Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008208.1 Hibiscus syriacus cultivar Beakdansim tig00110830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2533913
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 8
Found at i:2267308 original size:36 final size:36
Alignment explanation
Indices: 2267268--2267372 Score: 174
Period size: 36 Copynumber: 2.9 Consensus size: 36
2267258 AACACCATCT
2267268 TCCATCTCCATTATCACGCCTATATCATCACCATAG
1 TCCATCTCCATTATCACGCCTATATCATCACCATAG
* * *
2267304 TCCATCACCATTATCACGCCTTTATCATCACTATAG
1 TCCATCTCCATTATCACGCCTATATCATCACCATAG
*
2267340 TCCATCTCCATTATCACGCCTATATTATCACCA
1 TCCATCTCCATTATCACGCCTATATCATCACCA
2267373 ACTTATAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.28, C:0.35, G:0.05, T:0.32
Consensus pattern (36 bp):
TCCATCTCCATTATCACGCCTATATCATCACCATAG
Found at i:2271372 original size:36 final size:36
Alignment explanation
Indices: 2271332--2271436 Score: 165
Period size: 36 Copynumber: 2.9 Consensus size: 36
2271322 AACACCATCT
2271332 TCCATCTCCATTATCACGCCTATATCATCACCATAG
1 TCCATCTCCATTATCACGCCTATATCATCACCATAG
* * * *
2271368 TCCATCACCATTTTCACGCCTTTATCATCACTATAG
1 TCCATCTCCATTATCACGCCTATATCATCACCATAG
*
2271404 TCCATCTCCATTATCACGCCTATATTATCACCA
1 TCCATCTCCATTATCACGCCTATATCATCACCA
2271437 ACTTATAAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.27, C:0.35, G:0.05, T:0.33
Consensus pattern (36 bp):
TCCATCTCCATTATCACGCCTATATCATCACCATAG
Found at i:2276991 original size:12 final size:12
Alignment explanation
Indices: 2276979--2277013 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
2276969 AAGCAACAAG
2276979 AAAGAAGAAAAGA
1 AAAG-AGAAAAGA
2276992 AAAGAGAAAAGA
1 AAAGAGAAAAGA
2277004 AAAGA-AAAAG
1 AAAGAGAAAAG
2277014 TCTCCTACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 5 0.23
12 13 0.59
13 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAGAGAAAAGA
Found at i:2281702 original size:24 final size:24
Alignment explanation
Indices: 2281675--2281726 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
2281665 GACATGTCCT
* * *
2281675 TTGACGTTCCAACAGTTATGCCAC
1 TTGACGTTCAAAAAGATATGCCAC
* *
2281699 TTGATGTTCAAAAAGATGTGCCAC
1 TTGACGTTCAAAAAGATATGCCAC
2281723 TTGA
1 TTGA
2281727 AGTGCCAAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
TTGACGTTCAAAAAGATATGCCAC
Found at i:2286213 original size:21 final size:22
Alignment explanation
Indices: 2286180--2286221 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
2286170 CACCCTCTTT
*
2286180 AAATTTTTCTTTTCTTTTTTTC
1 AAATTTTTCTTTTATTTTTTTC
2286202 AAATTTTT-TTTTATTTTTTT
1 AAATTTTTCTTTTATTTTTTT
2286222 ATTTTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (22 bp):
AAATTTTTCTTTTATTTTTTTC
Found at i:2290671 original size:18 final size:18
Alignment explanation
Indices: 2290629--2290674 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
2290619 TAGTTTGATT
*
2290629 AATGAAATAACATTATTC
1 AATGAACTAACATTATTC
*
2290647 AATGAACTAACTTTATTC
1 AATGAACTAACATTATTC
2290665 AATGAACTAA
1 AATGAACTAA
2290675 ATGCATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (18 bp):
AATGAACTAACATTATTC
Found at i:2312437 original size:19 final size:20
Alignment explanation
Indices: 2312390--2312440 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
2312380 GAAACCCCTT
**
2312390 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
2312410 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
2312429 TGAAGATACATG
1 TGAAAATACATG
2312441 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:2316442 original size:19 final size:20
Alignment explanation
Indices: 2316395--2316445 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
2316385 GAAACCCCTT
**
2316395 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTAAA
2316415 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
2316434 TGAAGATACATG
1 TGAAAATACATG
2316446 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:2318114 original size:2 final size:2
Alignment explanation
Indices: 2318042--2318106 Score: 123
Period size: 2 Copynumber: 33.0 Consensus size: 2
2318032 TAACTATAGG
2318042 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2318083 TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
2318107 AAATATATGA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 61 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2320261 original size:919 final size:920
Alignment explanation
Indices: 2318137--2320906 Score: 4930
Period size: 919 Copynumber: 3.0 Consensus size: 920
2318127 GATCACATCA
* * * * *
2318137 ACCACCAACAGAAATTGAAGGAGAAGCCGAAATTGGTGCT-TCCGTGGTAGGTGAATCCCTAGTG
1 ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCT-TGTGGAAGGTGAAGCCCTAGTG
* * * * * *
2318201 GTTAAAAGAAGTCTAAGTGCTCAAGTGGTAGGGGACAATGCACAATGGGAAAATATATTTCATAC
65 GTTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATAC
* * *
2318266 CCGCTGCCATGAGAATGAAAAGGTGTGTTTCATGATCATAGACGGTGGATGTTGTACCAATGTGG
130 CCGCTGCCATGAGAAAGAAAAGGTGTGTTTCATGATCATAGATGGTGGAAGTTGTACCAATGTGG
*
2318331 CAAGTACCATTATGGTGGAGAAATTAGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTA
195 CAAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTA
* * * * *
2318396 CAATGTCTAAATGAACGAGGAGAACTTAATGTCAACAAACAAGTGATGGTTCATTTCTCAATTGG
260 TAATGTCTAAATGAACGAGGAGATCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGG
*
2318461 TAAGTACAAGGACGAGGTTATCTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAA
325 TAAGTACAAGGACGAGGTTATGTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAA
2318526 TCCATCAATTTGGATAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGAGCAACTATTGAAAAG
390 TCCATCAATTTGGATAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGAGCAACTATTGAAAAG
* *
2318591 CAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGCAATGATCCGAGTCAATATTGAGGAG
455 CAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGACAATGATCCGAGTTAATATTGAGGAG
2318656 GATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAATCCTGATATTGCCAACATACTAGA
520 GATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAATCCTGATATTGCCAACATACTAGA
2318721 GTTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATTAC
585 GTTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATTAC
2318786 GGAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGTCT
650 GGAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGTCT
2318851 ACTCCTATCAAGGAAAAGGCTGAATCATC---TACTTCTCAACCCGTCAAGGATATTCGAGGAAA
715 ACTCCTATCAAGGAAAAGGCTGAATCATCAAATACTTCTCAACCCGTCAAGGATATTCGAGGAAA
*
2318913 ACAGATCCCTGAATGATCAAGATACATCCAATGTTTTACATGTCTTGGGAGGGGTCATGTATCCA
780 ACAGATCCCTGAATGATCAAGATACATCCGATGTTTTACATGTCTTGGGAGGGGTCATGTATCCA
2318978 CACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATCTAACCATGAA
845 CACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATCTAACCATGAA
2319043 GAAGAAGAAAC
910 GAAGAAGAAAC
*
2319054 ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCCTGTGGAAGGTGAAGCCCTAGTGG
1 ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCTTGTGGAAGGTGAAGCCCTAGTGG
2319119 TTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATACC
66 TTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATACC
* *
2319184 CGTTGCCATGAGAAAGAAAAGGTGTGTTTTATGATCATAGATGGTGGAAGTTGTACCAATGTGGC
131 CGCTGCCATGAGAAAGAAAAGGTGTGTTTCATGATCATAGATGGTGGAAGTTGTACCAATGTGGC
2319249 AAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTAT
196 AAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTAT
2319314 AATGTCTAAATGAACGAGGAGATCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGGT
261 AATGTCTAAATGAACGAGGAGATCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGGT
2319379 AAGTACAAGGACG-GGTTATGTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAAT
326 AAGTACAAGGACGAGGTTATGTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAAT
2319443 CCATCAATTTGGATAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGAGCAACTATTGAAAAGC
391 CCATCAATTTGGATAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGAGCAACTATTGAAAAGC
2319508 AAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGACAATGATCCGAGTTAATATTGAGGAGG
456 AAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGACAATGATCCGAGTTAATATTGAGGAGG
2319573 ATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAATCCTGATATTGCCAACATACTAGAG
521 ATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAATCCTGATATTGCCAACATACTAGAG
2319638 TTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATTACG
586 TTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATTACG
2319703 GAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGTCTA
651 GAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGTCTA
2319768 CTCCTATCAAGGAAAAGGCTGAATCATCAAATACTTCTCAACCCGTCAAGGATATTCGAGGAAAA
716 CTCCTATCAAGGAAAAGGCTGAATCATCAAATACTTCTCAACCCGTCAAGGATATTCGAGGAAAA
2319833 CAGATCCCTGAATGATCAAGATACATCCGATGTTTTACATGTCTTGGGAGGGGTCATGTATCCAC
781 CAGATCCCTGAATGATCAAGATACATCCGATGTTTTACATGTCTTGGGAGGGGTCATGTATCCAC
*
2319898 ACAATGTCCCAACCGAAACACCATATTACTACTTGGAAATGGTGAGATTGAATCTAACCATGAAG
846 ACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATCTAACCATGAAG
2319963 AAGAAGAAAC
911 AAGAAGAAAC
2319973 ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCTTGTGGAAGGTGAAGCCCTAGTGG
1 ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCTTGTGGAAGGTGAAGCCCTAGTGG
2320038 TTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATACC
66 TTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATACC
2320103 CGCTGCCATGAGAAAGAAAAGGTGTGTTTCATGATCATAGATGGTGGAAGTTGTACCAATGTGGC
131 CGCTGCCATGAGAAAGAAAAGGTGTGTTTCATGATCATAGATGGTGGAAGTTGTACCAATGTGGC
2320168 AAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTAT
196 AAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTAT
*
2320233 AATGTCTAAATGAACGAGGAGTTCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGGT
261 AATGTCTAAATGAACGAGGAGATCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGGT
*
2320298 AAGTACAAGGACGAGGTTATGTGCGATGTTGTTCCTATGCATGCTAGCCATTTACTCCTTGGAAT
326 AAGTACAAGGACGAGGTTATGTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAAT
*
2320363 CCATCAATTTGG-TGAACTAAAGGATGTGACTTTTTAAAAA-CAAGGAGGTGCAACTATTGAAAA
391 CCATCAATTTGGAT-AACTAAAGGATGTGACTTTTTAAAAACCAA-GAGGAGCAACTATTGAAAA
2320426 GCAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGA-AATGATCCGAGTTAATATTGAGG
454 GCAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGT-GACAATGATCCGAGTTAATATTGAGG
* * * *
2320490 AGGATCGGGAAGTAACCATGGTTAGATTTCTTGCTGGACTCAATCCCT-AGATTGCCAACATACT
518 AGGATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAAT-CCTGATATTGCCAACATACT
* *
2320554 AGAGTTGTACCATTACATAGAACTTGATGAAATGATGCAAATGGTTATGAAAATAGAGAGGCAAT
582 AGAGTTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAAT
* *
2320619 TACGAAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTAAAGAAG
647 TACGGAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAG
* * *
2320684 TCTACTCCTACTCCTATCAAGGAAAAGG-TCGGATCATCAAATACTTCTTAGCCCGTCAAGGATA
712 -----T-CTACTCCTATCAAGGAAAAGGCT-GAATCATCAAATACTTCTCAACCCGTCAAGGATA
* * * *
2320748 TTCGAGGAAAACATATCCCTAAACGATCAAGAGACATCCGATGTTTTACATGTCTTGGGAGGGGT
770 TTCGAGGAAAACAGATCCCTGAATGATCAAGATACATCCGATGTTTTACATGTCTTGGGAGGGGT
*
2320813 CATGTATCCACACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTAAGATTGAATC
835 CATGTATCCACACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATC
*
2320878 TGACCATGAAGAAGAAGAAAC
900 TAACCATGAAGAAGAAGAAAC
2320899 ACCACCAA
1 ACCACCAA
2320907 TAGAAATTTG
Statistics
Matches: 1785, Mismatches: 52, Indels: 23
0.96 0.03 0.01
Matches are distributed among these distances:
916 401 0.22
917 314 0.18
919 510 0.29
920 349 0.20
921 5 0.00
925 2 0.00
926 204 0.11
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (920 bp):
ACCACCAACATAAATTGTAGGAGAAGCCGAAATTGGTGCTCTTGTGGAAGGTGAAGCCCTAGTGG
TTAAAAGAAGTATAAGTGCTAAAGTGGTAGAGGACAATGCACAACGGGAAAACATCTTTCATACC
CGCTGCCATGAGAAAGAAAAGGTGTGTTTCATGATCATAGATGGTGGAAGTTGTACCAATGTGGC
AAGTACCATTATGGTGGAGAAATTGGGATTAAAAATGTTGAAGCACCCAAATCCCTACAAATTAT
AATGTCTAAATGAACGAGGAGATCTTAAAGTCAACAAACAGGTGATGGTTCCTTTCTCAATTGGT
AAGTACAAGGACGAGGTTATGTGCGATGTTGTTCCTATGCATACTAGCCATTTACTCCTTGGAAT
CCATCAATTTGGATAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGAGCAACTATTGAAAAGC
AAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGACAATGATCCGAGTTAATATTGAGGAGG
ATCGGGAAGTAACCATGGCTAGATTTCTTGTTGTACTCAATCCTGATATTGCCAACATACTAGAG
TTGTTCCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATTACG
GAGAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGTCTA
CTCCTATCAAGGAAAAGGCTGAATCATCAAATACTTCTCAACCCGTCAAGGATATTCGAGGAAAA
CAGATCCCTGAATGATCAAGATACATCCGATGTTTTACATGTCTTGGGAGGGGTCATGTATCCAC
ACAATGTCCCAACCGAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATCTAACCATGAAG
AAGAAGAAAC
Found at i:2322168 original size:11 final size:11
Alignment explanation
Indices: 2322152--2322180 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
2322142 TTTTTTTTTT
2322152 CAAAAAAAAAA
1 CAAAAAAAAAA
2322163 CAAAAAAAAAA
1 CAAAAAAAAAA
2322174 CAAAAAA
1 CAAAAAA
2322181 GGCAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:2322189 original size:30 final size:30
Alignment explanation
Indices: 2322152--2322210 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
2322142 TTTTTTTTTT
*
2322152 CAAAAAAAAAACAAAAAAAAAACAAAAAAGG
1 CAAAAAAAAAA-GAAAAAAAAACAAAAAAGG
**
2322183 CAAAAAAAAAAGGCAAAAAAACAAAAAA
1 CAAAAAAAAAAGAAAAAAAAACAAAAAA
2322211 AAGAGCCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (30 bp):
CAAAAAAAAAAGAAAAAAAAACAAAAAAGG
Found at i:2322221 original size:20 final size:19
Alignment explanation
