Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008219.1 Hibiscus syriacus cultivar Beakdansim tig00110851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50794

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7582--7700
44
2.7
44
98
0
229
28
3
23
44
1.69
7851--7928
31
2.5
31
100
0
156
28
7
7
56
1.55
9961--10051
39
2.3
39
86
0
119
31
19
27
20
1.97
12534--12567
12
2.8
12
86
0
50
20
14
44
20
1.87
12698--12733
17
2.2
17
90
5
56
47
0
0
52
1.00
12759--12811
15
3.6
15
80
9
56
39
5
1
52
1.36
13035--13088
16
3.2
16
77
15
56
38
0
0
61
0.96
21933--21980
10
4.4
10
78
19
51
10
12
22
54
1.68
21908--21980
24
3.0
24
88
4
67
12
15
23
49
1.78
21918--21973
14
4.3
14
80
17
75
10
14
23
51
1.73
21919--21993
24
3.1
23
90
3
96
13
12
20
54
1.70
22702--22756
16
3.4
16
89
0
92
10
12
20
56
1.66
22821--22851
16
1.9
16
100
0
62
6
12
22
58
1.58
24924--25377
134
3.4
134
86
2
635
27
17
26
28
1.98
28116--28150
3
12.0
3
87
6
54
71
0
0
28
0.86
28931--28974
23
1.9
23
86
9
63
47
9
2
40
1.48
37321--37444
17
7.2
17
70
17
62
59
0
0
39
1.03
37382--37446
17
3.7
17
76
13
69
70
0
1
27
0.96
40166--40221
11
5.5
11
75
16
57
62
0
35
1
1.06
40282--40395
58
2.1
55
82
14
139
35
1
11
50
1.49
40939--41028
21
4.2
21
63
19
51
48
11
2
37
1.51
40929--41067
65
2.2
61
85
11
174
48
8
2
40
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48190--48250
23
2.9
19
81
11
59
21
36
26
16
1.94
48232--48271
21
1.9
21
89
0
62
25
40
25
10
1.86
50740--50764
12
2.1
12
100
0
50
60
8
0
32
1.26

Tables:   1

The End!