Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008229.1 Hibiscus syriacus cultivar Beakdansim tig00110865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3634043
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 17
Found at i:1981673 original size:22 final size:22
Alignment explanation
Indices: 1981631--1981697 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
1981621 GAAAGTCAAC
*
1981631 GGTCAACGGTCAACGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCG
1981655 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
1981677 GGTCAACGGTCGAGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
1981698 AGACCGGTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 30 0.73
24 11 0.27
ACGTcount: A:0.13, C:0.24, G:0.45, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:1981698 original size:17 final size:17
Alignment explanation
Indices: 1981638--1981675 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
1981628 AACGGTCAAC
1981638 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
1981655 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
1981672 GGTC
1 GGTC
1981676 GGGTCAACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:1981718 original size:19 final size:19
Alignment explanation
Indices: 1981694--1981812 Score: 102
Period size: 19 Copynumber: 6.2 Consensus size: 19
1981684 GGTCGAGTCG
1981694 GGTCAG-ACCGGTCAAACC
1 GGTCAGAACCGGTCAAACC
1981712 GGCTCAG-ACCGGTCAAACC
1 GG-TCAGAACCGGTCAAACC
1981731 GGTTC-GAACCGGTCAAACC
1 GG-TCAGAACCGGTCAAACC
* *
1981750 GGTCAGAACCGGTTGAAAATC
1 GGTCAGAACCGG-T-CAAACC
1981771 GGTCA-AACCGGTCAGAACC
1 GGTCAGAACCGGTCA-AACC
* * * *
1981790 AGTTGAAAACCGGTTAAACC
1 -GGTCAGAACCGGTCAAACC
1981810 GGT
1 GGT
1981813 TTCCAGCAGC
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
18 6 0.07
19 47 0.56
20 14 0.17
21 17 0.20
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (19 bp):
GGTCAGAACCGGTCAAACC
Found at i:1981776 original size:30 final size:30
Alignment explanation
Indices: 1981755--1981812 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1981745 AAACCGGTCA
* *
1981755 GAACCGGTTGAAAATCGGTCAAACCGGTCA
1 GAACCAGTTGAAAACCGGTCAAACCGGTCA
*
1981785 GAACCAGTTGAAAACCGGTTAAACCGGT
1 GAACCAGTTGAAAACCGGTCAAACCGGT
1981813 TTCCAGCAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.17
Consensus pattern (30 bp):
GAACCAGTTGAAAACCGGTCAAACCGGTCA
Found at i:1981813 original size:9 final size:9
Alignment explanation
Indices: 1981694--1981812 Score: 94
Period size: 9 Copynumber: 12.3 Consensus size: 9
1981684 GGTCGAGTCG
*
1981694 GGTCAGACC
1 GGTCAAACC
1981703 GGTCAAACC
1 GGTCAAACC
*
1981712 GGCTCAGACC
1 GG-TCAAACC
1981722 GGTCAAACC
1 GGTCAAACC
*
1981731 GGTTCGAACC
1 GG-TCAAACC
1981741 GGTCAAACC
1 GGTCAAACC
1981750 GGTCAGAACC
1 GGTCA-AACC
* *
1981760 GGTTGAAAATC
1 GG-T-CAAACC
1981771 GGTCAAACC
1 GGTCAAACC
1981780 GGTCAGAACC
1 GGTCA-AACC
* *
1981790 AGTTGAAAACC
1 -GGT-CAAACC
*
1981801 GGTTAAACC
1 GGTCAAACC
1981810 GGT
1 GGT
1981813 TTCCAGCAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
9 46 0.52
10 29 0.33
11 12 0.13
12 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:1986450 original size:29 final size:29
Alignment explanation
Indices: 1986344--1986450 Score: 90
Period size: 29 Copynumber: 3.5 Consensus size: 29
1986334 GGCATCCAAA
1986344 GTAATCTTATATTCTTTTAACTAAACATT
1 GTAATCTTATATTCTTTTAACTAAACATT
* * **
1986373 GCAATCTTATATTCATGTTAAACAAATCAAACAAG
1 GTAATCTTATATTC-T-TTTAAC---T-AAACATT
*
1986408 GTAATAC-AATATTCTTTTAACTAAACATT
1 GTAAT-CTTATATTCTTTTAACTAAACATT
*
1986437 GTAATCTTACATTC
1 GTAATCTTATATTC
1986451 ATTCTAAAGG
Statistics
Matches: 59, Mismatches: 11, Indels: 16
0.69 0.13 0.19
Matches are distributed among these distances:
28 1 0.02
29 28 0.47
30 2 0.03
31 5 0.08
33 5 0.08
34 2 0.03
35 15 0.25
36 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (29 bp):
GTAATCTTATATTCTTTTAACTAAACATT
Found at i:1989660 original size:42 final size:41
Alignment explanation
Indices: 1989614--1989706 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 41
1989604 CCCTACCATG
* * *
1989614 GTATCGATACTTA-AATACTATGGTATCGATACCTTTCTCTCA
1 GTATCGATAC-TACAACACTATGGTACCGATA-CTCTCTCTCA
* * * *
1989656 GTATCTATACTACTACACTATGGTACCGATACTCTCTTTCG
1 GTATCGATACTACAACACTATGGTACCGATACTCTCTCTCA
1989697 GTATCGATAC
1 GTATCGATAC
1989707 ATTTTGGCAT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
41 18 0.43
42 24 0.57
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (41 bp):
GTATCGATACTACAACACTATGGTACCGATACTCTCTCTCA
Found at i:1992055 original size:21 final size:21
Alignment explanation
Indices: 1992031--1992070 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1992021 AAGAATTTAT
1992031 TTTCAAAA-TACAAAAATGATG
1 TTTCAAAATTA-AAAAATGATG
1992052 TTTCAAAATTAAAAAATGA
1 TTTCAAAATTAAAAAATGA
1992071 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (21 bp):
TTTCAAAATTAAAAAATGATG
Found at i:1993377 original size:24 final size:24
Alignment explanation
Indices: 1993345--1993398 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
1993335 GTGATCATGG
*
1993345 TACTGAATTTGAAAATCTTGGATT
1 TACTGAATTTGAAAATCTTAGATT
1993369 TACTGAATTTGAAAATCTTAGATT
1 TACTGAATTTGAAAATCTTAGATT
1993393 TACTGA
1 TACTGA
1993399 GTTTTGTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (24 bp):
TACTGAATTTGAAAATCTTAGATT
Found at i:1996405 original size:18 final size:18
Alignment explanation
Indices: 1996382--1996424 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
1996372 GTTTTGATCT
* *
1996382 AATTATGTTATCTTTGAA
1 AATTATATTATCTTTCAA
*
1996400 AATTATATTATTTTTCAA
1 AATTATATTATCTTTCAA