Indices: 2322157--2322223 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
2322147 TTTTTCAAAA
*
2322157 AAAAAACAAAAAAAAA-AC
1 AAAAAACAAAAAAAAAGCC
*
2322175 AAAAAAGGCAAAAAAAAAAGGCA
1 AAAAAA--C-AAAAAAAAA-GCC
2322198 AAAAAACAAAAAAAAGAGCC
1 AAAAAACAAAAAAAA-AGCC
2322218 AAAAAA
1 AAAAAA
2322224 GCCAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
18 6 0.15
20 17 0.43
21 11 0.28
23 6 0.15
ACGTcount: A:0.81, C:0.10, G:0.09, T:0.00
Consensus pattern (19 bp):
AAAAAACAAAAAAAAAGCC
Found at i:2322230 original size:21 final size:21
Alignment explanation
Indices: 2322156--2322230 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
2322146 TTTTTTCAAA
*
2322156 AAAAAAACAAAAAAAAAA--C
1 AAAAAAGCAAAAAAAAAAGCC
*
2322175 AAAAAAGGCAAAAAAAAAAGGC
1 AAAAAA-GCAAAAAAAAAAGCC
* *
2322197 AAAAAAACAAAAAAAAGAGCC
1 AAAAAAGCAAAAAAAAAAGCC
*
2322218 AAAAAAGCCAAAA
1 AAAAAAGCAAAAA
2322231 TTTCAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 6 0.13
20 11 0.23
21 23 0.49
22 7 0.15
ACGTcount: A:0.79, C:0.12, G:0.09, T:0.00
Consensus pattern (21 bp):
AAAAAAGCAAAAAAAAAAGCC
Found at i:2326101 original size:42 final size:44
Alignment explanation
Indices: 2326009--2326108 Score: 107
Period size: 49 Copynumber: 2.2 Consensus size: 44
2325999 AGGATCAGAT
*
2326009 TTATTATTTATTAGGAATTAAGGTTGGGTTAAAACAATATTTTTAGTTA
1 TTATTATTTATTAGGAATTAA-G--GGGTTAAAAC-A-ATGTTTAGTTA
2326058 TTATTATTTATTAGGAATT-A-GGGTTAAAAC-ATGTTTAGTTTA
1 TTATTATTTATTAGGAATTAAGGGGTTAAAACAATGTTTAG-TTA
*
2326100 TTAATATTT
1 TTATTATTT
2326109 TATCTTTAGT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
41 7 0.15
42 11 0.23
44 10 0.21
48 1 0.02
49 19 0.40
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (44 bp):
TTATTATTTATTAGGAATTAAGGGGTTAAAACAATGTTTAGTTA
Found at i:2330402 original size:148 final size:152
Alignment explanation
Indices: 2330137--2330434 Score: 552
Period size: 149 Copynumber: 2.0 Consensus size: 152
2330127 AGGTACTTCT
2330137 GCGATCCTTTGTTTAGAATGGAGTTTGTTTTCGGAAAGTAATAGGTTCTTGCTTCCATTTGGTGG
1 GCGATCCTTTGTTTAGAATGGAGTTTGTTTTCGGAAAGTAATAGGTTCTTGCTTCCATTTGGTGG
2330202 CCGAATTTGGACTGCTCCTAGTGTAGGATTTCCTTTTGAGTTGTCTTTCAA-TTTCATGG-C-CA
66 CCGAATTTGGACTGCTCCTAGTGTAGGATTTCCTTTTGAGTTGTCTTTCAATTTTCATGGCCACA
2330264 TGCACCATTTCTTCAATCTCTGC
131 TGCACCATTTCTTC-ATCTCTGC
2330287 GCGATCCTTTG-TTAGAATGGAGTTTGTTTTCGGAAAGTAATAGGTTCTTGCTTCCATTTGGT-G
1 GCGATCCTTTGTTTAGAATGGAGTTTGTTTTCGGAAAGTAATAGGTTCTTGCTTCCATTTGGTGG
2330350 CCGAATTTGGACTGCTCCTAGTGTAGGATTTCCTTTTGAGTTGTCTTTCAATTTTCATGGCCACA
66 CCGAATTTGGACTGCTCCTAGTGTAGGATTTCCTTTTGAGTTGTCTTTCAATTTTCATGGCCACA
2330415 TGCACCATTTCTTCATCTCT
131 TGCACCATTTCTTCATCTCT
2330435 ACATATGCTG
Statistics
Matches: 145, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
148 52 0.36
149 59 0.41
150 18 0.12
151 16 0.11
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.41
Consensus pattern (152 bp):
GCGATCCTTTGTTTAGAATGGAGTTTGTTTTCGGAAAGTAATAGGTTCTTGCTTCCATTTGGTGG
CCGAATTTGGACTGCTCCTAGTGTAGGATTTCCTTTTGAGTTGTCTTTCAATTTTCATGGCCACA
TGCACCATTTCTTCATCTCTGC
Found at i:2333939 original size:24 final size:24
Alignment explanation
Indices: 2333901--2333947 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
2333891 AACTAAAGGA
* * *
2333901 TGTGACTTTTTAAAAGCCAAGAGG
1 TGTGACTATTGAAAAGCAAAGAGG
2333925 TGTGACTATTGAAAAGCAAAGAG
1 TGTGACTATTGAAAAGCAAAGAG
2333948 TGTAGAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (24 bp):
TGTGACTATTGAAAAGCAAAGAGG
Found at i:2334739 original size:926 final size:926
Alignment explanation
Indices: 2332948--2334797 Score: 3213
Period size: 926 Copynumber: 2.0 Consensus size: 926
2332938 CAAGCAACAC
*
2332948 AATCCATCAATTTTGTGAACTAAAGTATGTGACTTTTTAAAAACCAAGAGGTGCGACTATTGAAA
1 AATCCATCAATTTTGTGAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGTGCGACTATTGAAA
* *
2333013 AGAAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGAAATGATCTGAGTCAATATTGAGG
66 AGAAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGAAATGATCCGAGTCAACATTGAGG
*
2333078 AGGATCGTGAAGCAACCATGGCTAGATTTCTTGCTAGACTCAATCCCGAGATTGCCAACATACTA
131 AGGATCGTGAAGCAACCATGGCTAGATTTCTTGCTAGACTCAATCCAGAGATTGCCAACATACTA
2333143 GAGTTATACCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATT
196 GAGTTATACCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATT
*
2333208 ACGGAGAAGATCTATATCTAACACTACCATGCCTTCAAGATGGAGTCCTAACAATTTGAAGAAGT
261 ACGGAGAAGATCTATATCTAACACTACCATGCCTTCAAGATGGAGTCCTAACAATTTAAAGAAGT
* *
2333273 CTACTCCTACTCCTATCAAGGAAAAGGTTGAATCATCAAATGCTTCTCAACCCGTCAAGGATATT
326 ATACTCCTACTCCTATCAAGGAAAAGGTCGAATCATCAAATGCTTCTCAACCCGTCAAGGATATT
*
2333338 CGAGGAAAAGAGATCCCTGAACGATCAAGAGACATCCGGTGTTTTACATGTCTTGGGAGGGGTCA
391 CGAGGAAAAGAGATCCCTGAACGATCAAGAGACATCCGATGTTTTACATGTCTTGGGAGGGGTCA
*
2333403 TGTATCCACACAATGTCCCAACCAAAACACCATGTTACTACTTGGAAATGGTGAGATTGAATCTA
456 TGTATCCACACAATGTCCCAACCAAAACACCATGTTACTACTTGGAAACGGTGAGATTGAATCTA
* *
2333468 ACCATGAAGAAGAAGAAACACCACCAACAGAAATTGAAGGAGAAGCCGAAATTGGTGCTCCCGTG
521 ACCATGAAGAAGAAGAAACACCACCAACAGAAATTGAAGGAGAAGCCGAAATTGGGGCTCCAGTG
* * *
2333533 GAAGGTGAAGCCCTAATGATTAAAAGAAGTATAAGTGTTCAAGTGGTAGAGGACAGTGCACAATG
586 GAAGGTGAAGCCCTAATGATTAAAAGAAGTATAAGTGCTCAAGTGGTAGAGGACAATGCACAACG
* * *
2333598 GGAAAGCATCTTTCATACCCGCTGCCATGTGAATGAAAAGGTGCGTTTCATGATCATAGACGGTG
651 GGAAAACATCTGTCATACCCGCTGCCATGTGAATGAAAAGGTGCGTTTCATGATCATAGACGGTC
2333663 GAAGTTGTACCAATGTGGCAAGTACCATTATGGTGGAGAAATTGGGATTAAAAACGTTGAAGCAC
716 GAAGTTGTACCAATGTGGCAAGTACCATTATGGTGGAGAAATTGGGATTAAAAACGTTGAAGCAC
2333728 CCAAATCCCTACAAATTACAATGACTAAATGAACGAGGAGAACTTAATGTCAACAAACAGGTGAT
781 CCAAATCCCTACAAATTACAATGACTAAATGAACGAGGAGAACTTAATGTCAACAAACAGGTGAT
2333793 GGTTCCTTTCTCAATTGGTAAGTACAAGGACGAGGTT-TGATGCAATATTGTTCCTATGCATGCT
846 GGTTCCTTTCTCAATTGGTAAGTACAAGGACGAGGTTATG-TGCAATATTGTTCCTATGCATGCT
2333857 AGCCATTTACTCCTTAG
910 AGCCATTTACTCCTTAG
* *
2333874 AATCCATCAA-TTTGATGAACTAAAGGATGTGACTTTTTAAAAGCCAAGAGGTGTGACTATTGAA
1 AATCCATCAATTTTG-TGAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGTGCGACTATTGAA
* *
2333938 AAGCAAAGAGTGTAGAGGATTATTATAAGGAGATGGAAGTGGAAATGATCCGAGTCAACATTGAG
65 AAGAAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGAAATGATCCGAGTCAACATTGAG
* * * * *
2334003 GAGGATCGTGAAGCAACCATGGTTAGATTTCTTGCTGGACTTAATCTAGAGATTGCCAACATAGT
130 GAGGATCGTGAAGCAACCATGGCTAGATTTCTTGCTAGACTCAATCCAGAGATTGCCAACATACT
* *
2334068 TGAGTTGTACCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAAT
195 AGAGTTATACCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAAT
* **
2334133 TACGGATAAGATCTATATCTCGCACTACCATGCCTTCAAGATGGAGTCCTAACAATTTAAAGAAG
260 TACGGAGAAGATCTATATCTAACACTACCATGCCTTCAAGATGGAGTCCTAACAATTTAAAGAAG
*
2334198 TATACTCCTACTCTTATCAAGGAAAAGGTCGAATCATCAAATGCTTCTCAACCCGTCAAGGATAT
325 TATACTCCTACTCCTATCAAGGAAAAGGTCGAATCATCAAATGCTTCTCAACCCGTCAAGGATAT
*
2334263 TCGAGGAAAAGAGATCCCTGAATGATCAAGAGACATCCGATGTTTTACATGTCTTGGGAGGGGTC
390 TCGAGGAAAAGAGATCCCTGAACGATCAAGAGACATCCGATGTTTTACATGTCTTGGGAGGGGTC
** *
2334328 ATGTATCCACACAATGTCCCAACTGAAACACCATGTTTCTACTTGGAAACGGTGAGATTGAATCT
455 ATGTATCCACACAATGTCCCAACCAAAACACCATGTTACTACTTGGAAACGGTGAGATTGAATCT
* *
2334393 GACCATGAAGAAGAAGAAACACCACCAATAGAAATTGAAGGAGAAGCCGAAATTGGGGCTCCAGT
520 AACCATGAAGAAGAAGAAACACCACCAACAGAAATTGAAGGAGAAGCCGAAATTGGGGCTCCAGT
* * * *
2334458 GGAAGGTGAAGCCCTAGTGGTTAAAAGAAGTCTAAGTGCTCAAGTGGTAGAGGACAATGCATAAC
585 GGAAGGTGAAGCCCTAATGATTAAAAGAAGTATAAGTGCTCAAGTGGTAGAGGACAATGCACAAC
*
2334523 GGGAAAACATCTGTCATACCCGTTGCCATGTGAATGAAAAGGT-CTGTTTCATGATCATAGACGG
650 GGGAAAACATCTGTCATACCCGCTGCCATGTGAATGAAAAGGTGC-GTTTCATGATCATAGACGG
2334587 TCGAAGTTGTACCAATGTGGCAAGTACCATTATGGTGGAGAAATTGGGATTAAAAACGTTGAAGC
714 TCGAAGTTGTACCAATGTGGCAAGTACCATTATGGTGGAGAAATTGGGATTAAAAACGTTGAAGC
*
2334652 ACCCAAATCCCTACAAATTACAAT-ATCTAAATGAACGAGGATAACTTAATGTCAACAAACAGGT
779 ACCCAAATCCCTACAAATTACAATGA-CTAAATGAACGAGGAGAACTTAATGTCAACAAACAGGT
* * *
2334716 GATGGTTCCTTTCTCAATTGGTAAGTACAAGGATGAGGTTATGTGCGATGTTGTTCCTATGCATG
843 GATGGTTCCTTTCTCAATTGGTAAGTACAAGGACGAGGTTATGTGCAATATTGTTCCTATGCATG
2334781 CTAGCCATTTACTCCTT
908 CTAGCCATTTACTCCTT
2334798 GGAAGACCAT
Statistics
Matches: 873, Mismatches: 47, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
925 6 0.01
926 865 0.99
927 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (926 bp):
AATCCATCAATTTTGTGAACTAAAGGATGTGACTTTTTAAAAACCAAGAGGTGCGACTATTGAAA
AGAAAAGAGTGTAGAGGATTATTATAAGGAAATGGAAGTGGAAATGATCCGAGTCAACATTGAGG
AGGATCGTGAAGCAACCATGGCTAGATTTCTTGCTAGACTCAATCCAGAGATTGCCAACATACTA
GAGTTATACCATTACATAGAACTTGATGAAATGATGCAAATGGCTATGAAAATAGAGAGGCAATT
ACGGAGAAGATCTATATCTAACACTACCATGCCTTCAAGATGGAGTCCTAACAATTTAAAGAAGT
ATACTCCTACTCCTATCAAGGAAAAGGTCGAATCATCAAATGCTTCTCAACCCGTCAAGGATATT
CGAGGAAAAGAGATCCCTGAACGATCAAGAGACATCCGATGTTTTACATGTCTTGGGAGGGGTCA
TGTATCCACACAATGTCCCAACCAAAACACCATGTTACTACTTGGAAACGGTGAGATTGAATCTA
ACCATGAAGAAGAAGAAACACCACCAACAGAAATTGAAGGAGAAGCCGAAATTGGGGCTCCAGTG
GAAGGTGAAGCCCTAATGATTAAAAGAAGTATAAGTGCTCAAGTGGTAGAGGACAATGCACAACG
GGAAAACATCTGTCATACCCGCTGCCATGTGAATGAAAAGGTGCGTTTCATGATCATAGACGGTC
GAAGTTGTACCAATGTGGCAAGTACCATTATGGTGGAGAAATTGGGATTAAAAACGTTGAAGCAC
CCAAATCCCTACAAATTACAATGACTAAATGAACGAGGAGAACTTAATGTCAACAAACAGGTGAT
GGTTCCTTTCTCAATTGGTAAGTACAAGGACGAGGTTATGTGCAATATTGTTCCTATGCATGCTA
GCCATTTACTCCTTAG
Found at i:2342934 original size:11 final size:13
Alignment explanation
Indices: 2342902--2342931 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2342892 TGGCCAAAGA
2342902 TGAAAAGGTATGT
1 TGAAAAGGTATGT
2342915 TGAAAAGGTATG-
1 TGAAAAGGTATGT
2342927 TGAAA
1 TGAAA
2342932 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:2348426 original size:13 final size:13
Alignment explanation
Indices: 2348404--2348433 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2348394 ACTAAACACC
2348404 TTTC-ACATACCT
1 TTTCAACATACCT
2348416 TTTCAACATACCT
1 TTTCAACATACCT
2348429 TTTCA
1 TTTCA
2348434 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:2354090 original size:19 final size:18
Alignment explanation
Indices: 2354045--2354088 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
2354035 CCAAGAGCAT
* *
2354045 TTATCTTCATTAAAATTA
1 TTATTTTCATTAAAATCA
2354063 TTATTTTCATTAAAAATCA
1 TTATTTTCATT-AAAATCA
2354082 TGTATTT
1 T-TATTT
2354089 CAAAGGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (18 bp):
TTATTTTCATTAAAATCA
Found at i:2362153 original size:19 final size:19
Alignment explanation
Indices: 2362091--2362150 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
2362081 TTGGAGTGCA
* *
2362091 AAAAGAAGACAAAAATTAG
1 AAAAGAAGAGAAAAATAAG
2362110 AAAAGAAGAGAAAAATAAG
1 AAAAGAAGAGAAAAATAAG
2362129 AAAAGAAGA-AAAGAA-AAG
1 AAAAGAAGAGAAA-AATAAG
2362147 AAAA
1 AAAA
2362151 AGAGAAGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 10 0.26
19 28 0.74
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (19 bp):
AAAAGAAGAGAAAAATAAG
Found at i:2367760 original size:19 final size:19
Alignment explanation
Indices: 2367698--2367757 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
2367688 TTGGAGTGCA
* *
2367698 AAAAGAAGACAAAAATCAG
1 AAAAGAAGAGAAAAATAAG
2367717 AAAAGAAGAGAAAAATAAG
1 AAAAGAAGAGAAAAATAAG
2367736 AAAAGAAGA-AAAGAA-AAG
1 AAAAGAAGAGAAA-AATAAG
2367754 AAAA
1 AAAA
2367758 AGAGAAGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 10 0.26
19 28 0.74
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
AAAAGAAGAGAAAAATAAG
Found at i:2373360 original size:19 final size:19
Alignment explanation
Indices: 2373298--2373357 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
2373288 TTGGAGTGCA
* *
2373298 AAAAGAAGACAAAAATCAG
1 AAAAGAAGAGAAAAATAAG
2373317 AAAAGAAGAGAAAAATAAG
1 AAAAGAAGAGAAAAATAAG
2373336 AAAAGAAGA-AAAGAA-AAG
1 AAAAGAAGAGAAA-AATAAG
2373354 AAAA
1 AAAA
2373358 AGAGAAGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 10 0.26
19 28 0.74
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
AAAAGAAGAGAAAAATAAG
Found at i:2379052 original size:25 final size:25
Alignment explanation
Indices: 2378998--2379055 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
2378988 GATAGGGTAA
*
2378998 TGAAGAACTCCCTTAGAAACAACTT
1 TGAATAACTCCCTTAGAAACAACTT
2379023 TGAATAACTCCCTTAGAAACAACTT
1 TGAATAACTCCCTTAGAAACAACTT
2379048 TGAATAAC
1 TGAATAAC
2379056 ATCCATGGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.26
Consensus pattern (25 bp):
TGAATAACTCCCTTAGAAACAACTT
Found at i:2385254 original size:19 final size:19
Alignment explanation
Indices: 2385192--2385251 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
2385182 TTGGAGTGCA
* *
2385192 AAAAGAAGACAAAAATCAG
1 AAAAGAAGAGAAAAATAAG
2385211 AAAAGAAGAGAAAAATAAG
1 AAAAGAAGAGAAAAATAAG
2385230 AAAAGAAGA-AAAGAA-AAG
1 AAAAGAAGAGAAA-AATAAG
2385248 AAAA
1 AAAA
2385252 AGAGAAGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 10 0.26
19 28 0.74
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
AAAAGAAGAGAAAAATAAG
Found at i:2391787 original size:13 final size:12
Alignment explanation
Indices: 2391764--2391825 Score: 51
Period size: 13 Copynumber: 5.2 Consensus size: 12
2391754 TGATATATAC
2391764 ATGAA-ATGGTG
1 ATGAATATGGTG
2391775 ATGGAATATGGTG
1 AT-GAATATGGTG
*
2391788 ATG-ATATAGG-C
1 ATGAATAT-GGTG
2391799 ATGAA-ATGGTG
1 ATGAATATGGTG
*
2391810 ATAGAAGATGGTG
1 AT-GAATATGGTG
2391823 ATG
1 ATG
2391826 GAGAAATAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
10 2 0.05
11 13 0.31
12 11 0.26
13 16 0.38
ACGTcount: A:0.35, C:0.02, G:0.35, T:0.27
Consensus pattern (12 bp):
ATGAATATGGTG
Found at i:2391789 original size:35 final size:35
Alignment explanation
Indices: 2391746--2391825 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 35
