genome.fa.s8207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008207.1 Hibiscus syriacus cultivar Beakdansim tig00110829_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135326

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3958--3990	15	2.2	15	89	10	50	57	12	3	27	1.49
6017--6063	10	4.6	10	91	2	76	34	0	0	65	0.93
6315--6371	29	2.0	30	83	10	75	31	1	1	64	1.13
6453--6525	31	2.3	33	83	7	96	42	4	0	53	1.20
6677--6769	29	3.2	29	80	8	100	63	3	2	31	1.22
7630--8116	21	23.0	21	74	15	325	20	20	23	35	1.96
7630--8037	42	9.8	41	86	6	434	20	19	24	36	1.95
7655--8116	126	3.8	126	85	7	545	20	19	23	36	1.95
8008--8065	28	2.1	28	96	0	107	18	22	20	37	1.94
7966--8107	70	2.0	70	94	0	248	19	21	23	36	1.95
8206--8244	6	6.5	6	100	0	78	33	51	15	0	1.44
9010--9080	21	3.4	20	75	14	72	38	25	18	18	1.93
9049--9106	30	2.0	28	83	6	71	39	20	17	22	1.92
9102--9154	21	2.5	21	93	0	88	16	20	32	30	1.95
12839--12937	41	2.4	41	81	3	101	28	15	21	35	1.93
13255--13313	21	2.8	21	92	0	91	50	20	6	22	1.71
15930--16026	41	2.4	41	89	0	149	36	16	16	30	1.91
16590--16622	17	1.9	17	93	0	57	24	21	12	42	1.86
16699--16788	21	4.1	22	75	16	89	28	28	20	22	1.98
27874--27954	20	3.9	20	75	9	63	27	34	23	14	1.94
33268--33309	21	2.0	21	95	0	75	23	21	28	26	1.99
35447--35569	21	5.8	21	78	12	108	31	27	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35438--35569	44	3.1	43	80	7	153	31	26	18	22	1.97
36402--36479	19	3.9	20	76	15	72	28	29	11	30	1.92
37239--37379	40	3.5	40	83	4	158	38	14	17	29	1.89
37254--37379	40	3.1	41	86	3	173	37	12	18	31	1.88
37791--37868	31	2.5	31	85	0	111	39	8	11	39	1.73
41523--41589	31	2.2	31	86	0	89	34	8	20	35	1.84
46471--46533	2	31.5	2	93	0	108	50	3	0	46	1.17
47212--47298	31	2.8	31	85	1	104	25	17	22	34	1.96
47244--47339	30	3.2	30	85	2	104	17	19	27	35	1.95
58606--58776	46	3.8	45	91	3	256	38	7	21	32	1.82
59176--59241	33	2.0	33	93	0	114	24	24	21	30	1.99
62563--62685	41	3.0	41	96	0	219	40	14	15	29	1.87
64147--64214	21	3.2	21	85	0	91	22	22	17	38	1.93
64210--64258	20	2.5	20	86	0	71	38	26	14	20	1.91
64250--64416	20	8.4	20	86	5	221	44	25	12	17	1.84
64250--64437	60	3.1	60	85	3	227	43	24	13	19	1.86
64205--64456	60	4.2	60	79	9	223	42	23	13	21	1.87
64420--64457	19	2.0	19	100	0	76	36	15	10	36	1.82
65421--65474	24	2.2	24	93	0	90	20	18	20	40	1.91
67734--67769	18	2.0	18	94	0	63	55	25	2	16	1.55
68151--68214	20	3.1	21	77	8	69	21	20	14	43	1.87
68262--68437	66	2.6	65	89	8	257	52	17	2	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69787--69885	21	4.7	21	74	8	85	23	19	34	23	1.97
69779--69885	42	2.5	42	79	10	119	23	17	36	22	1.95
72434--72491	22	2.6	22	88	0	89	17	13	44	24	1.85
72600--72746	20	7.3	20	81	9	156	18	13	24	43	1.86
72596--72746	60	2.5	60	84	5	198	17	14	24	43	1.87
72596--72774	60	3.0	61	78	8	161	19	14	24	41	1.88
72761--72814	20	2.7	20	97	0	99	29	5	33	31	1.80
72754--72828	20	3.7	19	84	8	78	26	10	32	30	1.90
76115--76185	26	2.8	25	77	10	72	29	1	28	40	1.65
76135--76186	26	2.0	26	88	7	79	30	0	28	40	1.57
79068--79174	43	2.5	43	98	0	205	45	12	11	30	1.76
79157--79212	18	3.0	19	89	10	89	62	14	7	16	1.52
81104--81151	22	2.2	22	96	0	87	41	20	8	29	1.81
81935--81982	22	2.2	22	96	0	87	41	20	8	29	1.81
82767--82814	22	2.2	22	96	0	87	41	20	8	29	1.81
80759--83255	832	3.0	832	99	0	4987	36	21	11	30	1.89
83354--83379	11	2.4	11	100	0	52	38	15	0	46	1.46
92460--92538	23	3.7	22	85	8	92	24	31	26	17	1.97
92460--92521	23	2.7	23	92	2	99	22	32	25	19	1.97
92503--92545	19	2.3	19	83	0	50	23	27	32	16	1.96
101047--101093	23	2.0	23	100	0	94	38	12	4	44	1.62
110356--110386	12	2.6	12	94	0	53	45	19	19	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112689--112728	21	1.9	21	94	0	71	30	15	7	47	1.72
112723--112821	33	3.0	33	94	1	164	32	7	15	45	1.73
112807--112861	13	4.2	13	75	13	58	34	3	12	49	1.59
113248--113294	15	3.0	15	79	11	58	29	12	12	44	1.80
113258--113291	18	1.9	18	94	5	61	38	11	11	38	1.79
113385--113416	16	2.0	17	88	11	50	43	21	21	12	1.86
125633--125699	26	2.5	26	81	13	75	65	1	1	31	1.10
125633--125699	13	5.2	13	73	20	61	65	1	1	31	1.10
126101--126193	43	2.2	42	78	7	98	38	21	17	22	1.93
133326--133355	15	2.0	15	93	0	51	23	13	20	43	1.86

Tables:   1

The End!