Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008209.1 Hibiscus syriacus cultivar Beakdansim tig00110831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6561538
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 30
Found at i:4194083 original size:149 final size:149
Alignment explanation
Indices: 4193769--4194084 Score: 598
Period size: 149 Copynumber: 2.1 Consensus size: 149
4193759 GAGTCGAGGG
4193769 TTCTACGTGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TTCTACGTGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
*
4193834 TACTTGATCCCTAGTATATGTGTATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
4193899 ATATGGCACTACGGTGCAA
131 ATATGGCACTACGGTGCAA
*
4193918 TTCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TTCTACGTGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
4193983 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
4194048 ATATGGCACTACGGTGCAA
131 ATATGGCACTACGGTGCAA
4194067 TTCTACGTGG-CACTTCGG
1 TTCTACGTGGTC-CTTCGG
4194085 TGCAATTATA
Statistics
Matches: 163, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
148 1 0.01
149 162 0.99
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (149 bp):
TTCTACGTGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
ATATGGCACTACGGTGCAA
Found at i:4194085 original size:23 final size:23
Alignment explanation
Indices: 4194051--4194096 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
4194041 CATTATTATA
*
4194051 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
4194074 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
4194097 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:4204189 original size:19 final size:19
Alignment explanation
Indices: 4204165--4204206 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
4204155 TGATATGATA
*
4204165 TTTTTATAGGGCCCCCAAT
1 TTTTTATAGGACCCCCAAT
*
4204184 TTTTTATAGGACCCCTAAT
1 TTTTTATAGGACCCCCAAT
4204203 TTTT
1 TTTT
4204207 CTATTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (19 bp):
TTTTTATAGGACCCCCAAT
Found at i:4204335 original size:43 final size:42
Alignment explanation
Indices: 4204262--4204580 Score: 153
Period size: 43 Copynumber: 7.5 Consensus size: 42
4204252 AATTTTAGTT
*
4204262 TTTTTTATCTTTATAATTGAGATTCCTAATTTTTGT-AATCCTA
1 TTTTTTATCTTTATAATTGAGA-GCCTAATTTTT-TCAATCCTA
4204305 TTTTTTATCTTTATAATTGAG-GCCATTAATTTTTTCAATCCTA
1 TTTTTTATCTTTATAATTGAGAGCC--TAATTTTTTCAATCCTA
* * * * * *
4204348 TTTTTTTTACATTTATTATTGATGATCATAAGTTTTTCAATCCCA
1 TTTTTTAT-C-TTTATAATTGA-GAGCCTAATTTTTTCAATCCTA
* * * **
4204393 CTTTATA-CATTTATAATTAAGCTCCT-ATTTTTTCAAT-CTCA
1 TTTTTTATC-TTTATAATTGAGAGCCTAATTTTTTCAATCCT-A
* * **
4204434 ATTTTTACCAATATAATTGAG-GCCCCTAATTTTTTCAATCCCT-
1 TTTTTTATCTTTATAATTGAGAG--CCTAATTTTTTCAAT-CCTA
* *
4204477 TTTTTTA-CTTGTATAATTTAG-GCCCCTAA-TTTTTCAA-CATCA
1 TTTTTTATCTT-TATAATTGAGAG--CCTAATTTTTTCAATCCT-A
* * * * *
4204519 CTTTTTACCTTTAAAATTGAGACCACT-ATTTTTT-TA-CCTCA
1 TTTTTTATCTTTATAATTGAGAGC-CTAATTTTTTCAATCCT-A
* *
4204560 CTTTTTATCTTTACAATTGAG
1 TTTTTTATCTTTATAATTGAG
4204581 GTCCCTATCT
Statistics
Matches: 220, Mismatches: 35, Indels: 44
0.74 0.12 0.15
Matches are distributed among these distances:
40 3 0.01
41 53 0.24
42 39 0.18
43 91 0.41
44 1 0.00
45 31 0.14
46 1 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (42 bp):
TTTTTTATCTTTATAATTGAGAGCCTAATTTTTTCAATCCTA
Found at i:4204384 original size:45 final size:42
Alignment explanation
Indices: 4204260--4204390 Score: 129
Period size: 45 Copynumber: 3.0 Consensus size: 42
4204250 TTAATTTTAG
* *
4204260 TTTTTTTTATCTTTATAATTGAGATTCCTAATTTTTGTAATCCTA
1 TTTTTTTTA-CTTTATAATTGAGA-TCATAATTTTT-CAATCCTA
* **
4204305 TTTTTTAT-CTTTATAATTGAGGCCATTAATTTTTTCAATCCTA
1 TTTTTTTTACTTTATAATTGAGATCA-TAA-TTTTTCAATCCTA
*
4204348 TTTTTTTTACATTTATTATTGATGATCATAAGTTTTTCAATCC
1 TTTTTTTTAC-TTTATAATTGA-GATCATAA-TTTTTCAATCC
4204391 CACTTTATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.01
43 30 0.42
44 6 0.08
45 31 0.44
46 3 0.04
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.56
Consensus pattern (42 bp):
TTTTTTTTACTTTATAATTGAGATCATAATTTTTCAATCCTA
Found at i:4204537 original size:85 final size:84
Alignment explanation
Indices: 4204380--4204553 Score: 190
Period size: 85 Copynumber: 2.1 Consensus size: 84
4204370 TGATCATAAG
* *
4204380 TTTTTCAATCCCACTTTATACATTTATAATTAAGCTCCTATTTTTTCAATCTCAATTTTTACCAA
1 TTTTTCAATCCCACTTTATACATTTATAATTAAGCCCCTAATTTTTCAATCTCAATTTTTACCAA
* * *
4204445 TATAATTGAGGCCCCTAAT
66 TAAAATTGAGACCACTAAT
** * * *
4204464 TTTTTCAATCCCTTTTTTTAC-TTGTATAATTTAGGCCCCTAATTTTTCAA-CATCACTTTTTAC
1 TTTTTCAATCCCACTTTATACATT-TATAA-TTAAGCCCCTAATTTTTCAATC-TCAATTTTTAC
** *
4204527 CTTTAAAATTGAGACCACTATT
63 CAATAAAATTGAGACCACTAAT
4204549 TTTTT
1 TTTTT
4204554 ACCTCACTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
83 2 0.03
84 24 0.32
85 48 0.65
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.47
Consensus pattern (84 bp):
TTTTTCAATCCCACTTTATACATTTATAATTAAGCCCCTAATTTTTCAATCTCAATTTTTACCAA
TAAAATTGAGACCACTAAT
Found at i:4204594 original size:41 final size:41
Alignment explanation
Indices: 4204516--4204594 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
4204506 TTTTTCAACA
*
4204516 TCACTTTTTACCTTTAAAATTGAGACCACTATTTTTTTACC
1 TCACTTTTTACCTTTAAAATTGAGACCACTATCTTTTTACC
* * *
4204557 TCACTTTTTATCTTTACAATTGAGGTCC-CTATCTTTTT
1 TCACTTTTTACCTTTAAAATTGA-GACCACTATCTTTTT
4204595 CAAGCATACT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 30 0.91
42 3 0.09
ACGTcount: A:0.23, C:0.22, G:0.06, T:0.49
Consensus pattern (41 bp):
TCACTTTTTACCTTTAAAATTGAGACCACTATCTTTTTACC
Found at i:4205164 original size:39 final size:37
Alignment explanation
Indices: 4205087--4205366 Score: 186
Period size: 38 Copynumber: 7.6 Consensus size: 37
4205077 TGAAACTACG
* * * *
4205087 TATATAATATATAGTTTTTAATA-GTTTT-TAAAAT-
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
*
4205121 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATATAATATATAGTTTT--AAAAACATTTTGGAAAATA
* *
4205160 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACT-
1 TATATAATATAT-AGTTTTAAAAACATTTTGGAAAA-TA
* * *
4205197 TATATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATA-ATATATAG-TTTTAAAAACATTTTGGAAAATA
* * *
4205236 TATAT-AT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
* * * * *
4205270 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAAATT
1 TATATAATATATAGTTTTAAAAACATTTT-GGAAAATA
* * * *
4205308 TATATAATCT-T--TTTTGAAAACATGTTGGAAAACA
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
* *
4205342 TTCGTATATTATATAGTTTTAAAAA
1 -T-ATATAATATATAGTTTTAAAAA
4205367 AAAAAAAACA
Statistics
Matches: 194, Mismatches: 32, Indels: 35
0.74 0.12 0.13
Matches are distributed among these distances:
34 34 0.18
35 29 0.15
36 32 0.16
37 23 0.12
38 38 0.20
39 33 0.17
40 5 0.03
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
Found at i:4205188 original size:38 final size:37
Alignment explanation
Indices: 4205087--4205339 Score: 168
Period size: 34 Copynumber: 6.9 Consensus size: 37
4205077 TGAAACTACG
* * * *
4205087 TATATAATATATAGTTTTTAATA-GTTTT-TAAAAT-
1 TATATAATATATAATTTTTAAAACATTTTGGAAAATA
* * *
4205121 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATATAATATATAATTTT--TAAAACATTTTGGAAAATA
4205160 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACT-
1 TATATAATATATAATTTTTAAAA-CATTTTGGAAAA-TA
* * *
4205197 TATATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATA-ATATATAATTTTT-AAAACATTTTGGAAAATA
* * * *
4205236 TATAT-AT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATAATATATAATTTTTAAAACATTTTGGAAAATA
* * * * *
4205270 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAAATT
1 TATATAATATATAATTTTTAAAACATTTT-GGAAAATA
* * *
4205308 TATATAATCT-T--TTTTGAAAACATGTTGGAAAA
1 TATATAATATATAATTTTTAAAACATTTTGGAAAA
4205340 CATTCGTATA
Statistics
Matches: 179, Mismatches: 25, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
34 34 0.19
35 23 0.13
36 30 0.17
37 25 0.14
38 33 0.18
39 34 0.19
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TATATAATATATAATTTTTAAAACATTTTGGAAAATA
Found at i:4205229 original size:12 final size:12
Alignment explanation
Indices: 4205212--4205236 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4205202 ATATATATAG
4205212 TTTTTGAAAACA
1 TTTTTGAAAACA
4205224 TTTTTGAAAACA
1 TTTTTGAAAACA
4205236 T
1 T
4205237 ATATATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTTTTGAAAACA
Found at i:4205252 original size:35 final size:36
Alignment explanation
Indices: 4205121--4205366 Score: 187
Period size: 39 Copynumber: 6.6 Consensus size: 36
4205111 TTTTTAAAAT
* * *
4205121 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATAT-ATATATAGTTTT--GAAAACATTTTGGAAAACA
* *
4205160 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACTTA
1 TATAT-ATATATAGTTTTGAAAA-CATTTTGGAAAAC--A
*
4205199 TATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATATATATAG-TTTTGAAAACATTTTGGAAAACA
*
4205236 TATATAT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATATATATAGTTTTGAAAACATTTTGGAAAACA
* * * *
4205270 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAA-A
1 TATATA-TATATAGTTTTGAAAACATTTTGGAAAACA
* ** *
4205306 TTTATATA-ATCTTTTTTGAAAACATGTTGGAAAACA
1 TATATATATAT-AGTTTTGAAAACATTTTGGAAAACA
* *
4205342 TTCGTATATTATATAGTTTTAAAAA
1 -T-ATATA-TATATAGTTTTGAAAA
4205367 AAAAAAAACA
Statistics
Matches: 170, Mismatches: 23, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
34 13 0.08
35 35 0.21
36 30 0.18
37 25 0.15
38 15 0.09
39 50 0.29
40 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (36 bp):
TATATATATATAGTTTTGAAAACATTTTGGAAAACA
Found at i:4205310 original size:34 final size:34
Alignment explanation
Indices: 4205093--4205366 Score: 151
Period size: 36 Copynumber: 7.5 Consensus size: 34
4205083 TACGTATATA
* * * *
4205093 ATATATAGTTTTTAATA-GTTTT-TAAAATTATAT
1 ATATATAGTTTTTAAAACATTTTGGAAAA-TTTAT
* *
4205126 AATATATAGTTTTAAAAAAACATTTTAGAAAATATATAT
1 -ATATATAGTTTT--TAAAACATTTTGGAAAAT-T-TAT
*
4205165 AATATATAATTTTTAAAATCA-TTTGGAAAACTTATATAT
1 -ATATATAGTTTTTAAAA-CATTTTGGAAAA--T-T-TAT
* **
4205204 ATATATAGTTTTTGAAAACATTTTTGAAAACATAT
1 ATATATAGTTTTT-AAAACATTTTGGAAAATTTAT
* * * *
4205239 ATATTATAGTTTTGAAAGCATTTTGAAAACATTTTT
1 ATA-TATAGTTTTTAAAACATTTTGGAAA-ATTTAT
4205275 ATTATATAGTTTTTAAAACATTTTGGGAAAATTTAT
1 A-TATATAGTTTTTAAAACATTTT-GGAAAATTTAT
** *
4205311 ATA-ATCTTTTTTGAAAACATGTTGGAAAACATTCGTAT
1 ATATATAGTTTTT-AAAACATTTTGG-AAA-ATT--TAT
*
4205349 ATTATATAGTTTTAAAAA
1 A-TATATAGTTTTTAAAA
4205367 AAAAAAAACA
Statistics
Matches: 189, Mismatches: 29, Indels: 39
0.74 0.11 0.15
Matches are distributed among these distances:
34 21 0.11
35 32 0.17
36 43 0.23
37 23 0.12
38 24 0.13
39 40 0.21
40 6 0.03
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (34 bp):
ATATATAGTTTTTAAAACATTTTGGAAAATTTAT
Found at i:4205312 original size:72 final size:72
Alignment explanation
Indices: 4205119--4205366 Score: 243
Period size: 72 Copynumber: 3.3 Consensus size: 72
4205109 AGTTTTTAAA
*
4205119 ATTATATAATATATAGTTTTAAAAAAACATTTTAGAAAATATATATAATATATAATTTTT-AAAA
1 ATTATATATTATATAGTTTT--AAAAACATTTTAGAAAATATATAT-AT-TAT-ATTTTTGAAAA
4205183 TCATTTGGAAAAC
61 -CATTTGGAAAAC
* * * * *
4205196 -TTATATATATATATAGTTTTTGAAAACATTTTTGAAAACATATATATTATAGTTTTGAAAGCAT
1 ATTATATAT-TATATAG-TTTTAAAAACATTTTAGAAAATATATATATTATATTTTTGAAAACAT
*
4205260 TTTGAAAAC
64 TTGGAAAAC
* * * * * *
4205269 ATT-TTTATTATATAGTTTTTAAAACATTTTGGGAAAATTTATATAATCT-TTTTTGAAAACATG
1 ATTATATATTATATAGTTTTAAAAACATTTT-AGAAAATATATATATTATATTTTTGAAAACAT-
4205332 TTGGAAAAC
64 TTGGAAAAC
*
4205341 ATTCGTATATTATATAGTTTTAAAAA
1 ATT-ATATATTATATAGTTTTAAAAA
4205367 AAAAAAAACA
Statistics
Matches: 144, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
71 25 0.17
72 31 0.22
73 20 0.14
74 27 0.19
75 2 0.01
76 28 0.19
77 7 0.05
78 4 0.03
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (72 bp):
ATTATATATTATATAGTTTTAAAAACATTTTAGAAAATATATATATTATATTTTTGAAAACATTT
GGAAAAC
Found at i:4205433 original size:3 final size:3
Alignment explanation
Indices: 4205425--4205461 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4205415 TATGTATATA
4205425 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
4205462 TTTCATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4208369 original size:19 final size:19
Alignment explanation
Indices: 4208335--4208379 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
4208325 ATTTAGACAT
4208335 TTTGCA-TTTCTTATTTTC
1 TTTGCATTTTCTTATTTTC
*
4208353 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTCTTATTTTC
4208372 TTTGCATT
1 TTTGCATT
4208380 CACATTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.11, C:0.13, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTGCATTTTCTTATTTTC
Found at i:4211841 original size:84 final size:83
Alignment explanation
Indices: 4211736--4212811 Score: 1199
Period size: 84 Copynumber: 12.9 Consensus size: 83
4211726 TCTGTCCACC
*
4211736 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
4211801 AAGGGTTATCTGCTAACAA
66 AAGGGTTATCTGCTAAC-A
*
4211820 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
*
4211885 AAGGGTTATCTGCCAACTA
66 AAGGGTTATCTGCTAAC-A
* * * * * * * * *
4211904 AAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCTA
*
