Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008209.1 Hibiscus syriacus cultivar Beakdansim tig00110831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6561538
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 30
Found at i:1738 original size:23 final size:23
Alignment explanation
Indices: 1712--1762 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
1702 CTCACTTGAT
1712 CACTCCACTCACACTCGTGTTTG
1 CACTCCACTCACACTCGTGTTTG
1735 CACTCCACTCACACTCGTGTTTG
1 CACTCCACTCACACTCGTGTTTG
1758 CACTC
1 CACTC
1763 AGGGATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.18, C:0.41, G:0.12, T:0.29
Consensus pattern (23 bp):
CACTCCACTCACACTCGTGTTTG
Found at i:1925 original size:17 final size:17
Alignment explanation
Indices: 1903--1938 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
1893 TTGCATCGGC
*
1903 TATAGAAATGGTTATGG
1 TATAGAAATGGATATGG
*
1920 TATAGATATGGATATGG
1 TATAGAAATGGATATGG
1937 TA
1 TA
1939 AAGGTATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (17 bp):
TATAGAAATGGATATGG
Found at i:2176 original size:30 final size:29
Alignment explanation
Indices: 2142--2201 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
2132 TTTGAGTGTA
2142 CTTTGGAACTTT-TTCTTCTCTTTTCTTTTG
1 CTTT-GAACTTTCTTCTTCTC-TTTCTTTTG
* *
2172 CTTTGAATTTTCTTCTTTTCTTTCTTTTG
1 CTTTGAACTTTCTTCTTCTCTTTCTTTTG
2201 C
1 C
2202 ACTCCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.07, C:0.20, G:0.08, T:0.65
Consensus pattern (29 bp):
CTTTGAACTTTCTTCTTCTCTTTCTTTTG
Found at i:2251 original size:21 final size:20
Alignment explanation
Indices: 2225--2268 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
2215 TATAAGAGTC
2225 TTTTCTTTTT-TTCATTTCCTT
1 TTTTCTTTTTCTTC-TTT-CTT
2246 TTTTCTTTTTCTTCTTTCTT
1 TTTTCTTTTTCTTCTTTCTT
2266 TTT
1 TTT
2269 GTTGCAGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 13 0.59
22 3 0.14
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCTTTTTCTTCTTTCTT
Found at i:4919 original size:13 final size:12
Alignment explanation
Indices: 4895--4938 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
4885 CAAGTGCTAT
4895 AACAAAAAGAAA
1 AACAAAAAGAAA
*
4907 AAGAAAGAAGAAA
1 AACAAA-AAGAAA
4920 AACAAAAGAGAAA
1 AACAAAA-AGAAA
4933 AA-AAAA
1 AACAAAA
4939 CACTCTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.82, C:0.05, G:0.14, T:0.00
Consensus pattern (12 bp):
AACAAAAAGAAA
Found at i:14145 original size:6 final size:6
Alignment explanation
Indices: 14134--14177 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
14124 TGTGTAGGAG
*
14134 TCTTTT TC-TTT TCTCTTT TATTTT TCTTCTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCT-TTT TCTTTT TCTT-TT TCTTTT TCTTTT T
14178 GTTACAACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 5 0.15
6 17 0.52
7 11 0.33
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:16262 original size:17 final size:16
Alignment explanation
Indices: 16161--16251 Score: 65
Period size: 17 Copynumber: 5.2 Consensus size: 16
16151 AACTAAGTAT
16161 TTCATTCATCAAACTAG
1 TTCATTCAT-AAACTAG
* * *
16178 TTCATTCAATATTACAAA
1 TTCATTC-ATA-AACTAG
* *
16196 TTCATTGAATAAAGTTAG
1 TTCATT-CATAAA-CTAG
*
16214 TTCATTAATTAAACTAG
1 TTCATTCA-TAAACTAG
16231 TTCATTCATCAAACTAG
1 TTCATTCAT-AAACTAG
16248 TTCA
1 TTCA
16252 GTTACTAAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
16 1 0.02
17 32 0.55
18 25 0.43
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (16 bp):
TTCATTCATAAACTAG
Found at i:27101 original size:46 final size:46
Alignment explanation
Indices: 27005--27109 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 46
26995 AGGATTAGAT
27005 TTATTATTTTATTAGGAATTAAGGATGAGTTAAAACATTTTTTTAGTTA
1 TTATTATTTTATTAGGAATT-A--ATGAGTTAAAACATTTTTTTAGTTA
* *
27054 TTATTATTTTATTAGGAATT-A-GAGTTAAGACA--TGTTTAGTTTA
1 TTATTATTTTATTAGGAATTAATGAGTTAAAACATTTTTTTAG-TTA
27097 TTATTATTTTATT
1 TTATTATTTTATT
27110 CATTAGTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
42 6 0.11
43 16 0.30
44 10 0.19
45 1 0.02
49 20 0.38
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.52
Consensus pattern (46 bp):
TTATTATTTTATTAGGAATTAATGAGTTAAAACATTTTTTTAGTTA
Found at i:42504 original size:12 final size:12
Alignment explanation
Indices: 42474--42506 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
42464 ACGAGAGGGT
*
42474 GAGATTAGAAGG
1 GAGATCAGAAGG
42486 G-GATCAGAAGG
1 GAGATCAGAAGG
42497 GAGATCAGAA
1 GAGATCAGAA
42507 AAAGCCAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.42, C:0.06, G:0.39, T:0.12
Consensus pattern (12 bp):
GAGATCAGAAGG
Found at i:45959 original size:20 final size:22
Alignment explanation
Indices: 45934--45988 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
45924 TCTTATCATT
45934 TCATTTCTTTCTTCCATT-T-A
1 TCATTTCTTTCTTCCATTGTAA
* *
45954 TTATTTCATAT-TTCCATTGTAA
1 TCATTTC-TTTCTTCCATTGTAA
45976 TCATTTCTTTCTT
1 TCATTTCTTTCTT
45989 TTTAATTGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
20 13 0.48
21 5 0.19
22 9 0.33
ACGTcount: A:0.18, C:0.20, G:0.02, T:0.60
Consensus pattern (22 bp):
TCATTTCTTTCTTCCATTGTAA
Found at i:46602 original size:2 final size:2
Alignment explanation
Indices: 46595--46696 Score: 67
Period size: 2 Copynumber: 55.0 Consensus size: 2
46585 AAATAATTAT
*
46595 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T- TA -A TA AA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
46633 TA AA TT TA AA T- TA AA T- TA TA TA TA TA TA TA TA TA -A TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
46672 TA TA TA TT TA -A TT TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
46697 CCCGGCCTGA
Statistics
Matches: 74, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
1 8 0.11
2 66 0.89
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:46653 original size:40 final size:40
Alignment explanation
Indices: 46606--46696 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 40
46596 ATATATATAT
46606 ATATATATATATATAATATTAATAAATTA-A-ATTTAAATTAA
1 ATATATATATATAT-ATA-TAAT-AATTATATATTTAAATTAA
* *
46647 ATTATATATATATATATATAATATTTATATATTTAATTTAA
1 A-TATATATATATATATATAATAATTATATATTTAAATTAA
46688 ATATATATA
1 ATATATATA
46697 CCCGGCCTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
39 4 0.09
40 13 0.29
41 15 0.33
42 13 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (40 bp):
ATATATATATATATATATAATAATTATATATTTAAATTAA
Found at i:46846 original size:25 final size:25
Alignment explanation
Indices: 46808--46857 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
46798 ATCCCCGTGA
*
46808 TTTTTTAAGAGGGGACGGGTACGGG
1 TTTTTTAAGAGGGGACGGGGACGGG
46833 TTTTTTAA-ACGGGGACGGGGACGGG
1 TTTTTTAAGA-GGGGACGGGGACGGG
46858 GGCCAATACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.20, C:0.10, G:0.44, T:0.26
Consensus pattern (25 bp):
TTTTTTAAGAGGGGACGGGGACGGG
Found at i:61340 original size:18 final size:18
Alignment explanation
Indices: 61313--61347 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61303 CCGTTGTACA
61313 GGGGGAATCGGTACCCTT
1 GGGGGAATCGGTACCCTT
* *
61331 GGGGGGATCGGTTCCCT
1 GGGGGAATCGGTACCCT
61348 CCGAGCATAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.23, G:0.43, T:0.23
Consensus pattern (18 bp):
GGGGGAATCGGTACCCTT
Found at i:61476 original size:74 final size:75
Alignment explanation
Indices: 61313--61513 Score: 248
Period size: 74 Copynumber: 2.7 Consensus size: 75
61303 CCGTTGTACA
* * * *
61313 GGGGGAATCGG-TAC-CCT-TGGGGGGATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAACAA
1 GGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGAACAA
** *
61375 AACTTTTTAG
66 AACCATTCAG
* *
61385 GGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTC-GAGCCA
1 GGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGAACAA
61449 AACCATTCAG
66 AACCATTCAG
** *
61459 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTATGAGCAATCTGGAA
1 GGGGGAATCGGTTCCTCCTAT--GGGGGAATCGGTTCCCTCCGAGCATTCTGGAA
61514 TTTTGGCTTT
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
72 11 0.10
73 2 0.02
74 35 0.31
75 35 0.31
76 29 0.26
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.24
Consensus pattern (75 bp):
GGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGAACAA
AACCATTCAG
Found at i:64145 original size:20 final size:20
Alignment explanation
Indices: 64116--64153 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64106 CAGAACCCCA
*
64116 GGGGGTATCGATTCCCCTGT
1 GGGGGAATCGATTCCCCTGT
*
64136 GGGGGAATCGGTTCCCCT