1996418 ACATTAT
1 A-ATTAT
1996425 TTTCGATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (18 bp):
AATTATATTATCTTTCAA
Found at i:2014152 original size:18 final size:18
Alignment explanation
Indices: 2014102--2014153 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
2014092 CTCGATCTCT
2014102 TTAA-TTTGTTTATTTAA
1 TTAATTTTGTTTATTTAA
*
2014119 TTAATTTTCTTTTATTT-A
1 TTAATTTT-GTTTATTTAA
*
2014137 TTTATTATTGTTTATTT
1 TTAATT-TTGTTTATTT
2014154 TAAAAACAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 4 0.14
18 16 0.55
19 9 0.31
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (18 bp):
TTAATTTTGTTTATTTAA
Found at i:2014246 original size:17 final size:17
Alignment explanation
Indices: 2014206--2014247 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
2014196 ATAATATTTA
*
2014206 TTATTATATTATTTTTC
1 TTATTTTATTATTTTTC
*
2014223 TTTTTTTATTATTTATT-
1 TTATTTTATTATTT-TTC
2014240 TTATTTTA
1 TTATTTTA
2014248 ATATATCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTATTTTATTATTTTTC
Found at i:2018906 original size:32 final size:32
Alignment explanation
Indices: 2018863--2018924 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
2018853 ATTAAATATG
2018863 TTTTAGTATTTTA-ATTAAGTTTTAGGATATTAT
1 TTTTAGTATTTTATATT-AGTTTTAGG-TATTAT
*
2018896 TTTTA-TATTTTATATTTGTTTTAGGTATT
1 TTTTAGTATTTTATATTAGTTTTAGGTATT
2018925 TTAGTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 4 0.15
32 15 0.56
33 8 0.30
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (32 bp):
TTTTAGTATTTTATATTAGTTTTAGGTATTAT
Found at i:2019615 original size:18 final size:18
Alignment explanation
Indices: 2019569--2019617 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
2019559 AATCTCTTTA
2019569 ATTTGTTTATTTAATTATT
1 ATTT-TTTATTTAATTATT
* * *
2019588 TTTCTTTTATTTATTTCTT
1 ATT-TTTTATTTAATTATT
2019607 ATTTTTTATTT
1 ATTTTTTATTT
2019618 TAAAAACAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 8 0.32
19 16 0.64
20 1 0.04
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (18 bp):
ATTTTTTATTTAATTATT
Found at i:2023879 original size:15 final size:15
Alignment explanation
Indices: 2023868--2023896 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2023858 ACTCAAAAAT
2023868 AAGAAAAGCAAAGAA
1 AAGAAAAGCAAAGAA
2023883 AAGAAAAG-AAAGAA
1 AAGAAAAGCAAAGAA
2023897 GTTGAAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAAAGCAAAGAA
Found at i:2029151 original size:15 final size:14
Alignment explanation
Indices: 2029105--2029151 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
2029095 AACGAAAGTG
2029105 AATAAT-AAAAATA
1 AATAATGAAAAATA
*
2029118 AATATTGAACAAA-A
1 AATAATGAA-AAATA
2029132 AATAATGAGAAAATA
1 AATAATGA-AAAATA
2029147 AATAA
1 AATAA
2029152 AGTAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
13 5 0.18
14 13 0.46
15 10 0.36
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.21
Consensus pattern (14 bp):
AATAATGAAAAATA
Found at i:2029757 original size:13 final size:13
Alignment explanation
Indices: 2029739--2029772 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
2029729 AGCATTTTGA
*
2029739 AAAGAAAATAATG
1 AAAGAAAATAAAG
2029752 AAAGAAAATAAAG
1 AAAGAAAATAAAG
2029765 AAAGAAAA
1 AAAGAAAA
2029773 GTAGAACTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (13 bp):
AAAGAAAATAAAG
Found at i:2031481 original size:4 final size:4
Alignment explanation
Indices: 2031466--2031543 Score: 56
Period size: 4 Copynumber: 18.5 Consensus size: 4
2031456 ACCTAAAAAT
2031466 ATAA AT-A A-AA ATAA ATAA CCA-AA ATAA ATAA ATCAA AGTAA ATAAA
1 ATAA ATAA ATAA ATAA ATAA --ATAA ATAA ATAA AT-AA A-TAA AT-AA
2031512 ATAA ATAA ATAAA ATAA A-ATA ATAA TATAA AT
1 ATAA ATAA AT-AA ATAA ATA-A ATAA -ATAA AT
2031544 GGGTTGCCTC
Statistics
Matches: 62, Mismatches: 0, Indels: 24
0.72 0.00 0.28
Matches are distributed among these distances:
3 6 0.10
4 33 0.53
5 21 0.34
6 2 0.03
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:2031498 original size:27 final size:27
Alignment explanation
Indices: 2031466--2031543 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
2031456 ACCTAAAAAT
*
2031466 ATAAATAAAAATAAATAACCA-AAATAA
1 ATAAATAAAAATAAATAA-AATAAATAA
* *
2031493 ATAAATCAAAGTAAATAAAATAAATAA
1 ATAAATAAAAATAAATAAAATAAATAA
*
2031520 ATAAA-ATAAAAT-AATAATATAAAT
1 ATAAATA-AAAATAAATAAAATAAAT
2031544 GGGTTGCCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.28
27 31 0.72
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (27 bp):
ATAAATAAAAATAAATAAAATAAATAA
Found at i:2031524 original size:13 final size:13
Alignment explanation
Indices: 2031466--2031542 Score: 68
Period size: 13 Copynumber: 5.7 Consensus size: 13
2031456 ACCTAAAAAT
2031466 ATAAATAAAAATAA
1 ATAAAT-AAAATAA
**
2031480 ATAACCAAAATAA
1 ATAAATAAAATAA
*
2031493 ATAAATCAAAGTAA
1 ATAAAT-AAAATAA
2031507 ATAAA-ATAAATAA
1 ATAAATA-AAATAA
2031520 ATAAAATAAAAT-A
1 AT-AAATAAAATAA
2031533 ATAATATAAA
1 ATAA-ATAAA
2031543 TGGGTTGCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
12 3 0.06
13 26 0.50
14 22 0.42
15 1 0.02
ACGTcount: A:0.73, C:0.04, G:0.01, T:0.22
Consensus pattern (13 bp):
ATAAATAAAATAA
Found at i:2035032 original size:13 final size:13
Alignment explanation
Indices: 2035014--2035049 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
2035004 AGAATTGTTA
*
2035014 AAAGAAAATAATG
1 AAAGAAAATAAAG
2035027 AAAGAAAATAAAG
1 AAAGAAAATAAAG
2035040 AAAGAAAATA
1 AAAGAAAATA
2035050 GGAGATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (13 bp):
AAAGAAAATAAAG
Found at i:2037597 original size:21 final size:21
Alignment explanation