2391736 ATGGTTAAGG
* *
2391746 GATGGTGATGATATATACATGAAATGGTGATGGAA
1 GATGGTGATGATATAGACATGAAATGGTGATAGAA
* *
2391781 TATGGTGATGATATAGGCATGAAATGGTGATAGAA
1 GATGGTGATGATATAGACATGAAATGGTGATAGAA
2391816 GATGGTGATG
1 GATGGTGATG
2391826 GAGAAATAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.34, T:0.29
Consensus pattern (35 bp):
GATGGTGATGATATAGACATGAAATGGTGATAGAA
Found at i:2398399 original size:19 final size:20
Alignment explanation
Indices: 2398352--2398402 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
2398342 GAAACCCCTT
**
2398352 TGAAAATACATGATTTTTTA
1 TGAAAATACATGATTTTAAA
2398372 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
2398391 TGAAGATACATG
1 TGAAAATACATG
2398403 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:2401570 original size:13 final size:13
Alignment explanation
Indices: 2401552--2401615 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
2401542 TAGGCATGAA
2401552 ATGGTGATGGAAG
1 ATGGTGATGGAAG
*
2401565 ATGGTGAT-G-AT
1 ATGGTGATGGAAG
*
2401576 ATAGGCG-T-GAA-
1 AT-GGTGATGGAAG
2401587 ATGGTGATGGAAG
1 ATGGTGATGGAAG
2401600 ATGGTGATGGATAG
1 ATGGTGATGGA-AG
2401614 AT
1 AT
2401616 AATATCTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
10 3 0.07
11 8 0.19
12 8 0.19
13 19 0.45
14 4 0.10
ACGTcount: A:0.31, C:0.02, G:0.41, T:0.27
Consensus pattern (13 bp):
ATGGTGATGGAAG
Found at i:2401571 original size:35 final size:35
Alignment explanation
Indices: 2401529--2401608 Score: 151
Period size: 35 Copynumber: 2.3 Consensus size: 35
2401519 ATGGTTAAGG
2401529 GATGGTGATGATATAGGCATGAAATGGTGATGGAA
1 GATGGTGATGATATAGGCATGAAATGGTGATGGAA
*
2401564 GATGGTGATGATATAGGCGTGAAATGGTGATGGAA
1 GATGGTGATGATATAGGCATGAAATGGTGATGGAA
2401599 GATGGTGATG
1 GATGGTGATG
2401609 GATAGATAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.31, C:0.03, G:0.40, T:0.26
Consensus pattern (35 bp):
GATGGTGATGATATAGGCATGAAATGGTGATGGAA
Found at i:2404784 original size:16 final size:16
Alignment explanation
Indices: 2404752--2404799 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
2404742 TAAGGTAGTA
2404752 AATAAGAAAAGATGAAAG
1 AATAAG-AAA-ATGAAAG
*
2404770 AATAAGAAAATGAAAT
1 AATAAGAAAATGAAAG
*
2404786 ATTAAGAAAATGAA
1 AATAAGAAAATGAA
2404800 GATAACTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 19 0.68
17 3 0.11
18 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (16 bp):
AATAAGAAAATGAAAG
Found at i:2405032 original size:18 final size:18
Alignment explanation
Indices: 2405011--2405046 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2405001 TCTTTTATCT
* *
2405011 TTCTTTTTGTTTTTTTTC
1 TTCTTTTTCTTTTGTTTC
2405029 TTCTTTTTCTTTTGTTTC
1 TTCTTTTTCTTTTGTTTC
2405047 AACACTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (18 bp):
TTCTTTTTCTTTTGTTTC
Found at i:2405461 original size:35 final size:35
Alignment explanation
Indices: 2405419--2405495 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
2405409 GTTAAGGGAT
*
2405419 GGTGATGATATAGGCGTGAAATGGTGATGGAAGAC
1 GGTGATGATATAGGCGTGAAATGGTGATAGAAGAC
*
2405454 GGTGATGATATAGGCGTGAAATGGTGATAGAAGAT
1 GGTGATGATATAGGCGTGAAATGGTGATAGAAGAC
2405489 GGTGATG
1 GGTGATG
2405496 GAAGATGGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.31, C:0.04, G:0.40, T:0.25
Consensus pattern (35 bp):
GGTGATGATATAGGCGTGAAATGGTGATAGAAGAC
Found at i:2405508 original size:13 final size:13
Alignment explanation
Indices: 2405474--2405515 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
2405464 TAGGCGTGAA
*
2405474 ATGGTGATAGAAG
1 ATGGTGATGGAAG
2405487 ATGGTGATGGAAG
1 ATGGTGATGGAAG
2405500 ATGGTGATGGACAG
1 ATGGTGATGGA-AG
2405514 AT
1 AT
2405516 AGTATCTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 23 0.85
14 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.40, T:0.24
Consensus pattern (13 bp):
ATGGTGATGGAAG
Found at i:2407851 original size:13 final size:11
Alignment explanation
Indices: 2407810--2407894 Score: 66
Period size: 11 Copynumber: 7.2 Consensus size: 11
2407800 ACAATCTGTC
2407810 CATCACCATTAT
1 CATCACCA-TAT
*
2407822 CA-CGCCTATAT
1 CATCACC-ATAT
2407833 CATCACCATAGT
1 CATCACCATA-T
2407845 CCATCACCATTAT
1 -CATCACCA-TAT
*
2407858 CA-CGCCTATAT
1 CATCACC-ATAT
2407869 CATCACCATATT
1 CATCACCATA-T
2407881 CCATCACCATAT
1 -CATCACCATAT
2407893 CA
1 CA
2407895 CGCCAATAAC
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.40
12 15 0.25
13 19 0.32
14 2 0.03
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:2407854 original size:36 final size:36
Alignment explanation
Indices: 2407807--2407908 Score: 170
Period size: 36 Copynumber: 2.9 Consensus size: 36
2407797 GATACAATCT
2407807 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
2407843 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* * *
2407879 TTCCATCACCA-TATCACGCCAATAACATCA
1 GTCCATCACCATTATCACGCCTATATCATCA
2407909 TCCTTCCATT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 17 0.27
36 46 0.73
ACGTcount: A:0.32, C:0.36, G:0.05, T:0.26
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Found at i:2407923 original size:33 final size:34
Alignment explanation
Indices: 2407808--2407924 Score: 130
Period size: 36 Copynumber: 3.4 Consensus size: 34
2407798 ATACAATCTG
* *
2407808 TCCATCACCATTATCACGCCTATATCATCACCAT
1 TCCATCACCATTATCACGCCAATAACATCACCAT
* *
2407842 AGTCCATCACCATTATCACGCCTATATCATCACCATAT
1 --TCCATCACCATTATCACGCCAATAACATCACC--AT
2407880 TCCATCACCA-TATCACGCCAATAACATCATCC-T
1 TCCATCACCATTATCACGCCAATAACATCA-CCAT
*
2407913 TCCATTACCATT
1 TCCATCACCATT
2407925 TCATCACCAT
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
33 10 0.14
34 1 0.01
35 17 0.23
36 44 0.59
38 2 0.03
ACGTcount: A:0.31, C:0.37, G:0.03, T:0.29
Consensus pattern (34 bp):
TCCATCACCATTATCACGCCAATAACATCACCAT
Found at i:2407942 original size:33 final size:33
Alignment explanation
Indices: 2407808--2407946 Score: 86
Period size: 36 Copynumber: 4.0 Consensus size: 33
2407798 ATACAATCTG
* * *
2407808 TCCATCACCATTATCACGCCTATATCATCA-CCAT
1 TCCATCACCA-TATCACACCAATAACATCATCC-T
* * *
2407842 AGTCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 --TCCATCACCA-TATCACACCAATAACATCATCC---T
*
2407880 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACACCAATAACATCATCCT
* * *
2407913 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CACCAATAACATCATCCT
2407946 T
1 T
2407947 TATTCATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
33 23 0.25
34 7 0.08
35 17 0.18
36 44 0.47
38 2 0.02
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.30
Consensus pattern (33 bp):
TCCATCACCATATCACACCAATAACATCATCCT
Found at i:2408327 original size:24 final size:24
Alignment explanation
Indices: 2408287--2408333 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
2408277 AAAGTGCTAC
2408287 AACAAAAAGCAACAAGAAAGAAGAA
1 AACAAAAAGCAACAAGAAA-AAGAA
2408312 AACAAAAGAG-AA-AAGAAAAAGA
1 AACAAAA-AGCAACAAGAAAAAGA
2408334 CTCCTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 6 0.29
25 9 0.43
26 2 0.10
ACGTcount: A:0.74, C:0.09, G:0.17, T:0.00
Consensus pattern (24 bp):
AACAAAAAGCAACAAGAAAAAGAA
Found at i:2408580 original size:23 final size:24
Alignment explanation
Indices: 2408549--2408597 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
2408539 TTTCTTACTA
*
2408549 TTTCATTTC-TTATTCTT-TCATCT
1 TTTCATTTCATTA-CCTTATCATCT
*
2408572 TTTCTTTTCATTACCTTATCATCT
1 TTTCATTTCATTACCTTATCATCT
2408596 TT
1 TT
2408598 CTTAACCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTCATTTCATTACCTTATCATCT
Found at i:2418766 original size:13 final size:13
Alignment explanation
Indices: 2418744--2418773 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2418734 ACTAAACACC
2418744 TTTC-ACATACCT
1 TTTCAACATACCT
2418756 TTTCAACATACCT
1 TTTCAACATACCT
2418769 TTTCA
1 TTTCA
2418774 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:2423513 original size:415 final size:415
Alignment explanation
Indices: 2422743--2424402 Score: 3248
Period size: 415 Copynumber: 4.0 Consensus size: 415
2422733 GCTTCCCTTA
*
2422743 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTATTTGTGAGCTATATATGACGTCCAAATCATT
1 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
2422808 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
66 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
2422873 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
131 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
2422938 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
196 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
*
2423003 AGAGTTAATATGAATGCAAATAAACTAATAAAATGCATTATAAGTATGCTGCCTTGATGTATATA
261 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
* *
2423068 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAACTAAGAAT
326 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
2423133 GTGTAAGATGTGTTCATACTAAGTT
391 GTGTAAGATGTGTTCATACTAAGTT
2423158 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
1 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
2423223 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
66 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
*
2423288 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCA
131 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
2423353 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
196 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
*
2423418 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTACATA
261 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
2423483 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
326 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
2423548 GTGTAAGATGTGTTCATACTAAGTT
391 GTGTAAGATGTGTTCATACTAAGTT
*
2423573 ACATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
1 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
2423638 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
66 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
2423703 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
131 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
2423768 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
196 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
2423833 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
261 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
2423898 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
326 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
2423963 GTGTAAGATGTGTTCATACTAAGTT
391 GTGTAAGATGTGTTCATACTAAGTT
2423988 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
1 GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
2424053 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
66 CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
2424118 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
131 TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
2424183 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
196 AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
*
2424248 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTACCTTGATGTATATA
261 AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
2424313 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
326 TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
2424378 GTGTAAGATGTGTTCATACTAAGTT
391 GTGTAAGATGTGTTCATACTAAGTT
2424403 ACTCTTTAGC
Statistics
Matches: 1234, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
415 1234 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (415 bp):
GCATTCCATGAGCTGCCTTGTACTTTGTGAGCTGTTTGTGAGCTATATATGACGTCCAAATCATT
CACCAAGCTACCTCAACGTGCATCACACTCCATTGTACCTATATGTGCAAGGAAACAAGGTAAGT
TCATGATATTGAGCTAAAACGAGCTAAATACCTTGCTGCCATGTTTGTTTATGGTAATGTGAGCT
AAGTATAATGGTCATGAGCTAAGTACATCATCTCCTAATATGTGTAAGATAATGTATAAAGCCTA
AGAGTTAATATGAATGCAAATAAACTAATGAAATGCATTATAAGTATGCTGCCTTGATGTATATA
TAATAATCATGCTTAATATGATAATAAAAATATCCTAACATGCTTAACATATTAAAAATAACAAT
GTGTAAGATGTGTTCATACTAAGTT
Found at i:2430599 original size:36 final size:36
Alignment explanation
Indices: 2430547--2430626 Score: 133
Period size: 36 Copynumber: 2.2 Consensus size: 36
2430537 GATACAATCT
*
2430547 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCAATATCACGCCTATATCATCACCATA
*
2430583 GTCCATCACCAATATCACGCCTATATCATTACCATA
1 GTCCATCACCAATATCACGCCTATATCATCACCATA
*
2430619 TTCCATCA
1 GTCCATCA
2430627 ACATATTACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.31, C:0.35, G:0.05, T:0.29
Consensus pattern (36 bp):
GTCCATCACCAATATCACGCCTATATCATCACCATA
Found at i:2431525 original size:104 final size:104
Alignment explanation
Indices: 2431345--2431549 Score: 374
Period size: 104 Copynumber: 2.0 Consensus size: 104
2431335 AATATAATAT
*
2431345 AAAGTATGGTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCA
1 AAAGTAAGGTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCA
*
2431410 GAAAGTTGGTGCTTGACAGGATCACATCATCTAAGAAGG
66 GAAAGTTGGTGCTAGACAGGATCACATCATCTAAGAAGG
*
2431449 AAAGTAAGGTAGAACTCCCTTATATTGATCTTGATCGATTTTCAATGATGTGAGTATGTCATGCA
1 AAAGTAAGGTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCA
*
2431514 GAAAGTTGGTGCTAGACAGGATCATATCATCTAAGA
66 GAAAGTTGGTGCTAGACAGGATCACATCATCTAAGA
2431550 GGGTTTGGTG
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 97 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (104 bp):
AAAGTAAGGTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCA
GAAAGTTGGTGCTAGACAGGATCACATCATCTAAGAAGG
Found at i:2431676 original size:123 final size:123
Alignment explanation
Indices: 2431457--2431706 Score: 473
Period size: 123 Copynumber: 2.0 Consensus size: 123
2431447 GGAAAGTAAG
*