1 GGGGGAATCGATTCCCCT
64154 TCAAAGGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCCTGT
Found at i:64188 original size:20 final size:21
Alignment explanation
Indices: 64136--64196 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
64126 ATTCCCCTGT
64136 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
64159 GGGGGAATCGGTTCCCTC-AG
1 GGGGGAATCGGTTCCCTCAAA
* *
64179 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
64197 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.36, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:68022 original size:22 final size:21
Alignment explanation
Indices: 67980--68019 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67970 GAGTTTGTTT
*
67980 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
68001 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
68020 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:70059 original size:74 final size:75
Alignment explanation
Indices: 69939--70143 Score: 256
Period size: 74 Copynumber: 2.8 Consensus size: 75
69929 CCGTTGTACA
* * ** *
69939 AGGGGGGAATCGGTACCCCCT-TGGGGGGGTCGGTTCCCTCCGAGCATACTGGAATTCTCGGAAC
1 AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCTGAGCATACTGGAATTCTCGGAAC
**
70003 AAAACTGTT-
66 AAAACCATTC
* * *
70012 AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCTGAGCATTCTGGAAATCTCGGAGC
1 AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCTGAGCATACTGGAATTCTCGGAAC
*
70077 CAAACCATTC
66 AAAACCATTC
*
70087 A-GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTATGAGCA-ATCTGGAATT
1 AGGGGGGAATCGGTTCCTCCTAT-GGGGGAATCGGTTCCCTCTGAGCATA-CTGGAATT
70144 TTTGGCTTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
73 19 0.17
74 64 0.56
75 31 0.27
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (75 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCTGAGCATACTGGAATTCTCGGAAC
AAAACCATTC
Found at i:74111 original size:21 final size:20
Alignment explanation
Indices: 74083--74121 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
74073 CATTCAAGGA
*
74083 ATTTATGGCCTCGACAAAAG
1 ATTTATGGCCTCAACAAAAG
*
74103 ATTTCATGGCTTCAACAAA
1 ATTT-ATGGCCTCAACAAA
74122 GACCCTGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (20 bp):
ATTTATGGCCTCAACAAAAG
Found at i:80856 original size:18 final size:18
Alignment explanation
Indices: 80833--80870 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
80823 TAATAACCAT
80833 AATAAAT-AAATAAAATAA
1 AATAAATGAAA-AAAATAA
80851 AATAAATGAAAAAAATAA
1 AATAAATGAAAAAAATAA
80869 AA
1 AA
80871 ATAGGTTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
AATAAATGAAAAAAATAA
Found at i:87344 original size:21 final size:21
Alignment explanation
Indices: 87320--87380 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
87310 AACTTTGAAA
87320 AAATGATTTTCAAAGTTTGGT
1 AAATGATTTTCAAAGTTTGGT
*
87341 AAATG--TTTC----TTT-GA
1 AAATGATTTTCAAAGTTTGGT
87355 AAATGATTTTCAAAGTTTGGT
1 AAATGATTTTCAAAGTTTGGT
87376 AAATG
1 AAATG
87381 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 4 0.13
19 4 0.13
20 3 0.10
21 11 0.35
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (21 bp):
AAATGATTTTCAAAGTTTGGT
Found at i:87426 original size:36 final size:36
Alignment explanation
Indices: 87312--87433 Score: 176
Period size: 35 Copynumber: 3.4 Consensus size: 36
87302 TGACAACCAA
87312 CTTTGAAAAAATGATTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGATTTTCAAAGTTTGGTAAATGTTT
87349 CTTTG-AAAATGATTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
* * *
87384 CTTTGAAAAATAGTTTTTCAAAATTTGGTAGATGTTT
1 CTTTGAAAAAT-GATTTTCAAAGTTTGGTAAATGTTT
*
87421 -GTTGAAAAATGAT
1 CTTTGAAAAATGAT
87434 AATAAGATAA
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
35 37 0.47
36 14 0.18
37 27 0.35
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
Found at i:88382 original size:15 final size:15
Alignment explanation
Indices: 88358--88389 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
88348 TGGAAGATCG
*
88358 AAATCCAGAACGGGA
1 AAATCAAGAACGGGA
88373 AAATCAAGAACGGGA
1 AAATCAAGAACGGGA
88388 AA
1 AA
88390 GAAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.16, G:0.25, T:0.06
Consensus pattern (15 bp):
AAATCAAGAACGGGA
Found at i:91714 original size:37 final size:38
Alignment explanation
Indices: 91659--91742 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 38
91649 TGGCAACCAA
91659 CTTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATATGGTTTTCAAAGTTTGGTAAATGTTT
* *
91696 CTTTGAAAAATA-GTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATATGGTTTTCAAAGTTTGGTAAATGTTT
*
91733 -GTTGAAAAAT
1 CTTTGAAAAAT
91743 GATAATGGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 9 0.21
37 33 0.77
38 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (38 bp):
CTTTGAAAAATATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:95412 original size:31 final size:31
Alignment explanation
Indices: 95349--95413 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
95339 ATATATAGCT
* *
95349 ACTTTCTTTTTTATTTAACTAAGATATGATC
1 ACTTTCATTTTTATTTAACTAAGAAATGATC
* * *
95380 ACTTTCATTTTTATTTAATTAATAAATTATC
1 ACTTTCATTTTTATTTAACTAAGAAATGATC
95411 ACT
1 ACT
95414 ACGGGTTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.52
Consensus pattern (31 bp):
ACTTTCATTTTTATTTAACTAAGAAATGATC
Found at i:95599 original size:19 final size:19
Alignment explanation
Indices: 95575--95614 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
95565 TTTCGATAAT
* *
95575 AATAAAATATATATTTTTA
1 AATAAAAAAAATATTTTTA
95594 AATAAAAAAAATATTTTTA
1 AATAAAAAAAATATTTTTA
95613 AA
1 AA
95615 ATTAAGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATAAAAAAAATATTTTTA
Found at i:95619 original size:25 final size:27
Alignment explanation
Indices: 95591--95656 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 27
95581 ATATATATTT
*
95591 TTAAATAAAAAAAATATTTTTAAAATTAAG
1 TTAAATAAAAAAAATATATTT--AA-TAAG
*
95621 TT-AAT-AATAAAATATATTTAATAAG
1 TTAAATAAAAAAAATATATTTAATAAG
95646 TT-AATAAAAAA
1 TTAAATAAAAAA
95657 TTTAAGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 9 0.28
26 6 0.19
28 12 0.38
29 3 0.09
30 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (27 bp):
TTAAATAAAAAAAATATATTTAATAAG
Found at i:95632 original size:28 final size:24
Alignment explanation
Indices: 95599--95657 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
95589 TTTTAAATAA
*
95599 AAAAAATATTTTTAAAATTAAGTTAAT
1 AAAAAATATATTT--AA-TAAGTTAAT
95626 AATAAAATATATTTAATAAGTTAAT
1 AA-AAAATATATTTAATAAGTTAAT
95651 AAAAAAT
1 AAAAAAT
95658 TTAAGTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.17
25 11 0.37
26 2 0.07
27 2 0.07
28 10 0.33
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
AAAAAATATATTTAATAAGTTAAT
Found at i:95655 original size:51 final size:52
Alignment explanation
Indices: 95538--95644 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 52
95528 AATAAATTAA
* * * **
95538 AATAAATTAAATATATATTTTTAAAACTTTCGATAATAATAAAATATATATT
1 AATAAATAAAAAAAATATTTTTAAAACTTAAGATAATAATAAAATATATATT
** *
95590 TTTAAATAAAAAAAATATTTTTAAAA-TTAAGTTAATAATAAAATATAT-TT
1 AATAAATAAAAAAAATATTTTTAAAACTTAAGATAATAATAAAATATATATT
95640 AATAA
1 AATAA
95645 GTTAATAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
50 5 0.11
51 19 0.42
52 21 0.47
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (52 bp):
AATAAATAAAAAAAATATTTTTAAAACTTAAGATAATAATAAAATATATATT
Found at i:95666 original size:25 final size:25
Alignment explanation
Indices: 95617--95668 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
95607 TTTTTAAAAT
*
95617 TAAGTTAATAATAAAATATATTTAA
1 TAAGTTAATAATAAAATATAGTTAA
*
95642 TAAGTTAATAA-AAAATTTAAGTTAA
1 TAAGTTAATAATAAAATAT-AGTTAA
95667 TA
1 TA
95669 TATATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
TAAGTTAATAATAAAATATAGTTAA
Found at i:106749 original size:60 final size:59
Alignment explanation
Indices: 106643--106754 Score: 161
Period size: 60 Copynumber: 1.9 Consensus size: 59
106633 GAGGGTTAGT
* *
106643 TAGAGCCATATTATCGAGTTTGCTTTTTCATTACAACTAGGTGGGTTCGATATAACACC
1 TAGAGCCATATTATCGAGTTTGCCTTTTCATTACAACTAGGAGGGTTCGATATAACACC
* * * *
106702 TAGAGCCATATTATCGATTTTTTCCTTTTCATTGCGACTAGGAGGGTTCGATA
1 TAGAGCCATATTATCGA-GTTTGCCTTTTCATTACAACTAGGAGGGTTCGATA
106755 GGCCACTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
59 17 0.37
60 29 0.63
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (59 bp):
