genome.fa.s8221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008221.1 Hibiscus syriacus cultivar Beakdansim tig00110853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87129

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2232--2305	33	2.3	33	81	6	89	44	8	0	47	1.32
2410--2465	22	2.6	22	91	8	89	57	16	0	26	1.39
3127--3189	18	3.5	18	77	0	81	36	23	1	38	1.65
3466--3542	37	2.1	38	87	2	111	28	23	19	28	1.98
3849--3899	26	2.0	26	88	0	75	49	19	3	27	1.66
3848--3910	26	2.4	26	81	0	72	49	19	4	26	1.68
4685--4752	31	2.3	31	82	5	86	33	20	7	38	1.81
6430--6467	18	2.1	18	85	9	51	52	2	0	44	1.14
8139--8234	5	19.2	5	100	0	192	40	19	0	39	1.52
13113--13181	23	3.0	22	77	8	66	30	21	26	21	1.99
13838--13874	2	18.5	2	100	0	74	51	0	0	48	1.00
20255--20322	23	3.0	23	77	0	73	30	22	26	20	1.98
20980--21013	2	17.0	2	100	0	68	50	0	0	50	1.00
27397--27464	23	3.0	23	77	0	73	30	22	26	20	1.98
34519--34586	23	3.0	23	77	0	73	30	22	26	20	1.98
39602--39690	45	1.9	47	90	4	146	28	11	22	38	1.88
42146--42192	24	2.0	24	87	8	69	34	14	2	48	1.56
49332--49440	10	11.0	10	71	20	70	75	0	19	4	1.03
49335--49513	18	9.5	17	72	22	110	73	1	18	6	1.10
49366--49435	27	2.7	26	76	17	65	74	1	20	4	1.07
49342--49438	44	2.2	44	86	12	123	75	1	19	4	1.03
49335--49508	61	2.8	61	92	5	269	72	1	19	6	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49401--49519	27	4.4	27	76	16	115	74	0	18	5	1.06
49490--49524	14	2.5	14	86	13	54	80	0	11	8	0.92
49349--49525	29	6.2	28	67	20	91	74	1	18	6	1.10
50649--51290	153	4.0	156	82	6	607	29	16	24	29	1.96
50667--51322	102	6.1	105	82	6	587	28	16	24	30	1.97
50667--51360	51	12.9	54	84	7	522	29	16	24	29	1.97
58741--58773	15	2.2	15	100	0	66	57	15	9	18	1.63
60539--60591	24	2.2	24	89	0	79	20	39	18	20	1.92
66905--66945	2	20.5	2	100	0	82	0	48	0	51	1.00
72677--72719	18	2.4	18	100	0	86	30	23	13	32	1.93
73435--73484	24	2.1	24	96	0	91	32	18	24	26	1.97
75636--76074	93	4.7	93	87	0	583	33	16	26	23	1.96
76009--76140	66	2.0	66	82	2	158	31	15	27	25	1.96
78260--78289	15	2.0	15	100	0	60	13	46	13	26	1.80
82381--82573	96	2.0	96	89	2	298	36	12	5	45	1.66
83674--83712	15	2.6	15	80	15	53	79	2	12	5	1.00
83706--83760	4	13.8	4	88	7	85	76	1	0	21	0.88
83705--83788	24	3.5	24	78	10	91	72	3	3	20	1.15
83708--83792	28	3.0	29	84	6	113	70	4	3	21	1.21
83699--83788	32	2.7	30	79	17	90	73	3	4	18	1.15
83860--83931	19	3.5	20	72	18	58	65	0	6	27	1.18
85166--85250	36	2.5	34	92	5	136	32	10	18	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85268--85605	36	10.0	36	68	19	142	38	14	19	27	1.90
85277--85366	34	2.6	35	87	3	119	43	17	20	18	1.88
85391--85449	30	2.0	30	83	12	77	33	11	16	37	1.86
85533--85605	37	2.0	37	91	0	119	36	15	21	26	1.93
85404--85786	102	3.8	101	84	2	453	39	12	18	29	1.88
85562--85883	167	1.9	166	91	0	527	40	12	18	29	1.87
85689--85831	65	2.2	65	83	2	180	39	12	18	30	1.87
85858--85905	21	2.3	21	88	0	69	41	10	20	27	1.85
85870--85912	21	2.0	21	86	0	59	51	9	11	27	1.69
85879--86131	72	3.5	72	85	2	337	42	13	16	27	1.86
85879--86138	145	1.8	145	84	2	344	42	13	16	27	1.86

Tables:   1

The End!