2431457 GTAGAACTCCCTTATATTGATCTTGATCGATTTTCAATGATGTGAGTATGTCATGCAGAAAGTTG
1 GTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCAGAAAGTTG
*
2431522 GTGCTAGACAGGATCATATCATCTAAGAGGGTTTGGTGGTAGATGTAAAGGTAAAATT
66 GTGCTAGACAGGATCACATCATCTAAGAGGGTTTGGTGGTAGATGTAAAGGTAAAATT
2431580 GTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCAGAAAGTTG
1 GTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCAGAAAGTTG
*
2431645 GTGCTAGACAGGATCACATCATCTAAGAGGGTTTGGTGGTAGATGTAAAGGTGAAATT
66 GTGCTAGACAGGATCACATCATCTAAGAGGGTTTGGTGGTAGATGTAAAGGTAAAATT
2431703 GTAG
1 GTAG
2431707 GCTATTTAAT
Statistics
Matches: 124, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (123 bp):
GTAGAACTCCCTTATATTGAGCTTGATCGATTTTCAATGATGTGAGTATGTCATGCAGAAAGTTG
GTGCTAGACAGGATCACATCATCTAAGAGGGTTTGGTGGTAGATGTAAAGGTAAAATT
Found at i:2445581 original size:16 final size:16
Alignment explanation
Indices: 2445547--2445580 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
2445537 TTCATCTTTC
*
2445547 TTTCTTTTTCTTTTCT
1 TTTCTTTTTCTTCTCT
2445563 TTTCTTTTTCTTC-CT
1 TTTCTTTTTCTTCTCT
2445578 TTT
1 TTT
2445581 TGAGTGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTTTTTCTTCTCT
Found at i:2451042 original size:19 final size:20
Alignment explanation
Indices: 2451018--2451060 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
2451008 AGTATTTATC
*
2451018 TTCATT-AAAATTATGTATT
1 TTCATTGAAAATCATGTATT
*
2451037 TTCATTGAAAATCATGTGTT
1 TTCATTGAAAATCATGTATT
2451057 TTCA
1 TTCA
2451061 AAGGGGTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (20 bp):
TTCATTGAAAATCATGTATT
Found at i:2451603 original size:16 final size:16
Alignment explanation
Indices: 2451569--2451615 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 16
2451559 ATAACATCTC
*
2451569 TATCCATTTTATTTCT
1 TATCCATTTCATTTCT
2451585 TATCC-TTTCATTTCT
1 TATCCATTTCATTTCT
2451600 T-T--ATTTCATTTCT
1 TATCCATTTCATTTCT
2451613 TAT
1 TAT
2451616 TTTCAATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 11 0.39
14 2 0.07
15 10 0.36
16 5 0.18
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (16 bp):
TATCCATTTCATTTCT
Found at i:2451619 original size:13 final size:14
Alignment explanation
Indices: 2451579--2451620 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
2451569 TATCCATTTT
2451579 ATTTCTTATCCTTTC
1 ATTTCTTAT-CTTTC
*
2451594 ATTTCTT-TATTTC
1 ATTTCTTATCTTTC
2451607 ATTTCTTAT-TTTC
1 ATTTCTTATCTTTC
2451620 A
1 A
2451621 ATATATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 16 0.64
14 2 0.08
15 7 0.28
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTCTTATCTTTC
Found at i:2451850 original size:6 final size:6
Alignment explanation
Indices: 2451809--2451850 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
2451799 AAAATCAACA
*
2451809 AAAAGAG AAAAAG AAAGAAG AAAAAC AAAAAG -AAAAG AAAAA
1 AAAA-AG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAA
2451851 TACTCCTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 5 0.16
6 16 0.52
7 10 0.32
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:2452071 original size:16 final size:16
Alignment explanation
Indices: 2452037--2452085 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
2452027 GTAAGTTATC
* * *
2452037 TTCACTTTCTTACTAT
1 TTCATTTTCTTATTCT
2452053 TTCATTTTCTTATTCT
1 TTCATTTTCTTATTCT
2452069 TTCATCTATTCTTATTC
1 TTCAT-T-TTCTTATTC
2452086 CATTACCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCATTTTCTTATTCT
Found at i:2454934 original size:294 final size:292
Alignment explanation
Indices: 2452705--2458233 Score: 2572
Period size: 294 Copynumber: 18.8 Consensus size: 292
2452695 AACCGGGTTA
* ** * *
2452705 GAACGAGC-GAAAAAAGAGTTTTGGATAACAAAATTAAATATTTT-AGGATTTGTC-GAAAGAAA
1 GAACGAGCTGGAAAAAGAG-TCGGGATCACAAAATTAAATATTTTAAGGATTAGTCAG-AAGAAA
* ** ** * *
2452767 ATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGTGCAAGACATGATGTGTGCGATCATACGA
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-A
* * ** * *
2452832 GCACTAATGCACCGGATCCCATCAGAACTCCATAGTGAAGTGTGCTTGGGCGACAGTAGTACTAG
128 ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAG
* ** * * *
2452897 GATAGGTGACCTCCAGGGAAGTCCTCGTGTTG-TTCCCTATTTTTTCTTTAAGAATT-TATGCGT
193 GATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTC---AA-AATTCTATACTT
* * * *
2452960 TATCTTAAATTTTGGTT-TTTTTTAGAAGAGACGAGGTG
254 TATCTTAATTTTTTGTTGTTTTTTAAAAGAGATGAGGTG
* * * * *** * * *
2452998 AAAGGAGC-GTG-AAAGGATTCGGGAATTGTAAAATAAAATAGTTTAAGGGTTAGTCAGAAGAAA
1 GAACGAGCTG-GAAAAAGAGTCGGG-ATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAA
* * * ** * *** * * ** *
2453061 CTAGTTACACGGAGAAACGTTTAAATTAATTCTTGGCGCAAGACATAATGAATGCGATCATACAA
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-A
* * * * * * ** ** *
2453126 ACACTAATGTACCGGATCCTATCAGATCTCCGCAGTCAACCGTTATTGGTTGAGAGTAGTAATAG
128 ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAG
* * * *
2453191 GATGGGTGACCTTCTGGGAAGTCTTCGTGTTGC-TCCC-ATTTTTTAAAAATT-TATA-TATTAT
193 GATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACT-TTAT
* * ** *** *
2453252 CTTGATTTTTTGTTTTTTTTTTCATTCG--G-GTTG
257 CTTAATTTTTTGTTGTTTTTTAAAAGAGATGAGGTG
* * * * * * * *
2453285 GAATGAGAT-GTAAAA-TGTCAGGGATCACTAAATTAAAT-GTTTAAGTATTAGTTAGAAGAAAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAA
* * **
2453347 -AGATTACATGGAGAAGCGTTTAAATAAATTAAGGGCGTAAGACATGATGGGTG-AGATCATACC
65 TTG-TTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCA-ATCATA-C
** ** * * * * **
2453410 AGTACTAATGCACCAAATCTCATTATAACTTCGCAGTGAA-CTGTGCTTTGGTTAGAGTAGTACT
127 AACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGC-GTGCTTGGGCGAGAGTAGTACT
* * ** ** * * * *
2453474 AGGATGGGTGACGT-CTATGGAAGTTATAATGTTACA-CCCT-TCTTTTCAAAATTATATAATTT
191 AGGATGGGTGACCTCCT-CGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTT
* * * *
2453536 ACCTTAATATTTAGTGTTGTTTTCTTTAAAAG-GGTTAGGGTG
255 ATCTTAAT-TTT-TTGTTG-TTT-TTTAAAAGAGATGA-GGTG
* * * *
2453578 GAACAAG-T-GAGAAAGGAGTCTGGGATCACAAAATTAAATATTTTAAGGATTGGT--GTAAAAA
1 GAACGAGCTGGA-AAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAG-AAGAA
* * * * * * ** * * **
2453639 AATGGCTATATGAAGAAGCAG-TTAAATAAATAAAGGGTGCAACACATGATGTGTGTGATCATAC
63 AATTGTTACATGGAGAAG-TGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC
* * * *** ** *
2453703 GAGCACTAATGCACTGAATCCCATCAGAACTTTATAGTGAAGTTTGCTTGTGCGAGAGTAGTACT
127 -AACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACT
* * ** * * * * * *
2453768 AGGATGGGTGACCTCCTGGGATGTCCTCAAGTTGTA-CCCCACTTTATTTTCCAATTTTTATACA
191 AGGATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTA--TT-TTTTCAAAATTCTATACT
* **
2453832 TTATCTTAATTTTTGGTGTTGTATTTTTTTTAAAGAGCCGAGGTG
253 TTATCTTAATTTTT--TGTTG---TTTTTTAAAAGAGATGAGGTG
* * * *** ** * * * * *
2453877 GAATGA-C-CGAGAAAAGAGCCAATAATCGTAAAATTAGATAGTTTAAGCATTAGTCGGTAGAAA
1 GAACGAGCTGGA-AAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAA
* * * ** *
2453940 ATGGTTACATGGATAAGCGTTTAAATAAATTAAGGGTGCAAGACATGATAGGTGCAATCATACGA
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-A
* * * * ** * * *
2454005 GCACTAATCCACCGGATCCCATCAGAAC-TCTGTAGTGGAGCGTATTTAGGTGATAGTAGTACTA
128 ACACTAATGCACCGGATCCCATCAGAACTTC-GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTA
* * * * * * * *
2454069 GGATGTGTGACCT-CTTGGAAAGCCCTTGTATTGCACCCCT-TTTTTTTACAAA-TCTTATAGTT
192 GGATGGGTGACCTCCTCGG-AAGTCCTCGTGTTGCATCCCTATTTTTTCA-AAATTC-TATACTT
* * * * *
2454131 TAT-TCTAATTTTTGGTAATGTTTTTTAATATA-CTCG-GTTTG
254 TATCT-TAATTTTTTGT--TGTTTTTTAAAAGAGAT-GAG-GTG
* * * ** * * ** * ** *
2454172 GATCGAG-TGGACAAGGAGTCGGTGATCGTAAAACTAAATAATTTAAAAAATA-TTTGAAAGGAA
1 GAACGAGCTGGAAAAAGAGTCGG-GATCACAAAATTAAATATTTTAAGGATTAGTCAG-AAGAAA
* * ** *** * *
2454235 ATGGTTATATACA-ACAACATTTAAATAAATTAAGGGCACAATATATGATGGGTGCAATCATACT
64 ATTGTTACATGGAGA-AGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-
** * * * * * *
2454299 AGA-ACTAATGCATTGGATCTCATCAGAACTCCGCAGT-AATGTGTGCATGGGCAAGAGTAGTTC
127 A-ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAA-GCGTGCTTGGGCGAGAGTAGTAC
* * * * * *
2454362 AAGGATGGGTGACCTCC-CAGGAAGTCTTCGTGTTACACCCCTATTATTTCAAAATTTTATACTT
190 TAGGATGGGTGACCTCCTC-GGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTT
* *** * *
2454426 TATCTGAGTATTTGGAGTTGTTTTTT--TAG-GAGGCATGGTG
254 TATCTTA--ATTTTTTGTTGTTTTTTAAAAGAGATG-A-GGTG
* * *
2454466 GAACGAGC-GGAAAAAGAGCCTTGGATCA-AAACATTACATATTTT-AGGATTAGTCAGAA-AAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAA-ATTAAATATTTTAAGGATTAGTCAGAAGAAA
* * * * * * *
2454527 ATGGTTAAATGGAGAAGCGTTTAAATAAATTAAGGGCATAAGGCATGATGTGTGTAATCATA-AG
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATACA-
*** * ** * *
2454591 AGCACTAATGCGTTGGATCCCATCAGAACTCCATAGTGAAGTGTGCTTGGGAGAGAGTAGTACTA
128 A-CACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTA
* * * *
2454656 GGATGGGTGGCCTCCTCGGAAGTCCTCGTGTTACATCCCTATTTTCTCAAAATTCTATACCTTAT
192 GGATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTTAT
* *
2454721 CTTAATTTGTTTCTTGTTTGTTTAAAAGAGATGAGGTA
257 CTTAATTT-TTTGTTGTTT-TTTAAAAGAGATGAGGTG
* * * * *
2454759 GAACGA-CTGGGAAAAGTGTCGGGATCACAAAATTAAATATTTTAAGGATTACTCGGAATAAAAT
1 GAACGAGCTGGAAAAAGAGTCGGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAAT
* * * * * *
2454823 TGTTACATGGAGCAGTGTTTAAATAAATAAATGGCACCATACATGATGGGTTCAATCATATCAAC
66 TGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATA-CAAC
* * ** *
2454888 ACTAATGCACCAGATCCCATCAGAACTTCGCAGTGAAGCATGCTTGGGCGAGAGTAGTTTTATGA
130 ACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
* * * * * *
2454953 TGGGTGACCTCCTGGGATGTCCTAGTGTTGCA--CCT-TTTCTTTCAAAATTTTATATTTTAACT
195 TGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTT-TTTCAAAATTCTATACTTTATC-
* *
2455015 TTATTTTTTGTGTTGTTTTCTTTAAAATAG-T-AGGGTTG
258 TTAATTTTT-TGTTG-TTT-TTTAAAAGAGATGA-GG-TG
* ** * * ** **
2455053 GAACAAG-T--AAGACAAGAGTCGAGGAT-TGAAAACTAAAAATTTTAATTATTAGTTGGAAGAA
1 GAACGAGCTGGAA-A-AAGAGTCG-GGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAA
* * * ** * * *
2455114 AATGGATACACGGAGAAGTGTTTTAAA-AAATTAAGGGTGGC-AGACATAATGGGTGCTATCACA
63 AATTGTTACATGGAGAAGTG-TTTAAATAAATTAAGGG-CACAAGACATGATGGGTGCAATCATA
* * * * * * * * *
2455177 CCAGA-ATTAATTCACCGGATCCCATTAGAATTTTGCAGTTAAGCATGCCTGGGTGAGAGTAGTA
126 -CA-ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTA
* * * * *
2455241 CTAGGATTGGCGACCT-CTTGGAAAGTCCTCGTGTTG--TGCACCT-CTTTTTCAAAACTT-TGT
189 CTAGGATGGGTGACCTCCTCGG-AAGTCCTCGTGTTGCAT-C-CCTATTTTTTCAAAA-TTCTAT
* * * * *
2455301 ACTTTATCATAATTTTTGGTGTTGTTTTTTTTAAAGACACGGGGTG
250 ACTTTATCTTAATTTTT--TGTTG-TTTTTTAAAAGAGATGAGGTG
* * *
2455347 GAACGAGC--GATAAAAGAGTTTGGGATCAAAAAATTTAATATTTTAAGGATTAGTCAGAAGAAA
1 GAACGAGCTGGA-AAAAGAG-TCGGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAA
* * ** *
2455410 A-TGATTACTTGGAGAAGTGTTTAAATAAATTAAGCGG-GCAAGACATGATAAGTGCGATCATAC
64 ATTG-TTACATGGAGAAGTGTTTAAATAAATTAAG-GGCACAAGACATGATGGGTGCAATCATAC
* * * * * * * * * * * *
2455473 AACACAAATACATCGGATCCTATCATAACTTTGTAATTAAGCGTGCTTGCGCGAGAGAATTACTA
127 AACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTA
* * * *
2455538 GGATGGGTGACCT-CTCCGAAATTCCTTGTGTTGCATCCCTTTTTTTTCAAAATTCTATA-TTTA
192 GGATGGGTGACCTCCT-CGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTTA
* * * * *
2455601 TCTTTATTTTGGTGTTCTTTTTTTCAAAAGAGCTGGGGTG
256 TCTTAATTTT-TTGTT-GTTTTTT-AAAAGAGATGAGGTG
** *
2455641 GAACGAGCTGGAAAAAGAGTCAGGGATCGTAAAATTAAATATTTTAAGGATTAGTCGGAAG-AAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAA
** * *
2455705 TTGGTTACATGGAGAAGCATTTAAATAAATTAAGGGTACAAGACATGATGGGTGCGATCATACGA
65 TT-GTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-A
* * * * ** * *
2455770 GCTCTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGCGTATTTAGGCGAGAGTATTACTCA
128 ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACT-A
** * * * * * * *
2455835 -GATACGTGATCTCCT-GGAAAGCCCTTGTATTGCAT-GCTTTTTTTTC-AAA-TCTTATATTTT
192 GGATGGGTGACCTCCTCGG-AAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTC-TATACTTT
* * * * * *
2455895 ATTTTAATTTTTGGTATTATTTTTTAATATA-CTCG-GTGTG
255 ATCTTAATTTTT--TGTTGTTTTTTAAAAGAGAT-GAG-GTG
* * * ** * * *
2455935 GATCGAG-TGGAAAATGAGTTGAGGATCGTAAAACTAAATATTTTACA-AATTAGTCAAAAGAAA
1 GAACGAGCTGGAAAAAGAGTCG-GGATCACAAAATTAAATATTTTA-AGGATTAGTCAGAAGAAA
* * * * * ** ** *
2455998 ATGGTTAAATGGATAAGCGTTTTAATAAATTAAGGG-ATCAAGACATGATATGTGTGATCATTCG
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCA-CAAGACATGATGGGTGCAATCATAC-
* * * * * * *
2456062 AGA-ACTAAAGCACCAGATCCCATTAGAAC-TCCCTAGTGAAGTGTGCTTGGACGAGAGTAATAC
127 A-ACACTAATGCACCGGATCCCATCAGAACTTCGC-AGTGAAGCGTGCTTGGGCGAGAGTAGTAC
* * * * *
2456125 TAGGAT-GGTGACCTCCTAGGAAGTCCTCGTGTTGCTTCCCTATTTTTTTAAAATTTTAT-CCTT
190 TAGGATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTT
*
2456188 ATCTTAA-TTTTTG-T-TTTTTT-AAAGAGACGAGGTG
255 ATCTTAATTTTTTGTTGTTTTTTAAAAGAGATGAGGTG
* * * * *
2456222 GAACGAGC-AGAAAAAGTGGCAGGGATCACAAAATTAATTATTTTAGGGATTAGTCAGAAGAAAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAA
* * * * * * *
2456286 TTGTTACATGGAGCACTGTTTAAATAAATTAAGGGCACAATACATGATGGGTTCAATTATAGTAG
65 TTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATA-CAA
* ** * *
2456351 CACTAATGCACCGGATCCCATCAGAACTTTGCTTTGAAGCGTGCTTGGGCGAGAGTAGTATTATG
129 CACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGG
** * * * *
2456416 ATGGGTGACCTCCT-TAAATATCATCGTGTTGCA--CCTTTTTTTTCAAAATTTTAT-C-TT-T-
194 ATGGGTGACCTCCTCGGAA-GTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTTATC
* * *
2456474 TAAATTTGTTGGTGTTGTATTCTTTAAAAGAGTTTG-GTTG
258 TTAATTT-TT--TGTTGT-TT-TTTAAAAGAG-ATGAGGTG
* * * * * * * * ** **
2456514 AAACAAGCAGG-ACAAGAGTAGAGGA--ATGAAAACTAAATATTTTAAAAGAGTT-GATTTGGTG
