Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2208279
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 10
Found at i:2166588 original size:2 final size:2
Alignment explanation
Indices: 2166581--2166611 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2166571 TGTTTGAGAT
2166581 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2166612 GATTATGATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2174359 original size:3 final size:3
Alignment explanation
Indices: 2174351--2174376 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2174341 GTAGACGTGG
2174351 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
2174377 TGGTAATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:2178398 original size:168 final size:168
Alignment explanation
Indices: 2178106--2178443 Score: 559
Period size: 168 Copynumber: 2.0 Consensus size: 168
2178096 AATAGGTCCG
* ** *
2178106 TCCCTGGCTATTTTGATAGTGGAGTACTATTTGAATCCCTAGTATGTGATGATTATAATATAATA
1 TCCCTAGCTATTCCGATAGTGGAGTACTATTTGAATCCCTAGTATGTGATGATTACAATATAATA
* * * *
2178171 CTTGTTTAGAATCTTCCTTAAATATTGACAACGTGCATACACCCTAAAAGCGTAACTGTTCGAAT
66 CTTGTTCAGAATCCTCCTTAAATATTGACAACGTGCACACACCCTAAAAACGTAACTGTTCGAAT
*
2178236 TCGAGACCTCTAGAGAAATCAAGACTCTCTCCTACCAT
131 TCAAGACCTCTAGAGAAATCAAGACTCTCTCCTACCAT
* *
2178274 TCCCTAGCTATTCCGATAGTGGAGTACTATTTGATTCCCTAGTCTGTGATGATTACAATATAATA
1 TCCCTAGCTATTCCGATAGTGGAGTACTATTTGAATCCCTAGTATGTGATGATTACAATATAATA
*
2178339 CTTGTTCAGAATCCTCCTTAAGTATTGACAACGTGCACACACCCTAAAAACGTAACTGTTCGAAT
66 CTTGTTCAGAATCCTCCTTAAATATTGACAACGTGCACACACCCTAAAAACGTAACTGTTCGAAT
*
2178404 TCAAGATCTCTAGAGAAATCAAGACTCTCTCCTACCAT
131 TCAAGACCTCTAGAGAAATCAAGACTCTCTCCTACCAT
2178442 TC
1 TC
2178444 AGGTCAATCG
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
168 157 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (168 bp):
TCCCTAGCTATTCCGATAGTGGAGTACTATTTGAATCCCTAGTATGTGATGATTACAATATAATA
CTTGTTCAGAATCCTCCTTAAATATTGACAACGTGCACACACCCTAAAAACGTAACTGTTCGAAT
TCAAGACCTCTAGAGAAATCAAGACTCTCTCCTACCAT
Found at i:2178975 original size:21 final size:21
Alignment explanation
Indices: 2178949--2178995 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
2178939 AATTTTCAAG
2178949 CATTGTTGCACCTAATTTTGA
1 CATTGTTGCACCTAATTTTGA
2178970 CATTGTTGCACCTAATTTTGA
1 CATTGTTGCACCTAATTTTGA
2178991 CATTG
1 CATTG
2178996 CAATATTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (21 bp):
CATTGTTGCACCTAATTTTGA
Found at i:2183634 original size:21 final size:21
Alignment explanation
Indices: 2183608--2183654 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
2183598 AATTTTCAAG
2183608 CATTGTTGCACCTAATTTTGA
1 CATTGTTGCACCTAATTTTGA
2183629 CATTGTTGCACCTAATTTTGA
1 CATTGTTGCACCTAATTTTGA
2183650 CATTG
1 CATTG
2183655 CAATATTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (21 bp):
CATTGTTGCACCTAATTTTGA
