Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008217.1 Hibiscus syriacus cultivar Beakdansim tig00110847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2417150
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 14
Found at i:4004 original size:15 final size:15
Alignment explanation
Indices: 3986--4065 Score: 142
Period size: 15 Copynumber: 5.3 Consensus size: 15
3976 CGAGGGTTCT
3986 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
*
4001 GTAGTCATTCGGGAC
1 GTAGTCCTTCGGGAC
*
4016 GTAGTCATTCGGGAC
1 GTAGTCCTTCGGGAC
4031 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
4046 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
4061 GTAGT
1 GTAGT
4066 GGTCCTACGG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 63 1.00
ACGTcount: A:0.16, C:0.23, G:0.34, T:0.28
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:9467 original size:15 final size:15
Alignment explanation
Indices: 9443--9481 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
9433 GTAACTCTTT
*
9443 TGGGGCCATTCTGTA
1 TGGGGCCATTCTATA
*
9458 TGGGGTCATTCTATA
1 TGGGGCCATTCTATA
*
9473 TGGTGCCAT
1 TGGGGCCAT
9482 GGAGATAGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.15, C:0.18, G:0.31, T:0.36
Consensus pattern (15 bp):
TGGGGCCATTCTATA
Found at i:14008 original size:146 final size:145
Alignment explanation
Indices: 13829--14116 Score: 567
Period size: 146 Copynumber: 2.0 Consensus size: 145
13819 ACTCTATATC
13829 GTAATATTTGAGTCTAAATATTTTTTTAATCATTGAGTTTATTTAATGGATTAGATGTAACATAT
1 GTAATATTTGAGTCTAAATATTTTTTTAATCATTGAGTTTATTTAATGGATTAGATGTAACATAT
13894 TAAATCCATAAATAACGTAACTGATAAGTTTGTATTATTTGAAGCAGGTAGGGCTCGGTCCTATG
66 TAAATCCATAAATAACGTAACTGATAAGTTTGTATTATTTGAAGCAGGTAGGGCTCGGTCCTATG
13959 CAATATCGACAGAGA
131 CAATATCGACAGAGA
13974 GTAACTATTTGAGTCTAAATATTTTTTTAATCATTGAGTTTATTTAATGGATTAGATGTAACATA
1 GTAA-TATTTGAGTCTAAATATTTTTTTAATCATTGAGTTTATTTAATGGATTAGATGTAACATA
14039 TTAAATCCATAAATAACGTAACTGATAAGTTTGTATTATTTGAAGCAGGTAGGGCTCGGTCCTAT
65 TTAAATCCATAAATAACGTAACTGATAAGTTTGTATTATTTGAAGCAGGTAGGGCTCGGTCCTAT
14104 GCAATATCGACAG
130 GCAATATCGACAG
14117 TTGGTAGGCC
Statistics
Matches: 142, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
145 4 0.03
146 138 0.97
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (145 bp):
GTAATATTTGAGTCTAAATATTTTTTTAATCATTGAGTTTATTTAATGGATTAGATGTAACATAT
TAAATCCATAAATAACGTAACTGATAAGTTTGTATTATTTGAAGCAGGTAGGGCTCGGTCCTATG
CAATATCGACAGAGA
Found at i:20311 original size:55 final size:56
Alignment explanation
Indices: 20197--20322 Score: 157
Period size: 55 Copynumber: 2.3 Consensus size: 56
20187 TTCTATTTTT
* * * * *
20197 TAGATAAATTCGATTTCAAAATCTCTATTTTTATGCTTCTTAATAGCAACAACTGA
1 TAGATATATTCGATTTCAAAATCCCTATTTTTATACTTATTAATAGCAACAACTAA
* *
20253 TAGATATATTCGATTTCGAGATCCCTA-TTTTATACTTATTAAT-GACAACAACTAA
1 TAGATATATTCGATTTCAAAATCCCTATTTTTATACTTATTAATAG-CAACAACTAA
*
20308 TAGATATATTTGATT
1 TAGATATATTCGATT
20323 CGGACCATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
54 1 0.02
55 37 0.61
56 23 0.38
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (56 bp):
TAGATATATTCGATTTCAAAATCCCTATTTTTATACTTATTAATAGCAACAACTAA
Found at i:28173 original size:43 final size:43
Alignment explanation
Indices: 28087--28178 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
28077 TTAATCGAAA
**
28087 AGAAAAGTAATAAGAATCTGAAATTTTGATAGATTGATTGAAT
1 AGAAAAGTAATAAGAATCTGAAATTTTGATAGATTGAGAGAAT
* * * *
28130 AGAAAAGTATTAGGAATCATGAAA-TTTGATTGTTTGAGAGAAT
1 AGAAAAGTAATAAGAATC-TGAAATTTTGATAGATTGAGAGAAT
*
28173 AAAAAA
1 AGAAAA
28179 AATTAACCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 36 0.88
44 5 0.12
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.30
Consensus pattern (43 bp):
AGAAAAGTAATAAGAATCTGAAATTTTGATAGATTGAGAGAAT
Found at i:28879 original size:62 final size:61
Alignment explanation
Indices: 28776--28899 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 61
28766 CTAAAACTTT
* *
28776 CAAGCATAAACAATTTCAACTTATCGACTTCGAAGCAGTAGGCTT-TACATTCAATAATTTG
1 CAAGCATAAACAATTTCAAATCATCGACTTCGAAGCAGTAGGCTTCT-CATTCAATAATTTG
* * *
28837 CAAGCTTAAACAATTTCAAATCATTCGACTTTGAAGCAGTAGGCTTCTCATTCCATAATTTG
1 CAAGCATAAACAATTTCAAATCA-TCGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTG
28899 C
1 C
28900 TTTGAATCTT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
61 20 0.36
62 35 0.62
63 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (61 bp):
CAAGCATAAACAATTTCAAATCATCGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTG
Found at i:30676 original size:17 final size:17
Alignment explanation
Indices: 30656--30698 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
30646 ATGCAGCAGA
*
30656 AAACACAATGGAACGAT
1 AAACACAAAGGAACGAT
30673 AAACACAAAGGAACGAT
1 AAACACAAAGGAACGAT
30690 AAACACAAA
1 AAACACAAA
30699 ATCCACTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.60, C:0.19, G:0.14, T:0.07
Consensus pattern (17 bp):
AAACACAAAGGAACGAT
Found at i:32816 original size:62 final size:61
Alignment explanation
Indices: 32707--32824 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 61
32697 CTTTTAAGGA
* * * *
32707 TAAACAATTTCAAATTATTGGCTTCGAAGCAGTAGGCTTTACGTTCAATAATTTGCAAGCT
1 TAAACAATTTCAAATCATTGACCTCGAAGCAGTAGGCTTTACATTCAATAATTTGCAAGCT
32768 TAAACAATTTCAAATCATTTGACACT-GAAGCAGTAGGCTTCT-CATTCAATAATTTGC
1 TAAACAATTTCAAATCA-TTGAC-CTCGAAGCAGTAGGCTT-TACATTCAATAATTTGC
32825 TTTCAATCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
61 16 0.32
62 32 0.64
63 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (61 bp):
TAAACAATTTCAAATCATTGACCTCGAAGCAGTAGGCTTTACATTCAATAATTTGCAAGCT
Found at i:34333 original size:36 final size:37
Alignment explanation
Indices: 34262--34346 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
34252 ATCCCATTAT
*
34262 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
* *
34298 TATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
1 CATTTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
34334 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
34347 TTGGTTACCA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.30
37 30 0.70
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (37 bp):
CATTTTTCAAAGAAACATCTACCAAACTTTGAAAAAC
Found at i:38437 original size:16 final size:16
Alignment explanation
Indices: 38413--38445 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
38403 TATCGCCAAT
*
38413 CAAATTTCACTATTCA
1 CAAAATTCACTATTCA
38429 CAAAATTCACTATTCA
1 CAAAATTCACTATTCA
38445 C
1 C
38446 GTGAATAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
CAAAATTCACTATTCA
Found at i:41847 original size:13 final size:13
Alignment explanation
Indices: 41827--41866 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
41817 TTTTACCGGA
*
41827 TAAAAAAACGGTT
1 TAAAAAACCGGTT
41840 TGAAAAAACCGG-T
1 T-AAAAAACCGGTT
41853 TAAAAAACCGGTT
1 TAAAAAACCGGTT
41866 T
1 T
41867 TTATCCGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 10 0.42
13 5 0.21
14 9 0.38
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.23
Consensus pattern (13 bp):
TAAAAAACCGGTT
Found at i:41857 original size:12 final size:12
Alignment explanation
Indices: 41821--41865 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
41811 CGGTTTTTTT
*
41821 ACCGGATAAAAA
1 ACCGGTTAAAAA
*
41833 AACGGTTTGAAAAA
1 ACCGG-TT-AAAAA
41847 ACCGGTTAAAAA
1 ACCGGTTAAAAA
41859 ACCGGTT
1 ACCGGTT
41866 TTTATCCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 16 0.57
13 3 0.11
14 9 0.32
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.18
Consensus pattern (12 bp):
ACCGGTTAAAAA
Found at i:44098 original size:20 final size:20
Alignment explanation
Indices: 44073--44117 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
44063 GTTTATTTTA
44073 TAACTTTATTTCAATTATCG
1 TAACTTTATTTCAATTATCG
*
44093 TAACTTTGTTTCAATTATCG
1 TAACTTTATTTCAATTATCG
44113 -AACTT
1 TAACTT
44118 GAAGTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.49
Consensus pattern (20 bp):
TAACTTTATTTCAATTATCG
Found at i:44160 original size:33 final size:33
Alignment explanation
Indices: 44107--44204 Score: 155
Period size: 32 Copynumber: 3.0 Consensus size: 33
44097 TTTGTTTCAA
44107 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
44139 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
44172 TTATCAAAC-TGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
44204 T
1 T
44205 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 33 0.53
33 29 0.47
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:44233 original size:13 final size:13
Alignment explanation
Indices: 44190--44244 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
44180 CTGGAAGTAT
44190 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
44203 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
44217 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
44230 TTAAGTATTTGAA
1 TTAAGTATTTCAA
44243 TT
1 TT
44245 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:44704 original size:21 final size:18
Alignment explanation
Indices: 44659--44692 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
44649 GGTTTTTTAT
44659 AACCGG-TTTTTTAAAAA
1 AACCGGTTTTTTTAAAAA
44676 AACCGGTTTTTTTAAAA
1 AACCGGTTTTTTTAAAA
44693 CCGAAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
AACCGGTTTTTTTAAAAA
Found at i:44812 original size:15 final size:17
Alignment explanation
Indices: 44786--44817 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
44776 TTCTATGGGA
44786 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
44802 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
44818 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:49842 original size:29 final size:29
Alignment explanation
Indices: 49809--49888 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
49799 TAAAGCATAT
49809 AGAATATTTTTAATTTAATTATAATTTTG
1 AGAATATTTTTAATTTAATTATAATTTTG
** *
49838 AGAATATTTTTTGTTTCAA-TAT-ATTTTT
1 AGAATATTTTTAATTT-AATTATAATTTTG
49866 A-AA-A-TTTTAATTTAATTAATAAT
1 AGAATATTTTTAATTTAATT-ATAAT
49889 ATTTTAATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
24 2 0.05
25 8 0.19
26 3 0.07
27 4 0.10
