Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000821.1 Hibiscus syriacus cultivar Beakdansim tig00001588_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78671

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17586--17704
64
1.9
63
91
1
193
36
9
23
31
1.86
21127--21184
20
2.6
22
84
10
75
25
20
20
32
1.97
24452--24523
30
2.4
30
83
2
83
30
30
20
18
1.96
24478--24550
30
2.4
31
83
2
85
32
27
19
20
1.97
25174--25211
20
1.9
20
100
0
76
23
23
21
31
1.98
25238--25341
45
2.3
45
83
4
131
28
19
17
34
1.94
28874--28908
16
2.2
16
100
0
70
57
17
5
20
1.60
29098--29137
18
2.2
18
100
0
80
47
5
15
32
1.66
30027--30177
32
4.7
30
84
9
142
37
21
13
28
1.91
32111--32497
183
2.1
184
93
2
665
42
3
8
45
1.49
32537--32693
72
2.2
72
97
0
296
39
23
10
26
1.87
32576--32630
21
2.7
20
75
8
65
36
29
12
21
1.91
33009--33426
211
2.0
210
99
0
818
37
10
7
44
1.67
36999--37048
17
2.9
17
82
11
59
68
0
0
32
0.90
37230--37429
91
2.2
92
85
2
260
24
17
33
26
1.96
37559--37620
28
2.2
28
88
5
90
51
12
11
24
1.72
38540--38665
67
1.9
66
85
8
175
46
10
12
30
1.75
38619--38682
30
2.1
30
94
0
110
40
14
9
35
1.78
38670--38772
52
2.0
53
90
1
163
36
16
13
33
1.88
38769--38892
29
4.4
29
83
7
132
48
15
10
25
1.77
38783--38878
29
3.4
29
87
4
135
46
15
10
27
1.78
38769--38892
57
2.2
54
80
8
133
48
15
10
25
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39137--39234
36
2.8
35
81
3
117
33
12
19
34
1.89
39138--39256
36
3.4
36
80
6
111
35
12
21
30
1.91
39211--39448
105
2.3
105
82
9
283
39
10
20
29
1.87
39389--39552
37
4.4
36
79
11
181
39
12
18
29
1.88
39414--39549
72
1.9
72
88
8
206
35
13
19
31
1.90
41802--41883
26
3.4
26
69
19
86
40
10
25
23
1.87
41790--41883
46
2.1
45
87
2
134
37
10
26
25
1.89
46073--46111
10
3.7
11
83
10
55
71
0
2
25
0.98
47992--49192
106
11.4
106
94
0
2032
23
18
24
33
1.97
47992--49192
211
5.7
211
96
0
2069
23
18
24
33
1.97
52844--52882
10
3.7
11
83
10
55
71
0
2
25
0.98
55373--55422
17
2.9
17
82
11
59
68
0
0
32
0.90
56456--56512
19
3.0
19
100
0
114
26
26
15
31
1.96
57850--57932
29
2.8
29
88
1
121
42
12
14
31
1.82
62613--62695
29
2.8
29
87
1
121
43
10
13
32
1.78
64275--64305
10
3.1
10
95
0
53
35
9
19
35
1.85
67984--68017
14
2.4
14
90
9
52
20
5
2
70
1.21
74846--74894
20
2.5
20
86
6
64
28
22
14
34
1.93
75046--75129
41
2.0
41
97
0
159
25
27
16
30
1.97
77944--77995
18
2.9
18
75
13
54
71
0
3
25
1.03
77940--77985
21
2.1
23
88
8
69
69
0
4
26
1.07
77941--77994
27
2.0
28
85
10
76
70
0
3
25
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77955--78020
24
2.8
22
81
11
69
71
1
3
24
1.09
77932--78008
32
2.4
33
73
18
81
68
0
6
24
1.13

Tables:   1

The End!