Indices: 2037571--2037614 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2037561 AGTTAGATCC
*
2037571 AATA-TTATAGTCTCAAAACAA
1 AATATTTATA-TCTAAAAACAA
*
2037592 AATATTTATATTTAAAAACAA
1 AATATTTATATCTAAAAACAA
2037613 AA
1 AA
2037615 AAGAATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (21 bp):
AATATTTATATCTAAAAACAA
Found at i:2037979 original size:26 final size:29
Alignment explanation
Indices: 2037950--2038002 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
2037940 GAGCTTAAAA
2037950 TCCAAAA-CCT-ATAAAA-AATATAATAT
1 TCCAAAATCCTCATAAAAGAATATAATAT
*
2037976 TCCAAAATCCTCATAAAAGTATATAAT
1 TCCAAAATCCTCATAAAAGAATATAAT
2038003 TAAAATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 3 0.13
28 6 0.26
29 7 0.30
ACGTcount: A:0.53, C:0.17, G:0.02, T:0.28
Consensus pattern (29 bp):
TCCAAAATCCTCATAAAAGAATATAATAT
Found at i:2044722 original size:2 final size:2
Alignment explanation
Indices: 2044710--2044742 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
2044700 ATTAGATTAA
2044710 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2044743 TGATTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2045125 original size:150 final size:148
Alignment explanation
Indices: 2044933--2045373 Score: 716
Period size: 141 Copynumber: 3.0 Consensus size: 148
2044923 TATATATATA
* * * *
2044933 ATCTAAAGTTTTTTTTGTTTTTTATTCTGTATAACTATATCAATTCATAAGAGTTTCTTTATTTT
1 ATCTAAAGTTTTTTTTTTTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTT
* * *
2044998 AAATGATATTTTTTAGTCCAAAAAATAAAATTAAAATTCGAAAATATGACTACACATGATAGGTA
66 AAATGATAATTTTGAGTCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTA
2045063 AAATGACATCAAACAGTC
131 AAATGACATCAAACAGTC
2045081 ATCTAAAGTTTTTTATTTTTTTCTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATT
1 ATCTAAAGTTTTTT-TTTTTTT-TTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATT
* * *
2045146 TTAAATGATAATTTTGATTCCAAAAAATAAAATTAAAATTTGAAAGTATGACTACGCATGATAGG
64 TTAAATGATAATTTTGAGTCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGG
*
2045211 TAAAATGACATCAAACAGCC
129 TAAAATGACATCAAACAGTC
2045231 ATCTAAAG-------TTTTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTT
1 ATCTAAAGTTTTTTTTTTTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTT
2045289 AAATGATAATTTTGAGTCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTA
66 AAATGATAATTTTGAGTCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTA
2045354 AAATGACATCAAACAGTC
131 AAATGACATCAAACAGTC
2045372 AT
1 AT
2045374 GTGCCATTCT
Statistics
Matches: 276, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
141 125 0.45
142 6 0.02
148 14 0.05
149 6 0.02
150 125 0.45
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.40
Consensus pattern (148 bp):
ATCTAAAGTTTTTTTTTTTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTT
AAATGATAATTTTGAGTCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTA
AAATGACATCAAACAGTC
Found at i:2045253 original size:141 final size:142
Alignment explanation
Indices: 2044950--2045369 Score: 671
Period size: 150 Copynumber: 2.9 Consensus size: 142
2044940 GTTTTTTTTG
* * * * *
2044950 TTTTTTATTCTGTATAACTATATCAATTCATAAGAGTTTCTTTATTTTAAATGATATTTTTTAGT
1 TTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAGT
* *
2045015 CCAAAAAATAAAATTAAAATTCGAAAATATGACTACACATGATAGGTAAAATGACATCAAACAGT
66 CCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTAAAATGACATCAAACAGC
2045080 CATCTAAAGTTTTTTATTT
131 CATCTAAAG-------TTT
*
2045099 TTTTCTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAT
1 TTTT-TTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAG
* *
2045164 TCCAAAAAATAAAATTAAAATTTGAAAGTATGACTACGCATGATAGGTAAAATGACATCAAACAG
65 TCCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTAAAATGACATCAAACAG
2045229 CCATCTAAAG-TT
130 CCATCTAAAGTTT
2045241 TTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAGT
1 TTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAGT
2045306 CCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTAAAATGACATCAAACAG
66 CCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTAAAATGACATCAAACAG
2045370 TCATGTGCCA
Statistics
Matches: 257, Mismatches: 13, Indels: 10
0.92 0.05 0.04
Matches are distributed among these distances:
141 122 0.47
142 6 0.02
149 4 0.02
150 125 0.49
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.39
Consensus pattern (142 bp):
TTTTTTCTTCTGTATAACTATATCAATTCATACGATTTTCTTTATTTTAAATGATAATTTTGAGT
CCAAAAAATAAAATTAAAATTCGAAAGTATGACTACACATGATAGGTAAAATGACATCAAACAGC
CATCTAAAGTTT
Found at i:2049915 original size:20 final size:20
Alignment explanation
Indices: 2049887--2049957 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
2049877 ACTGCATGCT
* *
2049887 GGTACCGATACTGACCCTTG
1 GGTATCGATACTGAACCTTG
2049907 GGTATCGATACTGAACCTTG
1 GGTATCGATACTGAACCTTG
2049927 GGTATCGATACTGAACCTTG
1 GGTATCGATACTGAACCTTG
*
2049947 GGTATCAATAC
1 GGTATCGATAC
2049958 CCACTTTTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (20 bp):
GGTATCGATACTGAACCTTG
Found at i:2049971 original size:40 final size:40
Alignment explanation
Indices: 2049887--2049978 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
2049877 ACTGCATGCT
* * * * *
2049887 GGTACCGATACTGACCCTTGGGTATCGATACTGAACCTTG
1 GGTATCGATACTGAACCTTGGGTATCAATACTCAACCTTA
* *
2049927 GGTATCGATACTGAACCTTGGGTATCAATAC-CCACTTTTA
1 GGTATCGATACTGAACCTTGGGTATCAATACTCAAC-CTTA
2049967 GGTATCGATACT
1 GGTATCGATACT
2049979 AACATGCTGA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (40 bp):
GGTATCGATACTGAACCTTGGGTATCAATACTCAACCTTA
Found at i:2060199 original size:84 final size:82
Alignment explanation