28 6 0.14
29 17 0.40
30 2 0.05
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (29 bp):
AGAATATTTTTAATTTAATTATAATTTTG
Found at i:51910 original size:21 final size:23
Alignment explanation
Indices: 51886--51929 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
51876 AGTAAGAGGG
*
51886 GGAGG-GC-GAAGAGAGGGGTGA
1 GGAGGCGCTGAAGAGAGCGGTGA
51907 GGAGGCCGCTGAAGAGAGCGGTG
1 GGAGG-CGCTGAAGAGAGCGGTG
51930 GCGGAGTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
23 2 0.11
24 12 0.63
ACGTcount: A:0.25, C:0.11, G:0.57, T:0.07
Consensus pattern (23 bp):
GGAGGCGCTGAAGAGAGCGGTGA
Found at i:52112 original size:23 final size:23
Alignment explanation
Indices: 52081--52135 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
52071 TCATTTTTTA
*
52081 TTTT-TTAATTATTAACTTAAAC
1 TTTTATTAATTATCAACTTAAAC
52103 TTTTATTAATTATCAACTTAAAC
1 TTTTATTAATTATCAACTTAAAC
52126 TTTTATTAAT
1 TTTTATTAAT
52136 GGGTTAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTATTAATTATCAACTTAAAC
Found at i:52477 original size:62 final size:61
Alignment explanation
Indices: 52359--52480 Score: 165
Period size: 62 Copynumber: 2.0 Consensus size: 61
52349 GCTAACCCTA
* * * * *
52359 AAGCATAAACAATTTCAAATTATTGGCTTCGAAGCAGTAGGCTTTACGTTCGATAATTTGC
1 AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTTACATTCAATAATTTGC
*
52420 AAGCTTAAACAATCTCAAATCATTTGACTTCGAAGCAGTAGGCTTCT-CATTCAATAATTTG
1 AAGCATAAACAATCTCAAATCA-TTGACTTCGAAGCAGTAGGCTT-TACATTCAATAATTTG
52481 ATTTCAATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
61 19 0.36
62 33 0.62
63 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (61 bp):
AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTTACATTCAATAATTTGC
Found at i:56012 original size:12 final size:12
Alignment explanation
Indices: 55995--56024 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
55985 GGCATCGGAC
55995 TAGCAAATAATA
1 TAGCAAATAATA
56007 TAGCAAATAATA
1 TAGCAAATAATA
56019 TAGCAA
1 TAGCAA
56025 GTGCTCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (12 bp):
TAGCAAATAATA
Found at i:57476 original size:18 final size:19
Alignment explanation
Indices: 57447--57482 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
57437 TTATTTATTT
57447 AAATATTATATTTAATTAC
1 AAATATTATATTTAATTAC
*
57466 AAATA-TATATTTTATTA
1 AAATATTATATTTAATTA
57483 TTATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATATTATATTTAATTAC
Found at i:60424 original size:95 final size:96
Alignment explanation
Indices: 60254--60444 Score: 296
Period size: 95 Copynumber: 2.0 Consensus size: 96
60244 AGATTATAAT
* * *
60254 ATTATATCTATACAACAAAGCTTGAGTTGTCCCTCTAGAGCAATTTGTTAAACGCCTCGGCTTTA
1 ATTATATCTATACAACAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTA
* *
60319 TGGATAATATTCAGCTAGCCTGATAAAGGTG
66 TGGATAATATTCAGCTAACCTAATAAAGGTG
* *
60350 ATTATA-CTATACAATAAAGCTTGAGCTGTCCCTCTA-AGGCAATTGGTTAAACGCCCCGTCTTT
1 ATTATATCTATACAACAAAGCTTGAGCTGTCCCTCTAGA-GCAATTGGTTAAACGCCCCGGCTTT
60413 ATGGATAATATTCAGCTAACCTAATAAAGGTG
65 ATGGATAATATTCAGCTAACCTAATAAAGGTG
60445 TTTACATATT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
94 1 0.01
95 80 0.92
96 6 0.07
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (96 bp):
ATTATATCTATACAACAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTA
TGGATAATATTCAGCTAACCTAATAAAGGTG
Found at i:61510 original size:43 final size:43
Alignment explanation
Indices: 61462--61585 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 43
61452 CCAAGGGGCC
* *
61462 ATCCACGATTTCAACTCCATGACGGAGGATATCGTTCCCACAA
1 ATCCACGATTTTAACTCCATGACGGAGGATATCGTGCCCACAA
* * * *
61505 ATCCACAATTTTAACTCCACGAAGGAGGATATCGTGCCCACAC
1 ATCCACGATTTTAACTCCATGACGGAGGATATCGTGCCCACAA
* ** *
61548 ATCCACGATTTTAACTTCATGACTAAGGATATCATGCC
1 ATCCACGATTTTAACTCCATGACGGAGGATATCGTGCC
61586 AACTCTAGAT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (43 bp):
ATCCACGATTTTAACTCCATGACGGAGGATATCGTGCCCACAA
Found at i:61956 original size:84 final size:83
Alignment explanation
Indices: 61825--62619 Score: 755
Period size: 84 Copynumber: 9.5 Consensus size: 83
61815 GATATCGTAT
* * * * *
61825 TCATTTGCAGCATAGCTCAAAGCTAGAAGAGTTATCTGCCACAAAAAGACCTTCGAGTTCAACTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAC-CAAAGACCTTCGAGTTCGACTA
* * * *
61890 CGTTCAGCTCCATGGCATA
65 CGCTCAGCTCGAGGGCACA
* *
61909 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTACCACCAAAAGACCTTCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACC-AAAGACCTTCGAGTTCGACTA
*
61974 CACTCAGCTTCGAGGGCACA
65 CGCTCAGC-TCGAGGGCACA
* * * * * *
61994 TCATTTGTAGCATAACTCAAGGCTAGAAGAGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACCAAAGACCTTCGAGTTCGACTAC
* * *
62059 GCTCAACTCAAAGGCACA
66 GCTCAGCTCGAGGGCACA
* * * * * * *
62077 TCATTTGCAGCATAGCTTATGTCGAGAAGGGCTATCTGCCACCAAAAGACCTTCAAGTTTGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACC-AAAGACCTTCGAGTTCGACTA
* *
62142 CACTCAGCTTCGAGGGTACA
65 CGCTCAGC-TCGAGGGCACA
* * * * * *
62162 TCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACCAAAGACCTTCGAGTTCGACTAC
* * *
62227 GCTCACCTCAAAGGCACA
66 GCTCAGCTCGAGGGCACA
** * * * *
62245 TCATTTGCAGCATAGCTTGAGTCGAGAAGGGCTATCTGCCAACCAAGGACCTTCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCC-ACCAAAGACCTTCGAGTTCGACTA
* *
62310 CACTCAGCTTCGAGGGCACG
65 CGCTCAGC-TCGAGGGCACA
* ** * * * * * *
62330 TCATTTTCAATATAACTCAAGGCTAGAAGGGTTATCTACAAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACCAAAGACCTTCGAGTTCGACTAC
* * *
62395 GCTCAGCCCAAAGGCACA
66 GCTCAGCTCGAGGGCACA
* * * * * *
62413 TCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAATACCTTCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCC-ACCAAAGACCTTCGAGTTCGACTA
* *
62478 CACTCAGCTTCGAGGGCAAA
65 CGCTCAGC-TCGAGGGCACA
* * * * * *
62498 TCATTTGCA-CTATAACTCAAGGCTAAAAGGGTTATCTACTAACCAAAGACATTCGAGTTCGACT
1 TCATTTGCAGC-ATAGCTCAAGGCTAGAAGGGCTATCTGC-CACCAAAGACCTTCGAGTTCGACT
* * ** *
62562 ACGCTCAGCCCCAATGTACA
64 ACGCTCAGCTCGAGGGCACA
* * *
62582 TCATTTACAGTATAGCTCAAGGCAAGAAGGGCTATCTG
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTG
62620 TCAATAAAAT
Statistics
Matches: 561, Mismatches: 139, Indels: 22
0.78 0.19 0.03
Matches are distributed among these distances:
83 119 0.21
84 254 0.45
85 188 0.34
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (83 bp):
TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCACCAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCGAGGGCACA
Found at i:62107 original size:168 final size:168
Alignment explanation
Indices: 61825--62619 Score: 1074
Period size: 168 Copynumber: 4.7 Consensus size: 168
61815 GATATCGTAT
* * * * * **
61825 TCATTTGCAGCATAGCTCAAAGCTAGAAGAGTTATCTGCCACAAAAAGACCTTCGAGTTCAACTA
1 TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCA-ACAAAGACCTTCGAGTTTGACTA
* * * * * * * *
61890 CGTTCAGCTCCATGGCATATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTACC-ACCAA
65 CGCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACC-A
61954 AAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
129 AAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
* * *
61994 TCATTTGTAGCATAACTCAAGGCTAGAAGAGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
* *
62059 GCTCAACTCAAAGGCACATCATTTGCAGCATAGCTTATGTCGAGAAGGGCTATCTGCC-ACCAAA
66 GCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACC-AA
* * *
62123 AGACCTTCAAGTTTGATTACACTCAGCTTCGAGGGTACA
130 AGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
*
62162 TCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
* * *
62227 GCTCACCTCAAAGGCACATCATTTGCAGCATAGCTTGAGTCGAGAAGGGCTATCTGCCAACCAAG
66 GCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAA
*
62292 GACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACG
131 GACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
* * * *
62330 TCATTTTCAATATAACTCAAGGCTAGAAGGGTTATCTACAAACAAAGACCTTCGAGTTTGACTAC
1 TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
* *
62395 GCTCAGCCCAAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAA
66 GCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAA
* *
62460 TACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCAAA
131 GACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
* * * * *
62498 TCATTTGC-ACTATAACTCAAGGCTAAAAGGGTTATCTACTAACCAAAGACATTCGAGTTCGACT
1 TCATTTGCAAC-ATAACTCAAGGCTAGAAGGGTTATCTGCCAA-CAAAGACCTTCGAGTTTGACT
* * * * * * * * *
62562 ACGCTCAGCCCCAATGTACATCATTTACAGTATAGCTCAAGGCAAGAAGGGCTATCTG
64 ACGCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG
62620 TCAATAAAAT
Statistics
Matches: 565, Mismatches: 58, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
167 1 0.00
168 455 0.81
169 109 0.19
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (168 bp):
TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTTGACTAC
GCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAA
GACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
Found at i:63287 original size:43 final size:43
Alignment explanation
Indices: 63240--63373 Score: 169
Period size: 43 Copynumber: 3.1 Consensus size: 43
63230 TATATATATA
** * **
63240 TTATTATATATACGCGTTACATATGATTTTACATTAACTTCTT
1 TTATTATATATACAAGTTACATATGAGTACACATTAACTTCTT
* * *
63283 TTATTATATATACAAGTTACATATTAGTACATATTAACTTGTT
1 TTATTATATATACAAGTTACATATGAGTACACATTAACTTCTT
* * *
63326 TTATTATATATACAAGTTACATATTAGTACATATTAACTTGTT
1 TTATTATATATACAAGTTACATATGAGTACACATTAACTTCTT
63369 TTATT
1 TTATT
63374 TGGATACATT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (43 bp):
TTATTATATATACAAGTTACATATGAGTACACATTAACTTCTT
Found at i:63330 original size:23 final size:23
Alignment explanation
Indices: 63304--63373 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 23
63294 ACAAGTTACA
63304 TATTAGTACATATTAACTTGTTT
1 TATTAGTACATATTAACTTGTTT
* * * ***
63327 TATTA-TATATA-CAAGTT-ACA
1 TATTAGTACATATTAACTTGTTT
63347 TATTAGTACATATTAACTTGTTT
1 TATTAGTACATATTAACTTGTTT
63370 TATT
1 TATT
63374 TGGATACATT
Statistics
Matches: 32, Mismatches: 12, Indels: 6
0.64 0.24 0.12
Matches are distributed among these distances:
20 5 0.16
21 9 0.28
22 9 0.28
23 9 0.28
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (23 bp):