Found at i:2191367 original size:16 final size:17
Alignment explanation
Indices: 2191339--2191373 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
2191329 CGTATCGCCG
2191339 ACAAAATTTCACTATTC
1 ACAAAATTTCACTATTC
2191356 ACAAAA-TTCACTATTC
1 ACAAAATTTCACTATTC
2191372 AC
1 AC
2191374 GTGAATAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (17 bp):
ACAAAATTTCACTATTC
Found at i:2196088 original size:21 final size:21
Alignment explanation
Indices: 2196046--2196088 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
2196036 TTTCTGGGTT
* * *
2196046 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
2196067 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
2196088 A
1 A
2196089 CGAAATGAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:2196147 original size:66 final size:67
Alignment explanation
Indices: 2196068--2196217 Score: 223
Period size: 67 Copynumber: 2.3 Consensus size: 67
2196058 ACCCATTCAA
* *
2196068 GGGGAACCGATACCCCCTCAACG-A-AATGAATTTCCAGAATGCTAGAAGGGAATCGGTACCCCC
1 GGGGAACCGATACCCCCTCAACGTATAA-GAAATTCCAGAATGCTAGAAGGGAATCGATACCCCC
2196131 AGG
65 AGG
* * *
2196134 GGGGAACCGATACCCCCTCATCGTATAAGAAATTCCAGAATGCTTGAGGGGAATCGATACCCCCA
1 GGGGAACCGATACCCCCTCAACGTATAAGAAATTCCAGAATGCTAGAAGGGAATCGATACCCCCA
2196199 GG
66 GG
*
2196201 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
2196218 ATGAGAAAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
66 22 0.29
67 52 0.68
68 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (67 bp):
GGGGAACCGATACCCCCTCAACGTATAAGAAATTCCAGAATGCTAGAAGGGAATCGATACCCCCA
GG
Found at i:2196206 original size:20 final size:20
Alignment explanation
Indices: 2196181--2196218 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2196171 GAATGCTTGA
*
2196181 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
2196201 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
2196219 TGAGAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:2196554 original size:29 final size:30
Alignment explanation
Indices: 2196520--2196590 Score: 110
Period size: 29 Copynumber: 2.4 Consensus size: 30
2196510 CATATTATGA
2196520 TACATGACATGAAATT-ATATTAAATGTAT
1 TACATGACATGAAATTCATATTAAATGTAT
*
2196549 TACATGACATG-AATTCATATTATATGTAT
1 TACATGACATGAAATTCATATTAAATGTAT
*
2196578 TGCATGACATGAA
1 TACATGACATGAA
2196591 TATGCAGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 4 0.11
29 33 0.87
30 1 0.03
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (30 bp):
TACATGACATGAAATTCATATTAAATGTAT
Found at i:2196647 original size:30 final size:30
Alignment explanation
Indices: 2196613--2196671 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
2196603 GTTATATGAG
* *
2196613 CTATGTGATAAAGGTATGTAAATGATATGC
1 CTATGTGATAAAGGTATGGAAATAATATGC
2196643 CTATGTGATAAAGGTATGGAAATAATATG
1 CTATGTGATAAAGGTATGGAAATAATATG