TAGAGCCATATTATCGAGTTTGCCTTTTCATTACAACTAGGAGGGTTCGATATAACACC
Found at i:116604 original size:59 final size:59
Alignment explanation
Indices: 116502--116619 Score: 155
Period size: 59 Copynumber: 2.0 Consensus size: 59
116492 GGTTGGTTAG
* * * * *
116502 AGCCATATTATTGAGTTTTCATTTTCATTGCGACTTGATGGGTTTGATAGGACACTTAT
1 AGCCATATTATCGAGTTTGCATTTTCATTGCGACTAGAAGGGTTCGATAGGACACTTAT
* * * *
116561 AGCCATATTATCGAGTTTGCCTTTTTATTGTGAGTAGAAGGGTTCGATAGGACACTTAT
1 AGCCATATTATCGAGTTTGCATTTTCATTGCGACTAGAAGGGTTCGATAGGACACTTAT
116620 CCATATATTT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.40
Consensus pattern (59 bp):
AGCCATATTATCGAGTTTGCATTTTCATTGCGACTAGAAGGGTTCGATAGGACACTTAT
Found at i:121977 original size:104 final size:104
Alignment explanation
Indices: 121694--121978 Score: 374
Period size: 104 Copynumber: 2.8 Consensus size: 104
121684 CCATGCATAA
* * * * * *
121694 ACACATAGTTCCCAAATTACATAAAGGTATTGATACGAAAATGTAACAAATGCA-TAAACAAAAT
1 ACACATAGTACCAAAAGTACAAAAAGGTACTGATACGAAAATGCAACAAATGCATTAAACAAAAT
*
121758 CGATCAATAACAAGTGCACATTATGAACACCATCAATGC
66 CGATCAATAACCAGTGCACATTATGAACACCATCAATGC
* *** * * *
121797 ACACAAAGTATTGAAAGTACACAAAGGTACTGATACGTAAATGCAACAAATGCATTAAAAAAAAT
1 ACACATAGTACCAAAAGTACAAAAAGGTACTGATACGAAAATGCAACAAATGCATTAAACAAAAT
* ** * *
121862 CTATTGATAACCAGTGCTCATTATGAACACTATCAATGC
66 CGATCAATAACCAGTGCACATTATGAACACCATCAATGC
* *
121901 ACACATAGTGCCAAAAGTACAAAAAGGTACTGATACAAAAATGCAACAAATGCATTAAACAAAAT
1 ACACATAGTACCAAAAGTACAAAAAGGTACTGATACGAAAATGCAACAAATGCATTAAACAAAAT
121966 CGATCAATAACCA
66 CGATCAATAACCA
121979 TCATTCAACA
Statistics
Matches: 152, Mismatches: 29, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
103 44 0.29
104 108 0.71
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (104 bp):
ACACATAGTACCAAAAGTACAAAAAGGTACTGATACGAAAATGCAACAAATGCATTAAACAAAAT
CGATCAATAACCAGTGCACATTATGAACACCATCAATGC
Found at i:128859 original size:24 final size:24
Alignment explanation
Indices: 128832--128888 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
128822 ACATAGTGCT
*
128832 GAAAGTACACAAAGGTACTGATAC
1 GAAAATACACAAAGGTACTGATAC
* *
128856 GAAAATACACAAAGGTATTGATAT
1 GAAAATACACAAAGGTACTGATAC
128880 GAAAATACA
1 GAAAATACA
128889 AAAATTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (24 bp):
GAAAATACACAAAGGTACTGATAC
Found at i:129008 original size:104 final size:104
Alignment explanation
Indices: 128857--129127 Score: 388
Period size: 104 Copynumber: 2.6 Consensus size: 104
128847 TACTGATACG
* * *
128857 AAAA-TACACAAAGGTATTGATATGAAAATACAA-AAATTGTATTAAACAAAATCGATCGATAAC
1 AAAAGTACACAAAGGTACTGATACGAAAATACAACAAA-TGCATTAAACAAAATCGATCGATAAC
* * **
128920 AAGTTCTCATTATGAATAC-CATCAATGCACACATAGTGTT
65 AAGTGCTCATTATGAACACTC-TCAATGCACACATAGTGCC
*
128960 AAAAGTACACAAAGGTACTGATGA-GAAAATGCAACAAATGCATTAAACAAAATCGATCGATAAC
1 AAAAGTACACAAAGGTACTGAT-ACGAAAATACAACAAATGCATTAAACAAAATCGATCGATAAC
129024 AAGTGCTCATTATGAACACTCTCAATGCACACATAGTGCC
65 AAGTGCTCATTATGAACACTCTCAATGCACACATAGTGCC
* * *
129064 GAAAGTACACAAAGGTACTGATACGAAAATACAACAGATGCATTAAACAAAATCAATCGATAAC
1 AAAAGTACACAAAGGTACTGATACGAAAATACAACAAATGCATTAAACAAAATCGATCGATAAC
129128 CATCATCCTC
Statistics
Matches: 152, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
103 5 0.03
104 142 0.93
105 5 0.03
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (104 bp):
AAAAGTACACAAAGGTACTGATACGAAAATACAACAAATGCATTAAACAAAATCGATCGATAACA
AGTGCTCATTATGAACACTCTCAATGCACACATAGTGCC
Found at i:133903 original size:19 final size:20
Alignment explanation
Indices: 133879--133917 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
133869 ATACTAACAG
*
133879 TAGAAATAACA-GTAACATC
1 TAGAAACAACATGTAACATC
*
133898 TAGAAACAATATGTAACATC
1 TAGAAACAACATGTAACATC
133918 CTCAATACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.23
Consensus pattern (20 bp):
TAGAAACAACATGTAACATC
Found at i:152311 original size:21 final size:21
Alignment explanation
Indices: 152256--152318 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
152246 AGGGTTACAT
* *
152256 AGGTCATTCGGGACGTATGTAT-
1 AGGTCCTTCGGGACATA-G-ATG
*
152278 AGGTCCTTTGGGACATAGATG
1 AGGTCCTTCGGGACATAGATG
*
152299 AGGTTCTTCGGGACATAGAT
1 AGGTCCTTCGGGACATAGAT
152319 TTCACATGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 2 0.06
21 19 0.54
22 14 0.40
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (21 bp):
AGGTCCTTCGGGACATAGATG
Found at i:166777 original size:176 final size:177
Alignment explanation
Indices: 166482--166832 Score: 679
Period size: 176 Copynumber: 2.0 Consensus size: 177
166472 GAGGGTATTC
166482 ACATCGAGCACCTCCCGTAGTAACTAAGTCTTACGACAAAGAGGTTGAAATAGTACTCACAAGCA
1 ACATCGAGCACCTCCCGTAGTAACTAAGTCTTACGACAAAGAGGTTGAAATAGTACTCACAAGCA
166547 GGACAGTCCGCAAGAGAGGAGTTCTGCCGCGTACCGTGTATTTCAATCAGTGGAAAGGACTACCA
66 GGACAGTCCGCAAGAGAGGAGTTCTGCCGCGTACCGTGTATTTCAATCAGTGGAAAGGACTACCA
166612 GAGTCTGAGGCAACA-GGGAACTAGCTGAAGACTTGTGGCAGTTCGA
131 GAGTCTGAGGCAACATGGGAACTAGCTGAAGACTTGTGGCAGTTCGA
166658 ACATCGAGCACCTCCCGTAGTAACTAAGTCTTACGACAAAGAGGTTGAAATAGTACTCACAAGCA
1 ACATCGAGCACCTCCCGTAGTAACTAAGTCTTACGACAAAGAGGTTGAAATAGTACTCACAAGCA
166723 GGACAGTCCGCAAGAGAGGAGTTCTGCCGCGTACCGTGTATTT-AATCAAGTGGAAAGGACTACC
66 GGACAGTCCGCAAGAGAGGAGTTCTGCCGCGTACCGTGTATTTCAATC-AGTGGAAAGGACTACC
166787 AGAGTCTGAGGCAACATGGGAACTAGCTGAAGACTTGTGGCAGTTC
130 AGAGTCTGAGGCAACATGGGAACTAGCTGAAGACTTGTGGCAGTTC
166833 AAAGAACATC
Statistics
Matches: 173, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
175 4 0.02
176 140 0.81
177 29 0.17
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.20
Consensus pattern (177 bp):
ACATCGAGCACCTCCCGTAGTAACTAAGTCTTACGACAAAGAGGTTGAAATAGTACTCACAAGCA
GGACAGTCCGCAAGAGAGGAGTTCTGCCGCGTACCGTGTATTTCAATCAGTGGAAAGGACTACCA
GAGTCTGAGGCAACATGGGAACTAGCTGAAGACTTGTGGCAGTTCGA
Found at i:171957 original size:29 final size:29
Alignment explanation
Indices: 171906--171964 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
171896 GATGTATGAA
171906 GTATTATAGAAATCTTATAAAAATTAGGGG
1 GTATTATAGAAATCTTATAAAAATT-GGGG
* * *
171936 GTATT-TAGTAATTTTATGAAAATTGGGG
1 GTATTATAGAAATCTTATAAAAATTGGGG
171964 G
1 G
171965 ACCTATTCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 16 0.62
30 5 0.19
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (29 bp):
GTATTATAGAAATCTTATAAAAATTGGGG
Found at i:175202 original size:2 final size:2
Alignment explanation
Indices: 175195--175228 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
175185 ATAAGTAGGA
*
175195 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
175229 GGAAGAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:176425 original size:17 final size:17
Alignment explanation
Indices: 176405--176446 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
176395 GTTTAATGAT
*
176405 TGAACTAGTTTGATT-AA
1 TGAACTACTTT-ATTCAA
176422 TGAACTAACTTTATTCAA
1 TGAACT-ACTTTATTCAA
176440 TGAACTA
1 TGAACTA
176447 TATGCACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (17 bp):
TGAACTACTTTATTCAA
Found at i:181997 original size:144 final size:145
Alignment explanation
Indices: 181808--182097 Score: 573
Period size: 144 Copynumber: 2.0 Consensus size: 145
181798 AGAATTTCAC
181808 TCACTTTGAGATTATATTCATGTCAAAATATAAGCCTCACTAAGCTTTAAGCTTAATCATTTGCT
1 TCACTTTGAGATTATATTCATGTCAAAATATAAGCCTCACTAAGCTTTAAGCTTAATCATTTGCT
181873 TTTGATTCTCTTTGATCTAGAAATTTATCACAAATTCATATTCTGACAATTTGCATTACCTTT-A
66 TTTGATTCTCTTTGATCTAGAAATTTATCACAAATTCATATTCTGACAATTTGCATTACCTTTAA
181937 AGAAATAATATTATG
131 AGAAATAATATTATG
181952 TCACTTTGAGATTATATTCATGTCAAAATATAAGCCTCACTAAGCTTTAAGCTTAATCATTTGCT
1 TCACTTTGAGATTATATTCATGTCAAAATATAAGCCTCACTAAGCTTTAAGCTTAATCATTTGCT
182017 TTTGATTCTCTTTGATCTAGAAATTTATCACAAATTCATATTCTGACAATTTGCATTACCTTTAA
66 TTTGATTCTCTTTGATCTAGAAATTTATCACAAATTCATATTCTGACAATTTGCATTACCTTTAA
182082 AGAAATAATATTATG
131 AGAAATAATATTATG
182097 T
1 T
182098 ATTAAAATAA
Statistics
Matches: 145, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
144 128 0.88
145 17 0.12
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (145 bp):
TCACTTTGAGATTATATTCATGTCAAAATATAAGCCTCACTAAGCTTTAAGCTTAATCATTTGCT
TTTGATTCTCTTTGATCTAGAAATTTATCACAAATTCATATTCTGACAATTTGCATTACCTTTAA
AGAAATAATATTATG
Found at i:187828 original size:16 final size:16
Alignment explanation
Indices: 187807--187839 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
187797 GTGAGTTGCA
187807 TGGGTGAAAACTTACG
1 TGGGTGAAAACTTACG
*
187823 TGGGTGGAAACTTACG
