genome.fa.s8223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008223.1 Hibiscus syriacus cultivar Beakdansim tig00110855_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138744

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21471--21517	21	2.2	21	84	0	58	65	10	6	17	1.43
23839--23870	17	1.9	16	93	6	55	34	9	0	56	1.32
30222--30341	61	2.0	61	89	0	186	24	15	24	36	1.93
31163--31232	31	2.3	31	89	0	104	48	2	5	42	1.41
31336--31416	31	2.6	31	80	3	92	53	11	8	27	1.65
37755--38011	20	12.6	20	74	10	146	36	18	18	26	1.94
37693--37989	143	2.1	143	84	6	379	33	19	18	28	1.95
37733--38032	163	1.8	163	86	4	435	34	19	18	28	1.95
37856--37928	21	3.5	21	75	3	67	24	21	16	36	1.94
37791--38037	41	6.0	41	71	12	152	34	19	18	27	1.95
38573--38712	19	7.8	19	69	18	84	12	22	20	44	1.85
38600--38684	33	2.5	33	92	1	143	14	24	21	40	1.90
38649--38712	20	3.2	20	80	12	69	12	25	15	46	1.81
40404--40779	94	4.1	93	93	2	598	21	12	18	47	1.81
40851--40876	12	2.2	12	100	0	52	0	7	19	73	1.07
42819--42855	14	2.6	14	88	12	58	32	0	18	48	1.49
42962--43055	33	2.8	33	93	0	152	45	19	22	12	1.83
42962--43060	19	5.7	19	67	22	74	46	19	22	12	1.82
43066--43216	19	8.7	19	69	21	98	13	24	18	43	1.86
43070--43196	33	3.8	33	95	0	218	13	24	17	44	1.84
43091--43178	14	5.6	14	69	23	50	12	25	18	44	1.84
43180--43262	20	4.2	20	71	15	55	24	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45525--45549	12	2.1	12	100	0	50	0	28	0	72	0.86
46524--46611	20	4.4	20	92	0	140	27	20	28	23	1.99
46519--46653	20	6.7	20	84	5	137	24	19	25	30	1.98
46580--46674	41	2.3	41	85	3	120	21	20	24	34	1.96
46642--46690	20	2.4	21	86	3	64	20	22	16	40	1.91
46693--46735	21	2.0	22	90	4	70	39	13	25	20	1.90
51888--51921	17	1.9	18	88	5	52	50	5	0	44	1.26
54371--54408	16	2.3	17	90	4	60	71	0	2	26	1.00
68427--68467	18	2.2	19	86	8	57	60	0	2	36	1.10
68617--68650	2	17.0	2	87	0	50	50	0	0	50	1.00
73056--73108	21	2.6	20	88	5	79	28	1	0	69	0.99
74578--74644	33	2.0	33	82	5	82	49	10	8	31	1.68
74969--75000	2	16.0	2	100	0	64	50	0	0	50	1.00
76612--76646	2	17.5	2	100	0	70	51	0	0	48	1.00
76805--76913	24	4.5	24	69	8	78	51	14	11	22	1.75
81227--81297	30	2.3	30	95	2	124	12	36	36	14	1.84
95510--95540	13	2.4	13	94	0	53	29	3	0	67	1.06
101800--101872	30	2.4	31	93	2	130	57	2	2	36	1.27
104560--104717	21	7.8	20	72	7	86	38	25	17	18	1.92
104684--104877	20	9.6	20	80	5	212	36	25	19	19	1.95
104684--104877	60	3.2	60	83	0	244	36	25	19	19	1.95
105237--105307	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105387--105462	20	3.8	19	81	10	89	44	17	25	13	1.84
105386--105462	40	1.9	41	94	2	138	44	16	25	12	1.84
105481--105578	19	5.7	19	70	22	90	10	23	22	43	1.83
105503--105592	14	5.7	14	70	23	63	10	24	22	43	1.83
105486--105600	33	3.5	33	96	0	212	10	23	20	46	1.81
107299--107767	93	5.1	93	98	0	913	22	12	18	46	1.83
107815--107943	19	7.3	19	75	17	125	45	28	17	8	1.77
107851--107943	33	2.8	32	91	4	150	46	27	18	7	1.76
107815--107943	52	2.5	52	74	14	140	45	28	17	8	1.77
107939--108073	19	7.6	19	75	16	128	11	19	23	45	1.82
107961--108017	14	3.7	14	77	20	60	10	21	22	45	1.82
107944--108036	33	2.8	33	95	0	168	10	20	21	47	1.80
109995--110030	14	2.6	14	95	0	63	33	0	22	44	1.53
110137--110234	19	5.4	19	84	13	143	45	17	22	14	1.84
110137--110252	53	2.2	53	98	1	225	43	18	24	13	1.86
110281--110478	19	11.4	19	73	21	193	13	20	18	47	1.82
110259--110492	52	4.6	52	83	11	306	13	21	18	46	1.83
110259--110478	85	2.6	84	82	9	293	13	21	18	46	1.83
110371--110425	14	3.6	14	73	21	56	10	23	20	45	1.82
110259--110492	33	6.9	33	78	14	262	13	21	18	46	1.83
111766--111975	20	10.5	20	84	5	228	20	18	25	36	1.95
111962--112044	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119566--119649	37	2.3	38	87	6	120	33	4	19	42	1.72
124154--124237	37	2.3	38	85	6	111	34	4	17	42	1.71
124202--125027	412	2.0	412	98	0	1598	31	17	15	35	1.91
127657--127723	28	2.4	27	78	11	73	38	2	0	58	1.14
137357--137403	19	2.5	19	77	16	53	59	0	6	34	1.23

Tables:   1

The End!