1 GAACGAGCTGGAAAAAGAGTCG-GGATCA-CAAAATTAAATATTTT-AAGGA-TTAG-TCAGAAG
**** *** * * * * * * **
2456575 TTCTTTCAAACAGGGAGGAGCGTTTAAGA-AAAATAATGGTG-ACAA-ACATAATGGGAGTTATC
61 AAAATTGTTACATGGAGAAGTGTTTAA-ATAAATTAA-GG-GCACAAGACATGATGGGTGCAATC
* * * * * * * ** *
2456637 ACACAAGAACTAATTCACCGGATCCCATTAGAATTTTGCAGTTAAGAATG-TTAGGGTGAGAGTA
123 ATACAA-CACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTT-GGGCGAGAGTA
* * * * * * * *
2456701 GTACTAGGATTGGCGA-CTGCTTGGAAAGTCCTCGTATTG--TGCACCTCTTTTTTCGAAACTCT
186 GTACTAGGATGGGTGACCTCCTCGG-AAGTCCTCGTGTTGCAT-C-CCTATTTTTTCAAAATTCT
* * *
2456763 ATACTTTATCATAATTTTTGGTGCCATT-TTTTTTATAAATA-ATCAGGGTG
248 ATACTTTATCTTAATTTTT--TG---TTGTTTTTTA-AAAGAGATGA-GGTG
* * *
2456813 GAACGAG-T-GATAAAAGAGTCTGGGATCTA-AAAATTAAATATTTTAAAGATTATTCGGAAGAA
1 GAACGAGCTGGA-AAAAGAGTC-GGGATC-ACAAAATTAAATATTTTAAGGATTAGTCAGAAGAA
* * ** * * * *
2456875 AATGGTTACATAGAGAAGCATTTAAATAATTTAAGGGCGCAAGACATGATAGGTGCGATCATACC
63 AATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATA-C
* * * ** * * * * *
2456940 AAAACAAATGCACCGGATCCTATCAGAACTTTTCAATTAAGCGTGATT-GGCGAGAGGATTACTA
127 AACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTA
* * ** * * * *
2457004 GGATAGGTGACCTCTTCTAAAGTCCTTGTGTTGCATCCCTCTTTTTTCAAAATTTTATAGTTTAT
192 GGATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTTAT
* * *
2457069 CTTAATATTTGATGTTCTTTTCTTCAAAAGAG-TCGGGGTG
257 CTTAAT-TTT-TTGTTGTTTT-TT-AAAAGAGAT-GAGGTG
** * ** *
2457109 GAATTAG-TTGAAAAAGAGTCAGGGATCGTAAAATTAAATATTTTATGGATTAGTC-GAAAGAAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAG-AAGAAA
* * * ** * ** *
2457172 ATGGTTAAATGGAGAAGTGTTTAAATAAATTATGGGTGCAAGACATGATGTGTGTGACCATACGA
64 ATTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-A
*** * * * * * * * * * *
2457237 GTGCAAATGCACCGAATCCCATCAGAACTCCGTAGTAAAGCGTGTTTAGGAGATAGTAGTTCTAG
128 ACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAG
* * * * * *
2457302 GTTGGGTGACCTCAT-GGAAAGCTCTTC-TATTGCA-CCTTTTTTTTTC-AAA-TCTTATA-TAT
193 GATGGGTGACCTCCTCGG-AAG-TCCTCGTGTTGCATCCCTATTTTTTCAAAATTC-TATACT-T
* * ** * *
2457361 TATTTTAATTTTTGGTAT-TTGTTTTATTAGA-CTCAGTGTG
254 TATCTTAATTTTTTGT-TGTT-TTTTAAAAGAGATGAG-GTG
** * ** * * * * * *
2457401 GATTGAG-TAGAAACGGAGTCGAGGATCATAAAACTAAATATTTTACGGAATAGTCAAAATAAAA
1 GAACGAGCTGGAAAAAGAGTCG-GGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAA
* * ** *** * * *
2457465 TGGTTATAAAGAGAAACATTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAACCAAACTAG
65 TTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-AA
* * * * * * * * *
2457530 TACTAATGCATCAGATCTCATTAGAACTCCGCAGTGAAGTGTGCTTGGGTGAGAGTAGTACTAAG
129 CACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGG
** * * * *
2457595 ATGGGTGACCTCCAGGGAAGTCTTCGTGTTGCACCCCTATTATTT-AAAACTTTTATACTTTATC
194 ATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAA-TTCTATACTTTATC
* *** * *
2457659 TGAGTATTTGGAGTTGTTTTTTTTAAAGAG-TCGGGGTG
258 TTA--ATTTTTTGTTG-TTTTTTAAAAGAGAT-GAGGTG
* * * * *
2457697 GAACGA-TTGGAAAAAGTGCCTTGGATCACAAAATTCAATATTTT-AGGATTAGTC-GAAAGAAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAG-AAGAAA
* * * * * **
2457759 ATAGTTTA-ATGGAGAA-CG-TTAAATAAATTAAGGGCACAAGGCATGACGTGTGTGATCATACG
64 ATTG-TTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATAC-
* * * ** * *
2457821 AGCACTAATGCACCGGATCCCTTCAGAACTCCATAGTGAAGTGTGCTTGGGAGAGAGTAGTACTA
127 AACACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTA
* * ** * * *
2457886 GGATGGATGACCTACTAAGAAGTCCTCGTGTTTCATCCCTTTTTTTTTGAAAATT-TATAAC-TT
192 GGATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCC-TATTTTTTCAAAATTCTAT-ACTTT
* ** * *
2457949 ATCTTAATTTTTGTTTTTTTGTTTTTTTTAATAGACGAGGTG
255 ATCTTAA---TT-TTTTGTTGTTTTTTAAAAGAGATGAGGTG
* * * ** * * **
2457991 GAACGAGC-GGGAAAAGTGTCAAGGATCGTAAAATTAACTATTTTAAGGATTACTTGGAAGAAAA
1 GAACGAGCTGGAAAAAGAGTC-GGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAA
* * * * *
2458055 TAGTTACATGGAGCAGTGTTTAAATAAATTAAGGGCACAATACATGATGGGTTCAATCATACCAG
65 TTGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATA-CAA
* * * * * ** *
2458120 CACTAATGCACCGGATCACATCAGAACTTCGCAGCGAATCGTGCTTTGGTGAGAGTAGTTTTATG
129 CACTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGG
* * *
2458185 ATGGGTGACCTCCTGGGATGTCCTTGTGTTGCA-CCC--TTTTTTCAAAATT
194 ATGGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATT
2458234 TCAAATTTTA
Statistics
Matches: 3956, Mismatches: 996, Indels: 568
0.72 0.18 0.10
Matches are distributed among these distances:
283 3 0.00
284 8 0.00
285 153 0.04
286 46 0.01
287 172 0.04
288 39 0.01
289 28 0.01
290 25 0.01
291 34 0.01
292 453 0.11
293 561 0.14
294 916 0.23
295 557 0.14
296 321 0.08
297 247 0.06
298 144 0.04
299 95 0.02
300 147 0.04
301 6 0.00
302 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (292 bp):
GAACGAGCTGGAAAAAGAGTCGGGATCACAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAAT
TGTTACATGGAGAAGTGTTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCATACAACA
CTAATGCACCGGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
GGGTGACCTCCTCGGAAGTCCTCGTGTTGCATCCCTATTTTTTCAAAATTCTATACTTTATCTTA
ATTTTTTGTTGTTTTTTAAAAGAGATGAGGTG
Found at i:2464344 original size:294 final size:292
Alignment explanation
Indices: 2462285--2464623 Score: 1464
Period size: 294 Copynumber: 7.9 Consensus size: 292
2462275 GTACTAGGCA
* ** * *
2462285 CCCTATTATTTCAAAATTTTATACTTTAT-TTGGATATTTGGAATTGTTTTTTTAATAGAGTCGG
1 CCCTATTATTTCAAAATTTTATACTTTATCTT-AATATTTGGTGTTGTTTTTTT-A-AGAGGCTG
* * *
2462349 GTTAGAACGAGCGAAAAAAGAGACTTGGATCACAAAATTAAATATTTTAGGATTTGTC-GAAAGA
63 G-TGGAACGAGCG-AAAAAGAGTCTTGGATCACAAAATTAAATATTTTAGGATTAGTCGGAAAGA
* * *
2462413 AAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGTGCAAGACATGATGTGTGCGATCATAC
126 AAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCATAC
* *
2462478 GAGCACTAATGCATCGGATCCCATCAGAACTCCATAGTGAAGTGTGCTTGGGCGAGAGTAGTACT
191 GAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTACT
* ** ***
2462543 AGGATGGGTAACCTCCAAGGAAGTCCTCATGTT-GTT
256 AGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * * * * *
2462579 CCCT-TTTTTTCATTAAGAATTTATGCGTTATCTTAA-ATTTTGGTGTT-TTTTTTAGAAGAGAC
1 CCCTATTATTTCA--AA-ATTTTATACTTTATCTTAATA-TTTGGTGTTGTTTTTT-TAAGAGGC
* * * * * * * * * * * * * *
2462641 GAGGTGAAAGGAGCGTGAAAGGAGTC-GGGATTACATAATAAAATAGTTTAAGGGTAAGGCAG-A
61 -TGGTGGAACGAGCG-AAAAAGAGTCTTGGATCACAAAATTAAATA-TTTTAGGATTAGTCGGAA
* * * * *** ** *
2462704 AGAAACTGGTTACACGGAGAAGCGTTTAAATTAATTCTTGGCGCAAGACATA-ATGAATGCGATC
123 AGAAAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACA-AGATGTGTGCAATC
* * * * * * * ** *
2462768 ATA-GAAACACTAATGTACCGGATCCTACCAGATCTCCGCAGTCAA-TCGTAATTGGGTGAGAGT
187 ATACG-AGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGT-GTGCTTGGGCGAGAGT
* * * * * * *
2462831 AGTAATAGGATGGGTGGCCTTCTGGGAATTCCTCGTGTTGCTC
250 AGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * * * * * * ***
2462874 CCATTTTTTTTTAAAA-TTTATA-TATTATCTTAATTTTTTGTGTT-TTTTTTCATTCGG--GGT
1 CCCTATTATTTCAAAATTTTATACT-TTATCTTAATATTTGGTGTTGTTTTTTTAAGAGGCTGGT
* * * * ** * * * * **
2462934 GGAATGAGATGTAAAA-TGTCAAGGATCACTAAATTAAATGTTTAAGTATTAGTTAG-AAGAAAA
65 GGAACGAG-CGAAAAAGAGTCTTGGATCACAAAATTAAATATTTTAGGATTAGTCGGAAAGAAAA
* * *
2462997 TGATTACATGGAGAAGCGTTTAAATAAATTAAGGGCGTAAGACATA-ATG-GCTG-AGATCATAC
129 TGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACA-AGATGTG-TGCA-ATCATAC
* * * * * * * * * **
2463059 CAGTACTAATGTACCAGATCTCATTAGAACTTCGTAGTGAACTGTGCTTTGGTTAGAGTAGTACT
191 GAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTACT
* * ** *
2463124 AGGATGGGTGACGTCCTTGGAAGTTATAATGTTACA-
256 AGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * * * *
2463160 CCCT-TCT-TTTCAAAATTATATACTTTATCCTAATATTTAGTGTTGTTTTCTTTAAAAGGGTTG
1 CCCTAT-TATTTCAAAATTTTATACTTTATCTTAATATTTGGTGTTGTTTT-TTTAAGA-GGCT-
* * * *
2463223 GGGTGGAACGAGCGAGAAAGGAGTCTCGGATCACAAAATTAAATATTTTAAGGATTGGT-GTAAA
62 -GGTGGAACGAGCGA-AAAAGAGTCTTGGATCACAAAATTAAATATTTT-AGGATTAGTCGGAAA
* * * **
2463287 GAAAATGGCTACATGAAGAAGCATTTAAATAAATTAAGGGTGCAAGACAAGATGTGTGTGATCAT
124 GAAAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCAT
* * *** *
2463352 ACGAGTACTAATGCACCGAATCCCATCAGAACTTTATAGTGAAGTGTGCTTGTGCGAGAGTAGTA
189 ACGAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTA
* * **
2463417 CTAGGATAGGTGACCTCCTGGGATGTCCTCATGTTGTA-
254 CTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
** * * *
2463455 CCCTACTTTATTTTTTGAATTTTTATACATTATCTTAATTTTTGGTGTTGTATTTTTTTGAA-AG
1 CCCTA--TTA--TTTCAAAATTTTATACTTTATCTTAATATTTGGTGTTG--TTTTTTT-AAGAG
* * * * *** *
2463519 AGCTGAGGTGGAATGACCGAGAAAAGAGCCAAT-GATTGTAAAATTAAATAGTTTAAGGATTAGT
59 -GCT--GGTGGAACGAGCGA-AAAAGAGTC-TTGGATCACAAAATTAAATA-TTTTAGGATTAGT
* * * * *
2463583 TGG-AAGAAAATGGTTACATGGATAAGCGTTTAAATAAATTAAGGGTGCAAGACATGATAG-GTG
118 CGGAAAGAAAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGAT-GTGTG
* * * * ** * *
2463646 CAATCATACGAGTACTAATGCACCGAATCCCATCAGAACTCCGTAGTGGAGCGTATTTAGGCGAT
182 CAATCATACGAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAG
* * * * ** * *
2463711 AGTAGTACTAGGATGTGTGACCTCTTGGAAAGCCCTTTTATTGCAC
247 AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * * * * * * * **
2463757 CCCTCTT-TTTTACAAATCTTATATTTTAT-TCTAATTTTTGGTAATGGTTTTTTAATAGACTCT
1 CCCTATTATTTCA-AAATTTTATACTTTATCT-TAATATTTGGT-GTTGTTTTTTTA-AGAGGCT
* * * ** ** * * **
2463820 GTGTGGATCGAGTGGACAAAGAGTCGGGGATCGTAAAACTAAATA-TTTACGAATTA-TTTGAAA
62 G-GTGGAACGAG-CGAAAAAGAGTCTTGGATCACAAAATTAAATATTTTA-GGATTAGTCGGAAA
* * * * * * *
2463883 GGAAATGGTTACATAGAGCAGCATTTAAATAAATTAAGGGCACAATACATGATGGGTGCAATCAT
124 GAAAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCAT
* * ** * * * **
2463948 ACTAGAACTAATGCATTGGATCTCATTAGAACTCCGTAGT-AATGTGTGCATGGGAAAGAGTAGT
189 ACGAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAA-GTGTGCTTGGGCGAGAGTAGT
* * ** * *
2464012 TCAAGGATGGGTGACCTCCCAGGAAGTCTTTATGTTACAC
253 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * *
2464052 CCCTATTATTTCAAAATTTTATACTTTATCTGAGTATTTGGAGTTGTTTTTTTAAGAGGCATGGT
1 CCCTATTATTTCAAAATTTTATACTTTATCTTAATATTTGGTGTTGTTTTTTTAAGAGGC-TGGT
* * * *
2464117 GGAACGAGCAGAAAAATAGCCTTGGATCAAAAAATTAAATATTTTAGGATTAGTCGGAAAAAAAA
65 GGAACGAGC-GAAAAAGAGTCTTGGATCACAAAATTAAATATTTTAGGATTAGTCGGAAAGAAAA
* * * * * *
2464182 TGGTTAAATGGAGAA-CTTTTTAAATAAATTAAGGGCGTAAGGCAAGATGTGTGTAATCATAAGA
129 TGGTTACATGGAGAAGC-ATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCATACGA
* * * *
2464246 GCACTAATTCATCGGATCCCATCAGAACTCCATAGTGAAGTGTGCTTGGGAGAGAGTAGTACTAG
193 GCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTACTAG
* * *
2464311 GATGGGTGGCCTCCTGGGAAGTCCTCGTGTTACAT
258 GATGGGTGACCTCCTGGGAAGTCCTCATGTTACAC
* * * * * * * *
2464346 CCCTATTTTTTCAAAATTCTATACCTTATCTTAAT-TTTTGTCTTGTTTGTTTAAAAGAGATGAG
1 CCCTATTATTTCAAAATTTTATACTTTATCTTAATATTTGGTGTTGTTTTTTTAAGAG-GCT--G
* * * * * *
2464410 GTGGAACGA-CTGGGAAAAGTGTC-GGGATCGCAAAATTAAATATTTTAAGGATTACTCGG-AAT
63 GTGGAACGAGC--GAAAAAGAGTCTTGGATCACAAAATTAAATATTTT-AGGATTAGTCGGAAAG
* ** * * ** * * * * * * * *
2464472 AAATTTTTTTCATGGAGCAGTGTTTAAATAAATTAATGGCACCATATATGATGGGTTCAATCATA
125 AAAATGGTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCATA
* * * * * * * **
2464537 CCAACACTAATGCACCAGATCCCATCAGAACTTCGCAGTGAAGCGTGCTTGTGCGAGAGTAGTTT
190 CGAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTAC
*
2464602 TATGATGGGTGACCTCCTGGGA
255 TAGGATGGGTGACCTCCTGGGA
2464624 GAAGTGTTTA
Statistics
Matches: 1564, Mismatches: 401, Indels: 160
0.74 0.19 0.08
Matches are distributed among these distances:
285 8 0.01
286 26 0.02
287 146 0.09
288 29 0.02
289 3 0.00
291 2 0.00
292 29 0.02
293 98 0.06
294 519 0.33
295 358 0.23
296 62 0.04
297 19 0.01
298 25 0.02
299 2 0.00
300 33 0.02
301 190 0.12
302 15 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (292 bp):
CCCTATTATTTCAAAATTTTATACTTTATCTTAATATTTGGTGTTGTTTTTTTAAGAGGCTGGTG
GAACGAGCGAAAAAGAGTCTTGGATCACAAAATTAAATATTTTAGGATTAGTCGGAAAGAAAATG
GTTACATGGAGAAGCATTTAAATAAATTAAGGGCGCAAGACAAGATGTGTGCAATCATACGAGCA
CTAATGCACCGGATCCCATCAGAACTCCGTAGTGAAGTGTGCTTGGGCGAGAGTAGTACTAGGAT
GGGTGACCTCCTGGGAAGTCCTCATGTTACAC
Found at i:2465515 original size:292 final size:290
Alignment explanation
Indices: 2464722--2467854 Score: 1484
Period size: 292 Copynumber: 10.7 Consensus size: 290
2464712 TAATCATGCC
* * * * * * **
2464722 TGGGTGAGAGTAGTACTAGGATTGGCGACCTCTTGGAGAGTCCTCGTGTTGTGCA-CCCCTTTTT
1 TGGGCGAGAGTAGTACTAGGA-TAGTGACCTCCTGGAAAGTCCTTGTG-T-TGCATCCTTTTTTT
* * ** * *
2464786 CAAAACTTTGTACTTTATCATAATTTTTGGTGTTGTTTTTTTAAAGAGTCGGGGTGGAACGAGC-
63 CAAAA-TTTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCG
* * * * *
2464850 GATAAAAGATTTGGGGATCAAAAAATTAAATATTTTAAGGATTAGTCAGAAGAAAATGGTTACTT
127 GA-AAAAGATTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTACAT
* * * *
2464915 GGAGAAGTGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATAC-AACACAAATTC
191 GGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAATGC
* ** *
2464979 ATCGGATCCTATCATAACTTTGCAAGTAAGCGTGCT
256 ATCGGATCCCATCATAACTCCG-TAGTAAGCGTGCT
* * * * * * *
2465015 TGCGCGAGAGAATTACTAGAATGGGTGACCTCTTCGAAAGTCCTTGTGTTGCATCCATTTTTTTC
1 TGGGCGAGAGTAGTACTAGGAT-AGTGACCTCCTGGAAAGTCCTTGTGTTGCATCC-TTTTTTTC
*
2465080 AAAATTCTATA-TTTATCTTT-A-TTTTGGTGTTCTTTTTTTCAAAAGAGC-CGGGGTGGAACGA
64 AAAATT-TATATTTTAT-TTTAATTTTTGGTGTT-GTTTTTT-AAAAGA-CTCGGGGTGGAACGA
* * * ** ** *
2465141 GCTGG-AAATGAGTCAAGGATCGTAAAATTAAATATTTTAAGGATTAGTCGGAAGAAATTGGTTA
124 GC-GGAAAAAGATTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTA
* * * * *