TATTAGTACATATTAACTTGTTT
Found at i:64594 original size:50 final size:49
Alignment explanation
Indices: 64530--64624 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 49
64520 TATATTTAAT
64530 TATAAATATATTTTA-TTATTATTATT-ATTTCTTTTTCATCATTATTCATA
1 TATAAATATATTTTACTT-TTATT-TTGATTTCTTTTT-ATCATTATTCATA
* * * *
64580 TATATATATTTTTTACTTTTATTTTGTTTTCTTTTTATTATTATT
1 TATAAATATATTTTACTTTTATTTTGATTTCTTTTTATCATTATT
64625 ATTATTATCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
49 10 0.26
50 27 0.69
51 2 0.05
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.66
Consensus pattern (49 bp):
TATAAATATATTTTACTTTTATTTTGATTTCTTTTTATCATTATTCATA
Found at i:64694 original size:9 final size:9
Alignment explanation
Indices: 64657--64814 Score: 50
Period size: 10 Copynumber: 16.1 Consensus size: 9
64647 CTTTTGTTTG
*
64657 TTTTACTTA
1 TTTTATTTA
64666 TTTTATTTTA
1 TTTTA-TTTA
*
64676 TTTTAATTA
1 TTTTATTTA
*
64685 TTTTGTTTA
1 TTTTATTTA
64694 --TTATTTA
1 TTTTATTTA
*
64701 TATGGTATTTA
1 T-T-TTATTTA
* *
64712 TCTTGTTTA
1 TTTTATTTA
* * *
64721 CCTTTCTTTT
1 -TTTTATTTA
64731 TTATTACCTTTA
1 TT-TTA--TTTA
64743 TTTTATTTTA
1 TTTTA-TTTA
64753 TTTTATACCTATA
1 TTTTAT---T-TA
*
64766 TTTCATTTA
1 TTTTATTTA
*
64775 TTTCATTTA
1 TTTTATTTA
*
64784 TTTTCTATTTT
1 -TTT-TATTTA
*
64795 TTTTATCTTT
1 TTTTAT-TTA
64805 TTTTATTTA
1 TTTTATTTA
64814 T
1 T
64815 ATTTTATCTC
Statistics
Matches: 112, Mismatches: 21, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
7 6 0.05
9 39 0.35
10 40 0.36
11 14 0.12
12 6 0.05
13 7 0.06
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.70
Consensus pattern (9 bp):
TTTTATTTA
Found at i:64767 original size:23 final size:23
Alignment explanation
Indices: 64729--64777 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
64719 TACCTTTCTT
* *
64729 TTTTATTACCTTTATTTTATTTTA
1 TTTTATTACCTATATTTCA-TTTA
64753 TTTTA-TACCTATATTTCATTTA
1 TTTTATTACCTATATTTCATTTA
64775 TTT
1 TTT
64778 CATTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 11 0.48
24 5 0.22
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATTACCTATATTTCATTTA
Found at i:66871 original size:47 final size:47
Alignment explanation
Indices: 66802--66892 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
66792 ATAGAATAAG
* *
66802 TGTTGAATCAACCATTCCACTACATAACTAACTTGCACACGAAGAAA
1 TGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAGAAA
66849 TGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
1 TGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
66893 GAAAATGCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.22
Consensus pattern (47 bp):
TGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAGAAA
Found at i:68706 original size:6 final size:6
Alignment explanation
Indices: 68695--68742 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
68685 CCTTATGTTT
* *
68695 GGGCTG GGGCTG GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA
1 GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA
68743 ACACCCCACA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.12, C:0.17, G:0.54, T:0.17
Consensus pattern (6 bp):
GGGCTA
Found at i:71076 original size:20 final size:20
Alignment explanation
Indices: 71051--71096 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
71041 GTTGAAATGA
71051 TTATTTTCAAAGTTTTG-GTT
1 TTATTTTCAAA-TTTTGTGTT
71071 TTA-TTTCAAATTTTGTGTT
1 TTATTTTCAAATTTTGTGTT
*
71090 TTCTTTT
1 TTATTTT
71097 ATATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 12 0.52
20 6 0.26
ACGTcount: A:0.17, C:0.07, G:0.11, T:0.65
Consensus pattern (20 bp):
TTATTTTCAAATTTTGTGTT
Found at i:71966 original size:43 final size:44
Alignment explanation
Indices: 71894--71976 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
71884 GGTATCGACA
*
71894 CTACTTTACACAGTAGTGTCCATACCATGATCATAGTATCAATT
1 CTACTTTACACAGTAGTATCCATACCATGATCATAGTATCAATT
* *
71938 CTACTTTACA-AGTAGTATCGATTCCATGATCATAGTATC
1 CTACTTTACACAGTAGTATCCATACCATGATCATAGTATC
71977 GATACTGGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 26 0.72
44 10 0.28
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (44 bp):
CTACTTTACACAGTAGTATCCATACCATGATCATAGTATCAATT
Found at i:73315 original size:89 final size:90
Alignment explanation
Indices: 73153--73348 Score: 295
Period size: 89 Copynumber: 2.2 Consensus size: 90
73143 CCAGAACTGC
* * * * *
73153 GTCCGTAAGGCTTACCCTATGCACCCAGCAAAGGGAGCCAACCTAAGGATATTACTTGGGACCTA
1 GTCCGTAAGGCTTACCCTAAGCACACAACAAAGGGAACCAACCTAAGGATATGACTTGGGACCTA
73218 TGGGCCTACCCAAGGGTATCCTTAG
66 TGGGCCTACCCAAGGGTATCCTTAG
* * * *
73243 GTCCGCAAGG-TTACCCTAAGCACACAACAAATGGAACCAACCTAAGGATATGCCTTGGGGCCTA
1 GTCCGTAAGGCTTACCCTAAGCACACAACAAAGGGAACCAACCTAAGGATATGACTTGGGACCTA
73307 TGGGCCTACCCAAGGGTATCCTTAG
66 TGGGCCTACCCAAGGGTATCCTTAG
73332 GTCCGTAAGGACTTACC
1 GTCCGTAAGG-CTTACC
73349 AGCTGGATCA
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
89 80 0.85
90 9 0.10
91 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (90 bp):
GTCCGTAAGGCTTACCCTAAGCACACAACAAAGGGAACCAACCTAAGGATATGACTTGGGACCTA
TGGGCCTACCCAAGGGTATCCTTAG
Found at i:73845 original size:97 final size:96
Alignment explanation
Indices: 73686--73895 Score: 253
Period size: 97 Copynumber: 2.2 Consensus size: 96
73676 AAAACCATGG
* * *
73686 TTCATAAACCCGTAAATTCCATGATTCCATAAATCAGGACCAATTCATATTTTCCAGTGAAAACA
1 TTCATAAACCAGTAAATTCCATGATTCCATAAATCAGGAACAATTCACATTTTCCAGTGAAAAC-
* *
73751 GGAAACT-CGATAACACATTCCAAGTACCATAA
65 GGAAA-TGAGATAACACATACCAAGTACCATAA
* * *
73783 TTCATAAACCAGTAAATTCCATGATTCCATACATCATGAACAATTCACAGTTTTCGA-TGAAAAC
1 TTCATAAACCAGTAAATTCCATGATTCCATAAATCAGGAACAATTCACA-TTTTCCAGTGAAAAC
* * ** * *
73847 TGAAATGAGATATCACATACCATTTGCCATGA
65 GGAAATGAGATAACACATACCAAGTACCATAA
73879 TTCATAAACCAGTAAAT
1 TTCATAAACCAGTAAAT
73896 CAATACTTTC
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
95 1 0.01
96 39 0.40
97 51 0.53
98 6 0.06
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (96 bp):
TTCATAAACCAGTAAATTCCATGATTCCATAAATCAGGAACAATTCACATTTTCCAGTGAAAACG
GAAATGAGATAACACATACCAAGTACCATAA
Found at i:75796 original size:20 final size:18
Alignment explanation
Indices: 75757--75797 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
75747 TCGACTCAGC
*
75757 TCAGCTTGGCTCGGCGGT
1 TCAGCTTGGCTCGCCGGT
75775 TCAGCTTGGCTCAGACCGGT
1 TCAGCTTGGCTC-G-CCGGT
75795 TCA
1 TCA
75798 ACCAGTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 1 0.05
20 7 0.35
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (18 bp):
TCAGCTTGGCTCGCCGGT
Found at i:78294 original size:6 final size:6
Alignment explanation
Indices: 78283--78946 Score: 1203
Period size: 6 Copynumber: 112.5 Consensus size: 6
78273 TATTTAAATA
78283 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78331 ATATTAT A--TAT ATTTAT ATTTAT ATTTAT ATTTATT ATATTAT A-TTAT
1 AT-TTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTA-T AT-TTAT ATTTAT
78379 ATTTAT ATTTAT A-TTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78426 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78474 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78522 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78570 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT-T ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78617 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78665 -TTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT A-TT-T ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78710 ATTTAT A-TT-T ATTTAT ATTTAT ATTTAT ATTTAT A-TTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78755 A-TTAT ATTTAT ATTTAT ATTTAT A-TT-T ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78800 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78848 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78896 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
78944 ATT
1 ATT
78947 AGGTAAGTTA
Statistics
Matches: 641, Mismatches: 0, Indels: 34
0.95 0.00 0.05
Matches are distributed among these distances:
4 10 0.02
5 42 0.07
6 576 0.90
7 10 0.02
8 3 0.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTAT
Found at i:84475 original size:62 final size:61
Alignment explanation
Indices: 84374--84496 Score: 167
Period size: 62 Copynumber: 2.0 Consensus size: 61
84364 GCTAACCCTA
* * * * *
84374 AAGCATAAACAATTTCAAATTATTGGCTTCGAAGCAGTAGGCTT-TACGTTCGATAATTTGC
1 AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTCT-CATTCAATAATTTGC
*
84435 AAGCTTAAACAATCTCAAATCATTTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
1 AAGCATAAACAATCTCAAATCA-TTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
84497 TTTCAATCTT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
61 19 0.35
62 34 0.63
63 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (61 bp):
AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
Found at i:89906 original size:174 final size:174
Alignment explanation
Indices: 89673--89995 Score: 445
Period size: 174 Copynumber: 1.9 Consensus size: 174
89663 CAGAAATTTC
* * * * *
89673 TAGAATAAGTGTTTTTTTTAATAATCTTGGTATATACAAGGCAATATCTTTTCGAAGATAAATCT
1 TAGAATAAGTGTTTTTTTTAATAATCTGGGTATATACAAGACAATATATGTTAGAAGATAAATCT
* * * * *
89738 CAATCTTTCAACATTGAACGCTCACATCCTTGGCATTTATGGTGCTCGAATC-CGAATCTTCAGA
66 CAACCTTTCAACATTAAACGCTCACACCCTTGGCATTTATAGTGCTCGAA-CACGAATCTTAAGA
*
89802 AATAAAAACAATTCTTTTATCACAAATGTCACTTGGTTCGTGCTA
130 AACAAAAACAATTCTTTTATCACAAATGTCACTTGGTTCGTGCTA
* *
89847 TAGAATAAGTG-TTTTTTTAATAATCTAGGGTA-AGTACAAGATAATATATGTTAGAAGATAACT
1 TAGAATAAGTGTTTTTTTTAATAATCT-GGGTATA-TACAAGACAATATATGTTAGAAGATAAAT
* * *
89910 CTCAACCTTTCAACATTAAACGCTCACACCCTTGTCATTTATAGTGCTCGAACACGGATTTTAAG
64 CTCAACCTTTCAACATTAAACGCTCACACCCTTGGCATTTATAGTGCTCGAACACGAATCTTAAG
*
89975 AAACAACAACAATTCTTTTAT
129 AAACAAAAACAATTCTTTTAT
89996 GAGGTAGATC
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
173 17 0.13
174 112 0.87
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35
Consensus pattern (174 bp):
TAGAATAAGTGTTTTTTTTAATAATCTGGGTATATACAAGACAATATATGTTAGAAGATAAATCT
CAACCTTTCAACATTAAACGCTCACACCCTTGGCATTTATAGTGCTCGAACACGAATCTTAAGAA
ACAAAAACAATTCTTTTATCACAAATGTCACTTGGTTCGTGCTA