1 TGGGTGAAAACTTACG
187839 T
1 T
187840 CATTAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (16 bp):
TGGGTGAAAACTTACG
Found at i:188069 original size:38 final size:38
Alignment explanation
Indices: 188018--188091 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
188008 AGTTCCTTGG
188018 CATAAGATCATTTGGTTTTCTTTACATATTATCAAAGA
1 CATAAGATCATTTGGTTTTCTTTACATATTATCAAAGA
*
188056 CATAATATCATTTGGTTTTCTTTACATATTATCAAA
1 CATAAGATCATTTGGTTTTCTTTACATATTATCAAA
188092 CAAGCTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.45
Consensus pattern (38 bp):
CATAAGATCATTTGGTTTTCTTTACATATTATCAAAGA
Found at i:194550 original size:30 final size:30
Alignment explanation
Indices: 194479--194538 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
194469 ACAATTTAAG
*
194479 GCAAAATGTTTTTGGACTTGAATTGAATTT
1 GCAAAATGTTTTTGGAATTGAATTGAATTT
194509 GCAAAATGTTTTTGGAATTGAATTGAATTT
1 GCAAAATGTTTTTGGAATTGAATTGAATTT
194539 ATTCAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (30 bp):
GCAAAATGTTTTTGGAATTGAATTGAATTT
Found at i:194762 original size:20 final size:21
Alignment explanation
Indices: 194721--194775 Score: 94
Period size: 20 Copynumber: 2.7 Consensus size: 21
194711 ATGCAATTAG
194721 TGCATCGATGCATCCTTGCCA
1 TGCATCGATGCATCCTTGCCA
194742 TGCATCGATGCATCC-TGCCA
1 TGCATCGATGCATCCTTGCCA
*
194762 TGCATCCATGCATC
1 TGCATCGATGCATC
194776 AAGGCTGCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (21 bp):
TGCATCGATGCATCCTTGCCA
Found at i:197362 original size:30 final size:30
Alignment explanation
Indices: 197327--197383 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
197317 AATTTAAGGC
*
197327 AAATGTTTTTGGACTTGAATTGAATTTGCA
1 AAATGTTTTTGGACTTGAATTAAATTTGCA
*
197357 AAATGTTTTTGGATTTGAATTAAATTT
1 AAATGTTTTTGGACTTGAATTAAATTT
197384 ATTCAAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.47
Consensus pattern (30 bp):
AAATGTTTTTGGACTTGAATTAAATTTGCA
Found at i:198333 original size:161 final size:167
Alignment explanation
Indices: 198068--198395 Score: 605
Period size: 161 Copynumber: 2.0 Consensus size: 167
198058 CAAATTAATG
198068 AATTTGTTGGAAAATCCTTGGTGAGGAGCTAAGGTAGTGGACGTAAACTTTGGTTGAGAAAGTCG
1 AATTTGTTGGAAAATCCTTGGTGAGGAGCTAAGGTAGTGGACGTAAACTTTGGTTGAGAAAGTCG
198133 AACCACTATAAATGGCTGTGCAATTCTCTATCTTTCAATCTC-TTAC-CCCT-AA-ACAAAACCG
66 AACCACTATAAATGGCTGTGCAATTCTCTATCTTTCAATCTCTTTACTCCCTAAACACAAAACCG
198194 TTCCGA-CCC-CGTTGCAAACAGTTTCGGTTGTCGAT
131 TTCCGACCCCTCGTTGCAAACAGTTTCGGTTGTCGAT
198229 AATTTGTTGGAAAATCCTTGGTGAGGAGCTAAGGTAGTGGACGTAAACTTTGGTTGAGAAAGTCG
1 AATTTGTTGGAAAATCCTTGGTGAGGAGCTAAGGTAGTGGACGTAAACTTTGGTTGAGAAAGTCG
198294 AACCACTATAAATGGCTGTGCAATTCTCTATCTTTCAATCTCTTTACTCCCTAAACACAAAACCG
66 AACCACTATAAATGGCTGTGCAATTCTCTATCTTTCAATCTCTTTACTCCCTAAACACAAAACCG
*
198359 TTCCGACCCCTCTTTGCAAACAGTTTCGGTTGTCGAT
131 TTCCGACCCCTCGTTGCAAACAGTTTCGGTTGTCGAT
198396 TCGAGCATCC
Statistics
Matches: 160, Mismatches: 1, Indels: 6
0.96 0.01 0.04
Matches are distributed among these distances:
161 107 0.67
162 4 0.03
163 4 0.03
164 2 0.01
165 15 0.09
166 3 0.02
167 25 0.16
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (167 bp):
AATTTGTTGGAAAATCCTTGGTGAGGAGCTAAGGTAGTGGACGTAAACTTTGGTTGAGAAAGTCG
AACCACTATAAATGGCTGTGCAATTCTCTATCTTTCAATCTCTTTACTCCCTAAACACAAAACCG
TTCCGACCCCTCGTTGCAAACAGTTTCGGTTGTCGAT
Found at i:202448 original size:13 final size:13
Alignment explanation
Indices: 202430--202456 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
202420 TATCACAGAG
202430 CACTTATGCTAAT
1 CACTTATGCTAAT
202443 CACTTATGCTAAT
1 CACTTATGCTAAT
202456 C
1 C
202457 TTTGTATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (13 bp):
CACTTATGCTAAT
Found at i:214259 original size:21 final size:21
Alignment explanation
Indices: 214235--214274 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
214225 TGAATTCAAT
214235 TTAGCTCATAAGTCTTATACA
1 TTAGCTCATAAGTCTTATACA
* *
214256 TTAGCTCATATGTGTTATA
1 TTAGCTCATAAGTCTTATA
214275 TCATCTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (21 bp):
TTAGCTCATAAGTCTTATACA
Found at i:221869 original size:20 final size:19
Alignment explanation
Indices: 221846--221902 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 19
221836 ATAATAGGTA
*
221846 TATTATA-TAGTATATATTAT
1 TATTATATTAATAT-TATT-T
221866 TATTACTATTAATATTATTT
1 TATTA-TATTAATATTATTT
221886 TATTAT-TT-AT-TTATTT
1 TATTATATTAATATTATTT
221902 T
1 T
221903 TAGGTCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 7 0.21
17 2 0.06
18 2 0.06
19 1 0.03
20 11 0.32
21 6 0.18
22 5 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TATTATATTAATATTATTT
Found at i:222297 original size:19 final size:20
Alignment explanation
Indices: 222256--222306 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
222246 GAAACCCCTT
*
222256 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
222276 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
222295 TGAAGATACATG
1 TGAAAATACATG
222307 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:223255 original size:30 final size:31
Alignment explanation
Indices: 223215--223274 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
223205 ACATGCTGCC
**
223215 ATGATATCTAAATGAAATGCAAACATAATAA
1 ATGATATCTAAAACAAATGCAAACATAATAA
* *
223246 ATGA-ATCTAAAACAATTGTAAACATAATA
1 ATGATATCTAAAACAAATGCAAACATAATA
223275 TAAAGGTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (31 bp):
ATGATATCTAAAACAAATGCAAACATAATAA
Found at i:224926 original size:16 final size:16
Alignment explanation
Indices: 224905--224938 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
224895 ATGAAAGAAG
224905 AAAGGAAA-TGATAAGA
1 AAAGGAAATTGAT-AGA
224921 AAAGGAAATTGATAGA
1 AAAGGAAATTGATAGA
224937 AA
1 AA
224939 TGTTATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.15
Consensus pattern (16 bp):
AAAGGAAATTGATAGA
Found at i:228688 original size:20 final size:20
Alignment explanation
Indices: 228651--228704 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
228641 AGAGCATGTA
*
228651 TTTTCATT-AAAGTCTTGTT
1 TTTTCATTAAAAATCTTGTT
228670 TTTTCATTAAAAATCTTGTT
1 TTTTCATTAAAAATCTTGTT
228690 TTTTCATTAAAAATC
1 TTTTCATTAAAAATC
228705 ATGTAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 8 0.24
20 25 0.76
ACGTcount: A:0.30, C:0.11, G:0.06, T:0.54
Consensus pattern (20 bp):
TTTTCATTAAAAATCTTGTT
Found at i:240943 original size:19 final size:20
Alignment explanation
Indices: 240919--240967 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
240909 TATCCTTTAG
240919 TTATTTTATTTCATT-CTTA
1 TTATTTTATTTCATTACTTA
240938 TTA-TTTATTTTCATTACTTA
1 TTATTTTA-TTTCATTACTTA
240958 -TATTATTATT
1 TTATT-TTATT
240968 CCCTTATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 7 0.27
21 3 0.12
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTTATTTCATTACTTA
Found at i:241240 original size:21 final size:21
Alignment explanation
Indices: 241216--241270 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
241206 TGGAGTGCAA
241216 AAAAGAAAGAAAGACA-AAAAG
1 AAAAGAAAGAAAGA-ATAAAAG
241237 AAAA-AAA-AATCAGAATAAAAG
1 AAAAGAAAGAA--AGAATAAAAG
241258 AAAAGAAAAGAAA
1 AAAAG-AAAGAAA
241271 AAAGAAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 11
0.72 0.00 0.28
Matches are distributed among these distances:
19 2 0.07
20 4 0.14
21 16 0.57
22 1 0.04
23 3 0.11
24 2 0.07
ACGTcount: A:0.78, C:0.04, G:0.15, T:0.04
Consensus pattern (21 bp):
AAAAGAAAGAAAGAATAAAAG
Found at i:241273 original size:17 final size:17
Alignment explanation
Indices: 241214--241276 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 17
241204 ATTGGAGTGC
241214 AAAAAAG-AAAG-AAAG
1 AAAAAAGAAAAGAAAAG
*
241229 ACAAAAAGAAAAAAAAATCAG
1 A-AAAAAG-AAAAGAAA--AG
241250 AATAAAAGAAAAGAAAAG
1 AA-AAAAGAAAAGAAAAG
241268 AAAAAAGAA
1 AAAAAAGAA
241277 GAATTTCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
15 1 0.03
16 6 0.15
17 7 0.18
18 7 0.18
19 2 0.05
20 8 0.21
21 8 0.21
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAAAGAAAAGAAAAG
Found at i:247211 original size:24 final size:24
Alignment explanation
Indices: 247141--247198 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
247131 ACAGTTATGC
247141 CACTTGAAGTTCAAAAAGATGTGT
1 CACTTGAAGTTCAAAAAGATGTGT
247165 CACTTGAAGTTCAAAAAGATGTGT
1 CACTTGAAGTTCAAAAAGATGTGT
247189 CACTTGAAGT
1 CACTTGAAGT
247199 GCCACAAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (24 bp):
CACTTGAAGTTCAAAAAGATGTGT