2465205 CATGGAGAAGCATTTAAATTAATTAAGGGTGCAAGACATGATGGGTGCGATCATACGAGCACTAA
188 CATGGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAA
*
2465270 TGCATCGGATCCCATCATAACTCCGTAGTAAAGCGTGTT
253 TGCATCGGATCCCATCATAACTCCGTAGT-AAGCGTGCT
* * * *
2465309 TAGGCGAGAGTAGTACTCGGATACGTGACCTCCTGGAAAGCCCTTGTATTGCATCCTTTTTTTC-
1 TGGGCGAGAGTAGTACTAGGATA-GTGACCTCCTGGAAAGTCCTTGTGTTGCATCCTTTTTTTCA
** * * * *
2465373 AAATCTTATATTTTATTTTAATTTTTGGAATTGTTTTTTAATATACTCGGTGTGGATCGAGCGGA
65 AAAT-TTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCGGA
* * * * * * *
2465438 AAAGGATTTGAGGATCGCAAAACTAAATATTTTACGAATTAGTCAAAAGAAAATGGTTAAATGGA
129 AAAAGATTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTACATGGA
** * ** * * * * *
2465503 GAAGCGTTTAAATAAATTAAGGGATCAAGACATGATATGTGTGATCATTCGAGAATTAAAGCACC
194 GAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAATGCATC
* * *
2465568 GGATCCCATCAGAACTCCCTAGTGAAGTGTGCT
259 GGATCCCATCATAACTCCGTAGT-AAGCGTGCT
* * * * * *
2465601 TGGGTGAAAGTAATACTAGGATAGTGACCTCCTGGGAAGTCCTCGTGTTGCTTCCCTATTTTTTC
1 TGGGCGAGAGTAGTACTAGGATAGTGACCTCCTGGAAAGTCCTTGTGTTGCAT-CCT-TTTTTTC
* * * ** *
2465666 AAAATTT-TATCCTTATCTTAA-TTTT--TGTT-CTTTTTAAAAGAGGCGAGGTGGAACGAGCGG
64 AAAATTTATAT-TTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCGG
* * * *
2465726 AAAAAG-TGTCGGGGATCACAAAATTAATTATTTTAGGGATTAGT-AAGAAGAAAATTGTTACAT
128 AAAAAGAT-TCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAA-AAGAAAATGGTTACAT
* * * * * *
2465789 GGAGCA-CTGTTTAAATAAATTAAGGACACAATACATGATGGGTTCAATCATA-GTAGCACTAAT
191 GGAGAAGC-GTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACG-AGCACTAAT
* * ** *
2465852 GCAGCGGATCCCATCAAAACTTTGTTGTTAAGCGTGCT
254 GCATCGGATCCCATCATAACTCCGTAG-TAAGCGTGCT
* * * * * * * *
2465890 TGGGTGAGAGTAGTATTATTG-TGGGTGATCTCCT-TAAATGTCATCGTGTTGCA-CCTTTTTTT
1 TGGGCGAGAGTAGTACTA-GGAT-AGTGACCTCCTGGAAA-GTCCTTGTGTTGCATCC-TTTTTT
* * * * *
2465952 TCCAAAATTCTATCTTTTA----AATTTTTTGGTGTTGTATTCTTTAAAATAGTTGGGTTGGAAC
62 T-CAAAATT-TATATTTTATTTTAA-TTTTTGGTGTTGT-TT-TTTAAAAGACTCGGGGTGGAAC
* * * * * ** * * *** *
2466013 AAGCAGG-ACATGAGTAGAGGAT-TGAAAACTAAATATTTTAATGATTAGTTGGAAGAAAATGGA
122 GAGC-GGAAAAAGATTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGT
* * * * * * * * * * * *
2466076 TACAGGGAGGAGTGTTTAAGA-AAAATAATGGTG-ACAGACATAATGGGAGCTATCACACAAG-A
186 TACATGGAGAAGCGTTTAA-ATAAATTAAGGGCGCA-AGACATGATAGGTGCAATCATACGAGCA
* * * * * ** * ***
2466138 TCTAATTCACCGGATCCCATTAGAATTTTGCAGTTAAAAATG-T
249 -CTAATGCATCGGATCCCATCATAACTCCGTAG-TAAGCGTGCT
* * * * * * *
2466181 TAGGGTGAGAGTTGTACTAGGATTAGAGACCGCTTGGAAAGTCC-----TCGCCT-C-TTTTTTC
1 T-GGGCGAGAGTAGTACTAGGA-TAGTGACCTCCTGGAAAGTCCTTGTGTTGCATCCTTTTTTTC
* * * ** * * * * * *
2466239 GAAACTCTATACTTTATCATAATTTTTGTTGTCGTTTTTT-AAAGAATCAGGGTAGAACGAG-TG
64 -AAAATTTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCGG
* * * *
2466302 ATAAAAGAGTCTGA-GATCTA-AAAATTAAATATTTTAATGATTATTCAGAAGAAAATGGTTACA
128 A-AAAAGATTC-GAGGATC-ACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTACA
* * * * * * *
2466365 TAGAGAAGCATTTAAATAATTTAAGGGCGCAAGACATGATAGGTGCGATCATACCAACACAAATG
190 TGGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAATG
* * * *** * *
2466430 CATCAGATCCTATCAGAACTTTTTAATTAAGCGTTCT
255 CATCGGATCCCATCATAACTCCGT-AGTAAGCGTGCT
* * * * * * * *
2466467 T-GACGAAAGAATTACTAGGATAGGTGACCTCTTCGAAAGTCCTTATGTTGCATCCCTCTTTTTC
1 TGGGCGAGAGTAGTACTAGGATA-GTGACCTCCTGGAAAGTCCTTGTGTTGCAT-CCTTTTTTTC
* * * * *** ** * * *
2466531 AAAATTTTATAGTTTGTCTTAATATTTGGTGCACTTTTCACCAAAAGAGTCAGGGTGGAATGAGT
64 AAAA-TTTATATTTTATTTTAATTTTTGGTGTTGTTTT--TTAAAAGACTCGGGGTGGAACGAG-
** * ** * ** *
2466596 C-GAAAATTAGTC-AGGGATCGTAAAATTAAATA-TTTATGGATTAGTCGGAAGAAAATGGTTAA
125 CGGAAAAAGATTCGA-GGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTAC
* * * * * *
2466658 ATGAAGAAGTGTTTAAATAAATTAAGGGTGCAAGACATGATGTATGTGGC---CATACGAGCGCA
189 ATGGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGA--TAGGT-GCAATCATACGAGCACT
* * * *
2466720 AATGCA-CTGAATCCCATCAGAACTCCGTAGTAAAGGGTGTT
251 AATGCATC-GGATCCCATCATAACTCCGTAGT-AAGCGTGCT
* * * * * * * * * * *
2466761 TAGGAGATAGTAGTTCTAAGATGGGTGACCTCCTGGAAAG-CTCTTCTATTACCTCTTTTTTTTT
1 TGGGCGAGAGTAGTACTAGGAT-AGTGACCTCCTGGAAAGTC-CTTGTGTTGCATC-CTTTTTTT
* * * * * ** * * * **
2466825 CAAAACTTATATATTCTTTTAATTTTTGGTATT-TGTTTTATTAGACTCAGTGTGGATCGAGTAG
63 CAAAATTTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCGG
* * ** * * * * *
2466889 AAAAGGAGTT-GGGGATCGTAAAACTAAATATTTTACGGAATAGT-AAAA-AAAA-GGTTATACG
128 AAAAAGA-TTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTACATG
* * * * * * *
2466950 GAGCAGCATTTAAATAAATTAAGGGCACAAGACATGATGGGTGCAATCAAACCAGTACTAATGCA
192 GAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAATGCA
** * * * *
2467015 T-TAAGTCTCATCAGAACTCCGCAGTGAAGTGTGCT
257 TCGGA-TCCCATCATAACTCCGTAGT-AAGCGTGCT
* * * * * *
2467050 TGGGTGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGT-CTTCGTGTTGCACCCCTATTATT
1 TGGGCGAGAGTAGTACTAGGAT-AGTGACCTCCTGGAAAGTCCTT-GTGTTGCA-TCCT-TTTTT
* * * * * * * * * * **
2467114 TCAAAATTTTATACTTTATCTGAGTATTTGGAGTTATTTTTTTAAAGAGTCGGGGTTGAACGATT
62 TCAAAA-TTTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGC
* ** * * *
2467179 GGAAAAAG-TGCCTTGGATCACAAAA-AACAATATTTT-AGTATTAGTCGAAAGAAAATGGTTTA
126 GGAAAAAGAT-TCGAGGATCACAAAATTA-AATATTTTAAGGATTAGTCAAAAGAAAATGG-TTA
* * * * **
2467241 -ATGGAGAA-CG-TTAAATAAATTAAAGGCACAAGGCATGAT-GTTTGTGATCATACGAGCACTA
188 CATGGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAG-GTGCAATCATACGAGCACTA
* * ** ** **
2467302 ATGCACCGGATCCCTTCAGCACTCTATAGTGAAGTTTGCT
252 ATGCATCGGATCCCATCATAACTCCGTAGT-AAGCGTGCT
* * * * * * *
2467342 TAGGAGAGAGTAGTACTAGGATGGATGACCTACT-AAGAAGTCCTCGTGTTCCATCCCTCTTTTT
1 TGGGCGAGAGTAGTACTAGGATAG-TGACCTCCTGGA-AAGTCCTTGTGTTGCAT-CCT-TTTTT
* ** * * * * *
2467406 TTAAAATTTTATACCTTATCTTAATTTTTGTTTTTTGTTTTTTTAATAGA--CGAGGTGGAACGA
62 TCAAAA-TTTATATTTTATTTTAATTTTTG-GTGTTG-TTTTTTAAAAGACTCGGGGTGGAACGA
* * * * * * * * ** *
2467469 GCGGGAAAAG-TGTCAAGGATGATAAAATTAACTATTTTAAGGATTACTCAGAAGAAATTTTTTT
124 GCGGAAAAAGAT-TCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTA
* * * * * * * *
2467533 CATGGAGTAGTGTTTAGATAAATTAAGGGCACAATACATGATGGGTTCAATCATACCAGCACTAA
188 CATGGAGAAGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAA
* * * * **
2467598 TGCACCGGATCCCATCAGAACTTCGTAGCGAATTGTGCT
253 TGCATCGGATCCCATCATAACTCCGTAG-TAAGCGTGCT
* ** * * * * **
2467637 TGGGTGAGAGTAGTTTTATGATGGGTGACCTCCTGGGATGTCCTTGTGTTGCA-CCCCTTTTTCA
1 TGGGCGAGAGTAGTACTAGGAT-AGTGACCTCCTGGAAAGTCCTTGTGTTGCATCCTTTTTTTCA
* * * * *
2467701 AAATTTTATATTTTAACTTT-ATTTTTGGCGTTGTTTTCTTTAAAAGAGAT-GGGTTGGAACAAG
65 AAA-TTTATATTTT-ATTTTAATTTTTGGTGTTG-TTT-TTTAAAAGA-CTCGGGGTGGAACGAG
* * * * * * * *** * *
2467764 CAGAACATGAGTT-GAGGATC-GAAAACTATATATTTTAATGATTAGTTGGAAGAAAATAGATAC
125 CGGAAAAAGA-TTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTAC
*
2467827 ACGGAGAAGCGTTTAAA-AATATTAAGGG
189 ATGGAGAAGCGTTTAAATAA-ATTAAGGG
2467855 TGACATACAT
Statistics
Matches: 2135, Mismatches: 561, Indels: 288
0.72 0.19 0.10
Matches are distributed among these distances:
282 1 0.00
283 2 0.00
284 61 0.03
285 115 0.05
286 11 0.01
287 18 0.01
288 24 0.01
289 289 0.14
290 49 0.02
291 129 0.06
292 635 0.30
293 341 0.16
294 248 0.12
295 200 0.09
296 10 0.00
297 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (290 bp):
TGGGCGAGAGTAGTACTAGGATAGTGACCTCCTGGAAAGTCCTTGTGTTGCATCCTTTTTTTCAA
AATTTATATTTTATTTTAATTTTTGGTGTTGTTTTTTAAAAGACTCGGGGTGGAACGAGCGGAAA
AAGATTCGAGGATCACAAAATTAAATATTTTAAGGATTAGTCAAAAGAAAATGGTTACATGGAGA
AGCGTTTAAATAAATTAAGGGCGCAAGACATGATAGGTGCAATCATACGAGCACTAATGCATCGG
ATCCCATCATAACTCCGTAGTAAGCGTGCT
Found at i:2465810 original size:585 final size:579
Alignment explanation
Indices: 2464806--2465904 Score: 1218
Period size: 585 Copynumber: 1.9 Consensus size: 579
2464796 TACTTTATCA
** * *
2464806 TAATTTTTGGTGTTGTTTTTTTAAAGAGTCGGGGTGGAACGAGCGATAAAAGATTTGGGGATCAA
1 TAATTTTTGGAATTGTTTTTTTAAAGACTCGGGGTGGAACGAGCGATAAAAGATTTGAGGATCAA
* * * ** *
2464871 AAAATTAAATATTTTAAGGATTAGTCAGAAGAAAATGGTTACTTGGAGAAGTGTTTAAATAAATT
66 AAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAATT
* * * * * **
2464936 AAGGGCGCAAGACATGATAGGTGCAATCATACAACACAAATTCATCGGATCCTATCATAACTTTG
131 AAGGGAGCAAGACATGATAGGTGCAATCATACAACACAAATGCACCGGATCCCATCAGAACTTCC
* * * *
2465001 CAAGTAAGCGTGCTTGCGCGAGAGAATTACTAGAATGGGTGACCTCTTCGAAAGTCCTTGTGTTG
196 CAAGTAAGCGTGCTTGCGCGAAAGAATTACTAGAATGAGTGACCTCCTCGAAAGTCCTCGTGTTG
* * *
2465066 CATCCATTTTTTTCAAAATTCTATATTTATCTTTATTTTGGTGTTCTTTTTTTCAAAAGAGCCGG
261 CATCCATTTTTTTCAAAATTCTATACTTATCTTAATTTT-GTGTTC-TTTTTTCAAAAGAGCCGA
* ** **
2465131 GGTGGAACGAGCTGGAAATGAGTCAAGGATCGTAAAATTAAATATTTTAAGGATTAGTCGGAAGA
324 GGTGGAACGAGCTGGAAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGTAAGAAGA
*** *
2465196 AATTGGTTACATGGAGAAGCATTTAAATTAATTAAGGGTGCAAGACATGATGGGTGCGATCATAC
389 AATTGGTTACATGGAGAAGCATTT--A--AATTAAGGACACAAGACATGATGGGTGCAATCATA-
* * *
2465261 G-AGCACTAATGCATCGGATCCCATCATAACTCCGTAGTAAAGCGTGTTTAGGCGAGAGTAGTAC
449 GTAGCACTAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGAGAGTAGTAC
2465325 TCGGATACGTGACCTCCTGGAAAGCCCTTGTATTGCATCCTTTTTTTCAAATCTTATATTTTATT
514 TCGGATACGTGACCTCCTGGAAAGCCCTTGTATTGCATCCTTTTTTTCAAATCTTATATTTTATT
2465390 T
579 T
* * * *
2465391 TAATTTTTGGAATTG-TTTTTTAATATACTCGGTGTGGATCGAGCGGA-AAAGGATTTGAGGATC
1 TAATTTTTGGAATTGTTTTTTTAA-AGACTCGGGGTGGAACGAGC-GATAAAAGATTTGAGGATC
** *
2465454 GCAAAACTAAATATTTTACGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAA
64 AAAAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAA
* * ** * *
2465519 TTAAGGGATCAAGACATGATATGTGTGATCATTCGAGA-ATTAAA-GCACCGGATCCCATCAGAA
129 TTAAGGGAGCAAGACATGATAGGTGCAATCATAC-A-ACA-CAAATGCACCGGATCCCATCAGAA
* * * * * * *
2465582 C-TCCCTAGTGAAGTGTGCTTGGGTGAAAGTAA-TACTAGGAT-AGTGACCTCCTGGGAAGTCCT
191 CTTCCCAAGT-AAGCGTGCTTGCGCGAAAG-AATTACTAGAATGAGTGACCTCCTCGAAAGTCCT
* * * *
2465644 CGTGTTGCTTCCCTATTTTTTCAAAATTTTATCCTTATCTTAATTTT-TGTTC-TTTTT-AAAAG
254 CGTGTTGCATCCAT-TTTTTTCAAAATTCTATACTTATCTTAATTTTGTGTTCTTTTTTCAAAAG
* * ** * *
2465706 AGGCGAGGTGGAACGAGC-GGAAAAAGTGTCGGGGATCACAAAATTAATTATTTTAGGGATTAGT
318 AGCCGAGGTGGAACGAGCTGG-AAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGT
* * * *
2465770 AAGAAGAAAATT-GTTACATGGAGCA-CTGTTTAAATAAATTAAGGACACAATACATGATGGGTT
382 AAGAAG-AAATTGGTTACATGGAGAAGC--ATT---TAAATTAAGGACACAAGACATGATGGGTG
** * * * *
2465833 CAATCATAGTAGCACTAATGCAGCGGATCCCATCAAAACTTTGTTGTTAAGCGTGCTTGGGTGAG
441 CAATCATAGTAGCACTAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGAG
2465898 AGTAGTA
506 AGTAGTA
2465905 TTATTGTGGG
Statistics
Matches: 422, Mismatches: 76, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
580 4 0.01
581 154 0.36
582 12 0.03
583 1 0.00
584 13 0.03
585 161 0.38
586 71 0.17
587 6 0.01
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (579 bp):
TAATTTTTGGAATTGTTTTTTTAAAGACTCGGGGTGGAACGAGCGATAAAAGATTTGAGGATCAA
AAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAATT
AAGGGAGCAAGACATGATAGGTGCAATCATACAACACAAATGCACCGGATCCCATCAGAACTTCC
CAAGTAAGCGTGCTTGCGCGAAAGAATTACTAGAATGAGTGACCTCCTCGAAAGTCCTCGTGTTG
CATCCATTTTTTTCAAAATTCTATACTTATCTTAATTTTGTGTTCTTTTTTCAAAAGAGCCGAGG
TGGAACGAGCTGGAAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGTAAGAAGAAA
TTGGTTACATGGAGAAGCATTTAAATTAAGGACACAAGACATGATGGGTGCAATCATAGTAGCAC
TAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGAGAGTAGTACTCGGATA
CGTGACCTCCTGGAAAGCCCTTGTATTGCATCCTTTTTTTCAAATCTTATATTTTATTT
Found at i:2465953 original size:581 final size:583
Alignment explanation
Indices: 2464806--2465904 Score: 1263
Period size: 581 Copynumber: 1.9 Consensus size: 583
2464796 TACTTTATCA
** * *
2464806 TAATTTTTGGTGTTGTTTTTTTAAAGAGTCGGGGTGGAACGAGCGATAAAAGATTTGGGGATCAA
1 TAATTTTTGGAATTGTTTTTTTAAAGACTCGGGGTGGAACGAGCGATAAAAGATTTGAGGATCAA
* * * ** *
2464871 AAAATTAAATATTTTAAGGATTAGTCAGAAGAAAATGGTTACTTGGAGAAGTGTTTAAATAAATT
66 AAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAATT
* * * * * **
2464936 AAGGGCGCAAGACATGATAGGTGCAATCATACAACACAAATTCATCGGATCCTATCATAACTTTG
131 AAGGGAGCAAGACATGATAGGTGCAATCATACAACACAAATGCACCGGATCCCATCAGAACTTCC
* * * *
2465001 CAAGTAAGCGTGCTTGCGCGAGAGAATTACTAGAATGGGTGACCTCTTCGAAAGTCCTTGTGTTG
196 CAAGTAAGCGTGCTTGCGCGAAAGAATTACTAGAATGAGTGACCTCCTCGAAAGTCCTCGTGTTG
* * *
2465066 CATCCATTTTTTTCAAAATTCTATATTTATCTTTATTTTGGTGTTCTTTTTTTCAAAAGAGCCGG
261 CATCCATTTTTTTCAAAATTCTATACTTATCTTAATTTT-GTGTTC-TTTTTTCAAAAGAGCCGA
* ** **
2465131 GGTGGAACGAGCTGGAAATGAGTCAAGGATCGTAAAATTAAATATTTTAAGGATTAGTCGGAAGA
324 GGTGGAACGAGCTGGAAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGTAAGAAGA
* *** *
2465196 AATTGGTTACATGGAGAAGCATTTAAATTAATTAAGGGTGCAAGACATGATGGGTGCGATCATAC
389 AATTGGTTACATGGAGAAGCATTTAAATAAATTAAGGACACAAGACATGATGGGTGCAATCATAC
* * *
2465261 GAGCACTAATGCATCGGATCCCATCATAACTCCGTAGTAAAGCGTGTTTAGGCGAGAGTAGTACT
454 GAGCACTAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGAGAGTAGTACT
* *
2465326 CGGATACGTGACCTCCTGGAAAGCCCTTGTATTGCATCCTTTTTTTCAAATCTTATATTTTATTT
519 CGGATACGTGACCTCCTGGAAAGCCATCGTATTGCATCCTTTTTTTCAAATCTTATATTTTATTT
* * * *
2465391 TAATTTTTGGAATTG-TTTTTTAATATACTCGGTGTGGATCGAGCGGA-AAAGGATTTGAGGATC
1 TAATTTTTGGAATTGTTTTTTTAA-AGACTCGGGGTGGAACGAGC-GATAAAAGATTTGAGGATC
** *
2465454 GCAAAACTAAATATTTTACGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAA
64 AAAAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAA
* * ** * *
2465519 TTAAGGGATCAAGACATGATATGTGTGATCATTCGAGA-ATTAAA-GCACCGGATCCCATCAGAA
129 TTAAGGGAGCAAGACATGATAGGTGCAATCATAC-A-ACA-CAAATGCACCGGATCCCATCAGAA
* * * * * * *
2465582 C-TCCCTAGTGAAGTGTGCTTGGGTGAAAGTAA-TACTAGGAT-AGTGACCTCCTGGGAAGTCCT