4211969 GAAGGGTTATCTG-TCACCA
65 GAAGGGTTATCTGCT-AACA
* * *
4211988 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
*
4212053 AAGGGCTATCTGC---CA
66 AAGGGTTATCTGCTAACA
* * * * * *
4212068 AAGACCCTCGAGTTCGACTACGTTCAGCTTCGAAGGCACATCATTTGCAGTATAACTTAAGTCAA
1 AAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
*
4212133 GAAGGGTTATCTGCCAACTA
65 GAAGGGTTATCTGCTAAC-A
* * * * * * * * *
4212153 AAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCTA
4212218 GAAGGGTTATCTG-TAACCA
65 GAAGGGTTATCTGCTAA-CA
* * *
4212237 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
*
4212302 AAGGGCTATCTGC---CA
66 AAGGGTTATCTGCTAACA
* * * * * *
4212317 AAGACCCTCGAGTTCGACTACGTTCAGCTTCGAAGGCACATCATTTGCAGTATAACTTAAGTCAA
1 AAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
*
4212382 GAAGGGTTATCTGCCAACTA
65 GAAGGGTTATCTGCTAAC-A
* * * * * * * * *
4212402 AAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCTA
4212467 GAAGGGTTATCTG-TAACCA
65 GAAGGGTTATCTGCTAA-CA
* * *
4212486 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCAAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
4212551 AAGGGTTATCTGC---CA
66 AAGGGTTATCTGCTAACA
* * * * * * * * * *
4212566 AAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTA
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCTA
*
4212631 GAAGGGTTATCTGTTAACAA
65 GAAGGGTTATCTGCTAAC-A
* * * * *
4212651 AAGACCTTTGAGTTTGACTACGCTCAGCT-CAACGGCATATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCTA
*
4212715 GAAGGGTTATCTG-TCATCA
65 GAAGGGTTATCTGCT-AACA
* * * * *
4212734 AAGACCTTCGAGTGCGACTACGCTCAGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
*
4212799 AAGGGCTATCTGC
66 AAGGGTTATCTGC
4212812 CAAAGACCCC
Statistics
Matches: 835, Mismatches: 130, Indels: 54
0.82 0.13 0.05
Matches are distributed among these distances:
80 84 0.10
81 126 0.15
83 174 0.21
84 259 0.31
85 192 0.23
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (83 bp):
AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTAG
AAGGGTTATCTGCTAACA
Found at i:4212195 original size:249 final size:249
Alignment explanation
Indices: 4211707--4212846 Score: 1768
Period size: 249 Copynumber: 4.6 Consensus size: 249
4211697 TGCAGCTTAG
* *
4211707 CTCAAGGCCAGAAGGGCTATCTGTCCACC-AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGT-CACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGG
* * * * * *
4211771 CACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCTAACAAAAGACCTTTGAGTTCG
65 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGC---C-AAAGACCCTCGAGTTCG
* *
4211836 ACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCA
126 ACTACGCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCA
4211900 ACTAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
191 ACTAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
4211959 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
4212024 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
* *
4212089 GTTCAGCTTCGAAGGCACATCATTTGCAGTATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAA
131 GCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAA
4212154 AGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
196 AGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
*
4212208 CTCAAGGCTAGAAGGGTTATCTGTAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
4212273 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
* *
4212338 GTTCAGCTTCGAAGGCACATCATTTGCAGTATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAA
131 GCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAA
4212403 AGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
196 AGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
*
4212457 CTCAAGGCTAGAAGGGTTATCTGTAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
* * ** *
4212522 ACATCATTTGCAGAATAGCTTAAGTCAAGAAGGGTTATCTGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
* * * * * * * ** *
4212587 ACTCAGCTTC-AAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAACAA
131 GCTCAGCTTCGAA-GGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTA
* * * * * *
4212651 AAGACCTTTGAGTTTGACTACGCTCAGC-TCAACGGCATATCATTTACAGCATAA
195 AAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * *
4212705 CTCAAGGCTAGAAGGGTTATCTGTCATCAAAGACCTTCGAGTGCGACTACGCTCAGCTCTAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
* * *
4212770 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCC-CTGGGTTCGATTA
66 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTC-GAGTTCGACTA
* *
4212834 CACTCAACTTCGA
130 CGCTCAGCTTCGA
4212847 GGTCATATCA
Statistics
Matches: 835, Mismatches: 48, Indels: 13
0.93 0.05 0.01
Matches are distributed among these distances:
248 180 0.22
249 555 0.66
251 4 0.00
252 96 0.11
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (249 bp):
CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGC
ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
GCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAA
AGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
Found at i:4213561 original size:39 final size:37
Alignment explanation
Indices: 4213484--4213763 Score: 186
Period size: 38 Copynumber: 7.6 Consensus size: 37
4213474 TGAAACTACG
* * * *
4213484 TATATAATATATAGTTTTTAATA-GTTTT-TAAAAT-
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
*
4213518 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATATAATATATAGTTTT--AAAAACATTTTGGAAAATA
* *
4213557 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACT-
1 TATATAATATAT-AGTTTTAAAAACATTTTGGAAAA-TA
* * *
4213594 TATATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATA-ATATATAG-TTTTAAAAACATTTTGGAAAATA
* * *
4213633 TATAT-AT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
* * * * *
4213667 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAAATT
1 TATATAATATATAGTTTTAAAAACATTTT-GGAAAATA
* * * *
4213705 TATATAATCT-T--TTTTGAAAACATGTTGGAAAACA
1 TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
* *
4213739 TTCGTATATTATATAGTTTTAAAAA
1 -T-ATATAATATATAGTTTTAAAAA
4213764 AAAAAAAAAA
Statistics
Matches: 194, Mismatches: 32, Indels: 35
0.74 0.12 0.13
Matches are distributed among these distances:
34 34 0.18
35 29 0.15
36 32 0.16
37 23 0.12
38 38 0.20
39 33 0.17
40 5 0.03
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TATATAATATATAGTTTTAAAAACATTTTGGAAAATA
Found at i:4213585 original size:38 final size:37
Alignment explanation
Indices: 4213484--4213736 Score: 168
Period size: 34 Copynumber: 6.9 Consensus size: 37
4213474 TGAAACTACG
* * * *
4213484 TATATAATATATAGTTTTTAATA-GTTTT-TAAAAT-
1 TATATAATATATAATTTTTAAAACATTTTGGAAAATA
* * *
4213518 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATATAATATATAATTTT--TAAAACATTTTGGAAAATA
4213557 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACT-
1 TATATAATATATAATTTTTAAAA-CATTTTGGAAAA-TA
* * *
4213594 TATATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATA-ATATATAATTTTT-AAAACATTTTGGAAAATA
* * * *
4213633 TATAT-AT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATAATATATAATTTTTAAAACATTTTGGAAAATA
* * * * *
4213667 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAAATT
1 TATATAATATATAATTTTTAAAACATTTT-GGAAAATA
* * *
4213705 TATATAATCT-T--TTTTGAAAACATGTTGGAAAA
1 TATATAATATATAATTTTTAAAACATTTTGGAAAA
4213737 CATTCGTATA
Statistics
Matches: 179, Mismatches: 25, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
34 34 0.19
35 23 0.13
36 30 0.17
37 25 0.14
38 33 0.18
39 34 0.19
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TATATAATATATAATTTTTAAAACATTTTGGAAAATA
Found at i:4213626 original size:12 final size:12
Alignment explanation
Indices: 4213609--4213633 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4213599 ATATATATAG
4213609 TTTTTGAAAACA
1 TTTTTGAAAACA
4213621 TTTTTGAAAACA
1 TTTTTGAAAACA
4213633 T
1 T
4213634 ATATATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTTTTGAAAACA
Found at i:4213649 original size:35 final size:36
Alignment explanation
Indices: 4213518--4213763 Score: 187
Period size: 39 Copynumber: 6.6 Consensus size: 36
4213508 TTTTTAAAAT
* * *
4213518 TATATAATATATAGTTTTAAAAAAACATTTTAGAAAATA
1 TATAT-ATATATAGTTTT--GAAAACATTTTGGAAAACA
* *
4213557 TATATAATATATAATTTTTAAAATCA-TTTGGAAAACTTA
1 TATAT-ATATATAGTTTTGAAAA-CATTTTGGAAAAC--A
*
4213596 TATATATATATAGTTTTTGAAAACATTTTTGAAAACA
1 TATATATATATAG-TTTTGAAAACATTTTGGAAAACA
*
4213633 TATATAT-TATAGTTTTGAAAGCATTTT-GAAAACA
1 TATATATATATAGTTTTGAAAACATTTTGGAAAACA
* * * *
4213667 TTTTTATTATATAGTTTTTAAAACATTTTGGGAAA-A
1 TATATA-TATATAGTTTTGAAAACATTTTGGAAAACA
* ** *
4213703 TTTATATA-ATCTTTTTTGAAAACATGTTGGAAAACA
1 TATATATATAT-AGTTTTGAAAACATTTTGGAAAACA
* *
4213739 TTCGTATATTATATAGTTTTAAAAA
1 -T-ATATA-TATATAGTTTTGAAAA
4213764 AAAAAAAAAA
Statistics
Matches: 170, Mismatches: 23, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
34 13 0.08
35 35 0.21
36 30 0.18
37 25 0.15
38 15 0.09
39 50 0.29
40 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (36 bp):
TATATATATATAGTTTTGAAAACATTTTGGAAAACA
Found at i:4213707 original size:34 final size:34
Alignment explanation
Indices: 4213490--4213763 Score: 151
Period size: 36 Copynumber: 7.5 Consensus size: 34
4213480 TACGTATATA
* * * *
4213490 ATATATAGTTTTTAATA-GTTTT-TAAAATTATAT
1 ATATATAGTTTTTAAAACATTTTGGAAAA-TTTAT
* *
4213523 AATATATAGTTTTAAAAAAACATTTTAGAAAATATATAT
1 -ATATATAGTTTT--TAAAACATTTTGGAAAAT-T-TAT
*
4213562 AATATATAATTTTTAAAATCA-TTTGGAAAACTTATATAT
1 -ATATATAGTTTTTAAAA-CATTTTGGAAAA--T-T-TAT
* **
4213601 ATATATAGTTTTTGAAAACATTTTTGAAAACATAT
1 ATATATAGTTTTT-AAAACATTTTGGAAAATTTAT
* * * *
4213636 ATATTATAGTTTTGAAAGCATTTTGAAAACATTTTT
1 ATA-TATAGTTTTTAAAACATTTTGGAAA-ATTTAT
4213672 ATTATATAGTTTTTAAAACATTTTGGGAAAATTTAT
1 A-TATATAGTTTTTAAAACATTTT-GGAAAATTTAT
** *
4213708 ATA-ATCTTTTTTGAAAACATGTTGGAAAACATTCGTAT
1 ATATATAGTTTTT-AAAACATTTTGG-AAA-ATT--TAT
*
4213746 ATTATATAGTTTTAAAAA
1 A-TATATAGTTTTTAAAA
4213764 AAAAAAAAAA
Statistics
Matches: 189, Mismatches: 29, Indels: 39
0.74 0.11 0.15
Matches are distributed among these distances:
34 21 0.11
35 32 0.17
36 43 0.23
37 23 0.12
38 24 0.13
39 40 0.21
40 6 0.03
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (34 bp):
ATATATAGTTTTTAAAACATTTTGGAAAATTTAT
Found at i:4213709 original size:72 final size:72
Alignment explanation
Indices: 4213516--4213763 Score: 243
Period size: 72 Copynumber: 3.3 Consensus size: 72
4213506 AGTTTTTAAA
*
4213516 ATTATATAATATATAGTTTTAAAAAAACATTTTAGAAAATATATATAATATATAATTTTT-AAAA
1 ATTATATATTATATAGTTTT--AAAAACATTTTAGAAAATATATAT-AT-TAT-ATTTTTGAAAA
4213580 TCATTTGGAAAAC
61 -CATTTGGAAAAC
* * * * *
4213593 -TTATATATATATATAGTTTTTGAAAACATTTTTGAAAACATATATATTATAGTTTTGAAAGCAT
1 ATTATATAT-TATATAG-TTTTAAAAACATTTTAGAAAATATATATATTATATTTTTGAAAACAT
*
4213657 TTTGAAAAC
64 TTGGAAAAC
* * * * * *
4213666 ATT-TTTATTATATAGTTTTTAAAACATTTTGGGAAAATTTATATAATCT-TTTTTGAAAACATG
1 ATTATATATTATATAGTTTTAAAAACATTTT-AGAAAATATATATATTATATTTTTGAAAACAT-
4213729 TTGGAAAAC
64 TTGGAAAAC
*
4213738 ATTCGTATATTATATAGTTTTAAAAA
1 ATT-ATATATTATATAGTTTTAAAAA
4213764 AAAAAAAAAA
Statistics
Matches: 144, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
71 25 0.17
72 31 0.22
73 20 0.14
74 27 0.19
75 2 0.01
76 28 0.19
77 7 0.05
78 4 0.03
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (72 bp):
ATTATATATTATATAGTTTTAAAAACATTTTAGAAAATATATATATTATATTTTTGAAAACATTT
GGAAAAC
Found at i:4213834 original size:3 final size:3
Alignment explanation
Indices: 4213826--4213863 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
4213816 TGTATATATA
4213826 TAT TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T
4213864 TTTCATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4216769 original size:23 final size:23
Alignment explanation
Indices: 4216744--4216788 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
4216734 AAGTTTATTT
4216744 TTTTACTTTCA-TTTCTAGTAGA
1 TTTTACTTTCATTTTCTAGTAGA
4216766 TTTTACTTTCATTTTCTAGTAGA
1 TTTTACTTTCATTTTCTAGTAGA
4216789 GAAGTGATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56
Consensus pattern (23 bp):
TTTTACTTTCATTTTCTAGTAGA
Found at i:4219676 original size:155 final size:161
Alignment explanation
Indices: 4219492--4219808 Score: 574
Period size: 155 Copynumber: 2.0 Consensus size: 161
4219482 ATTTGTGTCT
4219492 AAAGGATTTAATCCCAAATTCATTTTTTGTTCTTTTAGTATAAATCGTTCATGAAGGCTTCAATC
1 AAAGGATTTAATCCCAAATTCATTTTTTGTTCTTTTAGTATAAATCGTTCATGAAGGCTTCAATC
4219557 CAAAC-TTATTAGCTGGAGACTAGTAC-TTTTTT-AATATATATATTTC-CG-GACTAGTATCAT
66 CAAACTTTATTAGCTGGAGACTAGTACTTTTTTTAAATATATATATTTCACGAGACTAGTATCAT
4219617 TGCACC-AATAACTATTCCTTTGTGGTCCTC
131 TGCACCAAATAACTATTCCTTTGTGGTCCTC
4219647 AAAGGATTTAATCCCAAATTCATTTTTTGTTCTTTTAGTATAAATCGTTCATGAAGGCTTCAATC
1 AAAGGATTTAATCCCAAATTCATTTTTTGTTCTTTTAGTATAAATCGTTCATGAAGGCTTCAATC
*
4219712 CAAACTTTATTAGCTGGAGACTAGTACTTTTTTTAAAATATATATATTTCAGGAGACTAGTATCA
66 CAAACTTTATTAGCTGGAGACTAGTACTTTTTTT-AAATATATATATTTCACGAGACTAGTATCA
4219777 TTGCACCAAATAACTATTCCTTTGTGGTCCTC
130 TTGCACCAAATAACTATTCCTTTGTGGTCCTC
4219809 TTCTTGGTGG
Statistics
Matches: 154, Mismatches: 1, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
155 70 0.45
156 21 0.14
157 6 0.04
159 14 0.09
160 1 0.01
161 18 0.12
162 24 0.16
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (161 bp):