Found at i:258884 original size:23 final size:24
Alignment explanation
Indices: 258842--258894 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
258832 TTTCTTTCTT
258842 TTTCTTCTTTTCGAGTGCTTTCAA
1 TTTCTTCTTTTCGAGTGCTTTCAA
* *
258866 TTTCTTCTTTT-GAGTGCTTTTAT
1 TTTCTTCTTTTCGAGTGCTTTCAA
258889 TTTCTT
1 TTTCTT
258895 TGCTGATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.09, C:0.17, G:0.11, T:0.62
Consensus pattern (24 bp):
TTTCTTCTTTTCGAGTGCTTTCAA
Found at i:261229 original size:28 final size:28
Alignment explanation
Indices: 261192--261261 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
261182 AAAGAAAATC
261192 AGAAAAAAATTAAAGCACTCCAAAAG-AA
1 AGAAAAAAATTAAAGCACT-CAAAAGAAA
* * *
261220 AGAAAGAAATTACAGCACTTAAAAGAAA
1 AGAAAAAAATTAAAGCACTCAAAAGAAA
*
261248 AGAAAAAAAATAAA
1 AGAAAAAAATTAAA
261262 ATAAAAGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 5 0.14
28 30 0.86
ACGTcount: A:0.67, C:0.10, G:0.11, T:0.11
Consensus pattern (28 bp):
AGAAAAAAATTAAAGCACTCAAAAGAAA
Found at i:269449 original size:21 final size:19
Alignment explanation
Indices: 269399--269436 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
269389 CGGCCAAGAG
*
269399 CATGTATTTTCATTAAAGT
1 CATGTATTTTCATTAAAAT
269418 CATGTATTTTCATTAAAAT
1 CATGTATTTTCATTAAAAT
269437 ATCATGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:270625 original size:14 final size:15
Alignment explanation
Indices: 270598--270628 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
270588 ATTCATTTTG
270598 TTTATAATCTTTCAT
1 TTTATAATCTTTCAT
270613 TTTATAA-CTTTCAT
1 TTTATAATCTTTCAT
270627 TT
1 TT
270629 AATTTGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTATAATCTTTCAT
Found at i:281916 original size:19 final size:19
Alignment explanation
Indices: 281894--281933 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
281884 TTCTCTTTAC
*
281894 TTCATTACCTTTTC-TTTCA
1 TTCATT-CCTATTCATTTCA
281913 TTCATTCCTATTCATTTCA
1 TTCATTCCTATTCATTTCA
281932 TT
1 TT
281934 ATCTCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.57
Consensus pattern (19 bp):
TTCATTCCTATTCATTTCA
Found at i:291354 original size:19 final size:20
Alignment explanation
Indices: 291330--291382 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
291320 TTCGGCCAAG
* *
291330 ATCATGTATCTTCAT-TAAA
1 ATCATGTATTTTCATCAAAA
291349 ATCATGTATTTTCATCAAAA
1 ATCATGTATTTTCATCAAAA
291369 ATCATGTATTTTCA
1 ATCATGTATTTTCA
291383 AAGGGGTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.43
Consensus pattern (20 bp):
ATCATGTATTTTCATCAAAA
Found at i:294741 original size:24 final size:25
Alignment explanation
Indices: 294694--294743 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
294684 ACCAATGCTA
294694 TAGAGCAAAGACCCAATCTTTGTAT
1 TAGAGCAAAGACCCAATCTTTGTAT
294719 TAGAGCAAAGACCC-ATCTTTGTAT
1 TAGAGCAAAGACCCAATCTTTGTAT
294743 T
1 T
294744 GTTTCTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (25 bp):
TAGAGCAAAGACCCAATCTTTGTAT
Found at i:296666 original size:15 final size:16
Alignment explanation
Indices: 296627--296668 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
296617 TGAGTTGTAG
*
296627 TTATCTCATTTTCTCT
1 TTATTTCATTTTCTCT
*
296643 TTATTTCATTTTGT-T
1 TTATTTCATTTTCTCT
*
296658 TTCTTTCATTT
1 TTATTTCATTT
296669 GTTCTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (16 bp):
TTATTTCATTTTCTCT
Found at i:298796 original size:23 final size:21
Alignment explanation
Indices: 298763--298805 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
298753 TCCACAAGAC
*
298763 ATGTCCTTTGACATTCAAAGG
1 ATGTCCTTTGAAATTCAAAGG
298784 ATGTACCTCTTGAAATTCAAAG
1 ATGT-CCT-TTGAAATTCAAAG
298806 AATATGCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:304744 original size:21 final size:21
Alignment explanation
Indices: 304705--304744 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
304695 ATGCATTCAT
* * *
304705 ATTAGCTCATAGACTTTATAC
1 ATTAGCTCACACACATTATAC
304726 ATTAGCTCACACACATTAT
1 ATTAGCTCACACACATTAT
304745 GAGATGATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (21 bp):
ATTAGCTCACACACATTATAC
Found at i:310901 original size:11 final size:11
Alignment explanation
Indices: 310885--310923 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
310875 TTTTTTTCAA
**
310885 AAAAAAAAGGT
1 AAAAAAAAGCC
310896 AAAAAAAAGCC
1 AAAAAAAAGCC
310907 AAAAAAAAGCC
1 AAAAAAAAGCC
310918 AAAAAA
1 AAAAAA
310924 GCCAAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.77, C:0.10, G:0.10, T:0.03
Consensus pattern (11 bp):
AAAAAAAAGCC
Found at i:319001 original size:19 final size:19
Alignment explanation
Indices: 318955--319002 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
318945 GACATATTTA
318955 ATTTGTTATTATTTTATTC
1 ATTTGTTATTATTTTATTC
318974 ATATT-TTATTATTTTATTC
1 AT-TTGTTATTATTTTATTC
318993 ATTTGTTATT
1 ATTTGTTATT
319003 TAGGACCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 2 0.07
19 23 0.85
20 2 0.07
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (19 bp):
ATTTGTTATTATTTTATTC
Found at i:331702 original size:34 final size:34
Alignment explanation
Indices: 331658--331776 Score: 91
Period size: 34 Copynumber: 3.3 Consensus size: 34
331648 TTAAATTAAT
331658 TTTATATAATGTAATAAATCATGTTCAATATAAA
1 TTTATATAATGTAATAAATCATGTTCAATATAAA
* * *
331692 TTTATTTAATG-ATTGACAAGTGTCAAAAT-TGTCAA-ATAAT
1 TTTATATAATGTAAT-A-AA---TC---ATGT-TCAATATAAA
331732 TTTATATAATGTAATAAATCATGTTCAATATAAA
1 TTTATATAATGTAATAAATCATGTTCAATATAAA
* *
331766 ATTATTTAATG
1 TTTATATAATG
331777 ATTGACAAGT
Statistics
Matches: 65, Mismatches: 8, Indels: 24
0.67 0.08 0.25
Matches are distributed among these distances:
33 8 0.12
34 25 0.38
35 2 0.03
36 2 0.03
38 2 0.03
39 2 0.03
40 16 0.25
41 8 0.12
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (34 bp):
TTTATATAATGTAATAAATCATGTTCAATATAAA
Found at i:331736 original size:40 final size:41
Alignment explanation
Indices: 331682--331806 Score: 119
Period size: 40 Copynumber: 3.3 Consensus size: 41
331672 TAAATCATGT
331682 TCAATATAAATTTATTTAATGATTGACAAGTGTCAAAATTG
1 TCAATATAAATTTATTTAATGATTGACAAGTGTCAAAATTG
* * *
331723 TCAA-ATAATTTTATATAATGTAAT-A-AA---TC---A-TG
1 TCAATATAAATTTATTTAATG-ATTGACAAGTGTCAAAATTG
*
331755 TTCAATATAAAATTATTTAATGATTGACAAGTGTCAAAATTG
1 -TCAATATAAATTTATTTAATGATTGACAAGTGTCAAAATTG
331797 TCAA-ATAAAT
1 TCAATATAAAT
331807 ACACATTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 25
0.66 0.08 0.26
Matches are distributed among these distances:
32 2 0.03
33 7 0.11
34 14 0.22
35 2 0.03
36 2 0.03
38 2 0.03
39 2 0.03
40 20 0.31
41 11 0.17
42 2 0.03
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (41 bp):
TCAATATAAATTTATTTAATGATTGACAAGTGTCAAAATTG
Found at i:331775 original size:74 final size:74
Alignment explanation
Indices: 331654--331804 Score: 293
Period size: 74 Copynumber: 2.0 Consensus size: 74
331644 ATATTTAAAT
*
331654 TAATTTTATATAATGTAATAAATCATGTTCAATATAAATTTATTTAATGATTGACAAGTGTCAAA
1 TAATTTTATATAATGTAATAAATCATGTTCAATATAAAATTATTTAATGATTGACAAGTGTCAAA
331719 ATTGTCAAA
66 ATTGTCAAA
331728 TAATTTTATATAATGTAATAAATCATGTTCAATATAAAATTATTTAATGATTGACAAGTGTCAAA
1 TAATTTTATATAATGTAATAAATCATGTTCAATATAAAATTATTTAATGATTGACAAGTGTCAAA
331793 ATTGTCAAA
66 ATTGTCAAA
331802 TAA
1 TAA
331805 ATACACATTT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (74 bp):
TAATTTTATATAATGTAATAAATCATGTTCAATATAAAATTATTTAATGATTGACAAGTGTCAAA
ATTGTCAAA
Found at i:332019 original size:17 final size:17
Alignment explanation
Indices: 331977--332019 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
331967 GATAATAAAT
331977 AAATAAATAAAAGGTGTA
1 AAAT-AATAAAAGGTGTA
331995 AGAATAATAAAAGGT-TGA
1 A-AATAATAAAAGGTGT-A
332013 AAATAAT
1 AAATAAT
332020 TATGATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 7 0.30
18 13 0.57
19 3 0.13
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.23
Consensus pattern (17 bp):
AAATAATAAAAGGTGTA
Found at i:338520 original size:16 final size:16
Alignment explanation
Indices: 338499--338541 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
338489 TGTAAGTTAT
* *
338499 CTTCATTTTCTCTTTA
1 CTTCATTTCCTATTTA
338515 CTTCATTTCCTATTTA
1 CTTCATTTCCTATTTA
338531 CTTCATTTCCT
1 CTTCATTTCCT
338542 TTGCTTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (16 bp):
CTTCATTTCCTATTTA
Found at i:344043 original size:18 final size:18
Alignment explanation
Indices: 344022--344078 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