Found at i:90097 original size:47 final size:47
Alignment explanation
Indices: 90028--90121 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
90018 GCTCTAGAAT
* *
90028 AAGTGTTGAATCAACCATTCCACTACATAACTAACCTGCACACGAAG
1 AAGTGTTGAATCAACCATTCCACTACAGAACAAACCTGCACACGAAG
90075 AAGTGTTGAATCAACCATTCCACTACAGAACAAACCTGCACACGAAG
1 AAGTGTTGAATCAACCATTCCACTACAGAACAAACCTGCACACGAAG
90122 GAAAATGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (47 bp):
AAGTGTTGAATCAACCATTCCACTACAGAACAAACCTGCACACGAAG
Found at i:90409 original size:6 final size:6
Alignment explanation
Indices: 90398--90437 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
90388 CCTTATGTTT
**
90398 GGGCTA GGGCTA GGGCTA GGGCTA GGAATA GGGCTA GGGC
1 GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGGC
90438 GTTTGACTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.20, C:0.15, G:0.50, T:0.15
Consensus pattern (6 bp):
GGGCTA
Found at i:91384 original size:2 final size:2
Alignment explanation
Indices: 91379--91409 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
91369 ATTAAAAAAT
*
91379 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91410 TAAAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:92731 original size:2 final size:2
Alignment explanation
Indices: 92724--92757 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
92714 AAGTGACATT
92724 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92758 TATTATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:92761 original size:8 final size:9
Alignment explanation
Indices: 92723--92822 Score: 61
Period size: 9 Copynumber: 11.4 Consensus size: 9
92713 CAAGTGACAT
92723 TTATATATA
1 TTATATATA
92732 -TATATATA
1 TTATATATA
92740 -TATATATA
1 TTATATATA
92748 -TATATTATA
1 TTATA-TATA
92757 TTAT-TATTA
1 TTATATA-TA
* *
92766 TTATAGACA
1 TTATATATA
* *
92775 TAATAAATA
1 TTATATATA
* *
92784 TAATAAATA
1 TTATATATA
92793 TTATAT-TA
1 TTATATATA
92801 TTAT-TATTA
1 TTATATA-TA
92810 TTAT-TATTA
1 TTATATA-TA
92819 TTAT
1 TTAT
92823 TCTTAATAGT
Statistics
Matches: 78, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
7 1 0.01
8 28 0.36
9 45 0.58
10 4 0.05
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (9 bp):
TTATATATA
Found at i:92802 original size:3 final size:3
Alignment explanation
Indices: 92791--92823 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
92781 ATATAATAAA
92791 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
92824 CTTAATAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:103002 original size:2 final size:2
Alignment explanation
Indices: 102995--103028 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
102985 TATCTTATCC
102995 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
103029 GTCACATGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107649 original size:30 final size:30
Alignment explanation
Indices: 107615--107747 Score: 230
Period size: 30 Copynumber: 4.4 Consensus size: 30
107605 CTCGAAGGAC
*
107615 CTATCTAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
107645 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
*
107675 CTATCCAGAGGTCATAAAGATCCTCAGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
107705 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
107735 CTGTCCATAGGTC
1 CTATCCAGAGGTC
107748 CCGAAGAACC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 98 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:110979 original size:3 final size:3
Alignment explanation
Indices: 110971--111045 Score: 118
Period size: 3 Copynumber: 25.3 Consensus size: 3
110961 TGAAGCCTGC
110971 AAT AAT AAT AAT AA- AATT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
111016 AAT AAT AAT AAT -AT AAT TAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
111046 GCGGTAATAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
2 4 0.06
3 61 0.91
4 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:113547 original size:134 final size:132
Alignment explanation
Indices: 112951--113844 Score: 804
Period size: 134 Copynumber: 6.7 Consensus size: 132
112941 TTATGATAAG
* * * * * *
112951 GGATATGTTTCGCTGTC-ACT-TAGGGAATATTAGATCTG-GGATGTTGATCCATTCTGTTGTTA
1 GGATATGTTTCGCT-TCTTCTAAAGGGAATATCAGATCTGAGGATGTTGATCCATTCCGCTGTCA
* * * * *
113013 CTTAGGGAAAATTGAATCGAGGTAGACTTGTTCCGCTATCACTCAGAGAATATCAAATCTTGAAA
65 CTCA-GGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAA
113078 GAA-A
129 -AAGA
* * * ** * * * *
113082 TGAATTTGTTTTGCTTCTTCTGGAGGGAATATCAGATAT-AGGGTTGTTGATCCATTTCGTTGTC
1 -GGATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCTGA-GGATGTTGATCCATTCCGCTGTC
* *
113146 ACTCAGGAAAGATTAAATCAGGGTAGACTTGTTCC-CTGTCACTCAGGGAATATCAAATCTTGAA
64 ACTCAGG-AAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAA
*
113210 AGAGA
128 AAAGA
* * * * * * *
113215 TGGATATGTTTCGCTTCTTCTAAAAGGAATATCAAATATGGGGGA-GTTGGTCTATTCCGCTATC
1 -GGATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCT-GAGGATGTTGATCCATTCCGCTGTC
* * * * * * *
113279 ACTCAGAGAAGATTGAATAGGGGAAAACTTGTTTCGTTGTCACTCATGGAATATAAAATCTTGAA
64 ACTCAG-GAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAA
*
113344 AGAGA
128 AAAGA
* * * * *
113349 -GATCTGTTTCACTTCTTCTGAAGGGAATATCAGATCTGGGGGA-GTTGATCCATTTCGCTGTCA
1 GGATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCT-GAGGATGTTGATCCATTCCGCTGTCA
* * * *
113412 CTCATGGAAGATTGAATCGTGGTAAACTTGTTCCGCTGTTACTCAGGTAATATCAAATCTTGAAA
65 CTCA-GGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAA
113477 AAGA
129 AAGA
* * * *
113481 GGTATATGTTTCGCTTCATCTAAAGGGAATATCAGATCTGAAGACGTTGATCCATTCCGCTATCA
1 GG-ATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCTGAGGATGTTGATCCATTCCGCTGTCA
* * * * *
113546 CTCAGGAAAGATTAAATTGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATGTCAAATCTTGAAA
65 CTCAGG-AAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAA
* *
113611 TAGGG
129 -AAGA
* * ** * * * *
113616 GGATTTGTTCCGCTTCATT-TTGAGGGAATATCATATCTGGGGATATTGATCCATTCCGCTATCA
1 GGATATGTTTCGCTTC-TTCTAAAGGGAATATCAGATCTGAGGATGTTGATCCATTCCGCTGTCA
* * * * *
113680 CTTAGGGAAGATTGAATTGGGGCAGACTTGTTCCGCTGACACTCAGGGGATATCAAATCTTGAAA
65 CTCA-GGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAA
113745 GAA-A
129 -AAGA
* * * * * **
113749 GGGATATATTTCGCTTCTTCTTAAGGGAATATCAGATAT-AGAGACGTTGATTCATTTAGCTGTC
1 -GGATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCTGAG-GATGTTGATCCATTCCGCTGTC
* *
113813 ACTCATGGAAGATTGAATCAGGGCAGACTTGT
64 ACTCA-GGAAGATTGAATCGGGGTAGACTTGT
113845 CAAATCTTGA
Statistics
Matches: 624, Mismatches: 117, Indels: 40
0.80 0.15 0.05
Matches are distributed among these distances:
131 2 0.00
132 124 0.20
133 128 0.21
134 363 0.58
135 7 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (132 bp):
GGATATGTTTCGCTTCTTCTAAAGGGAATATCAGATCTGAGGATGTTGATCCATTCCGCTGTCAC
TCAGGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAA
GA
Found at i:113742 original size:268 final size:266
Alignment explanation
Indices: 112951--113844 Score: 905
Period size: 268 Copynumber: 3.4 Consensus size: 266
112941 TTATGATAAG
* * * * * * * * *
112951 GGATATGTTTCGCTGTCA-CT-TAGGGAATATTAGATCTG-GGATGTTGATCCATTCTGTTGTTA
1 GGATATGTTTCGCT-TCATCTAAAGGGAATATCAGATATGAAGACGTTGATCCATTCCGCTATCA
* * * * * *
113013 CTTAGGGAAA-ATTGAATCGAGGTAGACTTGTTCCGCTATCACTCAGAGAATATCAAATCTTGAA
65 CTCAGGGAAAGATTGAATCGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATATCAAATCTTGAA
* * * * * * * * *
113077 AGAAATGAATTTGTTTTGCTTCTTCTGGAGGGAATATCAGATATAGGGTTGTTGATCCATTTCGT
130 A-AGAGGGATTTGTTTCGCTTCTT-TTGAGGGAATATCAGATCTGGGGATGTTGATCCATTTCGC
* * *
113142 TGTCACTCAGGAAAGATTAAATCAGGGTAGACTTGTTCC-CTGTCACTCAGGGAATATCAAATCT
193 TGTCACTCAGGGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCT
*
113206 TGAAAGAGA
258 TGAAAAAGA
* * * ** * *
113215 TGGATATGTTTCGCTTCTTCTAAAAGGAATATCAAATATGGGGGA-GTTGGTCTATTCCGCTATC
1 -GGATATGTTTCGCTTCATCTAAAGGGAATATCAGATAT-GAAGACGTTGATCCATTCCGCTATC
* * * * * * *
113279 ACTCAGAG-AAGATTGAATAGGGGAAAACTTGTTTCGTTGTCACTCATGGAATATAAAATCTTG-
64 ACTCAGGGAAAGATTGAATCGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATATCAAATCTTGA
* * * *
113342 AAAGAGAGATCTGTTTCACTTCTTCTGAAGGGAATATCAGATCTGGGGGA-GTTGATCCATTTCG
129 AAAGAGGGATTTGTTTCGCTTCTTTTG-AGGGAATATCAGATCT-GGGGATGTTGATCCATTTCG
* * * * *
113406 CTGTCACTCATGGAAGATTGAATCGTGGTAAACTTGTTCCGCTGTTACTCAGGTAATATCAAATC
192 CTGTCACTCAGGGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATC
113471 TTGAAAAAGA
257 TTGAAAAAGA
*
113481 GGTATATGTTTCGCTTCATCTAAAGGGAATATCAGATCTGAAGACGTTGATCCATTCCGCTATCA
1 GG-ATATGTTTCGCTTCATCTAAAGGGAATATCAGATATGAAGACGTTGATCCATTCCGCTATCA
* * *
113546 CTCA-GGAAAGATTAAATTGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATGTCAAATCTTGAA
65 CTCAGGGAAAGATTGAATCGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATATCAAATCTTGAA
* * * * *
113610 ATAGGGGGATTTGTTCCGCTTCATTTTGAGGGAATATCATATCTGGGGATATTGATCCATTCCGC
130 A-AGAGGGATTTGTTTCGCTTC-TTTTGAGGGAATATCAGATCTGGGGATGTTGATCCATTTCGC
* * * * * *
113675 TATCACTTAGGGAAGATTGAATTGGGGCAGACTTGTTCCGCTGACACTCAGGGGATATCAAATCT
193 TGTCACTCAGGGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCT
113740 TGAAAGAA-A
258 TGAAA-AAGA
* * * * ** *
113749 GGGATATATTTCGCTTCTTCTTAAGGGAATATCAGATAT-AGAGACGTTGATTCATTTAGCTGTC
1 -GGATATGTTTCGCTTCATCTAAAGGGAATATCAGATATGA-AGACGTTGATCCATTCCGCTATC
* *
113813 ACTCATGG-AAGATTGAATCAGGGCAGACTTGT
64 ACTCAGGGAAAGATTGAATCGGGGCAGACTTGT
113845 CAAATCTTGA
Statistics
Matches: 516, Mismatches: 94, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
264 3 0.01
265 99 0.19
266 151 0.29
267 70 0.14
268 183 0.35
269 10 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (266 bp):
GGATATGTTTCGCTTCATCTAAAGGGAATATCAGATATGAAGACGTTGATCCATTCCGCTATCAC
TCAGGGAAAGATTGAATCGGGGCAGACTTGTTTCGCTGTCACTCAGGGAATATCAAATCTTGAAA
AGAGGGATTTGTTTCGCTTCTTTTGAGGGAATATCAGATCTGGGGATGTTGATCCATTTCGCTGT
CACTCAGGGAAGATTGAATCGGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGA
AAAAGA
Found at i:113929 original size:112 final size:112
Alignment explanation
Indices: 113732--113934 Score: 257
Period size: 112 Copynumber: 1.8 Consensus size: 112
113722 TCAGGGGATA