Indices: 2060046--2061066 Score: 968
Period size: 84 Copynumber: 12.4 Consensus size: 82
2060036 TTTACAAACT
* * * * * * **
2060046 ATTTGCAGTATAACTCAAGGCTAGAGGGGTTATCTGCCAACAAAGACCTTTGAGTTCAACTACAC
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCA-AAAGACCTTCGAGTTCGACTACGT
*
2060111 TCAGCT-CAACGGCATATC
65 TCAGCTCCAA-GGCACATC
* *
2060129 ATTTACAGCATAACTCAAGGTTAGAAGGGTTATCTGTCTCCAAAAGACCTTCGAGTTTGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-C-CCAAAAGACCTTCGAGTTCGACTACG
2060194 TTCAGCTCCAAGGCACATC
64 TTCAGCTCCAAGGCACATC
* * * * * *
2060213 ATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTG-CC-AAAGACCCTCGAGTTCGACTAC-TC
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCAAAAGACCTTCGAGTTCGACTACGT-
** *
2060275 TCAG-TTTAGAGGGAACATC
65 TCAGCTCCA-A-GGCACATC
* * * *
2060294 ATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAGAAGACCTTTGAGTTCAACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-C-CCAAAAGACCTTCGAGTTCGACTACG
2060359 CTT-AGCTCCAAGGCACATC
64 -TTCAGCTCCAAGGCACATC
* * * * * *
2060378 ATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCC--CAAAAGACCTTCGAGTTCGACTACG
* * *
2060443 CTCAACTCCAAGGCATATC
64 TTCAGCTCCAAGGCACATC
2060462 ATTTACAGCATAACTCAAGGCTAGAAGGG-----T------AAGACCTTCGAGTTCGACTACGTT
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCAAAAGACCTTCGAGTTCGACTACGTT
2060516 CAGCTCCAAGGCACATC
66 CAGCTCCAAGGCACATC
* * * * * * * *
2060533 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG-CC-AAAGACCCTCGAGTTTGACTACGCT
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCAAAAGACCTTCGAGTTCGACTACGTT
* *
2060596 CAGCTTCGAGGGCACATC
66 CAGC-TCCAAGGCACATC
* * * *
2060614 ATTTACAACATAACTCAAGGCTAGAAGGGTTATTTGTCACCAGAAGACCTTTGAGTTCGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-C-CCAAAAGACCTTCGAGTTCGACTACG
*
2060679 CTCAGCTCCAAGGCACATC
64 TTCAGCTCCAAGGCACATC
* * * ** * * * *
2060698 ATTTGCAACATAGCTCAAGGAAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGGCTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCC--CAAAAGACCTTCGAGTTCGACTACG
* * *
2060763 CTCAGCTCCAAGGCATATT
64 TTCAGCTCCAAGGCACATC
* *
2060782 ATTTACAGCATAACTCAAGGCTAAAAGGGTTATCTGTCTCCAAAATACCTTCGAGTTCGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-C-CCAAAAGACCTTCGAGTTCGACTACG
2060847 TTCAGCTCCAAGGCACATC
64 TTCAGCTCCAAGGCACATC
** * * * * * * *
2060866 ATTTGTAGCATAGCTTAAGTCGAGAAGGGATATCTG-CC-AAAGACCCTCGAGTTCGACTACGCT
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCAAAAGACCTTCGAGTTCGACTACGTT
* * *
2060929 CAGCTTCGAGGGCACATT
66 CAGC-TCCAAGGCACATC
* *
2060947 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCGCCAGAAGACCTTTGAGTTCGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-C-CCAAAAGACCTTCGAGTTCGACTACG
*
2061012 CTCAGCTCCAAGGCACATC
64 TTCAGCTCCAAGGCACATC
* * * *
2061031 ATTTGCAACATAGCTCAAGGCAAGAAGGGTTATCTG
1 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG
2061067 TCAATAAAAT
Statistics
Matches: 766, Mismatches: 133, Indels: 77
0.78 0.14 0.08
Matches are distributed among these distances:
71 63 0.08
76 1 0.00
79 4 0.01
80 76 0.10
81 120 0.16
82 2 0.00
83 35 0.05
84 382 0.50
85 78 0.10
86 4 0.01
87 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (82 bp):
ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCCCAAAAGACCTTCGAGTTCGACTACGTT
CAGCTCCAAGGCACATC
Found at i:2060321 original size:165 final size:165
Alignment explanation
Indices: 2060059--2061066 Score: 1136
Period size: 165 Copynumber: 6.1 Consensus size: 165
2060049 TGCAGTATAA
* * * * * * * * * *
2060059 CTCAAGGCTAGAGGGGTTATCTGCCAACAAAGACCTTTGAGTTCAACTACACTCAGCTCA-ACGG
1 CTCAAGGCAAGAAGGGCTATCTG-C--CAAAGACCCTCGAGTTCGACTACGCTCAGTTTAGAGGG
* * * *
2060123 CATATCATTTACAGCATAACTCAAGGTTAGAAGGGTTATCTGTCTCCAAAAGACCTTCGAGTTTG
63 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTTCG
*
2060188 ACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATAG
128 ACTACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
* * * * * *
2060226 CTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACTCTCAGTTTAGAGGGAAC
1 CTCAAGGCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGTTTAGAGGGCAC
* * * *
2060291 ATCATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAGAAGACCTTTGAGTTCAACT
66 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTTCGACT
2060356 ACGCTT-AGCTCCAAGGCACATCATTTGCAACATAG
131 ACG-TTCAGCTCCAAGGCACATCATTTGCAACATAG
* * * **
2060391 CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAACTCCA-A-
1 CTCAAGGCAAGAAGGGCTATCTG-C--C-AAAGACCCTCGAGTTCGACTACGCTC-AGTTTAGAG
*
2060454 GGCATATCATTTACAGCATAACTCAAGGCTAGAA-GG------G--T----AAGACCTTCGAGTT
61 GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTT
* *
2060506 CGACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATAA
126 CGACTACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
* * * * * *
2060546 CTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGACTACGCTCAGCTTCGAGGGCAC
1 CTCAAGGCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGTTTAGAGGGCAC
* * * *
2060611 ATCATTTACAACATAACTCAAGGCTAGAAGGGTTATTTGTCACCAGAAGACCTTTGAGTTCGACT
66 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTTCGACT
*
2060676 ACGCTCAGCTCCAAGGCACATCATTTGCAACATAG
131 ACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
* * * * * **
2060711 CTCAAGGAAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGGCTACGCTCAGCTCCA-A-
1 CTCAAGGCAAGAAGGGCTA-TCTGC--C-AAAGACCCTCGAGTTCGACTACGCTCAG-TTTAGAG
* * * * *
2060774 GGCATATTATTTACAGCATAACTCAAGGCTAAAAGGGTTATCTGTCTCCAAAATACCTTCGAGTT
61 GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTT
* *
2060839 CGACTACGTTCAGCTCCAAGGCACATCATTTGTAGCATAG