2196672 ACTACGCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (30 bp):
CTATGTGATAAAGGTATGGAAATAATATGC
Found at i:2197030 original size:149 final size:149
Alignment explanation
Indices: 2196760--2197062 Score: 579
Period size: 149 Copynumber: 2.0 Consensus size: 149
2196750 GGGTAGAGGG
2196760 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
1 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
*
2196825 ACTTGATCCATAGTATATGTATATGATTCTTAAGGAATTCTACGTGGTCCTTATGGACATCATTA
66 ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
2196890 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
2196909 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
1 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
* *
2196974 ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
2197039 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
2197058 TCTAC
1 TCTAC
2197063 GGGGCACTTC
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (149 bp):
TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:2197086 original size:23 final size:23
Alignment explanation
Indices: 2197042--2197086 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2197032 ATTATTATAT
*
2197042 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
2197065 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
2197087 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:2203613 original size:29 final size:30
Alignment explanation
Indices: 2203581--2203651 Score: 110
Period size: 29 Copynumber: 2.4 Consensus size: 30
2203571 TTCCATATTA
2203581 TACATGACATGAAATT-ATATTAAATGTAT
1 TACATGACATGAAATTCATATTAAATGTAT
*
2203610 TACATGACATG-AATTCATATTATATGTAT
1 TACATGACATGAAATTCATATTAAATGTAT
*
2203639 TGCATGACATGAA
1 TACATGACATGAA
2203652 TATGCAGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 4 0.11
29 33 0.87
30 1 0.03
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (30 bp):
TACATGACATGAAATTCATATTAAATGTAT
Found at i:2203708 original size:29 final size:28
Alignment explanation
Indices: 2203674--2203729 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
2203664 GTTATATGAG
*
2203674 CTATGTGATAAAGGTATGTAAATGAATGC
1 CTATGTGATAAAGGTATGGAAAT-AATGC
2203703 CTATGTGATAAAGGTATGGAAATAATG
1 CTATGTGATAAAGGTATGGAAATAATG
2203730 ACTACGCGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (28 bp):
CTATGTGATAAAGGTATGGAAATAATGC
Found at i:2204084 original size:145 final size:148
Alignment explanation
Indices: 2203817--2204114 Score: 532
Period size: 145 Copynumber: 2.0 Consensus size: 148
2203807 GGGTAGAGGG
2203817 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
1 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
*
2203882 ACTTGATCCATAGTATATGTATATGATTCTTAAGGAATTCTACGTGGTCCTTATGGACATCATTA
66 ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
2203947 TATGGCACTACGGTGCAAT