* *
113732 TCAAATCTTGAAAGAAAGGGATATATTTCGCTTCTTCTTAAGGGAATATCAGATATAGAGACGTT
1 TCAAATCTTGAAAGAAAAGGATATATTTCGCTTCTTCTTAAGGGAATATCAGATATAGAGACATT
* * *
113797 GATTCATTTAGCTGTCACTCATGGAAGATTGAATCAGGGCAGACTTG
66 GATCCATTCAGCTGTCACTCAAGGAAGATTGAATCAGGGCAGACTTG
* * * * * * *
113844 TCAAATCTTGAAAGAAAATGATATGTTTCGCTTTTTC-TAGAGGGAATATCAGATCTGGGGATAT
1 TCAAATCTTGAAAGAAAAGGATATATTTCGCTTCTTCTTA-AGGGAATATCAGATATAGAGACAT
*
113908 TGATCCATTCCA-TTGTCACTCAAGGAA
65 TGATCCATT-CAGCTGTCACTCAAGGAA
113935 TATCATATCT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
111 2 0.03
112 73 0.96
113 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (112 bp):
TCAAATCTTGAAAGAAAAGGATATATTTCGCTTCTTCTTAAGGGAATATCAGATATAGAGACATT
GATCCATTCAGCTGTCACTCAAGGAAGATTGAATCAGGGCAGACTTG
Found at i:117800 original size:18 final size:19
Alignment explanation
Indices: 117779--117822 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
117769 GTTGTTTTTA
*
117779 AAATAAAAGATAAA-AACT
1 AAATAAAAGAAAAATAACT
*
117797 AAATAAAAGAAAAATAATT
1 AAATAAAAGAAAAATAACT
117816 AAATAAA
1 AAATAAA
117823 TAATCTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (19 bp):
AAATAAAAGAAAAATAACT
Found at i:123700 original size:7 final size:6
Alignment explanation
Indices: 123658--123714 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
123648 AAAAAATAAT
* * *
123658 AAAATA AAAATA ATAATA AAATAAA GAAAATA AAAATTA AAAATA AATAAGA
1 AAAATA AAAATA AAAATA AAA-ATA -AAAATA AAAA-TA AAAATA AA-AATA
123710 AAAAT
1 AAAAT
123715 TAAATAAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
6 23 0.56
7 15 0.37
8 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:123707 original size:17 final size:15
Alignment explanation
Indices: 123616--123703 Score: 65
Period size: 15 Copynumber: 5.5 Consensus size: 15
123606 GATGAAGTTG
123616 AAAAATAA-AATAAAT
1 AAAAATAATAA-AAAT
* *
123631 AAATATAATTTAAAAAGA
1 AAAAATAA--TAAAAA-T
123649 AAAAATAAT-AAAAT
1 AAAAATAATAAAAAT
123663 AAAAATAATAATAAAAT
1 AAAAATAAT-A-AAAAT
123680 AAAGAA-AATAAAAATT
1 AAA-AATAATAAAAA-T
123696 AAAAATAA
1 AAAAATAA
123704 ATAAGAAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
14 9 0.15
15 17 0.29
16 8 0.14
17 14 0.24
18 11 0.19
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAAAATAATAAAAAT
Found at i:123714 original size:26 final size:26
Alignment explanation
Indices: 123616--123712 Score: 83
Period size: 26 Copynumber: 3.7 Consensus size: 26
123606 GATGAAGTTG
* **
123616 AAAAATAAAATAAA-TAAATATAATTT
1 AAAAATAAAATAAAGAAAATA-AAAAT
* * *
123642 AAAAAGAAAAAATAATAAAATAAAAAT
1 AAAAATAAAATA-AAGAAAATAAAAAT
*
123669 AATAATAAAATAAAGAAAATAAAAATT
1 AAAAATAAAATAAAGAAAATAAAAA-T
123696 AAAAAT-AAAT-AAGAAAA
1 AAAAATAAAATAAAGAAAA
123713 ATTAAATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
25 7 0.12
26 26 0.45
27 20 0.34
28 5 0.09
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (26 bp):
AAAAATAAAATAAAGAAAATAAAAAT
Found at i:123723 original size:22 final size:20
Alignment explanation
Indices: 123689--123729 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
123679 TAAAGAAAAT
123689 AAAAATTAAAAATAAATAAG
1 AAAAATTAAAAATAAATAAG
123709 AAAAATTAAATAAATAAATAA
1 AAAAATT-AA-AAATAAATAA
123730 TCTAAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 10 0.53
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAATTAAAAATAAATAAG
Found at i:124362 original size:24 final size:24
Alignment explanation
Indices: 124326--124433 Score: 75
Period size: 24 Copynumber: 4.6 Consensus size: 24
124316 AAATCCTAAT
* *
124326 TAAAACACTTAAAACTATTTAAAC
1 TAAAATACCTAAAACTATTTAAAC
* *
124350 TAAAATACCTAAAAATAATATTCAAAA
1 TAAAATACCTAAAACT-AT-TT-AAAC
* * * *
124377 TAATAT-TCTAAATC-A--T-AAT
1 TAAAATACCTAAAACTATTTAAAC
124396 TAAAATA-CTAAAACTATTTAAAC
1 TAAAATACCTAAAACTATTTAAAC
124419 TAAAATACCTAAAAC
1 TAAAATACCTAAAAC
124434 AAAGATAAGA
Statistics
Matches: 63, Mismatches: 12, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
19 13 0.21
20 1 0.02
21 1 0.02
22 1 0.02
23 9 0.14
24 21 0.33
25 2 0.03
26 7 0.11
27 8 0.13
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (24 bp):
TAAAATACCTAAAACTATTTAAAC
Found at i:124394 original size:15 final size:12
Alignment explanation
Indices: 124361--124402 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
124351 AAAATACCTA
124361 AAAATAATATTC
1 AAAATAATATTC
124373 AAAATAATATTC
1 AAAATAATATTC
* *
124385 TAAATCATAATT-
1 AAAATAAT-ATTC
124397 AAAATA
1 AAAATA
124403 CTAAAACTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 22 0.88
13 3 0.12
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATAATATTC
Found at i:124418 original size:69 final size:73
Alignment explanation
Indices: 124315--124501 Score: 247
Period size: 75 Copynumber: 2.6 Consensus size: 73
124305 TAAAACATCT
* * * *
124315 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT-A-AAA-ATAATAT-TCAAA
1 TAAATCATAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAACAAAGATAAGATATAAAA
*
124376 ATAATATTC
65 ATAATATAC
124385 TAAATCATAATTAAAATACTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATATAAA
1 TAAATCATAATTAAAATACTAAAACTATTTAAACTAAAATACCT--AACAAAGATAAGATATAAA
124450 AATAATATAC
64 AATAATATAC
* *
124460 TAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATA
1 TAAATCATAATTAAAATACTAAAA-CTATTTAAACTAAAATA
124502 AAGATAAAAT
Statistics
Matches: 103, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
69 25 0.24
70 17 0.17
72 1 0.01
73 3 0.03
74 6 0.06
75 34 0.33
76 17 0.17
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.29
Consensus pattern (73 bp):
TAAATCATAATTAAAATACTAAAACTATTTAAACTAAAATACCTAACAAAGATAAGATATAAAAA
TAATATAC
Found at i:124492 original size:19 final size:19
Alignment explanation
Indices: 124456--124493 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
124446 TAAAAATAAT
*
124456 ATACTAAAACTTAATTAAA
1 ATACTAAAACCTAATTAAA
*
124475 ATACTAAAACCTATTTAAA
1 ATACTAAAACCTAATTAAA
124494 CTAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
ATACTAAAACCTAATTAAA
Found at i:128835 original size:3 final size:3
Alignment explanation
Indices: 128829--128872 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
128819 TTAAGCTTGC
*
128829 AAT AAT AAT AAT AA- AAA AAT AAT AAT AAT -AT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
128873 GTGGTAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:128851 original size:17 final size:17
Alignment explanation
Indices: 128829--128872 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
128819 TTAAGCTTGC
128829 AATAATAATAATAAAAA
1 AATAATAATAATAAAAA
* *
128846 AATAATAATAATATAAT
1 AATAATAATAATAAAAA
128863 AATAATAATA
1 AATAATAATA
128873 GTGGTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAATAATAATAAAAA
Found at i:128871 original size:14 final size:14
Alignment explanation
Indices: 128830--128872 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
128820 TAAGCTTGCA
*
128830 ATAATAATAATAAA
1 ATAATAATAATAAT
*
128844 AAAATAATAATAAT
1 ATAATAATAATAAT
128858 ATAATAATAATAAT
1 ATAATAATAATAAT
128872 A
1 A
128873 GTGGTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:132006 original size:13 final size:13
Alignment explanation
Indices: 131980--132016 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
131970 ATTAATATCC
131980 TATTTATA-TTTA
1 TATTTATATTTTA
131992 TATTTATATTTTA
1 TATTTATATTTTA
132005 TAATTTA-ATTTT
1 T-ATTTATATTTT
132017 TTATAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.35
13 10 0.43
14 5 0.22
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTTATATTTTA
Found at i:132020 original size:15 final size:14
Alignment explanation
Indices: 131981--132030 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
131971 TTAATATCCT
131981 ATTTATA-TTTAT-
1 ATTTATATTTTATA
131993 ATTTATATTTTATA
1 ATTTATATTTTATA
*
132007 ATTTAATTTTTTATA
1 ATTT-ATATTTTATA
*
132022 ATTAATATT
1 ATTTATATT
132031 GAGTAAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 7 0.22
13 5 0.16
14 8 0.25
15 12 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTATATTTTATA
Found at i:142632 original size:2 final size:2
Alignment explanation
Indices: 142625--142649 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
142615 TCTTAGAAGT
142625 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
142650 CAAATGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:144227 original size:13 final size:13
Alignment explanation
Indices: 144211--144240 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
144201 TTAATTACGA
*
144211 AAATTAAAAAGTT
1 AAATTAAAAAATT
144224 AAATTAAAAAATT
1 AAATTAAAAAATT
144237 AAAT
1 AAAT
144241 GTTTGATCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AAATTAAAAAATT
Found at i:145590 original size:6 final size:5
Alignment explanation
Indices: 145479--145623 Score: 77
Period size: 5 Copynumber: 27.6 Consensus size: 5
145469 AAAACCAAAA
*
145479 ATAAT ATAAT AATAAT ATAAT ATAAT AT-AT AATAA- ATAGAT A-GAT
1 ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT -ATAAT ATA-AT ATAAT
* * *
145524 ACTAAT AT-AT -TTAT ATAAT ATAAT A-AAT ATGTAT ATACT ATAACAT
1 A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT AT-A-AT
* *
145570 ATAAT ATAAT CATAAT AATAAT TTATAT ATAAT ATGTAATT ATACT ATAAT
1 ATAAT ATAAT -ATAAT -ATAAT ATA-AT ATAAT A--TAA-T ATAAT ATAAT
145621 ATA
1 ATA
145624 TAATACGCAC
Statistics
Matches: 110, Mismatches: 12, Indels: 36
0.70 0.08 0.23
Matches are distributed among these distances:
3 1 0.01
4 16 0.15
5 53 0.48
6 32 0.29
7 6 0.05
8 2 0.02
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:145618 original size:18 final size:18
Alignment explanation
Indices: 145557--145627 Score: 76
Period size: 18 Copynumber: 4.0 Consensus size: 18
145547 TAAATATGTA
*
145557 TATACTATAACATATAA-
1 TATACTATAATATATAAT
*
145574 TATAATCATAATA-ATAATT
1 TATACT-ATAATATATAA-T
*
145593 TATA-TATAATATGTAAT
1 TATACTATAATATATAAT
145610 TATACTATAATATATAAT
1 TATACTATAATATATAAT
145628 ACGCACACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
17 20 0.44
18 21 0.47
19 4 0.09
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (18 bp):
TATACTATAATATATAAT
Found at i:145688 original size:22 final size:22