126 CGACTACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
* * * * * *
2060879 CTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCTTCGAGGGCAC
1 CTCAAGGCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGTTTAGAGGGCAC
* * *
2060944 ATTATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCGCCAGAAGACCTTTGAGTTCGACT
66 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTTCGACT
*
2061009 ACGCTCAGCTCCAAGGCACATCATTTGCAACATAG
131 ACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
*
2061044 CTCAAGGCAAGAAGGGTTATCTG
1 CTCAAGGCAAGAAGGGCTATCTG
2061067 TCAATAAAAT
Statistics
Matches: 703, Mismatches: 108, Indels: 62
0.81 0.12 0.07
Matches are distributed among these distances:
150 1 0.00
151 25 0.04
152 33 0.05
153 2 0.00
154 3 0.00
155 66 0.09
159 1 0.00
161 1 0.00
164 54 0.08
165 292 0.42
166 7 0.01
167 24 0.03
168 140 0.20
169 51 0.07
170 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (165 bp):
CTCAAGGCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGTTTAGAGGGCAC
ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCTCCAGAAGACCTTCGAGTTCGACT
ACGTTCAGCTCCAAGGCACATCATTTGCAACATAG
Found at i:2060688 original size:320 final size:324
Alignment explanation
Indices: 2060059--2061059 Score: 1501
Period size: 320 Copynumber: 3.0 Consensus size: 324
2060049 TGCAGTATAA
* * * * * * *
2060059 CTCAAGGCTAGAGGGGTTATCTGCCAAC-AAAGACCTTTGAGTTCAACTACACTCAGCT-CAACG
1 CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-G
* *
2060122 GCATATCATTTACAGCATAACTCAAGGTTAGAAGGGTTATCTGTCTCCAAAAGACCTTCGAGTTT
65 GCATATCATTTACAGCATAACTCAAGGCTAGAAGGG-----TG-CT---AAAGACCTTCGAGTTC
*
2060187 GACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCA
121 GACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGATATCTGCCA
* * * * *
2060252 AAGACCCTCGAGTTCGACTACTCTCAGTTTAGAGGGAACATCATTTACAGTATAACTCAAGGCTA
186 AAGACCCTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
* *
2060317 GAAGGGTTATCTGTCACCAGAAGACCTTTGAGTTCAACTACGCTTAGCTCCAAGGCACATCATTT
251 GAAGGGTTATCTGTCACCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
2060382 GCAACATAG
316 GCAACATAG
*
2060391 CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAACTCCAAGG
1 CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
2060456 CATATCATTTACAGCATAACTCAAGGCTAGAA-GG-G-T-AAGACCTTCGAGTTCGACTACGTTC
66 CATATCATTTACAGCATAACTCAAGGCTAGAAGGGTGCTAAAGACCTTCGAGTTCGACTACGTTC
* *
2060517 AGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCG
131 AGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCG
* *
2060582 AGTTTGACTACGCTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTAT
196 AGTTCGACTACGCTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTAT
*
2060647 TTGTCACCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAG
261 CTGTCACCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAG
* * *
2060711 CTCAAGGAAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGGCTACGCTCAGCTCCAAGG
1 CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * *
2060776 CATATTATTTACAGCATAACTCAAGGCTAAAAGGGTTATCTGTCTCCAAAATACCTTCGAGTTCG
66 CATATCATTTACAGCATAACTCAAGGCTAGAAGGG-----TG-CT---AAAGACCTTCGAGTTCG
*
2060841 ACTACGTTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAA
122 ACTACGTTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAA
*
2060906 AGACCCTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATTATTTACAGCATAACTCAAGGCTAG
187 AGACCCTCGAGTTCGACTACGCTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAG
*
2060971 AAGGGTTATCTGTCGCCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
252 AAGGGTTATCTGTCACCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
2061036 CAACATAG
317 CAACATAG
2061044 CTCAAGGCAAGAAGGG
1 CTCAAGGCAAGAAGGG
2061060 TTATCTGTCA
Statistics
Matches: 616, Mismatches: 38, Indels: 29
0.90 0.06 0.04
Matches are distributed among these distances:
320 297 0.48
321 2 0.00
324 1 0.00
326 1 0.00
327 1 0.00
329 1 0.00
332 26 0.04
333 284 0.46
334 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (324 bp):
CTCAAGGCAAGAAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
CATATCATTTACAGCATAACTCAAGGCTAGAAGGGTGCTAAAGACCTTCGAGTTCGACTACGTTC
AGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCG
AGTTCGACTACGCTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTAT
CTGTCACCAGAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAG
Found at i:2062624 original size:12 final size:12
Alignment explanation
Indices: 2062607--2062633 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2062597 AATAGAATAT
2062607 TTTAAATTTTAA
1 TTTAAATTTTAA
2062619 TTTAAATTTTAA
1 TTTAAATTTTAA
2062631 TTT
1 TTT
2062634 TCGCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAAATTTTAA
Found at i:2084346 original size:31 final size:31
Alignment explanation
Indices: 2084311--2084388 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
2084301 TTCAATGTGC
* * *
2084311 TAAGTGATCAAAACTTAATAAAACGATAATG
1 TAAGTGACCAAAACTTAATAAAACAATAACG
*
2084342 TAAGTTACCAAAACTTAATAAAACAATAACG
1 TAAGTGACCAAAACTTAATAAAACAATAACG
2084373 TAAGTGACCAAAACTT
1 TAAGTGACCAAAACTT
2084389 GTGTTTTTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.24
Consensus pattern (31 bp):
TAAGTGACCAAAACTTAATAAAACAATAACG
Found at i:2084584 original size:31 final size:31
Alignment explanation
Indices: 2084558--2084625 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
2084548 TAGTGATCAC
2084558 ATCTTAATTAAAACAAAACGAAAGTGACTAA
1 ATCTTAATTAAAACAAAACGAAAGTGACTAA
* * ** *
2084589 ATCTTAATTAAAACGAAGCGAAAAAGACTGA
1 ATCTTAATTAAAACAAAACGAAAGTGACTAA
2084620 ATCTTA
1 ATCTTA