AAAGGATTTAATCCCAAATTCATTTTTTGTTCTTTTAGTATAAATCGTTCATGAAGGCTTCAATC
CAAACTTTATTAGCTGGAGACTAGTACTTTTTTTAAATATATATATTTCACGAGACTAGTATCAT
TGCACCAAATAACTATTCCTTTGTGGTCCTC
Found at i:4220857 original size:56 final size:57
Alignment explanation
Indices: 4220769--4220884 Score: 198
Period size: 56 Copynumber: 2.1 Consensus size: 57
4220759 AAACCTATCA
* *
4220769 TTGATCTAATTTATTTTGAACCTTCTTTTGTTGAAGTATGATTGTTTATTACTAAAC
1 TTGATCTAATTTATTTTGAACCTTCTTGTGTTGAAATATGATTGTTTATTACTAAAC
*
4220826 TTGATCTAATTT-TTTTGAACCTTCTTGTGTTGAAATATTATTGTTTATTACTAAAC
1 TTGATCTAATTTATTTTGAACCTTCTTGTGTTGAAATATGATTGTTTATTACTAAAC
4220882 TTG
1 TTG
4220885 TGTAATTGAC
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 44 0.79
57 12 0.21
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (57 bp):
TTGATCTAATTTATTTTGAACCTTCTTGTGTTGAAATATGATTGTTTATTACTAAAC
Found at i:4225942 original size:26 final size:26
Alignment explanation
Indices: 4225906--4226041 Score: 95
Period size: 26 Copynumber: 5.3 Consensus size: 26
4225896 TTTTTTCTTT
*
4225906 AACA-TAATCGAACCGAAATTATTTG
1 AACATTAATCGAACCAAAATTATTTG
* *
4225931 ACCGTTAATCGAACC-AAA--ATTTG
1 AACATTAATCGAACCAAAATTATTTG
* * * * *
4225954 AAAATT-AT-TAACCGAATATTTTTCTTT
1 AACATTAATCGAACC-AA-AATTAT-TTG
4225981 AACCATTAATCGAACCAAAATTATTTG
1 AA-CATTAATCGAACCAAAATTATTTG
*
4226008 AACGTTAATCGAACCAAAATTTATTTG
1 AACATTAATCGAACCAAAA-TTATTTG
*
4226035 AAAATTA
1 AACATTA
4226042 TTAACCGAAT
Statistics
Matches: 83, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
21 4 0.05
22 2 0.02
23 9 0.11
24 1 0.01
25 5 0.06
26 27 0.33
27 20 0.24
28 7 0.08
29 4 0.05
30 4 0.05
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (26 bp):
AACATTAATCGAACCAAAATTATTTG
Found at i:4226014 original size:77 final size:77
Alignment explanation
Indices: 4225885--4226052 Score: 259
Period size: 77 Copynumber: 2.2 Consensus size: 77
4225875 AACGAACCAA
* * *
4225885 ATTAACCGAATTTTTTTCTTTAACATAATCGAACCGAAATTATTTGACCGTTAATCGAACC-AAA
1 ATTAACCGAATATTTTTCTTTAACATAATCGAACCAAAATTATTTGAACGTTAATCGAACCAAAA
4225949 -ATTTGAAAATT
66 TATTTGAAAATT
4225960 ATTAACCGAATATTTTTCTTTAACCATTAATCGAACCAAAATTATTTGAACGTTAATCGAACCAA
1 ATTAACCGAATATTTTTCTTTAA-CA-TAATCGAACCAAAATTATTTGAACGTTAATCGAACCAA
4226025 AATTTATTTGAAAATT
64 AA--TATTTGAAAATT
4226041 ATTAACCGAATA
1 ATTAACCGAATA
4226053 AAATAAATTA
Statistics
Matches: 84, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
75 22 0.26
76 2 0.02
77 34 0.40
78 3 0.04
81 23 0.27
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.36
Consensus pattern (77 bp):
ATTAACCGAATATTTTTCTTTAACATAATCGAACCAAAATTATTTGAACGTTAATCGAACCAAAA
TATTTGAAAATT
Found at i:4226115 original size:66 final size:65
Alignment explanation
Indices: 4226010--4226242 Score: 254
Period size: 65 Copynumber: 3.6 Consensus size: 65
4226000 ATTATTTGAA
*
4226010 CGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAATAAAATAAATTATTTTTCTTTAAC
1 CGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAATAAAATAAATTATTTTTCTTTAAC
**
4226075 CGTTAATCGAACCGAAATTTAATTTGAAAATTATTAACCGAACCAAATCAACCGATT-TTTTTCT
1 CGTTAATCGAACCGAAATTT-ATTTGAAAATTATTAACCGAATAAAAT-AA---ATTATTTTTCT
4226139 TTAAC
61 TTAAC
* * *
4226144 C-TT-A--GAATCGAAATTTATTTG-AAATTATT-ACC-AAAATAAATAAATTATTTTTTCCTTA
1 CGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAATA-AAATAAATTA-TTTTTCTTTA
4226202 AC
64 AC
* *
4226204 CG-TAATCGATCCG-AATTTATTTAAAAATTATTAA-CGAAT
1 CGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAAT
4226243 TTTTTCTTTA
Statistics
Matches: 142, Mismatches: 11, Indels: 31
0.77 0.06 0.17
Matches are distributed among these distances:
58 3 0.02
60 13 0.09
61 5 0.04
62 16 0.11
63 21 0.15
64 8 0.06
65 30 0.21
66 25 0.18
67 3 0.02
68 2 0.01
69 13 0.09
70 3 0.02
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (65 bp):
CGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAATAAAATAAATTATTTTTCTTTAAC
Found at i:4231030 original size:38 final size:38
Alignment explanation
Indices: 4230954--4231029 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
4230944 ATATTATATG
* *
4230954 TAAATTTCGGTTAATCGATAGAATTAATTGATTATTTT
1 TAAATTTCGGTTAATCGATAGAATTAATTAAATATTTT
*
4230992 TAAATTTCGGTTAATCGATCGAATTAATTAAA-ATTTT
1 TAAATTTCGGTTAATCGATAGAATTAATTAAATATTTT
4231029 T
1 T
4231030 TCGTTTCAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 6 0.17
38 29 0.83
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.46
Consensus pattern (38 bp):
TAAATTTCGGTTAATCGATAGAATTAATTAAATATTTT
Found at i:4232547 original size:55 final size:57
Alignment explanation
Indices: 4232450--4232558 Score: 143
Period size: 55 Copynumber: 1.9 Consensus size: 57
4232440 AACGTAGTTA
* * *
4232450 AAAGCCTAATTATCGATTTAGGTAATCGTTGTACTTAAGAAATTTAGGTAATCGCATG
1 AAAGCCTAATTACCGATATAGGTAATC-TTGTACTTAAGAAATTTAGATAATCGCATG
*
4232508 AAAGCC-AATTACCGATATAGGTATAT-TT-TACTTAGGAAATTTAGATAATCG
1 AAAGCCTAATTACCGATATAGGTA-ATCTTGTACTTAAGAAATTTAGATAATCG
4232559 TTGTTCGGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 21 0.46
56 2 0.04
57 15 0.33
58 8 0.17
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (57 bp):
AAAGCCTAATTACCGATATAGGTAATCTTGTACTTAAGAAATTTAGATAATCGCATG
Found at i:4234841 original size:31 final size:30
Alignment explanation
Indices: 4234773--4234841 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
4234763 AATGATAAAT
*
4234773 TGGTCACTAACGTTATCGATTTATAACAAA
1 TGGTCACTAACATTATCGATTTATAACAAA
*
4234803 TGCTCACTAACATTATCGATTTATAACAAAA
1 TGGTCACTAACATTATCGATTTATAAC-AAA
4234834 TGGTCACT
1 TGGTCACT
4234842 CTACCATCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 25 0.71
31 10 0.29
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (30 bp):
TGGTCACTAACATTATCGATTTATAACAAA
Found at i:4236064 original size:169 final size:165
Alignment explanation
Indices: 4235785--4236115 Score: 583
Period size: 169 Copynumber: 2.0 Consensus size: 165
4235775 TTATCTCTTT
*
4235785 ATTAGCCCATGGTACACTGGTGAGAACTGAAGGTATGTGAGTACTGTGAGGTTGTGCACTATGCT
1 ATTAGCCCATGGTACACTGGTGAGAACTGAAGGTATGTGAGTACTGTGAGGTTGTGCAATATGCT
*
4235850 GTCACCACAGCTCGTATAAATTTGCACCGAAGTGCCACGTAGAATTTGTCCCG-AGGACCGCGTA
66 ATCACCACAGCTCGTATAAATTTGCACCGAAGTGCCACGTAGAATTTGTCCCGAAGGA-CGCGTA
*
4235914 GAAATGCACCGTATTGCCATATAAGATTGGTCCATAAGGA
130 GAAATGC-CCGTAGTGCC--ATAAGATT-GTCCATAAGGA
4235954 ATTAGCCCATGGTACACTGGTGAGAACTGAAGGTATGTGAGTACTGTGAGGTTGTGCAATATGCT
1 ATTAGCCCATGGTACACTGGTGAGAACTGAAGGTATGTGAGTACTGTGAGGTTGTGCAATATGCT
4236019 ATCACCACAGCTCGTATAAATTTGCACCGAAGTGCCACGTAGAATTTGTCCCGAAGGACGCGTAG
66 ATCACCACAGCTCGTATAAATTTGCACCGAAGTGCCACGTAGAATTTGTCCCGAAGGACGCGTAG
4236084 AAATGCCCGTAGTGCCATAAGATTGTCCATAA
131 AAATGCCCGTAGTGCCATAAGATTGTCCATAA
4236116 AGACCACATA
Statistics
Matches: 158, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
165 8 0.05
166 8 0.05
168 9 0.06
169 129 0.82
170 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (165 bp):
ATTAGCCCATGGTACACTGGTGAGAACTGAAGGTATGTGAGTACTGTGAGGTTGTGCAATATGCT
ATCACCACAGCTCGTATAAATTTGCACCGAAGTGCCACGTAGAATTTGTCCCGAAGGACGCGTAG
AAATGCCCGTAGTGCCATAAGATTGTCCATAAGGA
Found at i:4237076 original size:18 final size:19
Alignment explanation
Indices: 4237038--4237076 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
4237028 TCAAATATCT
4237038 ATGCATCGATGCACCCCTTA
1 ATGCATCGATGCA-CCCTTA
4237058 ATGCATCGATGCA-CCTTA
1 ATGCATCGATGCACCCTTA
4237076 A
1 A
4237077 AAATTGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
20 13 0.68
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (19 bp):
ATGCATCGATGCACCCTTA
Found at i:4240845 original size:65 final size:65
Alignment explanation
Indices: 4240774--4240903 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
4240764 AGAAATGGAA
4240774 ACTTTCTAATATTATATTTCTATCATTTAATCAAATTTCCATAACAATGGAACATTTCTCAAATT
1 ACTTTCTAATATTATATTTCTATCATTTAATCAAATTTCCATAACAATGGAACATTTCTCAAATT
4240839 ACTTTCTAATATTATATTTCTATCATTTAATCAAATTTCCATAACAATGGAACATTTCTCAAATT
1 ACTTTCTAATATTATATTTCTATCATTTAATCAAATTTCCATAACAATGGAACATTTCTCAAATT
4240904 CACCCTTGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (65 bp):
ACTTTCTAATATTATATTTCTATCATTTAATCAAATTTCCATAACAATGGAACATTTCTCAAATT
Found at i:4241518 original size:21 final size:20
Alignment explanation
Indices: 4241476--4241526 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
4241466 ATATACGTTT
**
4241476 TATGAACAGT-AAAATATGA
1 TATGAACAGTGAAAATACCA
4241495 TATGAACAGTGAACAATACCA
1 TATGAACAGTGAA-AATACCA
4241516 TATGAACAGTG
1 TATGAACAGTG
4241527 CCCGAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.36
20 2 0.07
21 16 0.57
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (20 bp):
TATGAACAGTGAAAATACCA
Found at i:4242370 original size:24 final size:24
Alignment explanation
Indices: 4242343--4242408 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
4242333 AGCTCGTATA
4242343 AATTTGCACCGAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
*
4242367 AATTTGTC-CCGAAG-GACCGCGTAG
1 AATTTG-CACCGAAGTG-CCACGTAG
* *
4242391 AA-ATGCACCGTAGTGCCA
1 AATTTGCACCGAAGTGCCA
4242409 TATAAGATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
22 1 0.03
23 10 0.29
24 22 0.65
25 1 0.03
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.20
Consensus pattern (24 bp):
AATTTGCACCGAAGTGCCACGTAG
Found at i:4245090 original size:10 final size:10
Alignment explanation
Indices: 4245075--4245113 Score: 78
Period size: 10 Copynumber: 3.9 Consensus size: 10
4245065 AGTTTTCCTT
4245075 TCTTCCTTCA
1 TCTTCCTTCA
4245085 TCTTCCTTCA
1 TCTTCCTTCA
4245095 TCTTCCTTCA
1 TCTTCCTTCA
4245105 TCTTCCTTC
1 TCTTCCTTC
4245114 TCCAAACGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.08, C:0.41, G:0.00, T:0.51
Consensus pattern (10 bp):
TCTTCCTTCA
Found at i:4250846 original size:5 final size:5
Alignment explanation
Indices: 4250836--4250862 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4250826 CGCCGCCGTC
4250836 CGGCT CGGCT CGGCT CGGCT CGGCT CG
1 CGGCT CGGCT CGGCT CGGCT CGGCT CG
4250863 TGGTCGTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.41, T:0.19
Consensus pattern (5 bp):
CGGCT
Found at i:4250871 original size:6 final size:6
Alignment explanation
Indices: 4250860--4250884 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4250850 TCGGCTCGGC
4250860 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
4250885 AATACGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:4256776 original size:6 final size:6
Alignment explanation
Indices: 4256765--4256789 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4256755 TAGGCTCGGC
4256765 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
4256790 AATACGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:4264277 original size:2 final size:2
Alignment explanation
Indices: 4264270--4264322 Score: 90
Period size: 2 Copynumber: 26.5 Consensus size: 2
4264260 CATTGAAAAT
4264270 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4264312 TA -A TA CTA TA T
1 TA TA TA -TA TA T
4264323 TTTATGTTTC
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 1 0.02
2 46 0.94
3 2 0.04
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:4265043 original size:34 final size:32
Alignment explanation
Indices: 4264992--4265060 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 32
4264982 CTTACAAACA
* * *
4264992 CCCTAGTTTTTCCGGGCTAAACTATAACTTTT
1 CCCTAGTTTTACCGGGCTAAACTAGAACCTTT
*
4265024 CCCTAGCTTTTACACGGGCTAAGCTAGAACCTTT
1 CCCTAG-TTTTAC-CGGGCTAAACTAGAACCTTT
4265058 CCC
1 CCC
4265061 CTTTACAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 6 0.19
33 5 0.16
34 20 0.65
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.33
Consensus pattern (32 bp):
CCCTAGTTTTACCGGGCTAAACTAGAACCTTT
Found at i:4265370 original size:21 final size:21
Alignment explanation
Indices: 4265344--4265385 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
4265334 CCAAAATGGG
*
4265344 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
4265365 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
4265386 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:4265501 original size:29 final size:31
Alignment explanation
Indices: 4265469--4265528 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
4265459 AAATTTTGAA
*
4265469 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
4265498 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
4265529 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:4268885 original size:65 final size:64
Alignment explanation
Indices: 4268752--4268961 Score: 201
Period size: 65 Copynumber: 3.2 Consensus size: 64
4268742 TGCACTAAGA
* * *
4268752 GTGCATCGATGCATCAAGTGTATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
* * *
4268816 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGTATCGATGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATGGCT
*
4268879 AT
64 -G
* * ** ** ** *
4268881 GTGCATCGATGCATGAAATGCATTCGACG-TTCAATTTAATTCATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAAT-AGCCACAGTGCATCGATGCATGG-CT
4268945 G
64 G
*
4268946 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
4268962 CTCTGAAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 46 0.38
65 65 0.54
66 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
Found at i:4280980 original size:11 final size:12