Alignment explanation
Indices: 145662--145711 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
145652 ACTATATAAC
*
145662 ATATATTATATTTTCAAAAACT
1 ATATATTATATTTTAAAAAACT
* * *
145684 ATATAATATGTTTTAAAAAATT
1 ATATATTATATTTTAAAAAACT
145706 ATATAT
1 ATATAT
145712 ATTATATATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (22 bp):
ATATATTATATTTTAAAAAACT
Found at i:145692 original size:20 final size:21
Alignment explanation
Indices: 145663--145702 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
145653 CTATATAACA
*
145663 TATATTATAT-TTTCAAAAAC
1 TATATAATATGTTTCAAAAAC
*
145683 TATATAATATGTTTTAAAAA
1 TATATAATATGTTTCAAAAA
145703 ATTATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
TATATAATATGTTTCAAAAAC
Found at i:145692 original size:27 final size:27
Alignment explanation
Indices: 145636--145689 Score: 81
Period size: 29 Copynumber: 1.9 Consensus size: 27
145626 ATACGCACAC
145636 TATATTTATTTAAAAAACTATATAACA
1 TATATTTATTTAAAAAACTATATAACA
*
145663 TATATTATATTTTCAAAAACTATATAA
1 TATATT-TA-TTTAAAAAACTATATAA
145690 TATGTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 2 0.08
29 16 0.67
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (27 bp):
TATATTTATTTAAAAAACTATATAACA
Found at i:145778 original size:21 final size:22
Alignment explanation
Indices: 145754--145796 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
145744 GCAATTTTTT
*
145754 ATATGTTTTC-AAAATTATATA
1 ATATATTTTCAAAAATTATATA
145775 ATATATTTTCAAAAATTATATA
1 ATATATTTTCAAAAATTATATA
145797 TTTTCACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATTTTCAAAAATTATATA
Found at i:147605 original size:18 final size:18
Alignment explanation
Indices: 147564--147605 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
147554 TATTTTATTA
147564 ATATTTATGTATGATGTG
1 ATATTTATGTATGATGTG
*
147582 ACATTTATGTATGATGTG
1 ATATTTATGTATGATGTG
*
147600 GTATTT
1 ATATTT
147606 TTTTTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.50
Consensus pattern (18 bp):
ATATTTATGTATGATGTG
Found at i:151370 original size:62 final size:61
Alignment explanation
Indices: 151267--151389 Score: 158
Period size: 62 Copynumber: 2.0 Consensus size: 61
151257 GCTAACCCTA
* * * * * *
151267 AAGCATAAACAATTTCAAATTATTGGCTTCGAAGCATTAGGCTT-TACGTTCGATAATTTGC
1 AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTCT-CATTCAATAATTTGC
*
151328 AAGCTTAAACAATCTCAAATCATTTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
1 AAGCATAAACAATCTCAAATCA-TTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
151390 TTTCAATCTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
61 19 0.36
62 33 0.62
63 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (61 bp):
AAGCATAAACAATCTCAAATCATTGACTTCGAAGCAGTAGGCTTCTCATTCAATAATTTGC
Found at i:156009 original size:47 final size:47
Alignment explanation
Indices: 155940--156033 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
155930 GTTATAGAAT
* *
155940 AAGTGTTGAATCAACCATTCCACTACATAACTAACTTGCACACGAAG
1 AAGTGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
155987 AAGTGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
1 AAGTGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
156034 GAAAATGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (47 bp):
AAGTGTTGAATCAACCATTCCACTACAGAACTAACCTGCACACGAAG
Found at i:156344 original size:6 final size:6
Alignment explanation
Indices: 156329--156361 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
156319 CCTTATGTTT
*
156329 GGGCTG GGGCTA GGGCTA GGGCTA GGGCTA GGG
1 GGGCTA GGGCTA GGGCTA GGGCTA GGGCTA GGG
156362 TTAAGACGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.12, C:0.15, G:0.58, T:0.15
Consensus pattern (6 bp):
GGGCTA
Found at i:161332 original size:68 final size:68
Alignment explanation
Indices: 161223--161406 Score: 260
Period size: 68 Copynumber: 2.7 Consensus size: 68
161213 ATTAATAAGT
* * * *
161223 CTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATTAAAGGCTAAGTACCTTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTACATTTGA
161288 GGC
66 GGC
* * *
161291 CTAACTATGCATTTGACAGAAAGGTATCATTTATGCCAGTTAGATGAAAGACTAAGTGCATTTGA
1 CTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTACATTTGA
161356 GGC
66 GGC
* * * * *
161359 CTAATTGTGCAATTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAA
1 CTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
161407 TGGTTAAATA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 102 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (68 bp):
CTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTACATTTGA
GGC
Found at i:161589 original size:81 final size:80
Alignment explanation
Indices: 161356--161672 Score: 467
Period size: 81 Copynumber: 3.9 Consensus size: 80
161346 GTGCATTTGA
* **
161356 GGCCTAATTGTGCAATTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAATGGTTAAATACCGT
1 GGCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATG-CAGTTAGATGAACAGTTAAATACCGT
* *
161421 TGATTAAAATAATAAT
65 TGAGTAAAAGAATAAT
* * *
161437 GGCCTAACTGTGTAATTGGCAGAAA--TGTTAATTATGCCAGTTAGATGAACAGTTAAATGCCGT
1 GGCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATG-CAGTTAGATGAACAGTTAAATACCGT
*
161500 TGATTAAAAGAATAAT
65 TGAGTAAAAGAATAAT
*
161516 GGCCTAACTGTGCAATTGGCAGAAAGGTATCAATTATGCAAGTTAGATGAACAGTTAAATACCGT
1 GGCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGC-AGTTAGATGAACAGTTAAATACCGT
161581 TGAGTAAAAGAATAAT
65 TGAGTAAAAGAATAAT
* * *
161597 GGCCTAACTATGCAATTGGCAGAAAGGTGTCAATTATGCTAGTTAGATGAACAGTTAAACACTGT
1 GGCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGC-AGTTAGATGAACAGTTAAATACCGT
161662 TGAGTAAAAGA
65 TGAGTAAAAGA
161673 TGAAAGATCA
Statistics
Matches: 215, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
79 72 0.33
80 1 0.00
81 142 0.66
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (80 bp):
GGCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCAGTTAGATGAACAGTTAAATACCGTT
GAGTAAAAGAATAAT
Found at i:161620 original size:160 final size:161
Alignment explanation
Indices: 161356--161655 Score: 478
Period size: 160 Copynumber: 1.9 Consensus size: 161
161346 GTGCATTTGA
* * **
161356 GGCCTAATTGTGCAATTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAATGGTTAAATACCGT
1 GGCCTAACTGTGCAATTGGCAGAAAGGTATCAATTATGTCAGTTAGATGAACAGTTAAATACCGT
* * * * *
161421 TGATTAAAATAATAATGGCCTAACTGTGTAATTGGCAGAAA-TGTTAATTATGCCAGTTAGATGA
66 TGAGTAAAAGAATAATGGCCTAACTATGCAATTGGCAGAAAGTGTCAATTATGCCAGTTAGATGA
161485 ACAGTTAAATGCCGTTGATTAAAAGAATAAT
131 ACAGTTAAATGCCGTTGATTAAAAGAATAAT
161516 GGCCTAACTGTGCAATTGGCAGAAAGGTATCAATTATG-CAAGTTAGATGAACAGTTAAATACCG
1 GGCCTAACTGTGCAATTGGCAGAAAGGTATCAATTATGTC-AGTTAGATGAACAGTTAAATACCG
*
161580 TTGAGTAAAAGAATAATGGCCTAACTATGCAATTGGCAGAAAGGTGTCAATTATGCTAGTTAGAT
65 TTGAGTAAAAGAATAATGGCCTAACTATGCAATTGGCAGAAA-GTGTCAATTATGCCAGTTAGAT
161645 GAACAGTTAAA
129 GAACAGTTAAA
161656 CACTGTTGAG
Statistics
Matches: 127, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
159 1 0.01
160 96 0.76
162 30 0.24
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (161 bp):
GGCCTAACTGTGCAATTGGCAGAAAGGTATCAATTATGTCAGTTAGATGAACAGTTAAATACCGT
TGAGTAAAAGAATAATGGCCTAACTATGCAATTGGCAGAAAGTGTCAATTATGCCAGTTAGATGA
ACAGTTAAATGCCGTTGATTAAAAGAATAAT
Found at i:172843 original size:47 final size:45
Alignment explanation
Indices: 172717--172942 Score: 167
Period size: 45 Copynumber: 5.0 Consensus size: 45
172707 TGTTGTTTTC
* * * * * *
172717 CTTGACTTTCTCA-CATAGAAGAGTCGATCTTTTAGTGTTGTCGTA
1 CTTGACTTTCTCATAAAAGAA-AGTCAATCTTTTAGTGCTGTCATT
* * * *
172762 CTTGACTCTCTCAT-GAAGAGAA-TCAACCTTTTAGTTG-TGTTATT
1 CTTGACTTTCTCATAAAAGA-AAGTCAATCTTTTAG-TGCTGTCATT
**
172806 CTTGACTTTCTCATAGAAAGAACAGTTGATCTTTTAGTGCTGTCATT
1 CTTGACTTTCTCATA-AAAGAA-AGTCAATCTTTTAGTGCTGTCATT
* * * *
172853 CTTGATTTTCTCAT-AAAGAGAAGTCAATCTTTCAGTGTTGTGATT
1 CTTGACTTTCTCATAAAAGA-AAGTCAATCTTTTAGTGCTGTCATT
* * * *
172898 CTTGACTTTCTCAGAAAA-AGAAGTTAAACTTTTAGTGATGTCATT
1 CTTGACTTTCTCATAAAAGA-AAGTCAATCTTTTAGTGCTGTCATT
172943 ATCAACTTGA
Statistics
Matches: 144, Mismatches: 27, Indels: 20
0.75 0.14 0.10
Matches are distributed among these distances:
44 27 0.19
45 77 0.53
46 12 0.08
47 28 0.19
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (45 bp):
CTTGACTTTCTCATAAAAGAAAGTCAATCTTTTAGTGCTGTCATT
Found at i:172865 original size:91 final size:90
Alignment explanation
Indices: 172701--172942 Score: 235
Period size: 91 Copynumber: 2.7 Consensus size: 90
172691 AGGAGTTAAT
* * * * * * *
172701 CTTT-AGTGTTGT-TTTCCTTGACTTTCTC-ACATAGAAGAGTCGATCTTTTAGTGTTGTCGTAC
1 CTTTCAGTGTTGTGATT-CTTGACTTTCTCAAAAAAGAA-AGTTGATCTTTTAGTGATGTCATTC
*
172763 TTGACTCTCTCATGAAGAGAA-TCAAC
64 TTGACTCTCTCATAAAGAGAAGTCAAC
* * * *
172789 CTTTTAGT-TGTGTTATTCTTGACTTTCTCATAGAAAGAACAGTTGATCTTTTAGTGCTGTCATT
1 CTTTCAGTGT-TGTGATTCTTGACTTTCTCA-AAAAAGAA-AGTTGATCTTTTAGTGATGTCATT
* * *
172853 CTTGATTTTCTCATAAAGAGAAGTCAAT
63 CTTGACTCTCTCATAAAGAGAAGTCAAC
* *
172881 CTTTCAGTGTTGTGATTCTTGACTTTCTCAGAAAAAG-AAGTTAAACTTTTAGTGATGTCATT
1 CTTTCAGTGTTGTGATTCTTGACTTTCTCA-AAAAAGAAAGTTGATCTTTTAGTGATGTCATT
172943 ATCAACTTGA
Statistics
Matches: 128, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
88 5 0.04
89 18 0.14
90 23 0.18
91 46 0.36
92 35 0.27
93 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (90 bp):
CTTTCAGTGTTGTGATTCTTGACTTTCTCAAAAAAGAAAGTTGATCTTTTAGTGATGTCATTCTT
GACTCTCTCATAAAGAGAAGTCAAC
Found at i:172981 original size:50 final size:51
Alignment explanation
Indices: 172941--173061 Score: 165
Period size: 51 Copynumber: 2.4 Consensus size: 51
172931 AGTGATGTCA
**
172941 TTATCAACTTGACTTTCTCGCT-GAGAGTACTCAACTTTTTAGTAGTATCAT
1 TTATCAACTTGACTTTCTCG-TAGAGAAAACTCAACTTTTTAGTAGTATCAT
* *
172992 TTTTCAA-TTCGACTTTCTCGTAGAGAAAAGTCAACTTTTTAGTAGTATCAT
1 TTATCAACTT-GACTTTCTCGTAGAGAAAACTCAACTTTTTAGTAGTATCAT
*
173043 TTCTCAACTTGACTTTCTC
1 TTATCAACTTGACTTTCTC
173062 ATGTAAAGGA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
50 3 0.05
51 57 0.92
52 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (51 bp):
TTATCAACTTGACTTTCTCGTAGAGAAAACTCAACTTTTTAGTAGTATCAT
Found at i:173075 original size:51 final size:50