2084626 TATTTTTTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.51, C:0.13, G:0.12, T:0.24
Consensus pattern (31 bp):
ATCTTAATTAAAACAAAACGAAAGTGACTAA
Found at i:2093857 original size:17 final size:18
Alignment explanation
Indices: 2093835--2093870 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2093825 GTACACTAAG
2093835 AGTGCA-TCGATGTATCA
1 AGTGCATTCGATGTATCA
*
2093852 AGTGCATTCGATGTTTCA
1 AGTGCATTCGATGTATCA
2093870 A
1 A
2093871 AATAGCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
AGTGCATTCGATGTATCA
Found at i:2093922 original size:64 final size:65
Alignment explanation
Indices: 2093836--2093992 Score: 203
Period size: 66 Copynumber: 2.4 Consensus size: 65
2093826 TACACTAAGA
* * * *
2093836 GTGCATCGATGTATCAAGTGCATTCGATG-TTTCA-AAATAGCCAGAGTGCATCGATGCATGGCT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCACAGTGCATCGATGCATGG-T
2093899 -G
64 AG
*
2093900 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATTAAAACCCTCAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-TAAAACCCACAGTGCATCGATGCATGGTA
*
2093965 T
65 G
*
2093966 GTGCATCGATGCATGAAATGCATTCGA
1 GTGCATCGATGCATCAAATGCATTCGA
2093993 AGTTCAATTT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
64 27 0.33
65 6 0.07
66 46 0.56
67 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCACAGTGCATCGATGCATGGTAG
Found at i:2094382 original size:20 final size:20
Alignment explanation
Indices: 2094357--2094398 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
2094347 AAATTACTCT
2094357 CCCTTACTATAACACTTATC
1 CCCTTACTATAACACTTATC
*
2094377 CCCTTACTATAACACTTCTC
1 CCCTTACTATAACACTTATC
2094397 CC
1 CC
2094399 ACTTCTCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (20 bp):
CCCTTACTATAACACTTATC
Found at i:2094731 original size:14 final size:15
Alignment explanation
Indices: 2094712--2094740 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2094702 TCAAACATTT
2094712 AACAATCCA-AAACA
1 AACAATCCAGAAACA
2094726 AACAATCCAGAAACA
1 AACAATCCAGAAACA
2094741 TCAAAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.28, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Found at i:2095102 original size:18 final size:19
Alignment explanation
Indices: 2095079--2095118 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
2095069 GAGGAGAAGG
2095079 AGGAGCA-CGAGAAGAGCT
1 AGGAGCACCGAGAAGAGCT
*
2095097 AGGAGCAGCCGTGAAGAGCT
1 AGGAGCA-CCGAGAAGAGCT
2095117 AG
1 AG
2095119 CTCCCTGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.35, C:0.17, G:0.40, T:0.07
Consensus pattern (19 bp):
AGGAGCACCGAGAAGAGCT
Found at i:2096688 original size:23 final size:22
Alignment explanation
Indices: 2096658--2096760 Score: 136
Period size: 23 Copynumber: 4.6 Consensus size: 22
2096648 GCATGACCTT
2096658 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
2096680 CGTGCATCGATGCACATTCAAGG
1 -GTGCATCGATGCACATTCAAGG
* * *
2096703 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
2096725 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
*
2096747 ATGCATCGATGCAC
1 GTGCATCGATGCAC
2096761 GGTTAGGTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.21
22 16 0.23
23 39 0.56
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.24
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:2096741 original size:44 final size:42
Alignment explanation
Indices: 2096658--2096779 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 42
2096648 GCATGACCTT
*
2096658 GTGCATCGATGCACATTCAAGGCGTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTC-A-G-GTGTATCGATGCACATTCAAGG
* *
2096703 CGTGCATCGGTGCACCTTCATGGTGTATCGATGCACATTCAAGG
1 -GTGCATCGATGCACATTCA-GGTGTATCGATGCACATTCAAGG
* *
2096747 ATGCATCGATGCACGGTT-AGGTGTATCGATGCA
1 GTGCATCGATGCAC-ATTCAGGTGTATCGATGCA
2096780 TTAAGCACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 14 0.21
43 13 0.19
44 23 0.34
45 2 0.03
46 16 0.24
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (42 bp):
GTGCATCGATGCACATTCAGGTGTATCGATGCACATTCAAGG
Found at i:2096776 original size:20 final size:20
Alignment explanation
Indices: 2096662--2096779 Score: 76
Period size: 23 Copynumber: 5.5 Consensus size: 20
2096652 GACCTTGTGC
*
2096662 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATT-AA-G-GTGT
*
2096685 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATT-AA-G-GTGT
* * *
2096708 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATT-AAGGTGT
*
2096729 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATT-AAGG-TGT
*
2096751 ATCGATGCACGGTT-AGGTGT
1 ATCGATGCAC-ATTAAGGTGT
2096771 ATCGATGCA
1 ATCGATGCA
2096780 TTAAGCACAA
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
20 11 0.13
21 21 0.25
22 13 0.16
23 38 0.46
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (20 bp):
ATCGATGCACATTAAGGTGT
Found at i:2102606 original size:19 final size:19
Alignment explanation
Indices: 2102582--2102714 Score: 230
Period size: 19 Copynumber: 7.0 Consensus size: 19
2102572 AAACCCTCAA
2102582 TGCATCGATGCATGGTATG
1 TGCATCGATGCATGGTATG
2102601 TGCATCGATGCATGGTATG
1 TGCATCGATGCATGGTATG
2102620 TGCATCGATGCATGGTATG
1 TGCATCGATGCATGGTATG
*
2102639 TGCATCAATGCATGGTATG
1 TGCATCGATGCATGGTATG
* *
2102658 TTCATCGATTCATGGTATG
1 TGCATCGATGCATGGTATG
2102677 TGCATCGATGCATGGTATG
1 TGCATCGATGCATGGTATG
*
2102696 TGTATCGATGCATGGTATG
1 TGCATCGATGCATGGTATG
2102715 CATTCAATGT
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 107 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (19 bp):
TGCATCGATGCATGGTATG
Found at i:2104139 original size:19 final size:19
Alignment explanation
Indices: 2104083--2104140 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