344012 CTTTTTGAAA
344022 TTTTGCCTTTTTTTTTCC
1 TTTTGCCTTTTTTTTTCC
* **
344040 TTTTTG-GTTTTTTTTTTT
1 -TTTTGCCTTTTTTTTTCC
*
344058 TTTTACC-TTTTTTTTCC
1 TTTTGCCTTTTTTTTTCC
344075 TTTT
1 TTTT
344079 TTGTTTTTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 16 0.53
18 9 0.30
19 5 0.17
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTGCCTTTTTTTTTCC
Found at i:344050 original size:25 final size:25
Alignment explanation
Indices: 344022--344080 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
344012 CTTTTTGAAA
344022 TTTTGCCTTTTTTTTT-CCTTTTTGG
1 TTTT-CCTTTTTTTTTACCTTTTTGG
**
344047 TTTTTTTTTTTTTTTACC-TTTT--
1 TTTTCCTTTTTTTTTACCTTTTTGG
344069 TTTTCCTTTTTT
1 TTTTCCTTTTTT
344081 GTTTTTGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
22 10 0.34
24 13 0.45
25 6 0.21
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.80
Consensus pattern (25 bp):
TTTTCCTTTTTTTTTACCTTTTTGG
Found at i:348321 original size:26 final size:27
Alignment explanation
Indices: 348274--348332 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
348264 GAGTGCAAAA
*
348274 AGAAAAG-ACAAAAAGAAGAAAAT-TC
1 AGAAAAGAACAAAAAGAAAAAAATCTC
*
348299 AGAAAAGAATAAAAAGAAAAAAATCTC
1 AGAAAAGAACAAAAAGAAAAAAATCTC
348326 A-AAAAGA
1 AGAAAAGA
348333 GAAAAGCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 7 0.23
26 20 0.67
27 3 0.10
ACGTcount: A:0.71, C:0.07, G:0.14, T:0.08
Consensus pattern (27 bp):
AGAAAAGAACAAAAAGAAAAAAATCTC
Found at i:355046 original size:17 final size:16
Alignment explanation
Indices: 355005--355076 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 16
354995 CTTCATGCAT
355005 CTAGTTCATTGAATAAA
1 CTAGTTCATT-AATAAA
*
355022 GTTAGTTCATTAATTAAA
1 -CTAGTTCATTAA-TAAA
*
355040 CTAGTTCATTCATCAAA
1 CTAGTTCATTAAT-AAA
355057 CTAGTTCATTTAATAAA
1 CTAGTTCA-TTAATAAA
355074 CTA
1 CTA
355077 AATCTTAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
16 1 0.02
17 29 0.62
18 17 0.36
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (16 bp):
CTAGTTCATTAATAAA
Found at i:355502 original size:24 final size:24
Alignment explanation
Indices: 355475--355528 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
355465 TCAAAGCATT
355475 CAAGGCTGATTTAATCATCCAAAC
1 CAAGGCTGATTTAATCATCCAAAC
* *
355499 CAAGGGTTGATTTAATCATTCAAAC
1 CAA-GGCTGATTTAATCATCCAAAC
*
355524 AAAGG
1 CAAGG
355529 GTTGTTCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (24 bp):
CAAGGCTGATTTAATCATCCAAAC
Found at i:355509 original size:25 final size:25
Alignment explanation
Indices: 355481--355532 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
355471 CATTCAAGGC
*
355481 TGATTTAATCATCCAAACCAAGGGT
1 TGATTTAATCATCCAAACAAAGGGT
*
355506 TGATTTAATCATTCAAACAAAGGGT
1 TGATTTAATCATCCAAACAAAGGGT
355531 TG
1 TG
355533 TTCATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (25 bp):
TGATTTAATCATCCAAACAAAGGGT
Found at i:380512 original size:21 final size:21
Alignment explanation
Indices: 380488--380528 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
380478 CATGAATAAA
380488 ATGTGTCGTTAATATTAATAC
1 ATGTGTCGTTAATATTAATAC
380509 ATGTGTCGTTAATATTAATA
1 ATGTGTCGTTAATATTAATA
380529 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTGTCGTTAATATTAATAC
Found at i:380533 original size:2 final size:2
Alignment explanation
Indices: 380526--380563 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
380516 GTTAATATTA
380526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
380564 GTATGTGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:395093 original size:8 final size:8
Alignment explanation
Indices: 395082--395106 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
395072 TCTTTTTCTT
395082 TTCTTTTC
1 TTCTTTTC
395090 TTCTTTTC
1 TTCTTTTC
395098 TTCTTTTC
1 TTCTTTTC
395106 T
1 T
395107 AATTTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (8 bp):
TTCTTTTC
Found at i:399300 original size:24 final size:21
Alignment explanation
Indices: 399266--399308 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
399256 TCCACAAGAT
*
399266 ATGTCCTTTGACATTTCAAAGG
1 ATGTCCTTTGA-AATTCAAAGG
399288 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
399309 AGAATGAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:403192 original size:131 final size:132
Alignment explanation
Indices: 402958--403220 Score: 485
Period size: 131 Copynumber: 2.0 Consensus size: 132
402948 AAAAGAAATT
*
402958 TGTCATTTTCTCTATCTCTTTCAACTCTTCTTGTTTCTAGAGTAAATGTAAAACCTTTAGGGGCC
1 TGTCATTTTCTCTATCTCTTTCAACTCTTCTTGTTTCTAGAGTAAATGTAAAACCTTTAAGGGCC
403023 TACTCTTGTAATCTGGTCTAACAATGGTAACAATCATAA-CC-CATCTTTAAAAGCTATAAAGCG
66 TACTCTTGTAATCTGGTCTAACAATGGTAACAATCATAACCCTCATC-TTAAAAGCTATAAAGCG
403086 AGC
130 AGC
403089 TGTCATTTTCTCTATCTCTTTCAACTCTTCTTGTTTCTAGAGTAAATGTAAAACCTTTAAGGGCC
1 TGTCATTTTCTCTATCTCTTTCAACTCTTCTTGTTTCTAGAGTAAATGTAAAACCTTTAAGGGCC
*
403154 TACTCTTGTAATCTGGTCTAACAATGGTAACAATCATAACCCTCATCTTAAAAGCTATAAATCGA
66 TACTCTTGTAATCTGGTCTAACAATGGTAACAATCATAACCCTCATCTTAAAAGCTATAAAGCGA
403219 GC
131 GC
403221 CCTCAACCTC
Statistics
Matches: 128, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
131 103 0.80
132 21 0.16
133 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (132 bp):
TGTCATTTTCTCTATCTCTTTCAACTCTTCTTGTTTCTAGAGTAAATGTAAAACCTTTAAGGGCC
TACTCTTGTAATCTGGTCTAACAATGGTAACAATCATAACCCTCATCTTAAAAGCTATAAAGCGA
GC
Found at i:409808 original size:15 final size:15
Alignment explanation
Indices: 409788--409829 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
409778 CTTCATGGGG
*
409788 TAAGAAGACAACGTC
1 TAAGAAGAAAACGTC
409803 TAAGAAGAAAACGTC
1 TAAGAAGAAAACGTC
*
409818 AAAGAAGGAAAA
1 TAAGAA-GAAAA
409830 GAAAGCATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.57, C:0.12, G:0.21, T:0.10
Consensus pattern (15 bp):
TAAGAAGAAAACGTC
Found at i:412063 original size:21 final size:21
Alignment explanation
Indices: 412025--412064 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
412015 AACTTCCAAT
* **
412025 TAATCTTTTTTTTGTTAATAC
1 TAATATTTTTTTAATTAATAC
412046 TAATATTTTTTTAATTAAT
1 TAATATTTTTTTAATTAAT
412065 GCTTTATGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TAATATTTTTTTAATTAATAC
Found at i:413712 original size:51 final size:50
Alignment explanation
Indices: 413639--413751 Score: 124
Period size: 51 Copynumber: 2.2 Consensus size: 50
413629 AGAACTTGTT
* *
413639 GAAAAAGAAGAGGAGAATGGAGAAGGGACGCCG-AAGATGGAAAAAGAGAAA
1 GAAAAAGAAGAGGAGAAAGGAGAAGGGACACCGCAA-A-GGAAAAAGAGAAA
*
413690 GAAAAGGAAGAGG-GTAAAGGAGAAGGGACACCGCAAAGGAAAAAG-GAAGA
1 GAAAAAGAAGAGGAG-AAAGGAGAAGGGACACCGCAAAGGAAAAAGAGAA-A
*
413740 GGAGAAAGAAGA
1 -GAAAAAGAAGA
413752 AGGGACACCG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
49 3 0.06
50 10 0.19
51 38 0.72
52 2 0.04
ACGTcount: A:0.53, C:0.06, G:0.38, T:0.03
Consensus pattern (50 bp):
GAAAAAGAAGAGGAGAAAGGAGAAGGGACACCGCAAAGGAAAAAGAGAAA
Found at i:413754 original size:26 final size:26
Alignment explanation
Indices: 413725--413793 Score: 61
Period size: 26 Copynumber: 2.7 Consensus size: 26
413715 GGACACCGCA
413725 AAGGAAAAAGGAAGAGGAGAAAG-AAG
1 AAGG-AAAAGGAAGAGGAGAAAGAAAG
* **
413751 AAGGGACACCGAAGAGG-GAAAGAAAG
1 AA-GGAAAAGGAAGAGGAGAAAGAAAG
* *
413777 AAAGAAAAGGATGAGGA
1 AAGGAAAAGGAAGAGGA
413794 ACACCACAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
25 14 0.44
26 16 0.50
27 2 0.06
ACGTcount: A:0.57, C:0.04, G:0.38, T:0.01
Consensus pattern (26 bp):
AAGGAAAAGGAAGAGGAGAAAGAAAG
Found at i:414318 original size:12 final size:12
Alignment explanation
Indices: 414303--414328 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
414293 CGGGTTTGTA
414303 TTTTCATTTGAT
1 TTTTCATTTGAT
414315 TTTTCATTTGAT
1 TTTTCATTTGAT
414327 TT
1 TT
414329 CAATATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTCATTTGAT
Found at i:415824 original size:2 final size:2
Alignment explanation
Indices: 415817--415847 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
415807 TCAATCTAAA
415817 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
415848 AAATTTCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:416010 original size:85 final size:85
Alignment explanation
Indices: 415897--416130 Score: 319
Period size: 85 Copynumber: 2.7 Consensus size: 85
415887 GTCTTTTTAA
* * * *
415897 ATGACGTGTGCTTCAATGACCCGCAATGTAAGTCATATATGCGTGTCATAAATTTATGACACACA
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
415962 AA-TGTATGTCAAAC-AGATTT
66 AAGTGTATGTC-AACTA-ATTT