Alignment explanation
Indices: 172944--173077 Score: 139
Period size: 51 Copynumber: 2.6 Consensus size: 50
172934 GATGTCATTA
* * * *
172944 TCAACTTGACTTTCTC-GCTGAGAGTACTCAACTTTTTAGTAGTATCATTTT
1 TCAACTTGACTTTCTCTG-T-AAAGAAGTCAACTTTTTAGTAGTATCATTTC
*
172995 TCAA-TTCGACTTTCTC-GTAGAGAAAAGTCAACTTTTTAGTAGTATCATTTC
1 TCAACTT-GACTTTCTCTGTA-A-AGAAGTCAACTTTTTAGTAGTATCATTTC
*
173046 TCAACTTGACTTTCTCATGTAAAGGAGTCAAC
1 TCAACTTGACTTTCTC-TGTAAAGAAGTCAAC
173078 CTATCTATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
49 1 0.01
50 3 0.04
51 60 0.86
52 3 0.04
53 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (50 bp):
TCAACTTGACTTTCTCTGTAAAGAAGTCAACTTTTTAGTAGTATCATTTC
Found at i:173816 original size:56 final size:57
Alignment explanation
Indices: 173738--173988 Score: 214
Period size: 57 Copynumber: 4.5 Consensus size: 57
173728 AATATTTTTT
* * ** * *
173738 AGTCTTAT-CTCCCTGAATGAAGAGTGGAGCGGACTAGTCTTTTGAAGA-TTTT-TCG
1 AGTCCTATACTCCCTGAAAGAAGAGTGGAGCAAACCAGTCTTTTCAA-ATTTTTCTCG
* *
173793 AGTCCTATACTCCCTGAAAGAAGAGTAGAGCAAACCCGT-TTTATCAAATTTTTCTCG
1 AGTCCTATACTCCCTGAAAGAAGAGTGGAGCAAACCAGTCTTT-TCAAATTTTTCTCG
* * *** * *
173850 AGTCCTATACTCCCTAAAAGAATA-TGGGAGTGGACCTA-TCTTCTGAAGA-TTTT-TCG
1 AGTCCTATACTCCCTGAAAGAAGAGT-GGAGCAAACC-AGTCTTTTCAA-ATTTTTCTCG
* * * * *
173906 AGTCTTAT-CTCCCTAAAATAAGAGTGTAGCAAACCAGTCTTATCAAATTTTTCTCG
1 AGTCCTATACTCCCTGAAAGAAGAGTGGAGCAAACCAGTCTTTTCAAATTTTTCTCG
173962 AGTCCTATACTCCCTGAAAGAAGAGTG
1 AGTCCTATACTCCCTGAAAGAAGAGTG
173989 AAGTGGACCC
Statistics
Matches: 154, Mismatches: 29, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
54 2 0.01
55 41 0.27
56 53 0.34
57 55 0.36
58 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (57 bp):
AGTCCTATACTCCCTGAAAGAAGAGTGGAGCAAACCAGTCTTTTCAAATTTTTCTCG
Found at i:173994 original size:112 final size:114
Alignment explanation
Indices: 173738--173997 Score: 352
Period size: 112 Copynumber: 2.3 Consensus size: 114
173728 AATATTTTTT
* * * *
173738 AGTCTTAT-CTCCCTGAATGAAGAGTGGAGCGGA-CTAGTCTTTTGAAGATTTTTCGAGTCCTAT
1 AGTCCTATACTCCCTGAAAGAAGAGTGGAGTGGACCTAGTCTTCTGAAGATTTTTCGAGTCCTAT
* * *
173801 ACTCCCTGAAAGAAGAGTAGAGCAAACCCGTTTTATCAAATTTTTCTCG
66 ACTCCCTAAAAGAAGAGTAGAGCAAACCAGTCTTATCAAATTTTTCTCG
* * *
173850 AGTCCTATACTCCCTAAAAGAATA-TGGGAGTGGACCTA-TCTTCTGAAGATTTTTCGAGTCTTA
1 AGTCCTATACTCCCTGAAAGAAGAGT-GGAGTGGACCTAGTCTTCTGAAGATTTTTCGAGTCCTA
*
173913 T-CTCCCTAAAATAAGAGT-GTAGCAAACCAGTCTTATCAAATTTTTCTCG
65 TACTCCCTAAAAGAAGAGTAG-AGCAAACCAGTCTTATCAAATTTTTCTCG
*
173962 AGTCCTATACTCCCTGAAAGAAGAGTGAAGTGGACC
1 AGTCCTATACTCCCTGAAAGAAGAGTGGAGTGGACC
173998 CGTCCCGTCT
Statistics
Matches: 129, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
111 1 0.01
112 81 0.63
113 44 0.34
114 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (114 bp):
AGTCCTATACTCCCTGAAAGAAGAGTGGAGTGGACCTAGTCTTCTGAAGATTTTTCGAGTCCTAT
ACTCCCTAAAAGAAGAGTAGAGCAAACCAGTCTTATCAAATTTTTCTCG
Found at i:174089 original size:55 final size:55
Alignment explanation
Indices: 173738--174176 Score: 210
Period size: 55 Copynumber: 7.8 Consensus size: 55
173728 AATATTTTTT
* ** * * **
173738 AGTCTTATCTCCCTGAATGAAGAGTGGAGCGGA-CTAGTCTTTTGAAGATTTTTCG
1 AGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACCCA-TATTCCGAAGATTTTTCG
* * * * *
173793 AGTCCTATACTCCCTGAAAGAAGAGTAGAGCAAACCCGTTTTATC-AA-ATTTTTCTCG
1 AGTCTTAT-CTCCCTGAAAGAAGAGTGGAGCAAACCCATATT-CCGAAGA-TTTT-TCG
* * * *** * * *
173850 AGTCCTATACTCCCTAAAAGAATA-TGGGAGTGGACCTATCTTCTGAAGATTTTTCG
1 AGTCTTAT-CTCCCTGAAAGAAGAGT-GGAGCAAACCCATATTCCGAAGATTTTTCG
* * * * *
173906 AGTCTTATCTCCCTAAAATAAGAGTGTAGCAAA-CCAGTCTTATC-AA-ATTTTTCTCG
1 AGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACCCA-TATT-CCGAAGA-TTTT-TCG
* * *** * * * *
173962 AGTCCTATACTCCCTGAAAGAAGAGTGAAGTGGACCCGTCCCGTCTTCCAAATATTTTTTCG
1 AGTCTTAT-CTCCCTGAAAG-A-A--G-AGTGGAGCAAACCCATATTCCGAAGA-TTTTTCG
* ** **
174024 AAT-TTAATCTCTATGAAAGAAGAGTGGAGCAAATTCATATTCCGAAGATTTTTCG
1 AGTCTT-ATCTCCCTGAAAGAAGAGTGGAGCAAACCCATATTCCGAAGATTTTTCG
* * * * *
174079 AGTCTTATCTCCCTAAAAGAAAAGTGGAGCAGACCCATCTTCCGAAGTTTTTTCG
1 AGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACCCATATTCCGAAGATTTTTCG
* * * *
174134 AGTCCTATCTCCCTGAAAGAAGAGTGAAGCAGACCCATCTTCC
1 AGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACCCATATTCC
174177 AAAATTGATC
Statistics
Matches: 292, Mismatches: 68, Indels: 48
0.72 0.17 0.12
Matches are distributed among these distances:
54 3 0.01
55 123 0.42
56 70 0.24
57 52 0.18
58 2 0.01
59 2 0.01
60 1 0.00
61 12 0.04
62 19 0.07
63 8 0.03
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (55 bp):
AGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACCCATATTCCGAAGATTTTTCG
Found at i:175268 original size:31 final size:31
Alignment explanation
Indices: 175230--175288 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
175220 CGTCAAGTCT
* *
175230 AGTAAGGCCCTGAACACAAAGCCGAGGATCC
1 AGTAAGGCCATGAACACAAAGCCAAGGATCC
*
175261 AGTAAGGCCATGAGCACAAAGCCAAGGA
1 AGTAAGGCCATGAACACAAAGCCAAGGA
175289 GCCTCCAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.25, G:0.27, T:0.08
Consensus pattern (31 bp):
AGTAAGGCCATGAACACAAAGCCAAGGATCC
Found at i:176591 original size:17 final size:17
Alignment explanation
Indices: 176565--176612 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
176555 CGAAAAACAT
*
176565 AAAATATGACTTTTCAA
1 AAAATTTGACTTTTCAA
176582 AAAATTTGACTTTTCAA
1 AAAATTTGACTTTTCAA
176599 AAAATTTGACTTTT
1 AAAATTTGACTTTT
176613 TAGTCAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (17 bp):
AAAATTTGACTTTTCAA
Found at i:176804 original size:14 final size:14
Alignment explanation
Indices: 176785--176811 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
176775 TCAACGGGTC
176785 GGGTCGGGTCAAAT
1 GGGTCGGGTCAAAT
176799 GGGTCGGGTCAAA
1 GGGTCGGGTCAAA
176812 ACTGGGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.44, T:0.19
Consensus pattern (14 bp):
GGGTCGGGTCAAAT
Found at i:176804 original size:19 final size:18
Alignment explanation
Indices: 176756--176808 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
176746 AAAGTCAACG
*
176756 GTCAACGGGTCAGGTCGA
1 GTCAACGGGTCGGGTCGA
*
176774 GTCAACGGGTCGGGTCGG
1 GTCAACGGGTCGGGTCGA
*
176792 GTCAAATGGGTCGGGTC
1 GTC-AACGGGTCGGGTC
176809 AAAACTGGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
18 19 0.61
19 12 0.39
ACGTcount: A:0.17, C:0.21, G:0.43, T:0.19
Consensus pattern (18 bp):
GTCAACGGGTCGGGTCGA
Found at i:178313 original size:6 final size:6
Alignment explanation
Indices: 178295--178332 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
178285 AAAAAATAGG
*
178295 AGAGAA A-AGAA AGAGAA AGAAAA AGAGAA AGATGAA AG
1 AGAGAA AGAGAA AGAGAA AGAGAA AGAGAA AGA-GAA AG
178333 TTTATTGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 5 0.18
6 18 0.64
7 5 0.18
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (6 bp):
AGAGAA
Found at i:195968 original size:19 final size:19
Alignment explanation
Indices: 195955--195991 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
195945 ATGTTTTGTT
195955 TTTAAAT-TGTTGTTTTGA
1 TTTAAATATGTTGTTTTGA
*
195973 TTTAATTATGTTGTTTTGA
1 TTTAAATATGTTGTTTTGA
195992 AAACTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (19 bp):
TTTAAATATGTTGTTTTGA
Found at i:199528 original size:13 final size:13
Alignment explanation
Indices: 199506--199535 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
199496 ACTAAACACC
199506 TTTC-ACATACCT
1 TTTCAACATACCT
199518 TTTCAACATACCT
1 TTTCAACATACCT
199531 TTTCA
1 TTTCA
199536 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:202301 original size:11 final size:10
Alignment explanation
Indices: 202275--202308 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
202265 AGTTCTTCAA
*
202275 TTTTCTTTCT
1 TTTTCTTTTT
202285 TTTTCTTTTT
1 TTTTCTTTTT
202295 CTTTTCTTTTT
1 -TTTTCTTTTT
202306 TTT
1 TTT
202309 ATTTTTTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:202315 original size:21 final size:21
Alignment explanation
Indices: 202275--202314 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
202265 AGTTCTTCAA
202275 TTTTCTTTCTTTTTCTTTTTC
1 TTTTCTTTCTTTTTCTTTTTC
*
202296 TTTTCTTT-TTTTTATTTTT
1 TTTTCTTTCTTTTTCTTTTT
202315 TAGTGCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTCTTTCTTTTTCTTTTTC
Found at i:204936 original size:13 final size:13
Alignment explanation
Indices: 204907--204941 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
204897 GGGGAGTAAT
*
204907 TTTTCAAAATTGA
1 TTTTCAAAAATGA
204920 -TTTCAAAAATGA
1 TTTTCAAAAATGA
204932 TTTTCAAAAA
1 TTTTCAAAAA
204942 GAAAATCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.40
Consensus pattern (13 bp):
TTTTCAAAAATGA
Found at i:207800 original size:16 final size:17
Alignment explanation
Indices: 207765--207804 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
207755 GTTGAAATTC
* *
207765 AATTTTTTTAAGTGTTA
1 AATTTTTTTAAGAGTCA
207782 AATTTTTTTAA-AGTCA
1 AATTTTTTTAAGAGTCA
207798 AATTTTT
1 AATTTTT
207805 GTTTGGAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (17 bp):
AATTTTTTTAAGAGTCA
Found at i:208203 original size:11 final size:10
Alignment explanation
Indices: 208166--208194 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
208156 TGTTCAAAGT
208166 TTTCAAAAAA
1 TTTCAAAAAA
208176 TTTCAAAAAA
1 TTTCAAAAAA
208186 TTTCAAAAA
1 TTTCAAAAA
208195 TAATTCAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (10 bp):
TTTCAAAAAA
Found at i:208531 original size:22 final size:21
Alignment explanation
Indices: 208505--208545 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
208495 TTAAATATTA
208505 TAAAGAAAGTATCGATACTCAT
1 TAAAG-AAGTATCGATACTCAT
*
208527 TAAAGGAGTATCGATACTC
1 TAAAGAAGTATCGATACTC
208546 CATGTCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (21 bp):
TAAAGAAGTATCGATACTCAT
Found at i:208663 original size:20 final size:20
Alignment explanation
Indices: 208638--208684 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
208628 CAAGTTGATG
208638 ACACTTAAAGAAGGGTAAGA
1 ACACTTAAAGAAGGGTAAGA
208658 ACACTTAAAGAAGGGTAAGA
1 ACACTTAAAGAAGGGTAAGA
208678 ACACTTA
1 ACACTTA