2104073 ATTTCTGGTA
* *
2104083 AAAGTCAATGGGTCGGGTC
1 AAAGTGAATGGGTCGGGTT
*
2104102 AAAGTCGACAT--TTCGGGTT
1 AAAGT-GA-ATGGGTCGGGTT
2104121 AAAGTGAATGGGTCGGGTT
1 AAAGTGAATGGGTCGGGTT
2104140 A
1 A
2104141 GGTTGACTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
17 2 0.06
18 2 0.06
19 24 0.77
20 1 0.03
21 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.26
Consensus pattern (19 bp):
AAAGTGAATGGGTCGGGTT
Found at i:2108498 original size:19 final size:22
Alignment explanation
Indices: 2108467--2108526 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
2108457 GAAGTCAATA
* *
2108467 GGTCAGGTTAAAGTCAAC-A-T
1 GGTCGGGTCAAAGTCAACAACT
*
2108487 GTTC-GGTCAAAGTCAATCAACT
1 GGTCGGGTCAAAGTCAA-CAACT
2108509 GGTCGGGTCAAAGTCAAC
1 GGTCGGGTCAAAGTCAAC
2108527 GGATCAGGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 11 0.33
20 4 0.12
21 1 0.03
22 5 0.15
23 12 0.36
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (22 bp):
GGTCGGGTCAAAGTCAACAACT
Found at i:2111467 original size:20 final size:20
Alignment explanation
Indices: 2111419--2111479 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
2111409 TAATTATAAT
* *
2111419 ATAAATATTATATATAT-TG
1 ATAAATATTATTTATATATA
* * *
2111438 GTATATATTATTTCTATATA
1 ATAAATATTATTTATATATA
2111458 ATAAATATTATTTATATATA
1 ATAAATATTATTTATATATA
2111478 AT
1 AT
2111480 TTATGAAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (20 bp):
ATAAATATTATTTATATATA
Found at i:2112824 original size:25 final size:25
Alignment explanation
Indices: 2112777--2112824 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
2112767 TTTAATATAT
* *
2112777 AAAATATATCAAATTAAATTATAAA
1 AAAAAATATCAAATTAAAATATAAA
2112802 AAAAAATATCAAA-TACAAATATA
1 AAAAAATATCAAATTA-AAATATA
2112825 GTTATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (25 bp):
AAAAAATATCAAATTAAAATATAAA
Found at i:2114923 original size:15 final size:15
Alignment explanation
Indices: 2114889--2114934 Score: 60
Period size: 13 Copynumber: 3.1 Consensus size: 15
2114879 TAAAATATAT
*
2114889 TTTTATTATAATTATA
1 TTTT-TTATAATTGTA
2114905 TTTTTTAT--TTGTA
1 TTTTTTATAATTGTA
2114918 TTTTTTATAATTGTA
1 TTTTTTATAATTGTA
2114933 TT
1 TT
2114935 ATAGTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 12 0.44
15 11 0.41
16 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (15 bp):
TTTTTTATAATTGTA
Found at i:2119893 original size:19 final size:18
Alignment explanation
Indices: 2119869--2119907 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
2119859 ATAACATTTT
2119869 TTTAAAAATAAATACACAA
1 TTTAAAAATAAAT-CACAA
**
2119888 TTTAAATCTAAATCACAA
1 TTTAAAAATAAATCACAA
2119906 TT
1 TT
2119908 AAATTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTAAAAATAAATCACAA
Found at i:2119906 original size:18 final size:18
Alignment explanation
Indices: 2119877--2119911 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
2119867 TTTTTAAAAA
2119877 TAAATACACAATTTAAATC
1 TAAATACACAA-TTAAATC
2119896 TAAAT-CACAATTAAAT
1 TAAATACACAATTAAAT
2119912 TTATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATACACAATTAAATC
Found at i:2122007 original size:21 final size:20
Alignment explanation
Indices: 2121967--2122008 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
2121957 TATGCAATTA
2121967 TGCCCAAATCGTTATTTTTT
1 TGCCCAAATCGTTATTTTTT
2121987 TGCCCAAATCGTTATTTTTT
1 TGCCCAAATCGTTATTTTTT
2122007 TG
1 TG
2122009 AGTATTTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (20 bp):
TGCCCAAATCGTTATTTTTT
Found at i:2126525 original size:20 final size:21
Alignment explanation
Indices: 2126473--2126533 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
2126463 TTCCCCTGTG
2126473 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
2126496 GGGGGAATCGGTTCCCTC-AT
1 GGGGGAATCGGTTCCCTCAAA
* *
2126516 GGGGGTATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
2126534 GTCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:2141200 original size:18 final size:20
Alignment explanation
Indices: 2141159--2141205 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 20
2141149 TTGGAAGGGA
2141159 AGTATCGATACTTGTGATTG
1 AGTATCGATACTTGTGATTG
*
2141179 AGTATCGATAC-TGTTA-TG
1 AGTATCGATACTTGTGATTG
2141197 AGTATCGAT
1 AGTATCGAT
2141206 GCCGAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 11 0.42
19 4 0.15
20 11 0.42
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (20 bp):
AGTATCGATACTTGTGATTG
Found at i:2143084 original size:32 final size:32
Alignment explanation
Indices: 2143043--2143109 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
2143033 ACCAGAGAGA
2143043 AAGTCTTAGGCCGCACGATCATAGGTCTTCTC
1 AAGTCTTAGGCCGCACGATCATAGGTCTTCTC
2143075 AAGTCTTAGGCCGCACGATCATAGGTCTTCTC
1 AAGTCTTAGGCCGCACGATCATAGGTCTTCTC
2143107 AAG
1 AAG
2143110 GTCAACTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (32 bp):
AAGTCTTAGGCCGCACGATCATAGGTCTTCTC
Found at i:2144944 original size:23 final size:23
Alignment explanation
Indices: 2144909--2144969 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
2144899 ATATTATTCA
*
2144909 TACAATATCGATATTGTTCATCC
1 TACAACATCGATATTGTTCATCC
*
2144932 TACAACATTGATATTGTTCATCC
1 TACAACATCGATATTGTTCATCC
2144955 TACAACATCGATATT
1 TACAACATCGATATT
2144970 TTTCTTCTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (23 bp):
TACAACATCGATATTGTTCATCC
Found at i:2145007 original size:20 final size:20
Alignment explanation
Indices: 2144960--2145007 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
2144950 CATCCTACAA
*
2144960 CATCGATATTTTTCTTCTAG
1 CATCGATATTGTTCTTCTAG
* *
2144980 TATTGATATTGTTCTTGC-AG
