genome.fa.s8215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008215.1 Hibiscus syriacus cultivar Beakdansim tig00110841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76829

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519--2071	285	2.0	283	94	3	990	29	13	25	31	1.93
4421--4461	2	21.0	2	90	5	66	48	0	0	51	1.00
5133--5159	12	2.2	12	100	0	54	55	0	7	37	1.28
6350--6378	15	1.9	15	100	0	58	27	27	24	20	1.99
6462--6564	29	3.6	29	90	3	165	18	19	16	45	1.85
8714--8749	3	11.3	3	88	11	54	69	0	0	30	0.89
8717--8749	13	2.5	13	100	0	66	69	0	0	30	0.88
8713--8743	16	1.9	16	100	0	62	70	0	0	29	0.87
9068--9770	121	5.8	121	87	4	922	24	16	25	34	1.95
9068--9770	242	2.9	243	88	2	1019	24	16	25	34	1.95
9729--9888	58	2.6	64	86	6	215	27	14	21	36	1.92
9864--10102	64	3.7	64	91	0	388	30	11	22	35	1.90
9864--10099	129	1.8	128	92	0	400	30	11	22	35	1.90
10695--10770	32	2.4	31	82	6	98	35	23	14	26	1.93
14581--14618	16	2.3	17	90	4	60	63	7	5	23	1.42
14827--14891	29	2.2	29	86	5	87	61	9	7	21	1.51
15299--15350	22	2.4	22	100	0	104	19	53	17	9	1.70
15672--15754	3	28.3	3	95	4	152	67	0	0	32	0.91
16176--16209	3	10.7	3	87	12	50	70	0	0	29	0.87
16163--16216	17	3.2	16	78	19	56	68	1	1	27	1.10
16172--16206	10	3.5	10	85	14	54	71	0	0	28	0.86
16172--16209	13	2.9	13	88	11	60	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16163--16216	20	2.7	20	91	8	83	68	1	1	27	1.10
17004--17032	2	14.5	2	100	0	58	48	0	0	51	1.00
18434--18475	18	2.2	20	83	8	52	26	2	2	69	1.13
19091--19115	13	1.9	13	100	0	50	32	24	8	36	1.84
19626--19689	27	2.4	27	87	7	94	46	0	0	53	1.00
20112--20147	18	1.9	19	88	5	56	66	22	11	0	1.22
25058--25089	15	2.1	15	94	0	55	25	18	9	46	1.79
32418--32464	4	12.8	4	79	20	50	82	0	17	0	0.66
32414--32466	15	3.5	15	89	7	72	83	0	16	0	0.66
32414--32476	16	4.1	15	82	13	76	80	0	19	0	0.70
32414--32473	10	5.7	10	81	14	68	81	0	18	0	0.69
33745--34055	83	3.6	83	89	4	435	26	13	22	38	1.91
33745--34055	175	1.8	166	86	7	444	26	13	22	38	1.91
33893--34070	92	1.9	92	90	2	286	28	12	23	35	1.91
34433--34537	52	2.0	52	98	0	201	37	13	17	32	1.88
34834--35718	113	7.8	112	92	2	1387	38	15	19	27	1.91
35661--35789	36	3.5	39	86	12	184	49	10	20	20	1.77
35696--35791	17	5.6	16	67	23	61	50	9	18	21	1.75
35546--35896	182	1.9	185	87	6	518	43	13	18	24	1.87
36137--36199	13	4.8	13	74	20	51	44	0	0	55	0.99
36623--36658	18	1.9	19	88	5	56	66	22	11	0	1.22
48586--48643	29	2.0	28	83	3	71	32	10	3	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53239--53369	36	3.6	36	87	0	190	27	13	14	44	1.83
53978--54010	14	2.4	14	90	10	50	21	3	12	63	1.41
61568--61672	18	5.8	18	94	0	174	19	20	33	26	1.96
61568--61672	54	1.9	54	96	0	192	19	20	33	26	1.96
63537--63580	18	2.4	18	100	0	88	36	0	54	9	1.32
66339--66396	19	2.8	22	82	10	77	29	32	15	22	1.95
74146--74202	24	2.4	23	88	11	89	12	1	22	63	1.38
74496--74562	27	2.6	25	86	9	98	35	0	35	28	1.58
74994--75046	22	2.5	21	85	11	65	26	30	20	22	1.98
75088--75142	21	2.6	21	97	0	101	30	23	23	21	1.99

Tables:   1

The End!