208685 TCCATGCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.13, G:0.21, T:0.17
Consensus pattern (20 bp):
ACACTTAAAGAAGGGTAAGA
Found at i:209766 original size:2 final size:2
Alignment explanation
Indices: 209759--209786 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
209749 AGCTTTACTA
209759 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
209787 TTGTGTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:213333 original size:4 final size:4
Alignment explanation
Indices: 213326--213435 Score: 59
Period size: 4 Copynumber: 27.0 Consensus size: 4
213316 AGCTAGTTGT
* * *
213326 TTAG TTAG TTAG ATAG TTTA- TCTAG CTAG TT-G TTAG TTAG TTAG ATAG
1 TTAG TTAG TTAG TTAG -TTAG T-TAG TTAG TTAG TTAG TTAG TTAG TTAG
* * * *
213374 TTTA- TCTAG CTAG TTAG TTAG ATAG TTAG ATAG TTTA- TCTAG CTAG
1 -TTAG T-TAG TTAG TTAG TTAG TTAG TTAG TTAG -TTAG T-TAG TTAG
213420 TT-G TTTAG TTAG TTAG
1 TTAG -TTAG TTAG TTAG
213436 ATATATATGT
Statistics
Matches: 80, Mismatches: 14, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
3 7 0.09
4 66 0.82
5 7 0.09
ACGTcount: A:0.26, C:0.05, G:0.22, T:0.46
Consensus pattern (4 bp):
TTAG
Found at i:213345 original size:33 final size:32
Alignment explanation
Indices: 213303--213438 Score: 236
Period size: 33 Copynumber: 4.2 Consensus size: 32
213293 ATATTGTTGA
213303 AGATAGTTTATCTAGCTAGTTGTTTAGTTAGTT
1 AGATAGTTTATCTAGCTAGTTG-TTAGTTAGTT
213336 AGATAGTTTATCTAGCTAGTTGTTAGTTAGTT
1 AGATAGTTTATCTAGCTAGTTGTTAGTTAGTT
*
213368 AGATAGTTTATCTAGCTAGTTAGTTAGATAGTT
1 AGATAGTTTATCTAGCTAGTT-GTTAGTTAGTT
213401 AGATAGTTTATCTAGCTAGTTGTTTAGTTAGTT
1 AGATAGTTTATCTAGCTAGTTG-TTAGTTAGTT
213434 AGATA
1 AGATA
213439 TATATGTTAC
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
32 32 0.32
33 67 0.68
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.46
Consensus pattern (32 bp):
AGATAGTTTATCTAGCTAGTTGTTAGTTAGTT
Found at i:213407 original size:65 final size:66
Alignment explanation
Indices: 213303--213438 Score: 240
Period size: 65 Copynumber: 2.1 Consensus size: 66
213293 ATATTGTTGA
*
213303 AGATAGTTTATCTAGCTAGTTGTTTAGTTAGTTAGATAGTTTATCTAGCTAGTTG-TTAGTTAGT
1 AGATAGTTTATCTAGCTAGTTGTTTAGATAGTTAGATAGTTTATCTAGCTAGTTGTTTAGTTAGT
213367 T
66 T
213368 AGATAGTTTATCTAGCTAGTTAG-TTAGATAGTTAGATAGTTTATCTAGCTAGTTGTTTAGTTAG
1 AGATAGTTTATCTAGCTAGTT-GTTTAGATAGTTAGATAGTTTATCTAGCTAGTTGTTTAGTTAG
213432 TT
65 TT
213434 AGATA
1 AGATA
213439 TATATGTTAC
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
65 52 0.76
66 16 0.24
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.46
Consensus pattern (66 bp):
AGATAGTTTATCTAGCTAGTTGTTTAGATAGTTAGATAGTTTATCTAGCTAGTTGTTTAGTTAGT
T
Found at i:214348 original size:17 final size:17
Alignment explanation
Indices: 214328--214366 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
214318 TTTTATAATA
214328 TAATT-ATTTATAAAAAT
1 TAATTAATTTA-AAAAAT
214345 TAATTAAATTTAAAAAAT
1 TAATT-AATTTAAAAAAT
214363 TAAT
1 TAAT
214367 AATAAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 10 0.50
19 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTAATTTAAAAAAT
Found at i:217160 original size:51 final size:51
Alignment explanation
Indices: 217084--217186 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
217074 CAGCGTCGAC
217084 AGTGAAAAATATACTGAGCATTATATCCAAGAGAGGTGAAGAAAATTTCGT
1 AGTGAAAAATATACTGAGCATTATATCCAAGAGAGGTGAAGAAAATTTCGT
217135 AGTGAAAAATATACTGAGCATTATATCCAAGAGAGGTGAAGAAAATTTCGT
1 AGTGAAAAATATACTGAGCATTATATCCAAGAGAGGTGAAGAAAATTTCGT
217186 A
1 A
217187 ATGAGGATAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25
Consensus pattern (51 bp):
AGTGAAAAATATACTGAGCATTATATCCAAGAGAGGTGAAGAAAATTTCGT
Found at i:224095 original size:172 final size:172
Alignment explanation
Indices: 223899--224242 Score: 688
Period size: 172 Copynumber: 2.0 Consensus size: 172
223889 TAAAGTCTAA
223899 GAATGTTTCAAGTTCAAGTTTTTTTGGAGTTCGAGTCAAGCTTCAATTTTTGGTTCTAAGTCAAG
1 GAATGTTTCAAGTTCAAGTTTTTTTGGAGTTCGAGTCAAGCTTCAATTTTTGGTTCTAAGTCAAG
223964 CTTGAAAATTTTAAGCTCACGAGCTTTCAAGTCGAGCTTCAATTTTTTTTATTTCAAGTTTGAGT
66 CTTGAAAATTTTAAGCTCACGAGCTTTCAAGTCGAGCTTCAATTTTTTTTATTTCAAGTTTGAGT
224029 CAAGCTTGATAATTTTAAACTCACAAGCTTCCAGTCGAGTCG
131 CAAGCTTGATAATTTTAAACTCACAAGCTTCCAGTCGAGTCG
224071 GAATGTTTCAAGTTCAAGTTTTTTTGGAGTTCGAGTCAAGCTTCAATTTTTGGTTCTAAGTCAAG
1 GAATGTTTCAAGTTCAAGTTTTTTTGGAGTTCGAGTCAAGCTTCAATTTTTGGTTCTAAGTCAAG
224136 CTTGAAAATTTTAAGCTCACGAGCTTTCAAGTCGAGCTTCAATTTTTTTTATTTCAAGTTTGAGT
66 CTTGAAAATTTTAAGCTCACGAGCTTTCAAGTCGAGCTTCAATTTTTTTTATTTCAAGTTTGAGT
224201 CAAGCTTGATAATTTTAAACTCACAAGCTTCCAGTCGAGTCG
131 CAAGCTTGATAATTTTAAACTCACAAGCTTCCAGTCGAGTCG
224243 AGTCGATCTC
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
172 172 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (172 bp):
GAATGTTTCAAGTTCAAGTTTTTTTGGAGTTCGAGTCAAGCTTCAATTTTTGGTTCTAAGTCAAG
CTTGAAAATTTTAAGCTCACGAGCTTTCAAGTCGAGCTTCAATTTTTTTTATTTCAAGTTTGAGT
CAAGCTTGATAATTTTAAACTCACAAGCTTCCAGTCGAGTCG
Found at i:226920 original size:13 final size:13
Alignment explanation
Indices: 226902--226926 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
226892 CGAAGTGCCA
226902 CGTAGAATTGCAG
1 CGTAGAATTGCAG
226915 CGTAGAATTGCA
1 CGTAGAATTGCA
226927 CCGAAGTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (13 bp):
CGTAGAATTGCAG
Found at i:227413 original size:2 final size:2
Alignment explanation
Indices: 227406--227465 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
227396 TTACATAAAC
227406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
227448 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
227466 CCGCAAATAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:228425 original size:24 final size:20
Alignment explanation
Indices: 228368--228444 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 20
228358 TTCTCCTTGA
*
228368 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
228388 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
228411 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
228432 A-TGCATCGATGCA
1 AGTGCATCGATGCA
228445 CTAATTGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 14 0.29
21 2 0.04
22 1 0.02
23 4 0.08
24 14 0.29
25 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:230692 original size:65 final size:64
Alignment explanation
Indices: 230559--230715 Score: 185
Period size: 65 Copynumber: 2.4 Consensus size: 64
230549 TGCACTAAGA
* *
230559 GTGCATCAATGCATAAAATGCATTCGATGTTTCAAAATAGCATGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCATGAGTGCATCGATGCATAGCTG
* *
230623 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CTTTGAGTGCATCGATGCATAG-
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AAATAGC-ATGAGTGCATCGATGCATAGC
*
230685 TAT
63 T-G
* * *
230688 GTGCATCGGTGCATGAAATGCTTTCGAT
1 GTGCATCGATGCATAAAATGCATTCGAT
230716 ATTCGATTTA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
64 29 0.36
65 49 0.60
66 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCATGAGTGCATCGATGCATAGCTG
Found at i:231114 original size:45 final size:45
Alignment explanation
Indices: 231050--231141 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
231040 TTTCTTTGAA
231050 AATAAATTTTGAAAAATTAAGTTTGAAATTACTCCCCCTTACTTT
1 AATAAATTTTGAAAAATTAAGTTTGAAATTACTCCCCCTTACTTT
231095 AATAAATTTTGAAAAATTAAGTTTGAAATTACTCCCCCTTACTTT
1 AATAAATTTTGAAAAATTAAGTTTGAAATTACTCCCCCTTACTTT
231140 AA
1 AA
231142 CACTTCTCCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (45 bp):
AATAAATTTTGAAAAATTAAGTTTGAAATTACTCCCCCTTACTTT
Found at i:231463 original size:28 final size:28
Alignment explanation
Indices: 231410--231464 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
231400 ATATATATAT
*
231410 AGTTCAAAAATCCATAAAGCAACAAATA
1 AGTTCAAAAATCCATAAACCAACAAATA
* *
231438 AGTTCAAACATCCA-ACAACCATCAAAT
1 AGTTCAAAAATCCATA-AACCAACAAAT
231465 TTAAACATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.53, C:0.24, G:0.05, T:0.18
Consensus pattern (28 bp):
AGTTCAAAAATCCATAAACCAACAAATA
Found at i:233314 original size:23 final size:22
Alignment explanation
Indices: 233282--233360 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 22
233272 TGGCATTGTA
233282 CATCGATGCACATTCAAGGCGTG
1 CATCGATGCACATTCAAGG-GTG
* * *
233305 CATCGGTGCACCTTC-ATGGTG
1 CATCGATGCACATTCAAGGGTG
*
233326 TATCGATGCACATTCAAAGGGATG
1 CATCGATGCACATTC-AAGGG-TG
233350 CATCGATGCAC
1 CATCGATGCAC
233361 TGTTAAGTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
21 15 0.33
22 2 0.04
23 16 0.36
24 12 0.27
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (22 bp):
CATCGATGCACATTCAAGGGTG
Found at i:233371 original size:44 final size:44
Alignment explanation
Indices: 233283--233379 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
233273 GGCATTGTAC
* *
233283 ATCGATGCACATTCAAGGCGTGCATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGCGTGCATCGATGCACCTTCATAGTGT
*
233327 ATCGATGCACATTCAAAGG-GATGCATCGATGCA-CTGTTA-AGTGT
1 ATCGATGCACATTC-AAGGCG-TGCATCGATGCACCT-TCATAGTGT
233371 ATCGATGCA
1 ATCGATGCA
233380 TGAAGCACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
44 30 0.64
45 17 0.36
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGCGTGCATCGATGCACCTTCATAGTGT
Found at i:239230 original size:64 final size:63
Alignment explanation
Indices: 239162--239340 Score: 208
Period size: 64 Copynumber: 2.8 Consensus size: 63
239152 TTGAACCCTT
*
239162 AGTGCATCGGTGCACTAAGAGTGCATCGATGCATAAAATGCATTCGATGTTTCA-AAATAGC-CT
1 AGTGCATCGATGCACT-AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCATAAA-A-CTCT
239225 G
63 G
*
239226 AGTGCATCGATGCATGGCT-G-GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACTC
1 AGTGCATCGATGCA---CTAGAGTGCATCGATGCATAAAATGCATTCGATG-TTTCATAAAACTC
239289 TG
62 TG
*
239291 AGTGCATCGATGCA-TAGTATGTGCATCG-TGCATGAAATGCATTCGATGTT
1 AGTGCATCGATGCACTAG-A-GTGCATCGATGCATAAAATGCATTCGATGTT
239341 CGATTTTTTC
Statistics
Matches: 102, Mismatches: 3, Indels: 21
0.81 0.02 0.17
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
63 2 0.02
64 61 0.60
65 32 0.31
66 3 0.03
67 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (63 bp):
AGTGCATCGATGCACTAGAGTGCATCGATGCATAAAATGCATTCGATGTTTCATAAAACTCTG
Done.