191 CTTCCCAAGT-AAGCGTGCTTGCGCGAAAG-AATTACTAGAATGAGTGACCTCCTCGAAAGTCCT
* * * *
2465644 CGTGTTGCTTCCCTATTTTTTCAAAATTTTATCCTTATCTTAATTTT-TGTTC-TTTTT-AAAAG
254 CGTGTTGCATCCAT-TTTTTTCAAAATTCTATACTTATCTTAATTTTGTGTTCTTTTTTCAAAAG
* * ** * *
2465706 AGGCGAGGTGGAACGAGC-GGAAAAAGTGTCGGGGATCACAAAATTAATTATTTTAGGGATTAGT
318 AGCCGAGGTGGAACGAGCTGG-AAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGT
* * * *
2465770 AAGAAGAAAATT-GTTACATGGAGCA-CTGTTTAAATAAATTAAGGACACAATACATGATGGGTT
382 AAGAAG-AAATTGGTTACATGGAGAAGC-ATTTAAATAAATTAAGGACACAAGACATGATGGGTG
** * * * *
2465833 CAATCATA-GTAGCACTAATGCAGCGGATCCCATCAAAACTTTGTTGTTAAGCGTGCTTGGGTGA
445 CAATCATACG-AGCACTAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGA
2465897 GAGTAGTA
509 GAGTAGTA
2465905 TTATTGTGGG
Statistics
Matches: 425, Mismatches: 77, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
580 4 0.01
581 161 0.38
582 10 0.02
584 13 0.03
585 160 0.38
586 71 0.17
587 6 0.01
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (583 bp):
TAATTTTTGGAATTGTTTTTTTAAAGACTCGGGGTGGAACGAGCGATAAAAGATTTGAGGATCAA
AAAACTAAATATTTTAAGAATTAGTCAAAAGAAAATGGTTAAATGGAGAAGCGTTTAAATAAATT
AAGGGAGCAAGACATGATAGGTGCAATCATACAACACAAATGCACCGGATCCCATCAGAACTTCC
CAAGTAAGCGTGCTTGCGCGAAAGAATTACTAGAATGAGTGACCTCCTCGAAAGTCCTCGTGTTG
CATCCATTTTTTTCAAAATTCTATACTTATCTTAATTTTGTGTTCTTTTTTCAAAAGAGCCGAGG
TGGAACGAGCTGGAAAAGAGTCAAGGATCACAAAATTAAATATTTTAAGGATTAGTAAGAAGAAA
TTGGTTACATGGAGAAGCATTTAAATAAATTAAGGACACAAGACATGATGGGTGCAATCATACGA
GCACTAATGCAGCGGATCCCATCAAAACTCCGTAGTAAAGCGTGCTTAGGCGAGAGTAGTACTCG
GATACGTGACCTCCTGGAAAGCCATCGTATTGCATCCTTTTTTTCAAATCTTATATTTTATTT
Found at i:2467972 original size:13 final size:13
Alignment explanation
Indices: 2467954--2467988 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
2467944 TTGTAAACCT
2467954 TTTGAAAGTCCTC
1 TTTGAAAGTCCTC
*
2467967 TTTGAAAGCCCTC
1 TTTGAAAGTCCTC
2467980 TTTGAAAGT
1 TTTGAAAGT
2467989 TCTCGTGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (13 bp):
TTTGAAAGTCCTC
Found at i:2471994 original size:27 final size:27
Alignment explanation
Indices: 2471964--2472018 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
2471954 CTCGTGTTGA
2471964 ACCCTTTTTTTCAATATTTTATACTTT
1 ACCCTTTTTTTCAATATTTTATACTTT
2471991 ACCCTTTTTTTCAATATTTTATACTTT
1 ACCCTTTTTTTCAATATTTTATACTTT
2472018 A
1 A
2472019 TCTTAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (27 bp):
ACCCTTTTTTTCAATATTTTATACTTT
Found at i:2473823 original size:20 final size:20
Alignment explanation
Indices: 2473795--2473836 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
2473785 AGAAAATGGT
2473795 TAAAAGGAGAAATGTTTAAA
1 TAAAAGGAGAAATGTTTAAA
* *
2473815 TAAATGGAGAAGTGTTTAAA
1 TAAAAGGAGAAATGTTTAAA
2473835 TA
1 TA
2473837 GAGTCAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (20 bp):
TAAAAGGAGAAATGTTTAAA
Found at i:2484552 original size:19 final size:19
Alignment explanation
Indices: 2484530--2484567 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
2484520 ATGCTAGAAA
2484530 GTATACTAAAATT-TGGATG
1 GTATA-TAAAATTATGGATG
*
2484549 GTATATATAATTATGGATG
1 GTATATAAAATTATGGATG
2484568 CTTGTGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.37, C:0.03, G:0.21, T:0.39
Consensus pattern (19 bp):
GTATATAAAATTATGGATG
Found at i:2485398 original size:31 final size:30
Alignment explanation
Indices: 2485339--2485408 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
2485329 ACAAGCCTTA
*
2485339 AAAAAAGTT-GGGGACCATTCTACAATTTT
1 AAAAAAGTTAGGGGACAATTCTACAATTTT
**
2485368 TGAAAAGTTAGGGGATCAATT-TACCAATTTT
1 AAAAAAGTTAGGGGA-CAATTCTA-CAATTTT
2485399 AAAAAAGTTA
1 AAAAAAGTTA
2485409 TGAATGATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 7 0.21
30 7 0.21
31 19 0.58
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (30 bp):
AAAAAAGTTAGGGGACAATTCTACAATTTT
Found at i:2488904 original size:18 final size:18
Alignment explanation
Indices: 2488855--2488906 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
2488845 GATCCACCTC
*
2488855 AAATGAAAAAAATATAAA
1 AAATCAAAAAAATATAAA
*
2488873 AAATTAAGATAAAATA-AAA
1 AAATCAA-A-AAAATATAAA
2488892 AATATCAAAAAAATA
1 AA-ATCAAAAAAATA
2488907 GGGGTGCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 12 0.41
19 7 0.24
20 10 0.34
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (18 bp):
AAATCAAAAAAATATAAA
Found at i:2490499 original size:581 final size:575
Alignment explanation
Indices: 2489580--2490854 Score: 1370
Period size: 581 Copynumber: 2.2 Consensus size: 575
2489570 TAGGATTCGG
* * * * *
2489580 TGCAGTAGTGCTGGTATGATCGTACCATCTTGGT-TTGCGACCATAATTTATTTAAATGCTTCTC
1 TGCATTAGTGCTGGTATGATCGCACCATCTT-GTCTTGCGCCCTTAATTTATTTAAACGCTTCTC
* * *
2489644 CATGTAACCATTTTCTTCTGACTAATCATTAAAATATTTAATTTAGTG-ATCCCCGACACTTTTC
65 CATGTAACCATTTTCTTCCGACTGATCCTTAAAATATTTAATTT--TGCATCCCCGACACTTTTC
* * *
2489708 CCACTTGTTCCACTCTGAATGGAAAAAACACAAAAATTAAGATAAAATATAAAATTTAAAAAAAA
128 CCACTCGTTCCACTCTGAAAGAAAAAAACACAAAAATTAAGATAAAATATAAAATTTAAAAAAAA
* * *
2489773 GAGGAGTGTAACACGAGGACTTCGTAGGACGTCACCCATCCTAGTACTACTCTTTCCCAATTACG
193 GAGGAGTGCAACACGAGGACTTCCTAGGACGTCACCCATCCTAGTACTACTCTTGCCCAATTACG
** * * **
2489838 TTTGACTGTGGAGTTCTAATGAGATCCAGTGTATTAGTGCTGGTATGAGCAAACCCATCATGCCT
258 CATGACTGTAGAGTTCTAATGAGAT-CAGTGCATTAGTGCTGGTATGAGCAAACAAATCATGCCT
* * * *
2489903 TACGCTCTAAATTTATTTAAACGCTTCTCTGTGTAACTATTTAT-TTGGCTAATCCTTAAACTAT
322 TACGCTCTAAATTTATTTAAACGCTTCTCTGTGTAACCATTT-TCTT-CCT-ATCATTAAAATAT
* * * *
2489967 TTAACTTTT-TGATCC-CTAGTTGTTTTCTCACTT-GTTGCACCCTAGATATT-TT-AAAAAA-A
384 TTAA-TTTTACGATCCTCGACTT-TTTTCTC-CTTCGTTCCACCC-AGATATTATTAAAAAAACA
*** * * *
2490026 CCAAATTTTAAGATAAAAT-TAAAA-ATT-AAAA-AGA-A-GAGTAAAATACGAGGACTTCCCAT
445 CCAAAAACTAAAATAAAATGTAAAATATTGAAAACA-ATAGGAGTAAAAGACGAGGACTTCCCAA
* * *
2490085 GAGGTCAACCATTC-TAGTACTACTCTCGCCCAAGCATGCTTCACTATGAAGTTCTGATGGGATC
509 GAGGTCAACCA-TCATAGTACTACTCTCGCCCAAGCACGCTTCACTACGAAGTTCTGATGAGATC
2490149 CAA
573 CAA
* * *
2490152 TG-ATTAGTGCTGGTATGATCGCATCTATCATGTCTTGCGCCCTTAATTTATTTAAACGATTCTC
1 TGCATTAGTGCTGGTATGATCGCA-CCATCTTGTCTTGCGCCCTTAATTTATTTAAACGCTTCTC
* * *
2490216 CATGTAACCATTTTCTTCCAACTGATCCTTAAAATATTTAATTTTGCAGT-CCCTATCTCTTTTC
65 CATGTAACCATTTTCTTCCGACTGATCCTTAAAATATTTAATTTTGCA-TCCCCGA-CACTTTTC
** *
2490280 CTGCTCGTTCCACCCCAATTCTTAAAGAAAAACAACACAAAAAATTAAGATAAAATATAAAATCT
128 CCACTCGTTCCA---C---TCTGAAAGAAAAA-AACAC-AAAAATTAAGATAAAATATAAAAT-T
* * ** **
2490345 TAAAAAAAAGAGGGGTGCAACATG-TTACCTTCCTAGGATTTCACCCATCCTAGTACTACTCTTG
184 TAAAAAAAAGAGGAGTGCAACACGAGGA-CTTCCTAGGACGTCACCCATCCTAGTACTACTCTTG
* * * **
2490409 CCCAATTACGCATGACTGTAGAGTTCTAATGGGAT-ATGATGCATTAGTGCTTGTATGATCGCAC
248 CCCAATTACGCATGACTGTAGAGTTCTAATGAGATCA-G-TGCATTAGTGCTGGTATGAGCAAAC
* * * *
2490473 AAATCATGTCTTGCAC-CTCT-AATTTATTTAAATGCTTCTTTGTGTAACCATTTTCTTCCTATT
311 AAATCATGCCTT--ACGCTCTAAATTTATTTAAACGCTTCTCTGTGTAACCATTTTCTTCCTATC
* * *
2490536 ATTAAAATATTTAATTTTACGATCCTCGACTTTTTTCTCGTTCGTTCCACCCCGATTTTATTAAA
374 ATTAAAATATTTAATTTTACGATCCTCGACTTTTTTCTCCTTCGTTCCACCCAGATATTATTAAA
* * ** * *
2490601 AAAACACCAAAAACTAAAATAAAATGTAAAATTTTGAAAACAATAGGGGTGCAAGATGAGGAGTT
439 AAAACACCAAAAACTAAAATAAAATGTAAAATATTGAAAACAATAGGAGTAAAAGACGAGGACTT
* * ** *
2490666 CCCAAGAGGTCAACCATCATGGTACTACTCTCGCCCAAGCACGCTTGACTACGGCGTTTTGATGA
504 CCCAAGAGGTCAACCATCATAGTACTACTCTCGCCCAAGCACGCTTCACTACGAAGTTCTGATGA
**
2490731 GATCCGG
569 GATCCAA
* *
2490738 TGCATTAGTGCTGGTATGATCGCACCCATCTTGTCATGCACCCTTAATTTATTTAAACGCTTCTC
1 TGCATTAGTGCTGGTATGATCGCA-CCATCTTGTCTTGCGCCCTTAATTTATTTAAACGCTTCTC
* * *
2490803 CATGTAATCATTTTCTTTCGACTGATCCTTAAAATATTTAGTTTTGCGATCC
65 CATGTAACCATTTTCTTCCGACTGATCCTTAAAATATTTAATTTTGC-ATCC
2490855 TGACTCTTTA
Statistics
Matches: 580, Mismatches: 87, Indels: 56
0.80 0.12 0.08
Matches are distributed among these distances:
570 2 0.00
571 26 0.04
572 90 0.16
575 1 0.00
578 21 0.04
579 42 0.07
580 39 0.07
581 162 0.28
582 9 0.02
583 4 0.01
584 5 0.01
585 4 0.01
586 73 0.13
587 100 0.17
588 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34
Consensus pattern (575 bp):
TGCATTAGTGCTGGTATGATCGCACCATCTTGTCTTGCGCCCTTAATTTATTTAAACGCTTCTCC
ATGTAACCATTTTCTTCCGACTGATCCTTAAAATATTTAATTTTGCATCCCCGACACTTTTCCCA
CTCGTTCCACTCTGAAAGAAAAAAACACAAAAATTAAGATAAAATATAAAATTTAAAAAAAAGAG
GAGTGCAACACGAGGACTTCCTAGGACGTCACCCATCCTAGTACTACTCTTGCCCAATTACGCAT
GACTGTAGAGTTCTAATGAGATCAGTGCATTAGTGCTGGTATGAGCAAACAAATCATGCCTTACG
CTCTAAATTTATTTAAACGCTTCTCTGTGTAACCATTTTCTTCCTATCATTAAAATATTTAATTT
TACGATCCTCGACTTTTTTCTCCTTCGTTCCACCCAGATATTATTAAAAAAACACCAAAAACTAA
AATAAAATGTAAAATATTGAAAACAATAGGAGTAAAAGACGAGGACTTCCCAAGAGGTCAACCAT
CATAGTACTACTCTCGCCCAAGCACGCTTCACTACGAAGTTCTGATGAGATCCAA
Found at i:2490788 original size:290 final size:294
Alignment explanation
Indices: 2488611--2490863 Score: 1148
Period size: 287 Copynumber: 7.8 Consensus size: 294
2488601 CGACTCTGTT
* * * * * * *
2488611 AAAAAAATAGGGGTGTAACACGAGGACTTCCCAGGAGGTCAACTATCCTAGTATTACTCTCGTCC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCAT-CTAGTACTACTCTCGCCC
* * * * * *
2488676 AAGCATGCTTCACTGTGGAGTTCTGATGGGATCCGGTG-ATTAGTGCTGGTATGATCACACCCAT
65 AAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAAT
* * ***
2488740 AATGTCTTACACCCTTAATTTATTTAATTTCTTCTCCATGTAACCATTTTCTTCTGACT-AGTCC
130 CATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTTC--ACTGA-TCC
* * * * * *
2488804 TTAAAATATTTAATTTTGTGATCGT-AACGCTTTTCCCGCTCGATCCA--CC---TC--AAATGA
192 TTAAAATATTTAATTTTGCGATCCTCGACTCTTTTCCTGCTCGTTCCACCCCAATTCTTAAA-GA
* * * * * * *
2488861 AAAA-AATATAAAAAATTAAGATAAAATAAAAAAT-ATC
256 AAAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
* * * * * * * *
2488898 AAAAAAATAGGGGTGCAACATTG-GGACTTTCGAGGAGCTC-ACCAATCCTAGTACTACCCTGGT
1 AAAAAAAGAGGGGTGCAACA-TGAGGACTTCCCAAGAGGTCAACC-AT-CTAGTACTACTCTCGC
* * * * * * * *
2488961 GCAAGCACGCTTGATTACGGAGTTCTGATGGGATTCGATACATTAGTGCTGGTAT-AACACACCC
63 CCAAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCA
* * * * * * * * *
2489025 ATCATGTTTTGCACCCATAATTTATCTAAATGGTACTCCAAGTAGCCATTTTCTTCCGACTAATC
128 ATCATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTT-C-ACTGATC
* * * * **** *
2489090 ATTAAAATATTTAATTTTGCGATCC-C-ATCTCTTTT-ATGCTCGTACTACCCTGGCTCATTTAA
191 CTTAAAATATTTAATTTTGCGATCCTCGA-CTCTTTTCCTGCTCGTTCCACCCCAATTC-TTAAA
** * * * * *
2489152 -AAAAAC-AC-C-AAAAGTTAAAATAAAGTGT--ATTTTTT
254 GAAAAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
* * * * * * * * * *
2489187 TAAAAAAG-GGTGCGAAACA--AGGACTTCCTAGGTGGTCACCCATTCTAGTATTACTCTTGCCC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCA-TCTAGTACTACTCTCGCCC
* *** * * ** *
2489249 AAGCACACTT-AGCTGCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGGTATGATAACACCCA
65 AAGCACGCTTGA-CTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAA
* * * * *
2489313 TCATGTCTTGCATCCTTAATTTATTTAAATAG-TTCTACATGTAACCATTTTATTCTAACTAATC
129 TCATGTCTTGCACCCTTAATTTATTTAAA-CGCTTCTCCATGTAACCATTTTCTTC--ACTGATC
* * * ** ** * * * * **
2489377 CTTAAAATATTTGATTTTACGATCCCCGAAACTTTTCCCACTCATTCCAGCCCGACTCATTTTTA
191 CTTAAAATATTTAATTTTGCGATCCTCGACTCTTTTCCTGCTCGTTCCACCCCAATTC--TTAAA
* * * * * * *
2489442 -AAAAACAACTCGAAAAATTAAGATATAGTATAAAATTTTGA
254 GAAAAACAACACAAAAAACTAAAATAAAATATAAAATCTT-A
* ** * * * * * * * *
2489483 AAAAAAA-A---GTGCAACATGAGGATTTAACAGGATGTC-ACCCTTTACATTACAACTTTCGTC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCATCT--AGTACTACTCTCGCC
* * ** * * * * * * *
2489543 CAAGCGCACTAAATTGTGGAGTTCTGATAGGATTCGGTGCAGTAGTGCTGGTATGATCGTACC-A
64 CAAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAA
* * * *
2489607 TCTTGGT-TTGCGA-CCATAATTTATTTAAATGCTTCTCCATGTAACCATTTTCTTCTGACTAAT
129 TCAT-GTCTTGC-ACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTTC--ACTGAT
* * * * * ** * * *
2489670 CATTAAAATATTTAATTTAGTGATCCCCGACACTTTTCCCACTTGTTCCA---C---TCTGAATG
190 CCTTAAAATATTTAATTTTGCGATCCTCGACTCTTTTCCTGCTCGTTCCACCCCAATTCTTAAAG
* * *
2489729 GAAAA-AACAC-AAAAATTAAGATAAAATATAAAAT-TTA
255 AAAAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
* * * ** * * * **
2489766 AAAAAAAGAGGAGTGTAACACGAGGACTTCGTAGGACGTCACCCATCCTAGTACTACTCTTTCCC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCAT-CTAGTACTACTCTCGCCC
** * * * * * * ** *
2489831 AATTACGTTTGACTGTGGAGTTCTAATGAGATCC-AGTGTATTAGTGCTGGTATGAGCAAACCCA
65 AAGCACGCTTGACTATGGAGTTCTGATGGGATCCGA-TGCATTAGTGCTGGTATGATCGCACCAA
* * * * * ** * ** *
2489895 TCATGCCTTACGCTCTAAATTTATTTAAACGCTTCTCTGTGTAACTATTTAT-TTGGCTAATCCT
129 TCATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTT-TCTTCACTGATCCT
* * * * * * * * *
2489959 TAAACTATTTAACTTTT-TGATCC-CTAGT-TGTTTTCTCACTTGTTGCACCCTAGATAT-TT--
193 TAAAATATTTAA-TTTTGCGATCCTCGACTCT-TTTCCT-GCTCGTTCCACCCCA-AT-TCTTAA
* *** * *
2490018 -TAAAAA-AAC-C-AAATTTTAAGATAAAAT-TAAAA-ATTA
253 AGAAAAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
* ** * * *
2490054 AAAAGAAGA---GTAAAATACGAGGACTTCCCATGAGGTCAACCATTCTAGTACTACTCTCGCCC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCA-TCTAGTACTACTCTCGCCC
* * * * * *
2490116 AAGCATGCTTCACTATGAAGTTCTGATGGGATCCAATG-ATTAGTGCTGGTATGATCGCATCTAT
65 AAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAAT
* *
2490180 CATGTCTTGCGCCCTTAATTTATTTAAACGATTCTCCATGTAACCATTTTCTTCCAACTGATCCT
130 CATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTT-C-ACTGATCCT
*
2490245 TAAAATATTTAATTTTGC-AGTCC-CTATCTCTTTTCCTGCTCGTTCCACCCCAATTCTTAAAGA
193 TAAAATATTTAATTTTGCGA-TCCTCGA-CTCTTTTCCTGCTCGTTCCACCCCAATTCTTAAAGA
* *
2490308 AAAACAACACAAAAAATTAAGATAAAATATAAAATCTTA
256 AAAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
