	196	39	11	19	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81636--81671	18	2.0	18	88	0	54	41	30	8	19	1.81
82063--82117	22	2.5	22	96	0	101	23	12	25	38	1.90
82728--82780	13	4.2	12	80	4	61	0	9	5	84	0.76
82717--82770	24	2.3	25	84	9	69	0	14	7	77	0.97
82728--82785	8	7.2	8	80	16	59	0	10	5	84	0.77
82734--82785	11	5.1	10	76	19	54	0	9	5	84	0.77
82758--82799	16	2.6	16	81	7	50	2	16	4	76	1.07
82719--82794	31	2.4	33	79	18	90	0	15	6	77	0.96
82728--82787	15	3.9	15	76	22	54	0	11	6	81	0.86
83950--83988	8	5.0	8	84	6	53	58	12	17	10	1.61
83950--83988	15	2.5	15	87	4	51	58	12	17	10	1.61
85357--85385	5	5.8	5	100	0	58	82	0	0	17	0.66
86490--86522	13	2.6	13	90	4	50	78	0	3	18	0.87
86999--87041	18	2.5	17	81	7	52	69	2	2	25	1.12
87001--87039	14	2.8	13	88	11	51	71	2	2	23	1.10
88181--88222	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1

The End!