131 TAT-GCACTACGGTGCAAT
2203966 TCTACTCGGTTCTTTAGGACATA-GTATATCCTTTGGAACCTGT-TGAAGTCTTGAAAGACACAT
1 TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
* *
2204029 ACTTGAT-CATAGTATATGTATAT-ATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
2204092 TATGCACTACGGTGCAAT
131 TATGCACTACGGTGCAAT
2204110 TCTAC
1 TCTAC
2204115 GGGGCACTCG
Statistics
Matches: 146, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
144 20 0.14
145 40 0.27
146 16 0.11
147 27 0.18
148 20 0.14
149 23 0.16
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (148 bp):
TCTACTCGGTTCTTTAGGACATATGTATATCCTTTGGAACCTGTGTGAAGTCTTGAAAGACACAT
ACTTGATCCATAGTATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGCACTACGGTGCAAT
Found at i:2204137 original size:22 final size:23
Alignment explanation
Indices: 2204095--2204137 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
2204085 ATTATTATAT
*
2204095 GCACTACGGTGCAATTCTACGGG
1 GCACTACGGTGCAATTATACGGG
*
2204118 GCACT-CGGTGCATTTATACG
1 GCACTACGGTGCAATTATACG
2204138 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
GCACTACGGTGCAATTATACGGG
Found at i:2206903 original size:7 final size:7
Alignment explanation
Indices: 2206564--2206876 Score: 452
Period size: 7 Copynumber: 46.4 Consensus size: 7
2206554 TGCTACTTCT
2206564 GGGGCTC
1 GGGGCTC
2206571 GGGGCTC
1 GGGGCTC
2206578 GGGGCTC
1 GGGGCTC
2206585 GGGGCTC
1 GGGGCTC
2206592 GGGGCTC
1 GGGGCTC
2206599 -GGGCTC
1 GGGGCTC
2206605 -GGGCTC
1 GGGGCTC
2206611 GGGGCTC
1 GGGGCTC
2206618 GGGGCTC
1 GGGGCTC
2206625 GGGGCTC
1 GGGGCTC
2206632 GGGGCTC
1 GGGGCTC
2206639 GGGGCTC
1 GGGGCTC
2206646 GGGGCTC
1 GGGGCTC
2206653 GGGGCTC
1 GGGGCTC
2206660 GGGGCTC
1 GGGGCTC
2206667 GGGGCTC
1 GGGGCTC
2206674 GGGGCTC
1 GGGGCTC
2206681 GGGGCTC
1 GGGGCTC
2206688 GGGGCTC
1 GGGGCTC
2206695 -GGGCTC
1 GGGGCTC
2206701 GGGGCTC
1 GGGGCTC
2206708 -GGGCTC
1 GGGGCTC
2206714 -GGGCTC
1 GGGGCTC
2206720 GGGGCTC
1 GGGGCTC
2206727 GGGGCTC
1 GGGGCTC
2206734 GGGGCTC
1 GGGGCTC
2206741 GGGGCTC
1 GGGGCTC
2206748 GGGGCTC
1 GGGGCTC
2206755 GGGGCTC
1 GGGGCTC
2206762 -GGGCTC
1 GGGGCTC
2206768 GGGGCTC
1 GGGGCTC
2206775 -GGGCTC
1 GGGGCTC
2206781 GGGG-TC
1 GGGGCTC
2206787 -GGG--C
1 GGGGCTC
2206791 GGGGCTC
1 GGGGCTC
*
2206798 GGGGTTC
1 GGGGCTC
2206805 GGGGCTC
1 GGGGCTC
*
2206812 GGGGTTC
1 GGGGCTC
*
2206819 -GGGTTC
1 GGGGCTC
*
2206825 GGGGTTC
1 GGGGCTC
*
2206832 GGGGTTC
1 GGGGCTC
*
2206839 GGGGTTC
1 GGGGCTC
*
2206846 GGGGTTC
1 GGGGCTC
*
2206853 GGGGTTC
1 GGGGCTC
*
2206860 GGGGTTC
1 GGGGCTC
*
2206867 GGGGTTC
1 GGGGCTC
2206874 GGG
1 GGG
2206877 TTCGGGGTTT
Statistics
Matches: 294, Mismatches: 3, Indels: 18
0.93 0.01 0.06
Matches are distributed among these distances:
4 1 0.00
5 6 0.02
6 50 0.17
7 237 0.81
ACGTcount: A:0.00, C:0.26, G:0.57, T:0.18
Consensus pattern (7 bp):
GGGGCTC
Found at i:2206917 original size:7 final size:7