** * * ** * *
2490347 AAAAAAAGAGGGGTGCAACATG-TTACCTTCCTAGGATTTCACCCATCCTAGTACTACTCTTGCC
1 AAAAAAAGAGGGGTGCAACATGAGGA-CTTCCCAAGAGGTCAACCAT-CTAGTACTACTCTCGCC
** * * * * ** * *
2490411 CAATTACGCATGACTGTAGAGTTCTAATGGGATATGATGCATTAGTGCTTGTATGATCGCACAAA
64 CAAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAA
* *** **
2490476 TCATGTCTTGCA-CCTCTAATTTATTTAAATGCTTCTTTGTGTAACCATTTTCTTC-CT-ATTAT
129 TCATGTCTTGCACCCT-TAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTTCACTGATCCT
* * * * **
2490538 TAAAATATTTAATTTTACGATCCTCGACT-TTTTTCTCGTTCGTTCCACCCCGATT-TT-ATTAA
193 TAAAATATTTAATTTTGCGATCCTCGACTCTTTTCCT-GCTCGTTCCACCCCAATTCTTAAAGAA
* * * *
2490600 AAA-AACACCAAAAACTAAAATAAAATGTAAAATTTTG
257 AAACAACACAAAAAACTAAAATAAAATATAAAATCTTA
* * * * *
2490637 AAAACAATAGGGGTGCAAGATGAGGAGTTCCCAAGAGGTCAACCATCATGGTACTACTCTCGCCC
1 AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCATC-TAGTACTACTCTCGCCC
* * * * * *
2490702 AAGCACGCTTGACTACGGCGTTTTGATGAGATCCGGTGCATTAGTGCTGGTATGATCGCACCCAT
65 AAGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAAT
* * *
2490767 CTTGTCATGCACCCTTAATTTATTTAAACGCTTCTCCATGTAATCATTTTCTTTCGACTGATCCT
130 CATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTC-TTC-ACTGATCCT
*
2490832 TAAAATATTTAGTTTTGCGATCCT-GACTCTTT
193 TAAAATATTTAATTTTGCGATCCTCGACTCTTT
2490864 AAAAAACATC
Statistics
Matches: 1502, Mismatches: 361, Indels: 199
0.73 0.18 0.10
Matches are distributed among these distances:
283 9 0.01
284 69 0.05
285 106 0.07
286 156 0.10
287 336 0.22
288 101 0.07
289 42 0.03
290 197 0.13
291 33 0.02
292 20 0.01
293 83 0.06
294 131 0.09
295 80 0.05
296 74 0.05
297 65 0.04
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (294 bp):
AAAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCAACCATCTAGTACTACTCTCGCCCA
AGCACGCTTGACTATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCAATC
ATGTCTTGCACCCTTAATTTATTTAAACGCTTCTCCATGTAACCATTTTCTTCACTGATCCTTAA
AATATTTAATTTTGCGATCCTCGACTCTTTTCCTGCTCGTTCCACCCCAATTCTTAAAGAAAAAC
AACACAAAAAACTAAAATAAAATATAAAATCTTA
Found at i:2501336 original size:81 final size:81
Alignment explanation
Indices: 2501201--2501839 Score: 913
Period size: 81 Copynumber: 7.9 Consensus size: 81
2501191 CTGTTTTAAA
* * *
2501201 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAGTTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
2501266 GTTAAATACCTTTAAG
66 GTTAAATACCTTTGAG
* * * * *
2501282 TAAAACACTAATGGCCTAGATGTGCATTTGACAAAAATGTGTTAATTATTCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
2501347 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
2501363 TAAACGATTAATGGCCTAGTTGTGCATTTGACATAAATGTGTCAATTACGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
2501428 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
2501444 TAAAAGAATAATGGCCTAGATGTGGATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
2501509 GTTAAATACCTTTTAG
66 GTTAAATACCTTTGAG
** *
2501525 TAAAAGATTAATGGCCTATTTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
2501590 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
2501606 TAAAAGATTAATGGCCAAGCTGTTCATTTGATAGAAAA-GTGTCAATTATGCCAGTTAGATGAAA
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACA-AAAAGGTGTCAATTATGCCAGTTAGATGAAA
* * *
2501670 GGTTTAATACGTGTGAG
65 GGTTAAATACCTTTGAG
* * * *
2501687 TAAAATATTAATGGTCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGACAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
2501752 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
2501768 TAATATAATAATTGTCTAGATGTGCATTTGACATAAAA-GTGTCAATTATGCCAGTTAGATGAAA
1 TAAAAGATTAATGGCCTAGATGTGCATTTGACA-AAAAGGTGTCAATTATGCCAGTTAGATGAAA
2501832 GGTTAAAT
65 GGTTAAAT
2501840 GATTTTGGGT
Statistics
Matches: 501, Mismatches: 54, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
80 4 0.01
81 490 0.98
82 7 0.01
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGATGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:2513491 original size:5 final size:5
Alignment explanation
Indices: 2513483--2513515 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
2513473 TTTAATAAAA
2513483 TATTT TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TATTT TAT
2513516 CATCTTGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:2514620 original size:16 final size:16
Alignment explanation
Indices: 2514577--2514620 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
2514567 AAAAATTAAA
2514577 ATTAAAATTTA-TATT
1 ATTAAAATTTATTATT
*
2514592 ATATAAAAATTATTATT
1 AT-TAAAATTTATTATT
*
2514609 ATTATAATTTAT
1 ATTAAAATTTAT
2514621 AAGTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 2 0.08
16 16 0.67
17 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTAAAATTTATTATT
Found at i:2514923 original size:36 final size:35
Alignment explanation
Indices: 2514876--2514946 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
2514866 GCTTTACATA
*
2514876 CTATTTTTAATAAAGTTTAGTGACCATAATTACGTT
1 CTATTTTTAATAAAGTTTAGTAACCATAATT-CGTT
*
2514912 CTATTTTTAATAAAGTTTGGTAACCATAATTCGTT
1 CTATTTTTAATAAAGTTTAGTAACCATAATTCGTT
2514947 AGGATGTAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 4 0.12
36 29 0.88
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (35 bp):
CTATTTTTAATAAAGTTTAGTAACCATAATTCGTT
Found at i:2515661 original size:31 final size:31
Alignment explanation
Indices: 2515624--2515687 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
2515614 AATACATAAA
2515624 ATATGGTCACCTTCT-TTTTTATTTAATTAAG
1 ATATGGTCA-CTTCTGTTTTTATTTAATTAAG
*
2515655 ATATGGTCACTTTTGTTTTTATTTAATTAAG
1 ATATGGTCACTTCTGTTTTTATTTAATTAAG
2515686 AT
1 AT
2515688 GATGTCTGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.53
Consensus pattern (31 bp):
ATATGGTCACTTCTGTTTTTATTTAATTAAG
Found at i:2516429 original size:32 final size:31
Alignment explanation
Indices: 2516387--2516471 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 31
2516377 AGAAAGTTCG
* *
2516387 GGGCCACAGGGCCTACCTAAGAACACATCTTA
1 GGGCCGCAGGGCCTACCTAAGAA-ACATCTCA
* ** **
2516419 GGGCCGCAGGGTCTACCCGAGAATGATCTCA
1 GGGCCGCAGGGCCTACCTAAGAAACATCTCA
* *
2516450 GGGCCGTAGAGCCTACCTAAGA
1 GGGCCGCAGGGCCTACCTAAGA
2516472 GTCACATTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
31 22 0.54
32 19 0.46
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.15
Consensus pattern (31 bp):
GGGCCGCAGGGCCTACCTAAGAAACATCTCA
Found at i:2522019 original size:20 final size:20
Alignment explanation
Indices: 2521996--2522048 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
2521986 TACTTGACCC
2521996 TAGGGTATCGATATTGAAAG
1 TAGGGTATCGATATTGAAAG
* *
2522016 TAGGGTATTGATATTGTAAG
1 TAGGGTATCGATATTGAAAG
*
2522036 TAGAGTATCGATA
1 TAGGGTATCGATA
2522049 CTACTAACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (20 bp):
TAGGGTATCGATATTGAAAG
Found at i:2524459 original size:41 final size:41
Alignment explanation
Indices: 2524418--2524739 Score: 182
Period size: 41 Copynumber: 7.9 Consensus size: 41
2524408 TATTGCATGA
* * *
2524418 TACCATGATTGAATCCAATTGGATGATGAACTATTATATGA
1 TACCATGATTGAATCAAATTGAATGATGAACTATTATATGC
* * ** ** * * **
2524459 TGCCTTGATTGAATTGAATCAAATCATGATCTATTGCATGC
1 TACCATGATTGAATCAAATTGAATGATGAACTATTATATGC
** * * *
2524500 TACCATGATCAAATCAAATTAAAGGATAAACTATTATATGC
1 TACCATGATTGAATCAAATTGAATGATGAACTATTATATGC
* ** * * *
2524541 TACCTTGATTGAATTGAATCGAATGTTG-ACTTATTACATGC
1 TACCATGATTGAATCAAATTGAATGATGAAC-TATTATATGC
* * *
2524582 TACCATGATCGAATCAAATTGAAGGATAAACTATTATATGC
1 TACCATGATTGAATCAAATTGAATGATGAACTATTATATGC
* ** * ** * **
2524623 AACTTTGATTGAA-CTGAATCAAATGATGAATTATTGCATGC
1 TACCATGATTGAATC-AAATTGAATGATGAACTATTATATGC
* * ***
2524664 TACCATGATCGAATCAAGTTGAATGAT-AATCTATCGCATGC
1 TACCATGATTGAATCAAATTGAATGATGAA-CTATTATATGC
* ** * *
2524705 TACCATGATCGAATCAAGCTGAATGTTGATCTATT
1 TACCATGATTGAATCAAATTGAATGATGAACTATT
2524740 GCATGCTGCC
Statistics
Matches: 204, Mismatches: 71, Indels: 12
0.71 0.25 0.04
Matches are distributed among these distances:
40 5 0.02
41 195 0.96
42 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (41 bp):
TACCATGATTGAATCAAATTGAATGATGAACTATTATATGC
Found at i:2524547 original size:82 final size:82
Alignment explanation
Indices: 2524408--2524746 Score: 369
Period size: 82 Copynumber: 4.1 Consensus size: 82
2524398 ATAAATTGGT
* * * * * * * *
2524408 TATTGCATGATACCATGATTGAATCCAATTGGATGATGAACTATTATATGATGCCTTGATTGAAT
1 TATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCTACCTTGATTGAAT
*
2524473 TGAATCAAATCATGATC
66 TGAATCAAATGATGATC
* *
2524490 TATTGCATGCTACCATGATCAAATCAAATTAAAGGATAAACTATTATATGCTACCTTGATTGAAT
1 TATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCTACCTTGATTGAAT
* *
2524555 TGAATCGAATGTTGA-C
66 TGAATCAAATGATGATC
* * *
2524571 TTATTACATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCAACTTTGATTGAA
1 -TATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCTACCTTGATTGAA
*
2524636 CTGAATCAAATGATGAAT-
65 TTGAATCAAATGATG-ATC
* * * *** * *
2524654 TATTGCATGCTACCATGATCGAATCAAGTTGAATGATAATCTATCGCATGCTACCATGATCGAA-
1 TATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCTACCTTGATTGAAT
* * * *
2524718 TCAAGCTGAATGTTGATC
66 TGAATC-AAATGATGATC
2524736 TATTGCATGCT
1 TATTGCATGCT
2524747 GCCAAAGTCG
Statistics
Matches: 216, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
81 7 0.03
82 208 0.96
83 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (82 bp):
TATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCTACCTTGATTGAAT
TGAATCAAATGATGATC
Found at i:2524731 original size:164 final size:163
Alignment explanation
Indices: 2524407--2524746 Score: 407
Period size: 164 Copynumber: 2.1 Consensus size: 163
2524397 GATAAATTGG
* * * * * * *
2524407 TTATTGCATGATACCATGATTGAATCCAATTGGATGATGAACTATTATATGATGCCTTGATTGAA
1 TTATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGATACCTTGATTGAA
* * *
2524472 TTGAATCAAATCATGATCTATTGCATGCTACCATGATCAAATCAAATTAAAGGATAAACTATTAT
66 CTGAATCAAATCATGATCTATTGCATGCTACCATGATCAAATCAAATTAAAGGATAAACTATCAC
* * * *
2524537 ATGCTACCTTGATTGAATTGAATCGAATGTTGA
131 ATGCTACCATGATCGAATTCAAGCGAATGTTGA
* *
2524570 CTTATTACATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGCA-ACTTTGATTG
1 -TTATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATG-ATACCTTGATTG
* * * * * *
2524634 AACTGAATCAAATGATGAAT-TATTGCATGCTACCATGATCGAATCAAGTTGAATGATAATCTAT
64 AACTGAATCAAATCATG-ATCTATTGCATGCTACCATGATCAAATCAAATTAAAGGATAAACTAT
*
2524698 CGCATGCTACCATGATCGAA-TCAAGCTGAATGTTGA
128 CACATGCTACCATGATCGAATTCAAGC-GAATGTTGA
2524734 TCTATTGCATGCT
1 T-TATTGCATGCT
2524747 GCCAAAGTCG
Statistics
Matches: 148, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
163 5 0.03
164 140 0.95
165 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (163 bp):
TTATTGCATGCTACCATGATCGAATCAAATTGAAGGATAAACTATTATATGATACCTTGATTGAA
CTGAATCAAATCATGATCTATTGCATGCTACCATGATCAAATCAAATTAAAGGATAAACTATCAC
ATGCTACCATGATCGAATTCAAGCGAATGTTGA
Found at i:2526054 original size:112 final size:113
Alignment explanation
Indices: 2525914--2526137 Score: 369
Period size: 112 Copynumber: 2.0 Consensus size: 113
2525904 TATTGTATTC
* * * *
2525914 GAATAAATTTTTTTTGGCTCTTCCATTTGTATTGTCTGCTGTGTATGTCTGATTCAACGTTTAAT
1 GAATAAATTTTTTTTGGCTATTCCATTTGTATTGTCCGCTGCGTATGTCTGATTCAACGTTCAAT
* *
2525979 GATCTTGTTCTTGCTTTCAGTCTCGGTAATGCTCTCAATCCTTGATTA
66 GATCTCGTTCTTGCTTTCAGTCTCGGTAATGCTCCCAATCCTTGATTA
* *
2526027 GAATAAA-TTTTTTTGGCTATTCTATTTGTATTGTCCGCTGCGTATGTCTGATTCAGCGTTCAAT
1 GAATAAATTTTTTTTGGCTATTCCATTTGTATTGTCCGCTGCGTATGTCTGATTCAACGTTCAAT
2526091 GATCTCGTTCTTGCTTTCAGTCTCGGTAATGCTCCCAATCCTTGATT
66 GATCTCGTTCTTGCTTTCAGTCTCGGTAATGCTCCCAATCCTTGATT
2526138 GGGATTGGGG
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
112 96 0.93
113 7 0.07
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.45
Consensus pattern (113 bp):
GAATAAATTTTTTTTGGCTATTCCATTTGTATTGTCCGCTGCGTATGTCTGATTCAACGTTCAAT
GATCTCGTTCTTGCTTTCAGTCTCGGTAATGCTCCCAATCCTTGATTA
Found at i:2530145 original size:30 final size:32
Alignment explanation
Indices: 2530111--2530177 Score: 120
Period size: 30 Copynumber: 2.2 Consensus size: 32
2530101 GTTTAAATGT
2530111 TGAATAATTCTAAATGATTTT-TTTT-TCTCA
1 TGAATAATTCTAAATGATTTTGTTTTATCTCA
2530141 TGAATAATTCTAAATGATTTTGTTTTATCTCA
1 TGAATAATTCTAAATGATTTTGTTTTATCTCA
2530173 TGAAT
1 TGAAT
2530178 GTTGAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 21 0.60
31 4 0.11
32 10 0.29
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (32 bp):
TGAATAATTCTAAATGATTTTGTTTTATCTCA
Found at i:2533673 original size:23 final size:23
Alignment explanation
Indices: 2533608--2533673 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
2533598 TTAGTGCAAA
* * *
2533608 GGGAATCGATACCC-CCTTGGAG
1 GGGAACCGATTCCCTCCTTGAAG
* ** *
2533630 GGGATCCGATTCCCTTTTTGAAT
1 GGGAACCGATTCCCTCCTTGAAG
2533653 GGGAACCGATTCCCTCCTTGA
1 GGGAACCGATTCCCTCCTTGA
2533674 GGGAATCGAT
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
22 11 0.33
23 22 0.67
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.27
Consensus pattern (23 bp):
GGGAACCGATTCCCTCCTTGAAG
Found at i:2533683 original size:21 final size:21
Alignment explanation
Indices: 2533607--2533683 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
2533597 TTTAGTGCAA
*
2533607 AGGGAATCGATACCC-CCTTGG
1 AGGGAATCGATTCCCTCCTT-G
* **
2533628 AGGGGATCCGATTCCCTTTTTG
1 AGGGAAT-CGATTCCCTCCTTG
*
2533650 AATGGGAACCGATTCCCTCCTTG
1 -A-GGGAATCGATTCCCTCCTTG
2533673 AGGGAATCGAT
1 AGGGAATCGAT
2533684 ACCTCCCACG
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
21 15 0.35
22 9 0.21
23 15 0.35
24 4 0.09
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (21 bp):
AGGGAATCGATTCCCTCCTTG
Done.