Alignment explanation
Indices: 4280954--4281000 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
4280944 AAAATAAAGA
4280954 AAAAAATTAATTT
1 AAAAAATTAA-TT
4280967 AAAAAATTAA-T
1 AAAAAATTAATT
4280978 AAAAAATTAAAGTT
1 AAAAAATT-AA-TT
4280992 AAAAAATTA
1 AAAAAATTA
4281001 CCTTCCAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 9 0.29
12 2 0.06
13 11 0.35
14 9 0.29
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (12 bp):
AAAAAATTAATT
Found at i:4280981 original size:24 final size:25
Alignment explanation
Indices: 4280954--4281000 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
4280944 AAAATAAAGA
*
4280954 AAAAAATT-AATTTAAAAAATTAAT
1 AAAAAATTAAAGTTAAAAAATTAAT
4280978 AAAAAATTAAAGTTAAAAAATTA
1 AAAAAATTAAAGTTAAAAAATTA
4281001 CCTTCCAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAAAATTAAAGTTAAAAAATTAAT
Found at i:4280981 original size:25 final size:25
Alignment explanation
Indices: 4280943--4281000 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
4280933 AAAGAAAAAT
* *
4280943 AAAAATAAAGAAAAAAATT-AATTTA
1 AAAAATTAAG-AAAAAATTAAAGTTA
*
4280968 AAAAATTAATAAAAAATTAAAGTTA
1 AAAAATTAAGAAAAAATTAAAGTTA
4280993 AAAAATTA
1 AAAAATTA
4281001 CCTTCCAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (25 bp):
AAAAATTAAGAAAAAATTAAAGTTA
Found at i:4283682 original size:21 final size:21
Alignment explanation
Indices: 4283658--4283700 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
4283648 TAATTTGATG
4283658 ATACCTTTTTCCTGCATTTTT
1 ATACCTTTTTCCTGCATTTTT
*
4283679 ATACCTTTTTCTTGCATTTTT
1 ATACCTTTTTCCTGCATTTTT
4283700 A
1 A
4283701 ACATTTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.21, G:0.05, T:0.58
Consensus pattern (21 bp):
ATACCTTTTTCCTGCATTTTT
Found at i:4289679 original size:13 final size:13
Alignment explanation
Indices: 4289661--4289686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4289651 TAAGGAGTAA
4289661 AGCAGGAAACGGG
1 AGCAGGAAACGGG
4289674 AGCAGGAAACGGG
1 AGCAGGAAACGGG
4289687 GTGATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.46, T:0.00
Consensus pattern (13 bp):
AGCAGGAAACGGG
Found at i:4292586 original size:13 final size:13
Alignment explanation
Indices: 4292568--4292592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4292558 ATAAATTCTA
4292568 ATATATATATATT
1 ATATATATATATT
4292581 ATATATATATAT
1 ATATATATATAT
4292593 ATTATTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATATATATT
Found at i:4292588 original size:15 final size:15
Alignment explanation
Indices: 4292568--4292597 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4292558 ATAAATTCTA
4292568 ATATATATATATTAT
1 ATATATATATATTAT
4292583 ATATATATATATTAT
1 ATATATATATATTAT
4292598 TTTTTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATATATATATTAT
Found at i:4294771 original size:93 final size:93
Alignment explanation
Indices: 4294612--4294798 Score: 374
Period size: 93 Copynumber: 2.0 Consensus size: 93
4294602 GATTTTAGAA
4294612 TACCAAATTCAAATTCGACACATTCATTCAAACAAATGAGCAAGAATGTAAAGGTTTGCTCGTCT
1 TACCAAATTCAAATTCGACACATTCATTCAAACAAATGAGCAAGAATGTAAAGGTTTGCTCGTCT
4294677 AAACTCAAATCTCACAAGAAAATTCATT
66 AAACTCAAATCTCACAAGAAAATTCATT
4294705 TACCAAATTCAAATTCGACACATTCATTCAAACAAATGAGCAAGAATGTAAAGGTTTGCTCGTCT
1 TACCAAATTCAAATTCGACACATTCATTCAAACAAATGAGCAAGAATGTAAAGGTTTGCTCGTCT
4294770 AAACTCAAATCTCACAAGAAAATTCATT
66 AAACTCAAATCTCACAAGAAAATTCATT
4294798 T
1 T
4294799 GTATCGAGTC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 94 1.00
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (93 bp):
TACCAAATTCAAATTCGACACATTCATTCAAACAAATGAGCAAGAATGTAAAGGTTTGCTCGTCT
AAACTCAAATCTCACAAGAAAATTCATT
Found at i:4304986 original size:24 final size:24
Alignment explanation
Indices: 4304927--4305002 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 24
4304917 AATTTTGTTA
* **
4304927 TGATACTTGACATGGATTCTGAAC
1 TGATACTTGACCTGGATTCTGATT
4304951 TGATACTTGACCTGGATTCTGATT
1 TGATACTTGACCTGGATTCTGATT
* * *
4304975 TGATACTTGACCTGAATTATGTTT
1 TGATACTTGACCTGGATTCTGATT
4304999 TGAT
1 TGAT
4305003 TTTTTATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (24 bp):
TGATACTTGACCTGGATTCTGATT
Found at i:4309518 original size:24 final size:24
Alignment explanation
Indices: 4309491--4309574 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
4309481 TATCTGATTT
*
4309491 TTGACATGAATTCTGTTA-TGATAC
1 TTGACATGAATTCTG-AACTGATAC
*
4309515 TTGACATGGATTCTGAACTGATAC
1 TTGACATGAATTCTGAACTGATAC
* * * *
4309539 TTGACCTGGATTCTGGATTGATAC
1 TTGACATGAATTCTGAACTGATAC
*
4309563 TTGACCTGAATT
1 TTGACATGAATT
4309575 ATGATTTGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 1 0.02
24 52 0.98
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.38
Consensus pattern (24 bp):
TTGACATGAATTCTGAACTGATAC
Found at i:4311573 original size:2 final size:2
Alignment explanation
Indices: 4311566--4311590 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4311556 TAATTTCATG
4311566 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4311591 TAAATAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4313130 original size:59 final size:57
Alignment explanation
Indices: 4313021--4313132 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 57
4313011 AAAAATAAAA
4313021 CTTATTTTGACAAAAACATAGTACATACTTACACCGATATAAGTTAATAAAATTTCC
1 CTTATTTTGACAAAAACATAGTACATACTTACACCGATATAAGTTAATAAAATTTCC
* * *
4313078 CTTATTTTGACAAAAACATA-TAACACATACTTACACTGGTGTAAGTTAATAAAAT
1 CTTATTTTGACAAAAACATAGT---ACATACTTACACCGATATAAGTTAATAAAAT
4313133 AAAAAGTGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
56 1 0.02
57 20 0.41
59 28 0.57
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (57 bp):
CTTATTTTGACAAAAACATAGTACATACTTACACCGATATAAGTTAATAAAATTTCC
Found at i:4313303 original size:29 final size:29
Alignment explanation
Indices: 4313270--4313326 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
4313260 TTAACGGCAG
* *
4313270 AAAACACCATGTATGAAATTGATAATTTT
1 AAAACACCATGTATGAAACTAATAATTTT
**
4313299 AAAACATTATGTATGAAACTAATAATTT
1 AAAACACCATGTATGAAACTAATAATTT
4313327 GATTTACTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (29 bp):
AAAACACCATGTATGAAACTAATAATTTT
Found at i:4314308 original size:2 final size:2
Alignment explanation
Indices: 4314230--4314290 Score: 101
Period size: 2 Copynumber: 32.0 Consensus size: 2
4314220 AGATGGAGTG
4314230 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4314271 A- AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
4314291 TAAAAAAATA
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
1 3 0.05
2 53 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4314309 original size:33 final size:36
Alignment explanation
Indices: 4314230--4314314 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 36
4314220 AGATGGAGTG
* *
4314230 ATATATATATATATATATATATATATAATAT--ATAT
1 ATATATATATAT-TATATATATATATAATATAAAAAA
4314265 ATATATA-ATATTATATATATATAT-AT-TAAAAAA
1 ATATATATATATTATATATATATATAATATAAAAAA
4314298 ATA-ATATATATTATATA
1 ATATATATATATTATATA
4314315 ACATGTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
31 1 0.02
32 5 0.11
33 28 0.62
34 4 0.09
35 7 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (36 bp):
ATATATATATATTATATATATATATAATATAAAAAA
Found at i:4332185 original size:24 final size:24
Alignment explanation
Indices: 4332165--4332283 Score: 139
Period size: 24 Copynumber: 5.0 Consensus size: 24
4332155 AAAATCAAAA
* *
4332165 CATAATTCAGGTCAAGTATCATAT
1 CATAATCCATGTCAAGTATCATAT
*
4332189 CATAATCCATGTCAATTATCATAT
1 CATAATCCATGTCAAGTATCATAT
*
4332213 CAGAATCCATGTCAAGTATCATAT
1 CATAATCCATGTCAAGTATCATAT
* * * *
4332237 CAGAGTCCATGTCAAGTGTCAAAT
1 CATAATCCATGTCAAGTATCATAT
* * *
4332261 CAGAATCTAGGTCAAGTATCATA
1 CATAATCCATGTCAAGTATCATA
4332284 GCAAATTTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (24 bp):
CATAATCCATGTCAAGTATCATAT
Found at i:4332246 original size:48 final size:48
Alignment explanation
Indices: 4332158--4332283 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 48
4332148 TATATCAAAA
* * * * *
4332158 ATCAAAACATAATTCAGGTCAAGTATCATATCATAATCCATGTCAATT
1 ATCAAATCAGAATCCAGGTCAAGTATCATATCAGAATCCATGTCAAGT
* * *
4332206 ATCATATCAGAATCCATGTCAAGTATCATATCAGAGTCCATGTCAAGT
1 ATCAAATCAGAATCCAGGTCAAGTATCATATCAGAATCCATGTCAAGT
* *
4332254 GTCAAATCAGAATCTAGGTCAAGTATCATA
1 ATCAAATCAGAATCCAGGTCAAGTATCATA
4332284 GCAAATTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (48 bp):
ATCAAATCAGAATCCAGGTCAAGTATCATATCAGAATCCATGTCAAGT
Found at i:4334725 original size:13 final size:13
Alignment explanation
Indices: 4334706--4334744 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
4334696 GTTAACGTGT
4334706 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
* *
4334719 TGGGTCGGGTTAA
1 CGGGTCGGGTCAA
4334732 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
4334745 ACTGCCCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.15, C:0.18, G:0.46, T:0.21
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:4336548 original size:24 final size:24
Alignment explanation
Indices: 4336521--4336569 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
4336511 AGTGCCCAAA
*
4336521 TTGCTAGATAATGATTGAACAATT
1 TTGCCAGATAATGATTGAACAATT
4336545 TTGCCAGATAATGATTGAACAATT
1 TTGCCAGATAATGATTGAACAATT
4336569 T
1 T
4336570 GAACTTGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (24 bp):
TTGCCAGATAATGATTGAACAATT
Found at i:4349141 original size:14 final size:14
Alignment explanation
Indices: 4349122--4349152 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
4349112 GTGGATGAAT
4349122 TTGCATTGAGTTTG
1 TTGCATTGAGTTTG
4349136 TTGCATTGAGTTTG
1 TTGCATTGAGTTTG
4349150 TTG
1 TTG
4349153 TATTTGGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.06, G:0.29, T:0.52
Consensus pattern (14 bp):
TTGCATTGAGTTTG
Found at i:4349259 original size:16 final size:16
Alignment explanation
Indices: 4349235--4349275 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
4349225 GTTTTCTTGA
*
4349235 GTTGTGTTTGGTCATT
1 GTTGTGTTTGGTAATT
*
4349251 GTTGGGTTTGGTAATT
1 GTTGTGTTTGGTAATT
4349267 GTTGTGTTT
1 GTTGTGTTT
4349276 CTGTAGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.07, C:0.02, G:0.34, T:0.56
Consensus pattern (16 bp):
GTTGTGTTTGGTAATT
Found at i:4350378 original size:23 final size:24
Alignment explanation
Indices: 4350318--4350379 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
4350308 TTATTCAAAT
* *
4350318 TATAATTATGAAAAAAAATAATTTA
1 TATATTTA-GAAATAAAATAATTTA
*
4350343 TATATTTATAAATAAAAT-ATTTA
1 TATATTTAGAAATAAAATAATTTA
*
4350366 TTTATTTAGAAATA
1 TATATTTAGAAATA
4350380 TCAGAAAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 17 0.53
24 8 0.25
25 7 0.22
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (24 bp):
TATATTTAGAAATAAAATAATTTA
Found at i:4352004 original size:40 final size:40
Alignment explanation
Indices: 4351949--4352051 Score: 181
Period size: 40 Copynumber: 2.6 Consensus size: 40
4351939 TTGAATAAGC
*
4351949 TCTTCTCATTATGAAC-TTCTTCTTTCTTTTTTAGATGAGT
1 TCTTCTCATTATGAACTTTC-TCTTTCTTTTTCAGATGAGT
4351989 TCTTCTCATTATGAACTTTCTCTTTCTTTTTCAGATGAGT
1 TCTTCTCATTATGAACTTTCTCTTTCTTTTTCAGATGAGT
4352029 TCTTCTCATTATGAACTTTCTCT
1 TCTTCTCATTATGAACTTTCTCT
4352052 AGAAAGGTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
40 58 0.95
41 3 0.05
ACGTcount: A:0.17, C:0.20, G:0.09, T:0.53
Consensus pattern (40 bp):
TCTTCTCATTATGAACTTTCTCTTTCTTTTTCAGATGAGT
Found at i:4352130 original size:164 final size:163
Alignment explanation
Indices: 4351845--4352172 Score: 428
Period size: 164 Copynumber: 2.0 Consensus size: 163
4351835 TTGAACAAAT
* * *
4351845 TCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGGGGATGATGTTGACCTAT
1 TCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGAGGATGATGCTAACCTAT
* * * * *
4351910 TTCCTTTTGTGATAGAGTCATTCAAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTTC
66 CTCCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTC-TTC
* * * *
4351975 TTTTTTAGATGAGTTCTTCTCATTATGAACTTTC
130 CTCTTCAGATAAGTTCTTCTCATTATGAACTTTC
* * *
4352009 TCTT-TCTTT-TTCAGATGAGTTCTTCTCATTATGAACTTT-CTCTAGAAAGGTTGATGCTAATC
1 TCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCCACT-G--AGGATGATGCTAACC
* * * *
4352071 TATCTGCTTCTGTGATAGAATTATGCAAAAGGTTGAACAAGCTCTTTTCATTGTGAACTTCTTCT
63 TATCTCCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCT
4352136 TCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTC
128 TCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTC
4352172 T
1 T
4352173 GGAAATGTTG
Statistics
Matches: 142, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
161 3 0.02
162 31 0.22
163 39 0.27
164 69 0.49
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (163 bp):
TCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGAGGATGATGCTAACCTAT
CTCCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC
TCTTCAGATAAGTTCTTCTCATTATGAACTTTC
Found at i:4352753 original size:113 final size:113
Alignment explanation
Indices: 4352205--4352759 Score: 799
Period size: 113 Copynumber: 4.9 Consensus size: 113
4352195 AACTAAAGTC
* *
4352205 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCGTTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * * * * * *
4352270 -TTCTCTGGAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAAGTT
66 CTT-TCTGGTACTGTTGATCCATTGAATGATGGATTTAAGCAAAAGGTT
* *
4352318 AAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
*** * * * * * *
4352383 CGCCCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAA-GTT
66 CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAAGC-AAAAGGTT
*
4352431 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTTCTCATTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
** * *
4352496 CTAACTGGTACTGTTGATCCATTAAATGATGGATTTGAGCAAAAGGTT
66 CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAAGCAAAAGGTT
* *
4352544 GAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
* *
4352609 CTTTCTGGTACTGTTGATCCATTAAATGATGGATTTGAGCAAAAGGTT
66 CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAAGCAAAAGGTT
* *
4352657 GAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACT
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
4352722 CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAA
66 CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAA
4352760 ATCTTTGCTA
Statistics
Matches: 408, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
112 4 0.01
113 400 0.98
114 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (113 bp):
GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
CTTTCTGGTACTGTTGATCCATTGAATGATGGATTTAAGCAAAAGGTT
Found at i:4353239 original size:22 final size:22
Alignment explanation
Indices: 4353160--4353236 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
4353150 TATAAAGCTT
4353160 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
4353182 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTGAAAAGAGAATCTA
*
4353204 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
4353226 TCATCTTTGAA
1 TCATCTTTGAA
4353237 GAGTGTAGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:4358160 original size:18 final size:18
Alignment explanation
Indices: 4358137--4358195 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
4358127 ATTCAATTTT
4358137 TTTTTTCTATTTCTTTCC
1 TTTTTTCTATTTCTTTCC
* *
4358155 TTTTTTTTCTTTCTTTCTC
1 TTTTTTCTATTTCTTTC-C
* *
4358174 TTTTTTCTTTTTTCTTTTC
1 TTTTTTC-TATTTCTTTCC
4358193 TTT
1 TTT
4358196 GCTGGATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 15 0.44
19 11 0.32
20 8 0.24
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTTCTATTTCTTTCC
Found at i:4358160 original size:19 final size:19
Alignment explanation
Indices: 4358136--4358195 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
4358126 GATTCAATTT
4358136 TTTTTTTCTATTTCTTTC-C
1 TTTTTTT-TATTTCTTTCTC
*
4358155 TTTTTTTTCTTTCTTTCTC
1 TTTTTTTTATTTCTTTCTC
*
4358174 TTTTTTCTTTTTTCTTT-TC
1 TTTTTT-TTATTTCTTTCTC
4358193 TTT
1 TTT
4358196 GCTGGATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.24
19 19 0.51
20 9 0.24
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTTATTTCTTTCTC
Found at i:4358160 original size:20 final size:19
Alignment explanation
Indices: 4358135--4358195 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
4358125 TGATTCAATT
4358135 TTTTTTTTCTATTTCTTTC-C
1 TTTTTTTTC--TTTCTTTCTC
4358155 TTTTTTTTCTTTCTTTCTC
1 TTTTTTTTCTTTCTTTCTC
*
4358174 TTTTTTCTTTTTTCTTT-TC
1 TTTTTT-TTCTTTCTTTCTC
4358193 TTT
1 TTT
4358196 GCTGGATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
18 8 0.21
19 12 0.32
20 18 0.47
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTTCTTTCTTTCTC
Found at i:4358167 original size:24 final size:23
Alignment explanation
Indices: 4358133--4358195 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
4358123 CTTGATTCAA
4358133 TTTTTTT-TTTCTATT-TCTTTCCT
1 TTTTTTTCTTTCT-TTCTCTTT-CT
*
4358156 TTTTTTTCTTTCTTTCTCTTTTT
1 TTTTTTTCTTTCTTTCTCTTTCT
4358179 TCTTTTTTCTTTTCTTT
1 T-TTTTTTC-TTTCTTT
4358196 GCTGGATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
23 11 0.31
24 17 0.49
25 7 0.20
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTCTTTCTTTCTCTTTCT
Found at i:4358180 original size:9 final size:9
Alignment explanation
Indices: 4358137--4358186 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
4358127 ATTCAATTTT
*
4358137 TTTTTTCTA
1 TTTTTTCTC
4358146 TTTCTTTC-C
1 TTT-TTTCTC
*
4358155 TTTTTTTTC
1 TTTTTTCTC
4358164 TTTCTTTCTC
1 TTT-TTTCTC
4358174 TTTTTTCT-
1 TTTTTTCTC
4358182 TTTTT
1 TTTTT
4358187 CTTTTCTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
8 8 0.23
9 15 0.43
10 12 0.34
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTCTC
Found at i:4358184 original size:25 final size:28
Alignment explanation
Indices: 4358156--4358218 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
4358146 TTTCTTTCCT
*
4358156 TTTTTTTC-TTTCTTT-CT-CTTTTTTC
1 TTTTTTTCTTTTCTTTGCTGCATTTTTC
*
4358181 -TTTTTTCTTTTCTTTGCTGGATTTTTC
1 TTTTTTTCTTTTCTTTGCTGCATTTTTC
4358208 TTTTTTT-TTTT
1 TTTTTTTCTTTT
4358219 GTTGGAAGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 7 0.22
25 7 0.22
26 2 0.06
27 10 0.31
28 6 0.19
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (28 bp):
TTTTTTTCTTTTCTTTGCTGCATTTTTC
Found at i:4358519 original size:2 final size:2
Alignment explanation
Indices: 4358512--4358562 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
4358502 ACAACAAAGG
4358512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4358554 AT AT AT AT A
1 AT AT AT AT A
4358563 ATAAAGGATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4369914 original size:12 final size:12
Alignment explanation
Indices: 4369897--4369927 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4369887 TTCATGAGGA
4369897 AGCAGCAGGACC
1 AGCAGCAGGACC
4369909 AGCAGCAGGACC
1 AGCAGCAGGACC
4369921 AGCAGCA
1 AGCAGCA
4369928 CCACCCCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.32, G:0.32, T:0.00
Consensus pattern (12 bp):
AGCAGCAGGACC
Found at i:4370060 original size:27 final size:27
Alignment explanation
Indices: 4370030--4370085 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
4370020 CCCTAATTTG
*
4370030 CTTATCACAAGGATTATCAACAGTAGC
1 CTTATCACAAGGATCATCAACAGTAGC
4370057 CTTATCACAAGGATCATCAACAGTAGC
1 CTTATCACAAGGATCATCAACAGTAGC
4370084 CT
1 CT
4370086 CCAAGGCTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (27 bp):
CTTATCACAAGGATCATCAACAGTAGC
Found at i:4372504 original size:16 final size:16
Alignment explanation
Indices: 4372483--4372520 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
4372473 TTTTTATATC
4372483 ACAAGTCATATTCAAA
1 ACAAGTCATATTCAAA
4372499 ACAAGTCATATTCAAA
1 ACAAGTCATATTCAAA
*
4372515 GCAAGT
1 ACAAGT
4372521 AATAACATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.24
Consensus pattern (16 bp):
ACAAGTCATATTCAAA
Found at i:4374927 original size:84 final size:83
Alignment explanation
Indices: 4374828--4375077 Score: 313
Period size: 84 Copynumber: 3.0 Consensus size: 83
4374818 CCAGGGGTCT
* *
4374828 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
* *
4374893 CAAACTCAAAGGTCTTTTA
65 CGAACTCGAAGGTCTTTTA
* *
4374912 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATACCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
*
4374977 CGAACTCGAAGGTC-TTTG
65 CGAACTCGAAGGTCTTTTA
* * * * * * * *
4374995 GTGACATATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGTGTAA
1 TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTG-AGCTGAGCGTAG
*
4375060 TCGAACTCGAGGGTCTTT
64 TCGAACTCGAAGGTCTTT
4375078 GGCATTTCAA
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
83 42 0.29
84 100 0.69
85 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (83 bp):
TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAGCTGAGCGTAGTC
GAACTCGAAGGTCTTTTA
Found at i:4375078 original size:84 final size:84
Alignment explanation
Indices: 4374748--4375079 Score: 300
Period size: 84 Copynumber: 4.0 Consensus size: 84
4374738 ACAATTTTAT
* * * * * * * * * *
4374748 TGACAAATAGCCCTTCTTGCCTTGAGCTATGTTGTAAATGATATGACCTCGAAGTTGAGTGTAAT
1 TGACAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAAT
* *
4374813 CGAAC-CCAGGGGTCTTT-G
66 CGAACTCGA-AGGTCTTTGG
* * *
4374831 -G-CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTT-AGAGCTGAGCGTAG
1 TGACAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGA-AGCTGAGCGTAA
* * **
4374892 TCAAACTCAAAGGTCTTTTAT
65 TCGAACTCGAAGGTC-TTTGG
* * * *
4374913 TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT-ACCTTGGAGCTGAGCGTAGT
1 TGACAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAAT
4374977 CGAACTCGAAGGTCTTTGG
66 CGAACTCGAAGGTCTTTGG
* * * * * * * *
4374996 TGACATATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGTGTAAT
1 TGACAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAAT
*
4375061 CGAACTCGAGGGTCTTTGG
66 CGAACTCGAAGGTCTTTGG
4375080 CATTTCAAGA
Statistics
Matches: 206, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.00
80 21 0.10
81 40 0.19
82 1 0.00
83 42 0.20
84 101 0.49
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (84 bp):
TGACAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGACCTTGAAGCTGAGCGTAAT
CGAACTCGAAGGTCTTTGG
Found at i:4375192 original size:21 final size:21
Alignment explanation
Indices: 4375132--4375200 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
4375122 CAAGGGAAAC
*
4375132 TGTCTCAAGGGAGACGAATTT
1 TGTCTCAAGGGAGACGAAATT
* *
4375153 TGTTTC-A---AGA-GAAA-C
1 TGTCTCAAGGGAGACGAAATT
4375168 TGTCTCAAGGGAGACGAAATT
1 TGTCTCAAGGGAGACGAAATT
4375189 TGTCTCAAGGGA
1 TGTCTCAAGGGA
4375201 AACAATCTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
15 5 0.14
16 4 0.11
17 3 0.08
19 3 0.08
20 5 0.14
21 17 0.46
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (21 bp):
TGTCTCAAGGGAGACGAAATT
Found at i:4375211 original size:36 final size:36
Alignment explanation
Indices: 4375082--4375203 Score: 174
Period size: 36 Copynumber: 3.4 Consensus size: 36
4375072 GTCTTTGGCA
* *
4375082 TTTCAAGAGAAACTGTCTCAAGAGAGAC-ACCAATTTG
1 TTTCAAGGGAAACTGTCTCAAGGGAGACGA--AATTTG
*
4375119 TTTCAAGGGAAACTGTCTCAAGGGAGACGAATTTTG
1 TTTCAAGGGAAACTGTCTCAAGGGAGACGAAATTTG
*
4375155 TTTCAAGAGAAACTGTCTCAAGGGAGACGAAATTTG
1 TTTCAAGGGAAACTGTCTCAAGGGAGACGAAATTTG
*
4375191 TCTCAAGGGAAAC
1 TTTCAAGGGAAAC
4375204 AATCTCAAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
36 50 0.65
37 26 0.34
38 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (36 bp):
TTTCAAGGGAAACTGTCTCAAGGGAGACGAAATTTG
Found at i:4375768 original size:105 final size:105
Alignment explanation
Indices: 4375584--4376686 Score: 1821
Period size: 105 Copynumber: 10.5 Consensus size: 105
4375574 TATTGTTCCA
* ** * * *
4375584 AGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCTATGGAACTG-GAAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AAA-TGTTTGTTGACAA
4375648 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4375690 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
* *
4375755 AACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
4375795 AGTCCAGTATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAAATGTTTGCTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
*
4375860 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4375900 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
* *
4375965 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4376005 AGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAAC
4376070 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
4376111 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
*
4376176 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4376216 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
*
4376281 AGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
4376321 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
4376386 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
4376426 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAAC
*
4376491 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
4376532 AGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAAC
*
4376597 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
4376638 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
4376687 GTTGAAATTT
Statistics
Matches: 938, Mismatches: 56, Indels: 6
0.94 0.06 0.01
Matches are distributed among these distances:
105 597 0.64
106 340 0.36
107 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:4376163 original size:316 final size:315
Alignment explanation
Indices: 4375584--4376686 Score: 1830
Period size: 316 Copynumber: 3.5 Consensus size: 315
4375574 TATTGTTCCA
* * * * *
4375584 AGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCTATGGAACTG-GAAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AAA-TGTTTGTTGACAA
4375648 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * *
4375713 GTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTT
129 GTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* * * * *
4375778 GAACTTGCGTTGTCTAGAGTCCAGTATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGA
* *
4375843 AATGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
259 AATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
4375900 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
* * *
4375965 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGAAGTCCAATGTCCTTCGTTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
*
4376030 TGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