Alignment explanation
Indices: 2206907--2208279 Score: 2411
Period size: 7 Copynumber: 197.9 Consensus size: 7
2206897 GTTCGGGTTC
2206907 GGGTTTA
1 GGGTTTA
2206914 GGGTTTA
1 GGGTTTA
2206921 GGGTTTA
1 GGGTTTA
2206928 GGGTTTA
1 GGGTTTA
2206935 GGGTTTA
1 GGGTTTA
2206942 GGGTTTA
1 GGGTTTA
2206949 GGGTTTA
1 GGGTTTA
2206956 GGG-TTA
1 GGGTTTA
2206962 GGGTTTA
1 GGGTTTA
2206969 GGGTTTA
1 GGGTTTA
2206976 GGGTTTA
1 GGGTTTA
2206983 GGGTTTA
1 GGGTTTA
2206990 -GGTTTA
1 GGGTTTA
2206996 GGGTTTA
1 GGGTTTA
2207003 GGGTTTA
1 GGGTTTA
2207010 GGG-TTA
1 GGGTTTA
2207016 GGGTTTA
1 GGGTTTA
2207023 GGGTTTA
1 GGGTTTA
2207030 GGGTTTA
1 GGGTTTA
2207037 GGGTTTA
1 GGGTTTA
2207044 GGGTTTA
1 GGGTTTA
2207051 GGGTTTA
1 GGGTTTA
2207058 -GGTTTA
1 GGGTTTA
2207064 -GGTTTA
1 GGGTTTA
2207070 GGGTTTA
1 GGGTTTA
2207077 GGG-TTA
1 GGGTTTA
2207083 GGGTTTA
1 GGGTTTA
2207090 GGGTTTA
1 GGGTTTA
2207097 GGGTTTA
1 GGGTTTA
2207104 GGGTTTA
1 GGGTTTA
2207111 GGGTTTA
1 GGGTTTA
2207118 GGGTTTA
1 GGGTTTA
2207125 GGGTTTA
1 GGGTTTA
2207132 -GGTTTA
1 GGGTTTA
2207138 GGGTTTA
1 GGGTTTA
2207145 GGGTTTTA
1 GGG-TTTA
2207153 -GGTTTA
1 GGGTTTA
2207159 GGGTTTA
1 GGGTTTA
2207166 GGGTTTA
1 GGGTTTA
2207173 GGGTTTA
1 GGGTTTA
2207180 GGGTTTA
1 GGGTTTA
2207187 GGGTTTA
1 GGGTTTA
2207194 GGGTTTA
1 GGGTTTA
2207201 GGGTTTA
1 GGGTTTA
2207208 GGGTTTA
1 GGGTTTA
2207215 GGGTTTA
1 GGGTTTA
2207222 GGGTTTA
1 GGGTTTA
2207229 GGGTTTA
1 GGGTTTA
2207236 GGGTTTA
1 GGGTTTA
2207243 GGGTTTA
1 GGGTTTA
2207250 GGGTTTA
1 GGGTTTA
2207257 GGGTTTA
1 GGGTTTA
2207264 GGGTTTA
1 GGGTTTA
2207271 GGGTTTA
1 GGGTTTA
2207278 GGGTTTA
1 GGGTTTA
2207285 GGGTTTA
1 GGGTTTA
2207292 GGGTTTA
1 GGGTTTA
2207299 -GGTTTA
1 GGGTTTA
2207305 GGGTTTA
1 GGGTTTA
2207312 GGGTTTA
1 GGGTTTA
2207319 GGGTTTA
1 GGGTTTA
2207326 GGGTTTA
1 GGGTTTA
2207333 GGGTTTA
1 GGGTTTA
2207340 GGGTTTA
1 GGGTTTA
2207347 GGGTTTA
1 GGGTTTA
2207354 GGGTTTA
1 GGGTTTA
2207361 GGGTTTA
1 GGGTTTA
2207368 GGGTTTA
1 GGGTTTA
2207375 GGGTTTA
1 GGGTTTA
2207382 GGGTTTA
1 GGGTTTA
2207389 GGGTTTA
1 GGGTTTA
2207396 GGGTTTA
1 GGGTTTA
2207403 GGGTTTA
1 GGGTTTA
2207410 GGGTTTA
1 GGGTTTA
2207417 GGGTTTA
1 GGGTTTA
2207424 GGGTTTA
1 GGGTTTA
2207431 GGGTTTA
1 GGGTTTA
2207438 GGGTTTA
1 GGGTTTA
2207445 GGGTTTA
1 GGGTTTA
2207452 GGGTTTA
1 GGGTTTA
2207459 GGGTTTA
1 GGGTTTA
2207466 GGGTTTA
1 GGGTTTA
2207473 GGGTTTA
1 GGGTTTA
2207480 GGGTTTA
1 GGGTTTA
2207487 GGGTTTA
1 GGGTTTA
2207494 GGGTTTA
1 GGGTTTA
2207501 GGGTTTA
1 GGGTTTA
2207508 GGGTTTA
1 GGGTTTA
2207515 GGGTTTA
1 GGGTTTA
2207522 GGGTTTA
1 GGGTTTA
2207529 GGGTTTA
1 GGGTTTA
2207536 GGGTTTA
1 GGGTTTA
2207543 GGGTTTA
1 GGGTTTA
2207550 GGGTTTA
1 GGGTTTA
2207557 GGGTTTA
1 GGGTTTA
2207564 GGGTTTA
1 GGGTTTA
2207571 GGGTTTA
1 GGGTTTA
2207578 -GG-TTA
1 GGGTTTA
2207583 GGGTTTA
1 GGGTTTA
2207590 GGGTTTA
1 GGGTTTA
2207597 GGGTTTA
1 GGGTTTA
2207604 -GGTTTAGGA