*
415982 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACA
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
416047 AATGTGTGTGTCATCTTAATTT
66 AA-GTGTATGTCAAC-TAATTT
* *
416069 ATGACGGGGGATTTAATGACGCGCAATGTAAGTCATACATGCGTGTCATATTAATTTATGAC
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATA--AATTTATGAC
416131 GGAGGCTTTA
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
85 62 0.46
86 2 0.01
87 59 0.44
88 1 0.01
89 10 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (85 bp):
ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
AAGTGTATGTCAACTAATTT
Found at i:416103 original size:87 final size:85
Alignment explanation
Indices: 415908--416131 Score: 317
Period size: 87 Copynumber: 2.6 Consensus size: 85
415898 TGACGTGTGC
* * *
415908 TTCAATGACCCGCAATGTAAGTCATATATGCGTGTCATAAATTTATGACACACAAATGTATGTCA
1 TTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTATGTCA
*
415973 AACAGATTTATGACGGGGGC
66 AACAGATTTATGACGGGGGA
*
415993 TTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTGTGTGT
1 TTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAA--TGTATGT
*
416058 C-ATCTTA-ATTTATGACGGGGGA
64 CAAAC--AGATTTATGACGGGGGA
*
416080 TTTAATGACGCGCAATGTAAGTCATACATGCGTGTCATATTAATTTATGACG
1 TTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATA--AATTTATGACG
416132 GAGGCTTTAA
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
85 53 0.42
86 2 0.02
87 59 0.47
88 1 0.01
89 11 0.09
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (85 bp):
TTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACGCACAAATGTATGTCA
AACAGATTTATGACGGGGGA
Found at i:416142 original size:57 final size:57
Alignment explanation
Indices: 416054--416175 Score: 190
Period size: 57 Copynumber: 2.1 Consensus size: 57
416044 ACAAATGTGT
* * * *
416054 GTGTCATCTTAATTTATGACGGGGGATTTAATGACGCGCAATGTAAGTCATACATGC
1 GTGTCATATTAATTTATGACGGAGGATTTAATGACACGCAATGTAAGTCATACATGA
*
416111 GTGTCATATTAATTTATGACGGAGGCTTTAATGACACGCAATGTAAGTCATACATGA
1 GTGTCATATTAATTTATGACGGAGGATTTAATGACACGCAATGTAAGTCATACATGA
*
416168 GCGTCATA
1 GTGTCATA
416176 AATGCGCGTC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (57 bp):
GTGTCATATTAATTTATGACGGAGGATTTAATGACACGCAATGTAAGTCATACATGA
Found at i:424376 original size:47 final size:44
Alignment explanation
Indices: 424278--424403 Score: 155
Period size: 47 Copynumber: 2.8 Consensus size: 44
424268 GTAACCATGC
* ** *
424278 AAATAAGCTTATGAGCTTACAGAAT-AATGGCAAGTATATTGGA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGA
*
424321 AAATTAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAA-TAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATTGG-A
*
424369 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
424404 AGATTTAATA
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.04
44 18 0.25
45 11 0.15
46 1 0.01
47 35 0.49
48 4 0.06
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (44 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGA
Found at i:424799 original size:29 final size:30
Alignment explanation
Indices: 424766--424822 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
424756 TGTTGAAATT
*
424766 ACTGTAGCAG-TATTGTAGCGTATCGATGC
1 ACTGTAGCAGTTACTGTAGCGTATCGATGC
424795 ACTGTAGCAGTTACTGTAGCGTATCGAT
1 ACTGTAGCAGTTACTGTAGCGTATCGAT
424823 ACATAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (30 bp):
ACTGTAGCAGTTACTGTAGCGTATCGATGC
Found at i:426405 original size:26 final size:25
Alignment explanation
Indices: 426365--426413 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
426355 CCTAGAACAC
426365 CCATGTGCATGGCATATGACCATCCA
1 CCATGTGCATGGCATATG-CCATCCA
* * *
426391 CCATGTGCCTTGCATGTGCCATC
1 CCATGTGCATGGCATATGCCATC
426414 ATTTAGGTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (25 bp):
CCATGTGCATGGCATATGCCATCCA
Found at i:427229 original size:23 final size:24
Alignment explanation
Indices: 427203--427252 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
427193 TCTTGCAAAG
*
427203 AAATCAAAGTACTC-AAAAGAAGA
1 AAATCAAAGCACTCAAAAAGAAGA
***
427226 AAATTTCAGCACTCAAAAAGAAGA
1 AAATCAAAGCACTCAAAAAGAAGA
427250 AAA
1 AAA
427253 GTTGAAAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (24 bp):
AAATCAAAGCACTCAAAAAGAAGA
Found at i:432758 original size:23 final size:23
Alignment explanation
Indices: 432715--432759 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
432705 ATCACCATGA
** *
432715 GCAATGTTATGGTTGCTACATAT
1 GCAATGTTATGACTGCCACATAT
432738 GCAATGTTATGACTGCCACATA
1 GCAATGTTATGACTGCCACATA
432760 CAATAATCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (23 bp):
GCAATGTTATGACTGCCACATAT
Found at i:435188 original size:54 final size:53
Alignment explanation
Indices: 435122--435466 Score: 449
Period size: 54 Copynumber: 6.4 Consensus size: 53
435112 TTTCATGGAG
* * * * * * *
435122 TGCACACGTAGTGCCGATATGATCATTCGTAAAATTATTATGAATTATGTGGTT
1 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATT-TGTGGGT
*
435176 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATTCTATGGGT
1 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATT-TGTGGGT
*
435230 TGCACACTTAGTATCGATACGGTCATTCATAAACTTATTATGAATTATGTGGGT
1 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATT-TGTGGGT
* * *
435284 TGCAGACTTAGTGTCGATATGGTCGTTCATAAACTTATTATGAATTTCGTGGGT
1 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATTT-GTGGGT
* *
435338 TTCACACTTAGTGAT-GATAAGGTCATTCATAAACTTATTATGAATTTCGTGGGT
1 TGCACACTTAGTG-TCGATACGGTCATTCATAAACTTATTATGAATTT-GTGGGT
* *
435392 TGCACAGTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATTTTGTAGGT
1 TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAA-TTTGTGGGT
* * *
435446 TGCACACCTGGTGTAGATACG
1 TGCACACTTAGTGTCGATACG
435467 TAAAATACAA
Statistics
Matches: 259, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.01
54 253 0.98
55 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (53 bp):
TGCACACTTAGTGTCGATACGGTCATTCATAAACTTATTATGAATTTGTGGGT
Found at i:440289 original size:22 final size:24
Alignment explanation
Indices: 440264--440312 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
440254 AGGGATTTTA
440264 TTATTTAA-AATT-AATTAAATAT
1 TTATTTAATAATTAAATTAAATAT
440286 TTATTTAATTAATTCAAATTAAATAT
1 TTATTTAA-TAATT-AAATTAAATAT
440312 T
1 T
440313 CAGGATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.35
24 4 0.17
26 11 0.48
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTATTTAATAATTAAATTAAATAT
Found at i:441538 original size:24 final size:24
Alignment explanation
Indices: 441511--441556 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
441501 GAATTGATTG
*
441511 ATGATAATGAATTGTCATTGACTA
1 ATGACAATGAATTGTCATTGACTA
*
441535 ATGACAATGAGTTGTCATTGAC
1 ATGACAATGAATTGTCATTGAC
441557 ATAGAGATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (24 bp):
ATGACAATGAATTGTCATTGACTA
Found at i:441967 original size:31 final size:32
Alignment explanation
Indices: 441919--442027 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 32
441909 GTTTGACTTG
* *
441919 AACCTAAAA-CAACCTGAACCAAAATTAATCCA
1 AACC-AAAAGCAATCTGAACCAAAATTAACCCA
* * * *
441951 AA-TAAAAGTAATCTGAATCGAAATTAACCCA
1 AACCAAAAGCAATCTGAACCAAAATTAACCCA
* * * *
441982 AACCAAAAGCAATTTGAACCAAAACATATCTCA
1 AACCAAAAGCAATCTGAACCAAAA-TTAACCCA
442015 AACCAAAAGCAAT
1 AACCAAAAGCAAT
442028 TCGTATATAA
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
30 4 0.07
31 20 0.33
32 18 0.30
33 18 0.30
ACGTcount: A:0.53, C:0.23, G:0.06, T:0.17
Consensus pattern (32 bp):
AACCAAAAGCAATCTGAACCAAAATTAACCCA
Found at i:442003 original size:16 final size:16
Alignment explanation
Indices: 441980--442029 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
441970 GAAATTAACC
441980 CAAACCAAAAGCAATT
1 CAAACCAAAAGCAATT
**
441996 TGAACCAAAA-CATATCT
1 CAAACCAAAAGCA-AT-T
442013 CAAACCAAAAGCAATT
1 CAAACCAAAAGCAATT
442029 C
1 C
442030 GTATATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
15 2 0.07
16 12 0.44
17 11 0.41
18 2 0.07
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (16 bp):
CAAACCAAAAGCAATT
Found at i:460665 original size:3 final size:3
Alignment explanation
Indices: 460657--460685 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
460647 ATAATGAATG
460657 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
460686 AACTATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:461520 original size:22 final size:24
Alignment explanation