131 TGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
4376095 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA
195 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA
*
4376160 ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
260 ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
4376216 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
* *
4376281 AGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
* *
4376346 TGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
131 TGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
*
4376411 ACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG
196 ACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA-
* *
4376476 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGG
260 ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
4376532 AGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAAC
*
4376597 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
4376662 TTGAAATTGGCTCTGAAATTGAGAA
130 TTGAAATTGGCTCTGAAATTGAGAA
4376687 GTTGAAATTT
Statistics
Matches: 738, Mismatches: 45, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
315 201 0.27
316 436 0.59
317 101 0.14
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (315 bp):
AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
TGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
ACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAA
TGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:4376367 original size:421 final size:420
Alignment explanation
Indices: 4375583--4376686 Score: 1920
Period size: 421 Copynumber: 2.6 Consensus size: 420
4375573 GTATTGTTCC
* * * * * *
4375583 AAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCTATGGAACTGGAAAATTGTTTGTTGACAA
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGG-AAGTTGTTTGTTGACAA
4375648 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * *
4375713 GTTGAAATTGACTCTGAAATCGAGAAATGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTT
130 GTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* *
4375778 GAACTTGCGTTGTCTAGAGTCCAGTATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
195 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
4375843 AATGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAAT
260 AATGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAAT
*
4375908 ATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCC
325 ATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACCAGCGGTCC
4375973 CTTCGTCGTGAAGTTGAACTTGCGTTGCCTG
390 CTTCGTCGTGAAGTTGAACTTGCGTTGCCTG
* *
4376004 AAGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTGTTGACAA
4376069 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
*
4376134 GTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
130 GTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
4376199 GAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
195 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGA
* * *
4376264 AATGTTTGTTGACAACCAGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
260 AATGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAAT
4376329 ATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACCAGCGGTCC
325 ATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACCAGCGGTCC
*
4376394 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
390 CTTCGTCGTGAAGTTGAACTTGCGTTGCCTG
*
4376425 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
* *
4376490 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGTCCTTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
4376555 GTTGAAATTGGCTTTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
130 GTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* * *
4376620 TGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG
194 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAG
4376685 AA
259 AA
4376687 GTTGAAATTT
Statistics
Matches: 648, Mismatches: 32, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
421 546 0.84
422 102 0.16
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (420 bp):
AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
TTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA
ATGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATA
TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATATTTGTTGACAACCAGCGGTCCC
TTCGTCGTGAAGTTGAACTTGCGTTGCCTG
Found at i:4385568 original size:48 final size:47
Alignment explanation
Indices: 4385491--4386263 Score: 314
Period size: 48 Copynumber: 16.0 Consensus size: 47
4385481 AAATCACAAT
* * * * *
4385491 AACTTTGATGATTTGCCCCACCATCTCTTCACGGAGATCAAATCTGAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATGGAGATCAAATCTGAA
* * * * *
4385539 AATTTTGATGATTCGTTCCATCATATCTTCATGGAAATCAAATCTAAAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATGGAGATCAAATCT-GAA
* * ** *
4385588 AACTTTGATGATTCGCACCAC-TATCACTTTGTGGAGATCAAATCTGGA
1 AACTTTGACGATTCGCTCCACATAT--CTTCATGGAGATCAAATCTGAA
* ** * * * *
4385636 AACTTTGGCGATT-TTTCCTACCATCTCTTCATGGAGATAAAAACTAAA
1 AACTTTGACGATTCGCTCC-A-CATATCTTCATGGAGATCAAATCTGAA
* ** * * * *
4385684 AACTTTGATGATTTACCCCACTATCTCTTCGTGGAGATCAAATATGAA
1 AACTTTGACGATTCGCTCCAC-ATATCTTCATGGAGATCAAATCTGAA
* * * *
4385732 AACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCTGAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATGGAGATCAAATCTGAA
* * *
4385780 ATACTTTGACGATTCGCTCCACCATCA-CTTCGTGGAGATCCAATTTGAA
1 A-ACTTTGACGATTCGCTCCA-CAT-ATCTTCATGGAGATCAAATCTGAA
* *
4385829 AACTTTGACGATT-TCTCC-CACTATCTCTTAGTGGAGATCAAATCTGAA
1 AACTTTGACGATTCGCTCCACA-TATCT-TCA-TGGAGATCAAATCTGAA
* * * *** *
4385877 AACTTTGACGATTTGCCCCATCATCTCTTCGCAGAGATCAAATATGAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATGGAGATCAAATCTGAA
* ** * * * *
4385925 AACTTTAACGATT-TATCCTACCATCTTTTCGTAGAGATCAAATCTGAA
1 AACTTTGACGATTCGCTCC-A-CATATCTTCATGGAGATCAAATCTGAA
** * * * *
4385973 AACTTTGATAATTTGCCCCACCATCTCTT--TGCGAAGATCAAATCTAAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATG-G-AGATCAAATCTGAA
* * * * * * * *
4386021 AACTTTAATGATTCGTTCTATCGA-CTCGTCATGGAAATCAAATCTAAAA
1 AACTTTGACGATTCGCTCCA-C-ATATCTTCATGGAGATCAAATCT-GAA
* * ** * * *
4386070 AACCTTGATGATTTTCTCTACCATCAT-TTCGTGGAGATCCAATCT-AGA
1 AACTTTGACGATTCGCTCCA-CAT-ATCTTCATGGAGATCAAATCTGA-A
** * * * *
4386118 AACTTT-AGCGATT-TATCCCACCATCTCTTCATCGACATCAAATTTGAA
1 AACTTTGA-CGATTCGCT-CCA-CATATCTTCATGGAGATCAAATCTGAA
* * * * ** * *
4386166 AACTTTAACTATTCGCCCCAC-CATCTTTTTGCGGAGATCATATCTTAA
1 AACTTTGACGATTCGCTCCACATATCTTCAT--GGAGATCAAATCTGAA
* * * * * *
4386214 AACTTTGATGAGTCGTTCCATCATCTCTTCATGGAAATCAAATATGAA
1 AACTTTGACGATTCGCTCCA-CATATCTTCATGGAGATCAAATCTGAA
4386262 AA
1 AA
4386264 ACCTTGATGA
Statistics
Matches: 545, Mismatches: 141, Indels: 78
0.71 0.18 0.10
Matches are distributed among these distances:
45 3 0.01
46 9 0.02
47 20 0.04
48 375 0.69
49 122 0.22
50 14 0.03
51 2 0.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (47 bp):
AACTTTGACGATTCGCTCCACATATCTTCATGGAGATCAAATCTGAA
Found at i:4385834 original size:193 final size:193
Alignment explanation
Indices: 4385491--4385930 Score: 623
Period size: 193 Copynumber: 2.3 Consensus size: 193
4385481 AAATCACAAT
* * * *
4385491 AACTTTGATGATTTGCCCCACCATCTCTTCACGGAGATCAAATCTGAAAATTTTGATGATTCGTT
1 AACTTTGATGATTTGCCCCACTATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTCGTT
* * *
4385556 CCATCATATCTTCATGGAAATCAAATCTAAAAAACTTTGATGATTCGCACCACTATCACTTTGTG
66 CCATCATATCTTCATGGAAATCAAATCTAAAAAACTTTGACGATTCGCACCACCATCACTTCGTG
* * * *
4385621 GAGATCAAATCTGGAAACTTTGGCGATTTTTCCTACCATCTCTTCA-TGGAGATAAAAACTAAA
131 GAGATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTT-AGTGGAGATAAAAACTAAA
* *
4385684 AACTTTGATGATTTACCCCACTATCTCTTCGTGGAGATCAAATATGAAAACTTTGATGATTCGTT
1 AACTTTGATGATTTGCCCCACTATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTCGTT
* * * *
4385749 CCATCATCTCTTCATGGAAATCAAATCTGAAATACTTTGACGATTCGCTCCACCATCACTTCGTG
66 CCATCATATCTTCATGGAAATCAAATCTAAAAAACTTTGACGATTCGCACCACCATCACTTCGTG
* * * * * *
4385814 GAGATCCAATTTGAAAACTTTGACGATTTCTCCCACTATCTCTTAGTGGAGATCAAATCTGAA
131 GAGATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTTAGTGGAGATAAAAACTAAA
* *
4385877 AACTTTGACGATTTGCCCCA-TCATCTCTTCGCAGAGATCAAATATGAAAACTTT
1 AACTTTGATGATTTGCCCCACT-ATCTCTTCGCGGAGATCAAATATGAAAACTTT
4385931 AACGATTTAT
Statistics
Matches: 218, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
192 2 0.01
193 216 0.99
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (193 bp):
AACTTTGATGATTTGCCCCACTATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTCGTT
CCATCATATCTTCATGGAAATCAAATCTAAAAAACTTTGACGATTCGCACCACCATCACTTCGTG
GAGATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTTAGTGGAGATAAAAACTAAA
Found at i:4385929 original size:241 final size:242
Alignment explanation
Indices: 4385491--4386292 Score: 745
Period size: 241 Copynumber: 3.3 Consensus size: 242
4385481 AAATCACAAT
* * * * *
4385491 AACTTTGATGATTTGCCCCACCATCTCTTCACGGAGATCAAATCTG-AAAATTTTGATGATTCGT
1 AACTTTGATGATTCGCCCCACCATCTCTTCATGGAAATCAAATCTGAAAAACTTTGATGATTCGC
* * * * *
4385555 TCCATCAT-ATCTTCATGGAAATCAAATCTAAAAAACTTTGATGA-TTCGCACCACTATCACTTT
66 TCCACCATCA-CTTCATGGAAATCAAATCTAAAAAACTTTGATGATTTCTCACCACCATCTCTTA
* * * * * * *
4385618 GTGGAGATCAAATCTGGAAACTTTGGCGATTTTTCCTACCATCTCTTCATGGAGAT-AAAAACTA
130 GTGGAGATCAAATCTGAAAACTTTGACGATTTATCCCACCATCTCTTCA-CGAGATCAAATA-TG
* * * *
4385682 AAAACTTTGATGATTTACCCCACTATCTCTTCGTGGAGATCAAATATGAA
193 AAAACTTTAATGATTTACCCCACCATCTTTTCGTGGAGATCAAATCTGAA
** * * *
4385732 AACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCTGAAATACTTTGACGATTCGC
1 AACTTTGATGATTCGCCCCACCATCTCTTCATGGAAATCAAATCTGAAAAACTTTGATGATTCGC
* * * ** * *
4385797 TCCACCATCACTTCGTGGAGATCCAAT-TTGAAAACTTTGACGATTTCTC-CCACTATCTCTTAG
66 TCCACCATCACTTCATGGAAATCAAATCTAAAAAACTTTGATGATTTCTCACCACCATCTCTTAG
** * *
4385860 TGGAGATCAAATCTGAAAACTTTGACGATTTGCCCCATCATCTCTTCGCAGAGATCAAATATGAA
131 TGGAGATCAAATCTGAAAACTTTGACGATTTATCCCACCATCTCTTCAC-GAGATCAAATATGAA
* * * *
4385925 AACTTTAACGATTTATCCTACCATCTTTTCGTAGAGATCAAATCTGAA
195 AACTTTAATGATTTACCCCACCATCTTTTCGTGGAGATCAAATCTGAA
* * *
4385973 AACTTTGATAATTTGCCCCACCATCTCTT--TGCGAAGATCAAATCT-AAAAACTTTAATGATTC
1 AACTTTGATGATTCGCCCCACCATCTCTTCATG-GAA-ATCAAATCTGAAAAACTTTGATGATTC
* * * * * * * *
4386035 GTTCTATCGA-CTCGTCATGGAAATCAAATCTAAAAAACCTTGATGATTT-TCTCTACCATCAT-
64 GCTCCA-CCATCACTTCATGGAAATCAAATCTAAAAAACTTTGATGATTTCTCACCACCATC-TC
* * *
4386097 TTCGTGGAGATCCAATCT-AGAAACTTT-AGCGATTTATCCCACCATCTCTTCATCGACATCAAA
127 TTAGTGGAGATCAAATCTGA-AAACTTTGA-CGATTTATCCCACCATCTCTTCA-CGAGATCAAA
* ** * * * *
4386160 TTTGAAAACTTTAACT-ATTCGCCCCACCATCTTTTTGCGGAGATCATATCTTAA
189 TATGAAAACTTTAA-TGATTTACCCCACCATCTTTTCGTGGAGATCAAATCTGAA
* ** * * * **
4386214 AACTTTGATGAGTCGTTCCATCATCTCTTCATGGAAATCAAATATGAAAAACCTTGATGATTTAC
1 AACTTTGATGATTCGCCCCACCATCTCTTCATGGAAATCAAATCTGAAAAACTTTGATGATTCGC
4386279 TCCGA-CATCACTTC
66 TCC-ACCATCACTTC
4386293 GTGTGGATCC
Statistics
Matches: 447, Mismatches: 94, Indels: 39
0.77 0.16 0.07
Matches are distributed among these distances:
239 2 0.00
240 39 0.09
241 334 0.75
242 68 0.15
243 4 0.01
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (242 bp):
AACTTTGATGATTCGCCCCACCATCTCTTCATGGAAATCAAATCTGAAAAACTTTGATGATTCGC
TCCACCATCACTTCATGGAAATCAAATCTAAAAAACTTTGATGATTTCTCACCACCATCTCTTAG
TGGAGATCAAATCTGAAAACTTTGACGATTTATCCCACCATCTCTTCACGAGATCAAATATGAAA
ACTTTAATGATTTACCCCACCATCTTTTCGTGGAGATCAAATCTGAA
Found at i:4385967 original size:193 final size:190
Alignment explanation
Indices: 4385491--4386276 Score: 620
Period size: 193 Copynumber: 4.1 Consensus size: 190
4385481 AAATCACAAT
* * *
4385491 AACTTTGATGATTTGCCCCACCATCTCTTCACGGAGATCAAATCTGAAAATTTTGATGATTCGTT
1 AACTTTGATGATTTGCCCCA-CATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTC-TT
* * * * *
4385556 CCATCATATCTTCATGGAAATCAAATCTAAAAAACTTTGATGATTCGCACCACTATCACTTTGTG
64 CCATCATCTCTTCATGGAAATCAAATCT-GAAAACTTTGACGATTCGCACCACCATCACTTCGTG
* * * *
4385621 GAGATCAAATCTGGAAACTTTGGCGATTTTTCCTACCATCTCTTCATGGAGATAAAAACTAAA
128 GAGATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTTCATGGAGATAAAAACTAAA
* *
4385684 AACTTTGATGATTTACCCCACTATCTCTTCGTGGAGATCAAATATGAAAACTTTGATGATTCGTT
1 AACTTTGATGATTTGCCCCAC-ATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTC-TT
*
4385749 CCATCATCTCTTCATGGAAATCAAATCTGAAATACTTTGACGATTCGCTCCACCATCACTTCGTG
64 CCATCATCTCTTCATGGAAATCAAATCTGAAA-ACTTTGACGATTCGCACCACCATCACTTCGTG
* * * * * *
4385814 GAGATCCAATTTGAAAACTTTGACGATTTCTCCCACTATCTCTT-AGTGGAGATCAAATCTGAA
128 GAGATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTTCA-TGGAGATAAAAACTAAA
* * * *
4385877 AACTTTGACGATTTGCCCCATCATCTCTTCGCAGAGATCAAATATGAAAACTTTAACGATT-TAT
1 AACTTTGATGATTTGCCCCA-CATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTCT-T
* * * * * ** * * * * *
4385941 CCTACCATCTTTTCGTAGAGATCAAATCTGAAAACTTTGATAATTTGCCCCACCATCTCTTTGCG
64 CC-ATCATCTCTTCATGGAAATCAAATCTGAAAACTTTGACGATTCGCACCACCATCACTTCGTG
* * * * * * * * * * *
4386006 AAGATCAAATCTAAAAACTTTAATGA-TTCGTTCTATCGA-CTCGTCATGGAAATCAAATCTAAA
128 GAGATCAAATCTGAAAACTTTGACGATTTC-TCCCA-CCATCTCTTCATGGAGATAAAAACT-AA
4386069 A
190 A
* * * * * * * *
4386070 AACCTTGATGATTTTCTCTACCATCAT-TTCGTGGAGATCCAATCT-AGAAACTTT-AGCGATT-