1 GGGTTT---A
2207613 GGGTTTA
1 GGGTTTA
2207620 GGGTTTA
1 GGGTTTA
2207627 GGGTTTA
1 GGGTTTA
2207634 GGGTTTA
1 GGGTTTA
2207641 GGGTTTA
1 GGGTTTA
2207648 GGGTTTA
1 GGGTTTA
2207655 GGGTTTA
1 GGGTTTA
2207662 GGGTTTA
1 GGGTTTA
2207669 GGGTTTTA
1 GGG-TTTA
2207677 GGGTTTA
1 GGGTTTA
2207684 GGGTTTA
1 GGGTTTA
2207691 GGG-TTA
1 GGGTTTA
2207697 GGGTTTA
1 GGGTTTA
2207704 GGGTTTTA
1 GGG-TTTA
2207712 GGGTTTA
1 GGGTTTA
2207719 GGGTTTA
1 GGGTTTA
2207726 GGGTTTA
1 GGGTTTA
2207733 GGGTTTA
1 GGGTTTA
2207740 GGGTTTA
1 GGGTTTA
2207747 GGGTTTA
1 GGGTTTA
2207754 GGGTTTA
1 GGGTTTA
2207761 GGGTTTA
1 GGGTTTA
2207768 GGGTTTA
1 GGGTTTA
2207775 GGG-TTA
1 GGGTTTA
2207781 GGGTTTA
1 GGGTTTA
2207788 GGGTTTA
1 GGGTTTA
2207795 GGG-TTA
1 GGGTTTA
2207801 GGGTTTA
1 GGGTTTA
2207808 GGGTTTA
1 GGGTTTA
2207815 GGGTTTA
1 GGGTTTA
2207822 GGGTTTA
1 GGGTTTA
*
2207829 GGGTTTGG
1 GGGTTT-A
2207837 GGGTTTA
1 GGGTTTA
2207844 GGG-TTA
1 GGGTTTA
2207850 GGGTTTA
1 GGGTTTA
2207857 GGGTTTA
1 GGGTTTA
2207864 GGGTTTA
1 GGGTTTA
2207871 GGGTTTA
1 GGGTTTA
2207878 GGGTTTA
1 GGGTTTA
2207885 GGGTTTA
1 GGGTTTA
2207892 GGGTTTA
1 GGGTTTA
2207899 GGGTTTA
1 GGGTTTA
2207906 GGG--TA
1 GGGTTTA
2207911 GGGTTTA
1 GGGTTTA
2207918 GGGTTTA
1 GGGTTTA
2207925 GGGTTTA
1 GGGTTTA
2207932 GGGTTTA
1 GGGTTTA
2207939 GGGTTT-
1 GGGTTTA
2207945 GGGTTTA
1 GGGTTTA
2207952 GGGTTTA
1 GGGTTTA
2207959 GGGTTTA
1 GGGTTTA
2207966 GGGTTTA
1 GGGTTTA
2207973 GGGTTTA
1 GGGTTTA
*
2207980 GGTTTTA
1 GGGTTTA
2207987 GGGTTTA
1 GGGTTTA
2207994 GGGTTTTA
1 GGG-TTTA
2208002 GGGTTT-
1 GGGTTTA
2208008 GGGTTTA
1 GGGTTTA
2208015 GGGTTTA
1 GGGTTTA
2208022 GGGTTTA
1 GGGTTTA
2208029 -GGTTTAA
1 GGGTTT-A
2208036 GGGTTTA
1 GGGTTTA
2208043 GGGTTTA
1 GGGTTTA
2208050 GGGTTTA
1 GGGTTTA
2208057 GGGTTTA
1 GGGTTTA
2208064 GGGTTTA
1 GGGTTTA
2208071 GGGTTTA
1 GGGTTTA
2208078 GGGTTTA
1 GGGTTTA
2208085 GGGTTTA
1 GGGTTTA
2208092 GGG-TTA
1 GGGTTTA
2208098 -GG-TTA
1 GGGTTTA
2208103 GGGTTTA
1 GGGTTTA
2208110 GGGTTTA
1 GGGTTTA
2208117 GGGTTTA
1 GGGTTTA
2208124 GGGTTTA
1 GGGTTTA
2208131 GGGTTTA
1 GGGTTTA
*
2208138 GGGTTTTTTC
1 GGG---TTTA
2208148 GGGTTTA
1 GGGTTTA
2208155 GGGTTTA
1 GGGTTTA
2208162 GGGTTTA
1 GGGTTTA
2208169 GGGTTTTA
1 GGG-TTTA
2208177 GGGTTTA
1 GGGTTTA
2208184 GGGTTTA
1 GGGTTTA
2208191 GGGTTTA
1 GGGTTTA
2208198 GGGTTTA
1 GGGTTTA
2208205 GGGTTTA
1 GGGTTTA
2208212 GGGTTTA
1 GGGTTTA
2208219 GGG-TTA
1 GGGTTTA
2208225 GGGTTTA
1 GGGTTTA
2208232 GGGTTTA
1 GGGTTTA
2208239 GGG-TTA
1 GGGTTTA
2208245 GGGTTTTA
1 GGG-TTTA
2208253 GGGTTTA
1 GGGTTTA
2208260 GGGTTTA
1 GGGTTTA
2208267 GGGTTTA
1 GGGTTTA
2208274 GGGTTT
1 GGGTTT
Statistics
Matches: 1322, Mismatches: 6, Indels: 76
0.94 0.00 0.05
Matches are distributed among these distances:
5 13 0.01
6 119 0.09
7 1129 0.85
8 49 0.04
9 1 0.00
10 11 0.01
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Done.