Indices: 461463--461521 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 24
461453 ATCTTCCTCC
*
461463 CTTCATTTTT-TACATTTATTCTT
1 CTTCATTTTTCCACATTTATTCTT
*
461486 CTT-TTTTTCTCCAC-TTT-TTCTT
1 CTTCATTTT-TCCACATTTATTCTT
461508 CTTCATTTTTCCAC
1 CTTCATTTTTCCAC
461522 CTAAGTACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 17 0.57
23 11 0.37
24 2 0.07
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.63
Consensus pattern (24 bp):
CTTCATTTTTCCACATTTATTCTT
Found at i:461999 original size:20 final size:20
Alignment explanation
Indices: 461974--462011 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
461964 TGGGTTAGAG
*
461974 TATCGATACTGGATGAACAA
1 TATCGATACTAGATGAACAA
*
461994 TATCGATGCTAGATGAAC
1 TATCGATACTAGATGAAC
462012 TTGGATGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (20 bp):
TATCGATACTAGATGAACAA
Found at i:462105 original size:20 final size:20
Alignment explanation
Indices: 462068--462111 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
462058 ACTCTAAGGA
* *
462068 GATACTCTTACCAAAGTATG
1 GATACACTTACCAAAGTATC
**
462088 GATACACTTACCCTAGTATC
1 GATACACTTACCAAAGTATC
462108 GATA
1 GATA
462112 TTGAAAGTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (20 bp):
GATACACTTACCAAAGTATC
Found at i:469105 original size:2 final size:2
Alignment explanation
Indices: 469098--469134 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
469088 AATATAAAAC
469098 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
469135 GAGTTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:471130 original size:19 final size:20
Alignment explanation
Indices: 471094--471140 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
471084 TATGATGAGC
471094 TAAAACTTATGAAAAATCAT
1 TAAAACTTATGAAAAATCAT
471114 TAAAACTTATG-AAAATCAT
1 TAAAACTTATGAAAAATCAT
471133 TAAAACTT
1 TAAAACTT
471141 TAAAATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (20 bp):
TAAAACTTATGAAAAATCAT
Found at i:471699 original size:19 final size:20
Alignment explanation
Indices: 471672--471709 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
471662 TCATTTTGTT
471672 TTTCAAAATCAAAT-ATTTC
1 TTTCAAAATCAAATCATTTC
*
471691 TTTCGAAATCAAATCATTT
1 TTTCAAAATCAAATCATTT
471710 TCAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (20 bp):
TTTCAAAATCAAATCATTTC
Found at i:475061 original size:3 final size:3
Alignment explanation
Indices: 475053--475115 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
475043 GGCCTGTTTG
* *
475053 TAA TAA TAA TAA TAT TAA TAA TAA -AGA TATA TAA TAAA TAA TAA T-G
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA T-AA TAA TAA TAA
475099 TAA T-A TAAA TAA TAA TA
1 TAA TAA T-AA TAA TAA TA
475116 TAAATAAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
2 4 0.08
3 36 0.73
4 9 0.18
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:475073 original size:12 final size:12
Alignment explanation
Indices: 475056--475122 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
475046 CTGTTTGTAA
475056 TAATAATAATAT
1 TAATAATAATAT
*
475068 TAATAATAA-AGA
1 TAATAATAATA-T
475080 TATATAATAA-A-
1 TA-ATAATAATAT
475091 TAATAATGTAATAT
1 TAATAA--TAATAT
*
475105 AAATAATAATAT
1 TAATAATAATAT
*
475117 AAATAA
1 TAATAA
475123 AACCGAGACA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
10 4 0.09
11 3 0.06
12 26 0.55
13 9 0.19
14 5 0.11
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:475106 original size:17 final size:17
Alignment explanation
Indices: 475054--475123 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
475044 GCCTGTTTGT
*
475054 AATAATAA--TAATATT
1 AATAATAATGTAATATA
*
475069 AATAATAAAGATATATAATA
1 AATAATAATG-TA-AT-ATA
475089 AATAATAATGTAATATA
1 AATAATAATGTAATATA
*
475106 AATAATAATATAA-ATA
1 AATAATAATGTAATATA
475122 AA
1 AA
475124 ACCGAGACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
15 8 0.17
16 5 0.11
17 15 0.32
18 4 0.09
19 4 0.09
20 11 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
AATAATAATGTAATATA
Found at i:475739 original size:111 final size:111
Alignment explanation
Indices: 475446--475962 Score: 783
Period size: 111 Copynumber: 4.7 Consensus size: 111
475436 TAGAGTCATA
* * * * *
475446 CAAAAGGCTGAACAAATTATTCTCATTATGAACTTCTTCTCCTCTTCAGATGAGTTCTTCTTATT
1 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
* * * *
475511 ATGAACTCTACCTGGCAATACTGATCCATCGAATGATGAAATCGAG
66 ATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
*
475557 CAAAAAGTTGAATAA-TTCTTCTCATTATGAA---CTTCTTCTCTTCAGATGAGTTCTTCTTATT
1 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
475618 ATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
66 ATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
*
475664 CGAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
1 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
*
475729 ATGAACTCTACCTCGTAATGCTGATCCATCGAATGATGAATTCAAG
66 ATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
* *
475775 CGAAAGGTTGAATAAGTTC-TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTT-C-TCTTCAGATGAGTTCTTCTTA
* *
475839 TTATGAACTCTACCTGGTAATGTTGATCCATCGAATGTTGAATTCAAG
64 TTATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
* * * *
475887 CAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCA
1 CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTT-C-TCTTCAGATGAGTTCTTCTTA
475952 TTATGAACTCT
64 TTATGAACTCT
475963 TCTGGAAATG
Statistics
Matches: 379, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
107 84 0.22
108 16 0.04
110 36 0.09
111 107 0.28
112 81 0.21
113 55 0.15
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (111 bp):
CAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
ATGAACTCTACCTGGTAATGCTGATCCATCGAATGATGAATTCAAG
Found at i:475921 original size:223 final size:218
Alignment explanation
Indices: 475446--475962 Score: 784
Period size: 218 Copynumber: 2.3 Consensus size: 218
475436 TAGAGTCATA
* * * *
475446 CAAAAGGCTGAACAAATTATTCTCATTATGAACTTCTTCTCCTCTTCAGATGAGTTCTTCTTATT
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
* *
475511 ATGAACTCTACCTGGCAATACTGATCCATCGAATGATGAAATCGAGCAAAAAGTTGAATAATTCT
66 ATGAACTCTACCTCGCAATACTGATCCATCGAATGATGAAATCAAGCAAAAAGTTGAATAATTCT
*
475576 TCTCATTATGAACTTCTTCTCTTCAGATGAGTTCTTCTTATTATGAACTCTACCTGGTAATGCTG
131 TCTCATTATGAACTTCTTCTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGCTG
475641 ATCCATCGAATGATGAATTCAAG
196 ATCCATCGAATGATGAATTCAAG
* *
475664 CGAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
* * * * *
475729 ATGAACTCTACCTCGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAGGTTGAATAAGTTC
66 ATGAACTCTACCTCGCAATACTGATCCATCGAATGATGAAATCAAGCAAAAAGTTGAATAA-TTC
475794 -TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGTA
130 TTCTCATTATGAA---CTTCTT-C-TCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGTA
* *
475858 ATGTTGATCCATCGAATGTTGAATTCAAG
190 ATGCTGATCCATCGAATGATGAATTCAAG
* * *
475887 CAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-C-TCTTCAGATGAGTTCTTCTTA
475952 TTATGAACTCT
64 TTATGAACTCT
475963 TCTGGAAATG
Statistics
Matches: 270, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
218 125 0.46
219 3 0.01
221 6 0.02
222 1 0.00
223 104 0.39
224 1 0.00
225 30 0.11
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (218 bp):
CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTCTTCAGATGAGTTCTTCTTATT
ATGAACTCTACCTCGCAATACTGATCCATCGAATGATGAAATCAAGCAAAAAGTTGAATAATTCT
TCTCATTATGAACTTCTTCTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGCTG
ATCCATCGAATGATGAATTCAAG
Found at i:476102 original size:76 final size:76
Alignment explanation
Indices: 475976--476282 Score: 569
Period size: 76 Copynumber: 4.0 Consensus size: 76
475966 GGAAATGCTT
* * *
475976 ATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
476041 AGGACTTACAG
66 AGGACTTACAG
*
476052 ATGACCCTAAAGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
476117 AGGACTTACAG
66 AGGACTTACAG
*
476128 ATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
476193 AGGACTTACAG
66 AGGACTTACAG
476204 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
1 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
476269 AGGACTTACAG
66 AGGACTTACAG
476280 ATG
1 ATG
476283 TGGGAAATAG
Statistics
Matches: 224, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 224 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (76 bp):
ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGT
AGGACTTACAG
Done.