1 AACTTTGATGATTTGCCCCA-CATC-TCTTCGCGGAGATCAAATATGA-AAACTTTGA-TGATTC
* * * * * * * ** *
4386131 TATCCCACCATCTCTTCATCGACATCAAATTTGAAAACTTTAACTATTCGCCCCACCATCTTTTT
62 T-T-CCATCATCTCTTCATGGAAATCAAATCTGAAAACTTTGACGATTCGCACCACCATCACTTC
* * * * * * * * *
4386196 GCGGAGATCATATCTTAAAACTTTGATGA-GTCGTTCCATCATCTCTTCATGGAAATCAAATA-T
125 GTGGAGATCAAATCTGAAAACTTTGACGATTTC-TCCCACCATCTCTTCATGGAGAT-AAAAACT
4386259 GAAA
188 -AAA
*
4386263 AACCTTGATGATTT
1 AACTTTGATGATTT
4386277 ACTCCGACAT
Statistics
Matches: 493, Mismatches: 84, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
191 4 0.01
192 76 0.15
193 407 0.83
194 6 0.01
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (190 bp):
AACTTTGATGATTTGCCCCACATCTCTTCGCGGAGATCAAATATGAAAACTTTGATGATTCTTCC
ATCATCTCTTCATGGAAATCAAATCTGAAAACTTTGACGATTCGCACCACCATCACTTCGTGGAG
ATCAAATCTGAAAACTTTGACGATTTCTCCCACCATCTCTTCATGGAGATAAAAACTAAA
Found at i:4386013 original size:289 final size:289
Alignment explanation
Indices: 4385564--4386219 Score: 735
Period size: 289 Copynumber: 2.3 Consensus size: 289
4385554 TTCCATCATA
* * * * * * * * * **
4385564 TCTTCATGGAAATCAAATCTAAAAAACTTTGATGATTCGCACCACTATCACTTTGTGGAGATCAA
1 TCTTCATCGACATCAAATCT-GAAAACTTTAACGATTCGCCCCACCATCTCTTCGCAGAGATCAA
* ** * * *
4385629 ATCTGGAAACTTTGGCGATTTTTCCTACCATCTCTTCATGGAGATAAAAACTAAAAACTTTGATG
65 ATCTGAAAACTTTAACGATTTATCCTACCATCTCTTCATAGAGATAAAAACTAAAAACTTTGATA
* * * * *
4385694 ATTTACCCCACTATCTCTTCGTGGAGATCAAATATGAAAACTTTGATGATTCGTTCCATC-ATCT
130 ATTTACCCCACCATCTCTTCGCGAAGATCAAATATAAAAACTTTAATGATTCGTTCCATCGA-CT
* * * *
4385758 CTTCATGGAAATCAAATCTGAAATACTTTGACGATTCGCTCCACCATCACTTCGTGGAGATCCAA
194 CGTCATGGAAATCAAATCTAAAAAACCTTGACGATTCGCTCCACCATCACTTCGTGGAGATCCAA
* * *
4385823 T-TTGAAAACTTT-GACGATTTCTCCCACTATC
259 TCTAG-AAACTTTAG-CGATTTATCCCACCATC
* * * * *
4385854 TCTT-AGTGGAGATCAAATCTGAAAACTTTGACGATTTGCCCCATCATCTCTTCGCAGAGATCAA
1 TCTTCA-TCGACATCAAATCTGAAAACTTTAACGATTCGCCCCACCATCTCTTCGCAGAGATCAA
* * * * * *
4385918 ATATGAAAACTTTAACGATTTATCCTACCATCTTTTCGTAGAGATCAAATCTGAAAACTTTGATA
65 ATCTGAAAACTTTAACGATTTATCCTACCATCTCTTCATAGAGATAAAAACTAAAAACTTTGATA
* * * *
4385983 ATTTGCCCCACCATCTCTTTGCGAAGATCAAATCTAAAAACTTTAATGATTCGTTCTATCGACTC
130 ATTTACCCCACCATCTCTTCGCGAAGATCAAATATAAAAACTTTAATGATTCGTTCCATCGACTC
* ** * *
4386048 GTCATGGAAATCAAATCTAAAAAACCTTGATGATTTTCTCTACCATCATTTCGTGGAGATCCAAT
195 GTCATGGAAATCAAATCTAAAAAACCTTGACGATTCGCTCCACCATCACTTCGTGGAGATCCAAT
4386113 CTAGAAACTTTAGCGATTTATCCCACCATC
260 CTAGAAACTTTAGCGATTTATCCCACCATC
* * * * * *
4386143 TCTTCATCGACATCAAATTTGAAAACTTTAACTATTCGCCCCACCATCTTTTTGCGGAGATCATA
1 TCTTCATCGACATCAAATCTGAAAACTTTAACGATTCGCCCCACCATCTCTTCGCAGAGATCAAA
*
4386208 TCTTAAAACTTT
66 TCTGAAAACTTT
4386220 GATGAGTCGT
Statistics
Matches: 304, Mismatches: 57, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
289 282 0.93
290 22 0.07
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (289 bp):
TCTTCATCGACATCAAATCTGAAAACTTTAACGATTCGCCCCACCATCTCTTCGCAGAGATCAAA
TCTGAAAACTTTAACGATTTATCCTACCATCTCTTCATAGAGATAAAAACTAAAAACTTTGATAA
TTTACCCCACCATCTCTTCGCGAAGATCAAATATAAAAACTTTAATGATTCGTTCCATCGACTCG
TCATGGAAATCAAATCTAAAAAACCTTGACGATTCGCTCCACCATCACTTCGTGGAGATCCAATC
TAGAAACTTTAGCGATTTATCCCACCATC
Found at i:4386138 original size:145 final size:144
Alignment explanation
Indices: 4385570--4386171 Score: 520
Period size: 145 Copynumber: 4.2 Consensus size: 144
4385560 CATATCTTCA
* * ** * ** * *
4385570 TGGAAATCAAATCTAAAAAACTTTGATGATTCGCACCA-CTATCACTTTGTGGAGATCAAATCTG
1 TGGAGATCAAATCT-GAAAACTTTGATGATTCGTTCCATC-ATCTCTTCATGGAAATCAAATCTA
* * * ** * * *
4385634 GAAACTTTGGCGATTTT-TCCTACCATC-TCTTCATGGAGATAAAAACTAAAAACTTTGATGATT
64 AAAACTTTGACGATTTTCT-CTACCATCAT-TTCGTGGAGATCCAATCTGAAAACTTTGACGATT
* *
4385697 TACCCCACTATCTCTTCG
127 TACCCCACCATCTCTTAG
*
4385715 TGGAGATCAAATATGAAAACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCTGAA
1 TGGAGATCAAATCTGAAAACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCT-AA
* ** * * *
4385780 ATACTTTGACGATTCGCTCCACCATCACTTCGTGGAGATCCAATTTGAAAACTTTGACGATTT-C
65 AAACTTTGACGATTTTCTCTACCATCATTTCGTGGAGATCCAATCTGAAAACTTTGACGATTTAC
*
4385844 TCCCACTATCTCTTAG
130 -CCCACCATCTCTTAG
* * ** *** * * *
4385860 TGGAGATCAAATCTGAAAACTTTGACGATTTGCCCCATCATCTCTTCGCAGAGATCAAATATGAA
1 TGGAGATCAAATCTGAAAACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCTAAA
* * * * ** *
4385925 AACTTTAACGATTTATC-CTACCATCTTTTCGTAGAGATCAAATCTGAAAACTTTGATAATTTGC
66 AACTTTGACGATTT-TCTCTACCATCATTTCGTGGAGATCCAATCTGAAAACTTTGACGATTTAC
*
4385989 CCCACCATCTCTTTG
130 CCCACCATCTCTTAG
* * * * * *
4386004 CGAAGATCAAATCTAAAAACTTTAATGATTCGTTCTATCGA-CTCGTCATGGAAATCAAATCTAA
1 TGGAGATCAAATCTGAAAACTTTGATGATTCGTTCCATC-ATCTCTTCATGGAAATCAAATCT-A
* *
4386068 AAAACCTTGATGATTTTCTCTACCATCATTTCGTGGAGATCCAATCT-AGAAACTTT-AGCGATT
64 AAAACTTTGACGATTTTCTCTACCATCATTTCGTGGAGATCCAATCTGA-AAACTTTGA-CGATT
*
4386131 TATCCCACCATCTCTTCA-
127 TACCCCACCATCTCTT-AG
* * *
4386149 TCGACATCAAATTTGAAAACTTT
1 TGGAGATCAAATCTGAAAACTTT
4386172 AACTATTCGC
Statistics
Matches: 361, Mismatches: 83, Indels: 26
0.77 0.18 0.06
Matches are distributed among these distances:
144 152 0.42
145 208 0.58
146 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (144 bp):
TGGAGATCAAATCTGAAAACTTTGATGATTCGTTCCATCATCTCTTCATGGAAATCAAATCTAAA
AACTTTGACGATTTTCTCTACCATCATTTCGTGGAGATCCAATCTGAAAACTTTGACGATTTACC
CCACCATCTCTTAG
Found at i:4386304 original size:193 final size:193
Alignment explanation
Indices: 4385910--4386360 Score: 520
Period size: 193 Copynumber: 2.3 Consensus size: 193
4385900 TCTCTTCGCA
* * * * * *
4385910 GAGATCAAATAT-GAAAACTTTAACGATTTATCCTACCATCTTTTCGTAGAGATCAAATCTGAAA
1 GAGATCCAATATAG-AAACTTTAGCGATTTATCCCACCATCTCTTCATAGACATCAAATCTGAAA
* * *
4385974 ACTTTGATAATTTGCCCCACCATCTCTTTGCGAAGATCAAATCTAAAAACTTTAATGATTCGTTC
65 ACTTTAATAATTCGCCCCACCATCTCTTTGCGAAGATCAAATCTAAAAACTTTAATGAGTCGTTC
* * * * *
4386039 TATCGACTCGTCATGGAAATCAAATCTAAAAAACCTTGATGATTTTCTCTACCATCATTTCGTG
130 CATCGACTCGTCATGGAAATCAAATATAAAAAACCTTGATGATTTACTCGACCATCACTTCGTG
* * *
4386103 GAGATCCAATCTAGAAACTTTAGCGATTTATCCCACCATCTCTTCATCGACATCAAATTTGAAAA
1 GAGATCCAATATAGAAACTTTAGCGATTTATCCCACCATCTCTTCATAGACATCAAATCTGAAAA
* * * * *
4386168 CTTTAACT-ATTCGCCCCACCATCTTTTTGCGGAGATCATATCTTAAAACTTTGATGAGTCGTTC
66 CTTTAA-TAATTCGCCCCACCATCTCTTTGCGAAGATCAAATCTAAAAACTTTAATGAGTCGTTC
* *
4386232 CATC-ATCTCTTCATGGAAATCAAATATGAAAAACCTTGATGATTTACTCCGA-CATCACTTCGT
130 CATCGA-CTCGTCATGGAAATCAAATATAAAAAACCTTGATGATTTACT-CGACCATCACTTCGT
4386295 G
193 G
* * * * * *
4386296 TG-GATCCAATATGGAAATTTTGGTGATTTGTCCCACCATATCTTCAATTAG--ATCAAATCTGA
1 -GAGATCCAATATAGAAACTTTAGCGATTTATCCCACCATCTCTTC-A-TAGACATCAAATCTGA
4386358 AAA
63 AAA
4386361 AAATTGACGA
Statistics
Matches: 218, Mismatches: 33, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
192 1 0.00
193 209 0.96
194 6 0.03
195 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (193 bp):
GAGATCCAATATAGAAACTTTAGCGATTTATCCCACCATCTCTTCATAGACATCAAATCTGAAAA
CTTTAATAATTCGCCCCACCATCTCTTTGCGAAGATCAAATCTAAAAACTTTAATGAGTCGTTCC
ATCGACTCGTCATGGAAATCAAATATAAAAAACCTTGATGATTTACTCGACCATCACTTCGTG
Found at i:4393062 original size:17 final size:19
Alignment explanation
Indices: 4393025--4393073 Score: 66
Period size: 17 Copynumber: 2.7 Consensus size: 19
4393015 ATTGATTTTT
*
4393025 AAAAAATAAGAATAATGGA
1 AAAAAATAAGAATAATAGA
4393044 AAAAAATAAGAA-AA-AGA
1 AAAAAATAAGAATAATAGA
*
4393061 AAAAGATAAGAAT
1 AAAAAATAAGAAT
4393074 TATCTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 13 0.48
18 2 0.07
19 12 0.44
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.12
Consensus pattern (19 bp):
AAAAAATAAGAATAATAGA
Found at i:4393597 original size:17 final size:17
Alignment explanation
Indices: 4393575--4393609 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4393565 TGTCCCAGAC
4393575 TTCAAAAGCAACTTCAA
1 TTCAAAAGCAACTTCAA
* *
4393592 TTCAAAATCAGCTTCAA
1 TTCAAAAGCAACTTCAA
4393609 T
1 T
4393610 AAAACGTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (17 bp):
TTCAAAAGCAACTTCAA
Found at i:4394259 original size:294 final size:296
Alignment explanation
Indices: 4393699--4394257 Score: 734
Period size: 294 Copynumber: 1.9 Consensus size: 296
4393689 CTTGTTCAGA
* * *
4393699 AGTAGGGAGGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAATATTATACTTAGTAGTGCAC
1 AGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAATATTATACTCAGTACTGCAC
*
4393764 TTTTGGATATGTATTGTAAGAGCGGTAGTTTGGAGGATGCCAAGTCGATTTTCGAGCGGATGGTT
66 TTTTGGATATGTACTGTAAGAGCGGTAGTTTGGAGGATGCCAAGTCGATTTTCGAGCGGATGGTT
* * * * *
4393829 CATAAGAATGTGATTTCTTGGAATACAATGATTGGAGGGTTCGCATTGAATAGTGATGGCG-TCG
131 CATAAGAATGTGATTTCATGGAATACAATGATCGGAGGGTT-GCGTTGAATGGTCATGGCGATCG
* * ** * *
4393893 AAGATTTGAATCAGTTTAAGAGTATGAAAAGAGCTGGCTTTACAGCTTCTCAAACTACACTAGCA
195 AAGCTTTGAATCAGTTTAAGAGTATGAAAAGAGCTAGCTTTACAGCTGATCAAACCACACTAACA
* * * *
4393958 AGTGTTTTAAGAGCCAGTATTGATTTAGCTCTTTTAG
260 AGTGTTCTAAGAGCCTGCACTGATTTAGCTCTTTTAG
* * * *
4393995 -G-AGGGAAGCATGTCCATGTTCATGTGTTGAAG-GTTGAAGTGAATATTATACTCAATACTGCA
1 AGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTG-TGATGCGAATATTATACTCAGTACTGCA
* ** * * *
4394057 CTTTTGGATATGTACTGTAAGAGCGGTTGTCCGGAGGATGCTAAGTTGGTTTTCGAGCGGATGGT
65 CTTTTGGATATGTACTGTAAGAGCGGTAGTTTGGAGGATGCCAAGTCGATTTTCGAGCGGATGGT
* * * *
4394122 TCATAAGAATGTGATTTCATGGAATACAATGATTGAAGGGCTTGTGTTGAATGGTCATGACGAT-
130 TCATAAGAATGTGATTTCATGGAATACAATGATCGGAGGG-TTGCGTTGAATGGTCATGGCGATC
*
4394186 GAAGCTTTGAATCAGTTAAAGAGTATGAAAAGAGCTAGCTTTAC-GTCTGATCAAACCACACTAA
194 GAAGCTTTGAATCAGTTTAAGAGTATGAAAAGAGCTAGCTTTACAG-CTGATCAAACCACACTAA
4394250 CAAGTGTT
258 CAAGTGTT
4394258 TTTAGAAGTA
Statistics
Matches: 231, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
293 2 0.01
294 225 0.97
295 4 0.02
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.32
Consensus pattern (296 bp):
AGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAATATTATACTCAGTACTGCAC
TTTTGGATATGTACTGTAAGAGCGGTAGTTTGGAGGATGCCAAGTCGATTTTCGAGCGGATGGTT
CATAAGAATGTGATTTCATGGAATACAATGATCGGAGGGTTGCGTTGAATGGTCATGGCGATCGA
AGCTTTGAATCAGTTTAAGAGTATGAAAAGAGCTAGCTTTACAGCTGATCAAACCACACTAACAA
GTGTTCTAAGAGCCTGCACTGATTTAGCTCTTTTAG
Found at i:4394625 original size:274 final size:280
Alignment explanation
Indices: 4394257--4394969 Score: 735
Period size: 274 Copynumber: 2.5 Consensus size: 280
4394247 TAACAAGTGT
* * * * *
4394257 TTTTAGAAGTAGGAAAGCAAGTCCATGTTCATGTGTTGAAGT-TCGACGCGAATTGTATACTAAA
1 TTTTAGAAGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGT-GATGCGAATTCTATACTCAG
* * **
4394321 TAATACACTTTTGGATATGTACTGTAAGAGCGGTAGTTTGGAGGATGCCAAGTTTATTTTCGAGC
65 TAATGCACTTTTGGATATGTA-TGTAAGAGCGGTAGTTTGGAGGATGCAAAGTCGATTTTCGAGC
* * * * ** * *
4394386 GGATGGTTGATAATAATGCGATCTCATGGAGTATGATGATCGGA-GGTTTTGCCCTGAATAGTGA
129 GGATGGTTCATAAGAAGGCGATCTCATGGAATACAATGATCGGAGGGTTCT-CCCTGAATAGCGA
* * ** * *
4394450 TGGCGTCG-A-TGAA-AAGAGC-TG-GC-C-TTACAGCTTCCCAAGCTACACTAGCAAGTGTTCT
193 TGGCATCGAACTAAATAAGAGCATGAGCGCTTTACAGCTGACCAAGCCACACTAACAAGTGTTCT
4394508 AAGAGCCTGCACTGGTTTAGCTC
258 AAGAGCCTGCACTGGTTTAGCTC
***
4394531 TTTTAGAAGTAGGGAAGCAAGTCCATGTTCATGAACTGAAGTGTGATGCGAATAT-TATACTCAG
1 TTTTAGAAGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAAT-TCTATACTCAG
* * * * *
4394595 TAGTGCACTCTTGGATATGTATTGTAAGAGCGGTAGTTTGGAGGATGCAAAATCGGTTTTCGACC
65 TAATGCACTTTTGGATATGTA-TGTAAGAGCGGTAGTTTGGAGGATGCAAAGTCGATTTTCGAGC
* * * * ** *
4394660 GGATAGTTCATAAGAAGGTGATTTCCTGGAATACAATGATCGGAGGGTTCTCGTTGAATGGCGAT
129 GGATGGTTCATAAGAAGGCGATCTCATGGAATACAATGATCGGAGGGTTCTCCCTGAATAGCGAT
*
4394725 GGCATCGAAGCCTTAAATCTGTTTAAGAGCATGAAATGAGCAGGCTTTACAGCTGATCAAGCCAC
194 GGCATCGAA--C-TAAA------TAAGAGC-----ATGAGC--GCTTTACAGCTGACCAAGCCAC
*
4394790 ACTAACAAGTGTTCTGAGAGCCTGCACTGGTTTAGCTC
243 ACTAACAAGTGTTCTAAGAGCCTGCACTGGTTTAGCTC
* * *
4394828 TTTTAGAAGTAGGGAGGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGGATTCTATACTCGGT
1 TTTTAGAAGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAATTCTATACTCAGT
* * * * *
4394893 ACTGCACTTTTGGACATGTATGTAAGCGTGGTAGTTTGGAGGATGCGAAGTCGATTTTCGAGCGG
66 AATGCACTTTTGGATATGTATGTAAGAGCGGTAGTTTGGAGGATGCAAAGTCGATTTTCGAGCGG
4394958 ATGGTTCATAAG
131 ATGGTTCATAAG
4394970 GATGTGATTT
Statistics
Matches: 356, Mismatches: 56, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
274 158 0.44
275 8 0.02
279 3 0.01
286 6 0.02
292 2 0.01
293 2 0.01
296 52 0.15
297 125 0.35
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (280 bp):
TTTTAGAAGTAGGGAAGCAAGTCCATGTTCATGTGTTGAAGTGTGATGCGAATTCTATACTCAGT
AATGCACTTTTGGATATGTATGTAAGAGCGGTAGTTTGGAGGATGCAAAGTCGATTTTCGAGCGG
ATGGTTCATAAGAAGGCGATCTCATGGAATACAATGATCGGAGGGTTCTCCCTGAATAGCGATGG
CATCGAACTAAATAAGAGCATGAGCGCTTTACAGCTGACCAAGCCACACTAACAAGTGTTCTAAG
AGCCTGCACTGGTTTAGCTC
Found at i:4407627 original size:15 final size:15
Alignment explanation
Indices: 4407591--4407627 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
4407581 TAATTATTTT
* *
4407591 TATTTAATTGAAAAT
1 TATTTATTTGAAAAA
4407606 TATTTATTTGAAAAA
1 TATTTATTTGAAAAA
4407621 TATTTAT
1 TATTTAT
4407628 CAAAAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TATTTATTTGAAAAA
Found at i:4408780 original size:29 final size:28
Alignment explanation
Indices: 4408747--4408804 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
4408737 AACATTTATG
*
4408747 TTTATTTTAATAATATTAAATATTATTTT
1 TTTATTATAATAATATTAAATA-TATTTT
* *
4408776 TTTATTATAATATTTTTAAATATATTTT
1 TTTATTATAATAATATTAAATATATTTT
4408804 T
1 T
4408805 AATTATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTATTATAATAATATTAAATATATTTT
Found at i:4408803 original size:26 final size:28
Alignment explanation
Indices: 4408747--4408815 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 28
4408737 AACATTTATG
*
4408747 TTTATTTTAATAATATTAAATATTATTTT
1 TTTATTATAATAATATTAAATATTA-TTT
* *
4408776 TTTATTATAATATTTTTAAATA-TATTT
1 TTTATTATAATAATATTAAATATTATTT
* *
4408803 TTAATTATCATAA
1 TTTATTATAATAA
4408816 CAAATTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 13 0.38
28 2 0.06
29 19 0.56
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTATTATAATAATATTAAATATTATTT
Found at i:4409169 original size:23 final size:23
Alignment explanation
Indices: 4409125--4409169 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
4409115 TCTAAAATTT
* *
4409125 ATTTAGTCACAATAACATATTAA
1 ATTTAGTCAAAATAACAAATTAA
*
4409148 ATTTAGTCAAAATAAGAAATTA
1 ATTTAGTCAAAATAACAAATTA
4409170 TGAAAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTTAGTCAAAATAACAAATTAA
Found at i:4411011 original size:236 final size:236
Alignment explanation
Indices: 4410598--4411065 Score: 918
Period size: 236 Copynumber: 2.0 Consensus size: 236
4410588 TACAAAATAA
4410598 TTAAATTATAAATATAATTATTGGATTAAAACTCATAATTACGGGCACATATTTTTAAGGGTGAA
1 TTAAATTATAAATATAATTATTGGATTAAAACTCATAATTACGGGCACATATTTTTAAGGGTGAA
4410663 TTGTATGATTCATCAAACGAAATCATACATCGGTGGATACTGATACGGGCCTCATTAAAAATGGA
66 TTGTATGATTCATCAAACGAAATCATACATCGGTGGATACTGATACGGGCCTCATTAAAAATGGA
4410728 CACATATTTTTAATGTATATTGTTATCATAAAATATGAAGTAAATTAAGTGGTCGGTTATGTTTT
131 CACATATTTTTAATGTATATTGTTATCATAAAATATGAAGTAAATTAAGTGGTCGGTTATGTTTT
4410793 AAAGTCATAAGATATTAGACGTGTCATGAAAATAAAAGTAT
196 AAAGTCATAAGATATTAGACGTGTCATGAAAATAAAAGTAT
*
4410834 TTAAATTATAAATATAATTATTGGATTAAAACTCATAATTACGGGCACATATTTTTAGGGGTGAA
1 TTAAATTATAAATATAATTATTGGATTAAAACTCATAATTACGGGCACATATTTTTAAGGGTGAA
4410899 TTGTATGATTCATCAAACGAAATCATACATCGGTGGATACTGATACGGGCCTCATTAAAAATGGA
66 TTGTATGATTCATCAAACGAAATCATACATCGGTGGATACTGATACGGGCCTCATTAAAAATGGA
*
4410964 CACATATTTTTAATGTATATTGTTATCATAAAATATGACGTAAATTAAGTGGTCGGTTATGTTTT
131 CACATATTTTTAATGTATATTGTTATCATAAAATATGAAGTAAATTAAGTGGTCGGTTATGTTTT
4411029 AAAGTCATAAGATATTAGACGTGTCATGAAAATAAAA
196 AAAGTCATAAGATATTAGACGTGTCATGAAAATAAAA
4411066 ATATAAATAC
Statistics
Matches: 230, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
236 230 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (236 bp):
TTAAATTATAAATATAATTATTGGATTAAAACTCATAATTACGGGCACATATTTTTAAGGGTGAA
TTGTATGATTCATCAAACGAAATCATACATCGGTGGATACTGATACGGGCCTCATTAAAAATGGA
CACATATTTTTAATGTATATTGTTATCATAAAATATGAAGTAAATTAAGTGGTCGGTTATGTTTT
AAAGTCATAAGATATTAGACGTGTCATGAAAATAAAAGTAT
Found at i:4418215 original size:161 final size:158
Alignment explanation
Indices: 4417991--4418312 Score: 416
Period size: 161 Copynumber: 2.0 Consensus size: 158
4417981 CAACTTTGGT
* *
4417991 AAAAATGGACTTAAAATAAATCACGAATTGAAGGAACAAGGAGATTATAAAAAATTGAAGGACTA
1 AAAAAAGGACTTAAAATAAATCACGAATTGAAGAAACAAGGAGATTATAAAAAATTGAAGGACTA
* *
4418056 AATTGAAAAATAAAAAAAATTGTTATCAAAAAGATGAATTAAAAGTACACATGTATTATAT-TAT
66 AATTGAAAAAT-AAAAAAA---TTATCAAAAAGAGGAATTAAAAGTACACATGGATTAT-TCTAT
* *
4418120 GGTTTAGGAGCATGC-GTCTC-AAATTTGATAAA
126 GGTTTAGGAACAT-CTGGCTCAAAATTTGATAAA
* * * * * * *
4418152 AAAAAAGGACTTAAAGTAAATGAGGAATTGAAGAAATAAGGAGATTATGAAAATTTTAAGGACTA
1 AAAAAAGGACTTAAAATAAATCACGAATTGAAGAAACAAGGAGATTATAAAAAATTGAAGGACTA
* * *
4418217 AATTGAAAAATAAAAAAATTATCAAAAAGAGGAATTGAAAGTATACATGGATTCTTCTATGGTTT
66 AATTGAAAAATAAAAAAATTATCAAAAAGAGGAATTAAAAGTACACATGGATTATTCTATGGTTT
*
4418282 AGGAACATCTGGCTCAAAATTTGGTAAA
131 AGGAACATCTGGCTCAAAATTTGATAAA
4418310 AAA
1 AAA
4418313 TGGACTTAAA
Statistics
Matches: 141, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
156 2 0.01
157 51 0.36
158 14 0.10
160 7 0.05
161 67 0.48
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.26
Consensus pattern (158 bp):
AAAAAAGGACTTAAAATAAATCACGAATTGAAGAAACAAGGAGATTATAAAAAATTGAAGGACTA
AATTGAAAAATAAAAAAATTATCAAAAAGAGGAATTAAAAGTACACATGGATTATTCTATGGTTT
AGGAACATCTGGCTCAAAATTTGATAAA
Found at i:4423364 original size:2 final size:2
Alignment explanation
Indices: 4423357--4423392 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4423347 CTTATTCTTA
4423357 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4423393 GGATGGACCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4424590 original size:23 final size:23
Alignment explanation
Indices: 4424560--4424606 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
4424550 AACTAAGCCC
4424560 AATAGTCTCCTTGAAGTGACCCT
1 AATAGTCTCCTTGAAGTGACCCT
4424583 AATAGTCTCCTTGAAGTGACCCT
1 AATAGTCTCCTTGAAGTGACCCT
4424606 A
1 A
4424607 TTTCACTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (23 bp):
AATAGTCTCCTTGAAGTGACCCT
Found at i:4425557 original size:23 final size:23
Alignment explanation
Indices: 4425492--4425565 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
4425482 AAGTGCCATA
* * * *
4425492 TAGAAATTTCCCGAATGACAACA
1 TAGAAATGTCCCGAAGGACCACG
* * *
4425515 TAGTATTGTCTCGAAGGACCACG
1 TAGAAATGTCCCGAAGGACCACG
*
4425538 TAGAAATGTCCCGAAGGACCGCG
1 TAGAAATGTCCCGAAGGACCACG
4425561 TAGAA
1 TAGAA
4425566 CCCTCGACTC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (23 bp):
TAGAAATGTCCCGAAGGACCACG
Found at i:4426501 original size:21 final size:21
Alignment explanation
Indices: 4426472--4426518 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
4426462 TCTTCACTTT
*
4426472 ACTCTTCTTTAAAGCCTTTAA
1 ACTCATCTTTAAAGCCTTTAA
4426493 ACTCATCTTTAAAGCCTTTAA
1 ACTCATCTTTAAAGCCTTTAA
4426514 ACTCA
1 ACTCA
4426519 AATCAACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (21 bp):
ACTCATCTTTAAAGCCTTTAA
Found at i:4428766 original size:39 final size:39
Alignment explanation
Indices: 4428722--4428936 Score: 145
Period size: 39 Copynumber: 5.4 Consensus size: 39
4428712 ATTTGTTTTG
*
4428722 ATTTATTTCTTTTTACAAAATAGGAAACTAAATTCAACT
1 ATTTATTTCTTTTTACAAAATAGGAAAATAAATTCAACT
** *
4428761 ATTTATTTCTTTTTTTTTACAAAATAAAAAAATAAA-TCAAAT
1 ATTTATTTC----TTTTTACAAAATAGGAAAATAAATTCAACT
* ** *
4428803 AATTTATTTCCTTTTACAAACCAGGAAACTAAATT-ATA-T
1 -ATTTATTTCTTTTTACAAAATAGGAAAATAAATTCA-ACT
* * * *
4428842 GATTCATTTCCTTTTA-AAAATAGGAAAATAAA-TCTACCG
1 -ATTTATTTCTTTTTACAAAATAGGAAAATAAATTC-AACT
* * * * *
4428881 ATTTATTTAATTTTT-CAAAACATGAAAATAAATTCTACG
1 ATTTATTT-CTTTTTACAAAATAGGAAAATAAATTCAACT
*
4428920 ATTTATTTCATTTTACA
1 ATTTATTTCTTTTTACA
4428937 GATCAAAATC
Statistics
Matches: 136, Mismatches: 26, Indels: 28
0.72 0.14 0.15
Matches are distributed among these distances:
37 1 0.01
38 24 0.18
39 73 0.54
40 4 0.03
42 5 0.04
43 29 0.21
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (39 bp):
ATTTATTTCTTTTTACAAAATAGGAAAATAAATTCAACT
Found at i:4428797 original size:43 final size:43
Alignment explanation
Indices: 4428722--4428817 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
4428712 ATTTGTTTTG
* * ** * *
4428722 ATTTATTTCTTTTTACAAAATAGGAAACTAAATTCAACT-ATTT
1 ATTTCTTTTTTTTTACAAAATAAAAAAATAAA-TCAAATAATTT
4428765 ATTTCTTTTTTTTTACAAAATAAAAAAATAAATCAAATAATTT
1 ATTTCTTTTTTTTTACAAAATAAAAAAATAAATCAAATAATTT
*
4428808 ATTTCCTTTT
1 ATTTCTTTTT
4428818 ACAAACCAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 5 0.11
43 40 0.89
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (43 bp):
ATTTCTTTTTTTTTACAAAATAAAAAAATAAATCAAATAATTT
Found at i:4429133 original size:41 final size:41
Alignment explanation
Indices: 4429050--4429143 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
4429040 ATCATATAAT
*
4429050 AAAATAAATTAAACAATTTATTTTTTATTCAAGATTCCCAAG
1 AAAATAAATTTAACAA-TTATTTTTTATTCAAGATTCCCAAG
* *
4429092 AAAATAAATTTAACAA-TATTTCTTTATTCAGGATTCTCAAG
1 AAAATAAATTTAACAATTATTT-TTTATTCAAGATTCCCAAG
4429133 AAAAT-AATTTA
1 AAAATAAATTTA
4429144 TTTCCTTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
40 11 0.23
41 22 0.46
42 15 0.31
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (41 bp):
AAAATAAATTTAACAATTATTTTTTATTCAAGATTCCCAAG
Found at i:4429296 original size:57 final size:57
Alignment explanation
Indices: 4429153--4429375 Score: 261
Period size: 58 Copynumber: 3.9 Consensus size: 57
4429143 ATTTCCTTTA
* * *
4429153 ACAAAATAGAATCATTTAAGATTCTCAAGAAAATAAATTTAACAATTTATTTATTTTT
1 ACAAAATAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTT-TTCTT
* * * *
4429211 A-AAGGATATAATCATTCATGATTCTCAAGAAAATAAATTCGACAA-TTATTTTTCTT
1 ACAA-AATAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCTT
* * * *
4429267 ACAAAATTAAAATCATTCAAGATTTTCAAGGAAATAAATTCAACAATTTATTTTTCAT
1 ACAAAA-TAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCTT
* * * *
4429325 ACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACGATTTAT
1 ACAAA-ATAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTAT
4429376 AAATTCAACA
Statistics
Matches: 141, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
56 6 0.04
57 44 0.31
58 91 0.65
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (57 bp):
ACAAAATAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCTT
Found at i:4429349 original size:115 final size:114
Alignment explanation
Indices: 4429153--4429365 Score: 284
Period size: 115 Copynumber: 1.9 Consensus size: 114
4429143 ATTTCCTTTA
* * * ** *
4429153 ACAAAATAGAATCATTTAAGATTCTCAAGAAAATAAATTTAACAATTTATTTATTTTTAAAGGAT
1 ACAAAATAAAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTATTCATAAAAGAT
* *
4429218 ATAATCATTCATGATTCTCAAGAAAATAAATTCGACAATTATTTTTCTT
66 AGAATCATTCAAGATTCTCAAGAAAATAAATTCGACAATTATTTTTCTT
* *
4429267 ACAAAATTAAAATCATTCAAGATTTTCAAGGAAATAAATTCAACAATTTATTT-TTCATACAAAG
1 ACAAAA-TAAAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTATTCATA-AAAG
* * *
4429331 TTAGAATCATTTAAGATTCTCAAGGAAATAAATTC
64 ATAGAATCATTCAAGATTCTCAAGAAAATAAATTC
4429366 AACGATTTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
114 10 0.12
115 74 0.88
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (114 bp):
ACAAAATAAAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTATTCATAAAAGAT
AGAATCATTCAAGATTCTCAAGAAAATAAATTCGACAATTATTTTTCTT
Found at i:4429377 original size:16 final size:16
Alignment explanation
Indices: 4429358--4429391 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
4429348 TCTCAAGGAA
*
4429358 ATAAATTCAACGATTT
1 ATAAATTCAACAATTT
4429374 ATAAATTCAACAATTT
1 ATAAATTCAACAATTT
4429390 AT
1 AT
4429392 TTTCCTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (16 bp):
ATAAATTCAACAATTT
Found at i:4429421 original size:74 final size:74
Alignment explanation
Indices: 4429300--4429442 Score: 232
Period size: 74 Copynumber: 1.9 Consensus size: 74
4429290 TTTCAAGGAA
* * * *
4429300 ATAAATTCAACAATTTATTTTTCATACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATT
1 ATAAATTCAACAATTTATTTTCCATACAAAGATAGAATCATTAAAGATTCTCAAAGAAATAAATT
4429365 CAACGATTT
66 CAACGATTT
* *
4429374 ATAAATTCAACAATTTATTTTCCTTATAAAGATAGAATCATTAAAGATTCTCAAAGAAATAAATT
1 ATAAATTCAACAATTTATTTTCCATACAAAGATAGAATCATTAAAGATTCTCAAAGAAATAAATT
4429439 CAAC
66 CAAC
4429443 AATATATTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (74 bp):
ATAAATTCAACAATTTATTTTCCATACAAAGATAGAATCATTAAAGATTCTCAAAGAAATAAATT
CAACGATTT
Found at i:4429444 original size:58 final size:58
Alignment explanation
Indices: 4429374--4429528 Score: 229
Period size: 58 Copynumber: 2.7 Consensus size: 58
4429364 TCAACGATTT
* * * *
4429374 ATAAATTCAACAATTTATTTTCCTTATAAAGATAGAATCATTAAAGATTCTCAAAGAA
1 ATAAATTCAACAATATATTTTCCTTACAAAGTTAGAATCATTAAAGATTATCAAAGAA
* * *
4429432 ATAAATTCAACAATATATTTTCCTTACAAAGTTAGAATCATTTAAGATTATTAAGGAA
1 ATAAATTCAACAATATATTTTCCTTACAAAGTTAGAATCATTAAAGATTATCAAAGAA
* *
4429490 GTAAATTCAACAATCTATTTTCCTTACAAAGTTAGAATC
1 ATAAATTCAACAATATATTTTCCTTACAAAGTTAGAATC
4429529 CACAAGATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 88 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (58 bp):
ATAAATTCAACAATATATTTTCCTTACAAAGTTAGAATCATTAAAGATTATCAAAGAA
Found at i:4429445 original size:132 final size:131
Alignment explanation
Indices: 4429243--4429500 Score: 374
Period size: 132 Copynumber: 2.0 Consensus size: 131
4429233 TCTCAAGAAA
* * * * *
4429243 ATAAATTCGACAATTATTTTTCTTACAAAATTAAAATCATTCAAGATTTTCAAGGAAATAAATTC
1 ATAAATTCAACAATTATTTTCCTTACAAAATTAAAATCATTAAAGATTCTCAAAGAAATAAATTC
* * *
4429308 AACAATTTATTTTTCATACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACGATT
66 AACAATATATTTTCCATACAAAGTTAGAATCATTTAAGATTATCAAGGAAATAAATTCAACGATT
4429373 T
131 T
* *
4429374 ATAAATTCAACAATTTATTTTCCTTATAAAGA-TAGAATCATTAAAGATTCTCAAAGAAATAAAT
1 ATAAATTCAACAA-TTATTTTCCTTACAAA-ATTAAAATCATTAAAGATTCTCAAAGAAATAAAT
* * *
4429438 TCAACAATATATTTTCCTTACAAAGTTAGAATCATTTAAGATTATTAAGGAAGTAAATTCAAC
64 TCAACAATATATTTTCCATACAAAGTTAGAATCATTTAAGATTATCAAGGAAATAAATTCAAC
4429501 AATCTATTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
131 12 0.11
132 99 0.88
133 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.36
Consensus pattern (131 bp):
ATAAATTCAACAATTATTTTCCTTACAAAATTAAAATCATTAAAGATTCTCAAAGAAATAAATTC
AACAATATATTTTCCATACAAAGTTAGAATCATTTAAGATTATCAAGGAAATAAATTCAACGATT
T
Done.