1 CATCGATATTGTTCTT-CTAG
2145000 CATCGATA
1 CATCGATA
2145008 AGGTACTGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.46
Consensus pattern (20 bp):
CATCGATATTGTTCTTCTAG
Found at i:2145576 original size:2 final size:2
Alignment explanation
Indices: 2145569--2145594 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2145559 GAACATTTTG
2145569 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2145595 TATTTTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2147742 original size:20 final size:20
Alignment explanation
Indices: 2147717--2147793 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
2147707 AAATGACCAA
2147717 CAAATTCGCAACGCGAACTC
1 CAAATTCGCAACGCGAACTC
**
2147737 CAAATTCGCAACAAGAACTC
1 CAAATTCGCAACGCGAACTC
* * **
2147757 CAATTTCGCAAC-CCAGTTTC
1 CAAATTCGCAACGCGA-ACTC
2147777 CAAATTCGCAACGCGAA
1 CAAATTCGCAACGCGAA
2147794 TATGTAAATC
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 1 0.02
20 42 0.93
21 2 0.04
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
CAAATTCGCAACGCGAACTC
Found at i:2147832 original size:21 final size:21
Alignment explanation
Indices: 2147806--2147845 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2147796 TGTAAATCGT
* *
2147806 GTTGCGATTTTCTAAATTCAC
1 GTTGCGATGTTCCAAATTCAC
2147827 GTTGCGATGTTCCAAATTC
1 GTTGCGATGTTCCAAATTC
2147846 GCAACACGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (21 bp):
GTTGCGATGTTCCAAATTCAC
Found at i:2147887 original size:20 final size:20
Alignment explanation
Indices: 2147839--2148110 Score: 217
Period size: 20 Copynumber: 13.6 Consensus size: 20
2147829 TGCGATGTTC
2147839 CAAATTCGCAACAC-GAA-T
1 CAAATTCGCAACACAGAAGT
2147857 CTGTAAA-TCGCAACACAGAAGT
1 C---AAATTCGCAACACAGAAGT
*
2147879 CAAATTCGCAACGC-GATAGT
1 CAAATTCGCAACACAGA-AGT
*
2147899 CAAATTCGCAACACTGAAGT
1 CAAATTCGCAACACAGAAGT
*
2147919 CAAATTCGCAACACAAAAGT
1 CAAATTCGCAACACAGAAGT
*
2147939 CAAATTCGCAACGC-GAA-T
1 CAAATTCGCAACACAGAAGT
*
2147957 CTGTAAA-TCGCAACGCA-AATTTGT
1 C---AAATTCGCAACACAGAA---GT
*
2147981 -AAA-TCGCTACACAGAAGT
1 CAAATTCGCAACACAGAAGT
* *
2147999 CAAATTTGTAACACAGAAGT
1 CAAATTCGCAACACAGAAGT
*
2148019 CAAATTCGCAACGC-GATAGT
1 CAAATTCGCAACACAGA-AGT
** *
2148039 CAAATTCGCAACATTGAATTT
1 CAAATTCGCAACACAGAA-GT
*
2148060 CAAATTCGCAACACAAAAGT
1 CAAATTCGCAACACAGAAGT
*
2148080 CAAATTCGCAACGC-GAAAGT
1 CAAATTCGCAACACAG-AAGT
2148100 CAAATTCGCAA
1 CAAATTCGCAA
2148111 AGCGCGTTTA
Statistics
Matches: 208, Mismatches: 23, Indels: 44
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.02
19 12 0.06
20 157 0.75
21 31 0.15
22 2 0.01
24 1 0.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
CAAATTCGCAACACAGAAGT
Found at i:2147962 original size:100 final size:98
Alignment explanation
Indices: 2147839--2148110 Score: 318
Period size: 100 Copynumber: 2.7 Consensus size: 98
2147829 TGCGATGTTC
2147839 CAAATTCGCAACACGAATCTGTAAATCGCAACACAGAAGTCAAATTCGCAACGCGATAGTCAAAT
1 CAAATTCGCAACACGAATCTGTAAATCGCAACACA-AAGTCAAATTCGCAACGCGA-AGTCAAAT
*
2147904 TCGCAACACTGAAGTCAAATTCGCAACACAAAAGT
64 TCGCAACACAGAAGTCAAATTCGCAACACAAAAGT
* * * *
2147939 CAAATTCGCAACGCGAATCTGTAAATCGCAACGCAAATTTGT-AAA-TCGCTACACAGAAGTCAA
1 CAAATTCGCAACACGAATCTGTAAATCGCAACACAAA---GTCAAATTCGCAACGC-GAAGTCAA
* * * * *
2148002 ATTTGTAACACAGAAGTCAAATTCGCAACGCGATAGT
62 ATTCGCAACACAGAAGTCAAATTCGCAACACAAAAGT
*
2148039 CAAATTCGCAACATTGAAT-T-TCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAAAGTCA
1 CAAATTCGCAACA-CGAATCTGT-AAA-TCGCAACAC-AAAGTCAAATTCGCAACGCG-AAGTCA
2148102 AATTCGCAA
61 AATTCGCAA
2148111 AGCGCGTTTA
Statistics
Matches: 144, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
99 5 0.03
100 97 0.67
101 37 0.26
102 5 0.03
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (98 bp):
CAAATTCGCAACACGAATCTGTAAATCGCAACACAAAGTCAAATTCGCAACGCGAAGTCAAATTC
GCAACACAGAAGTCAAATTCGCAACACAAAAGT
Found at i:2148288 original size:22 final size:22
Alignment explanation
Indices: 2148263--2148320 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
2148253 TCACTCTCTA
*
2148263 CGACGATATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
* *
2148285 CGACAAAATCCATCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
*
2148307 CGGCGAAATCCGTC
1 CGACGAAATCCGTC
2148321 TATCTCCATC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.43, G:0.14, T:0.19
Consensus pattern (22 bp):
CGACGAAATCCGTCCCCATCTC
Found at i:2148690 original size:20 final size:19
Alignment explanation
Indices: 2148660--2149096 Score: 160
Period size: 20 Copynumber: 21.8 Consensus size: 19
2148650 TTGTAACAAA
*
2148660 GAAGTCAAATTCGCAACGC
1 GAAGTCAAATTCGCAACAC
* **
2148679 GATAGTCCAATTTACAACAC
1 GA-AGTCAAATTCGCAACAC
2148699 TGAAGTCAAATTCGCAACAC
1 -GAAGTCAAATTCGCAACAC
* *
2148719 AAAAGTCAAATTCGCAACGC
1 -GAAGTCAAATTCGCAACAC
*
2148739 GAA-TCTGTAAA-TCGCAACGC
1 GAAGTC---AAATTCGCAACAC
***
2148759 GAA-TCTGTAAA-TCGCAATGT
1 GAAGTC---AAATTCGCAACAC
2148779 GAA-TCTGTAAA-TCGCAACAC
1 GAAGTC---AAATTCGCAACAC
*
2148799 AGAAGTTAAATTCGCAACAC
1 -GAAGTCAAATTCGCAACAC
* *
2148819 ATAAGTCAAATTCGCAACGC
1 -GAAGTCAAATTCGCAACAC
*
2148839 GATAGTCAAATTGGCAACAC
1 GA-AGTCAAATTCGCAACAC
* *
2148859 AAAAGTCAAATTCGCAACGC
1 -GAAGTCAAATTCGCAACAC
**
2148879 GAATTTGT-AAATT-GCAATGC
1 GAA---GTCAAATTCGCAACAC
*
2148899 GAATTTGT-AAATT-GCAACGC
1 GAA---GTCAAATTCGCAACAC
2148919 GAATTTGT-AAA-TCGCAACAC
1 GAA---GTCAAATTCGCAACAC
* *
2148939 ATAAGTCAAATTCGCAATAC
1 -GAAGTCAAATTCGCAACAC
* * *
2148959 ATAAGTCAAATTCGTAACGC
1 -GAAGTCAAATTCGCAACAC
* *
2148979 AATAGTCAAATTCGCAACGC
1 GA-AGTCAAATTCGCAACAC
*
2148999 GATAGTCAAATTTGCAACAC
1 GA-AGTCAAATTCGCAACAC
* *
2149019 TGAATTTCAAATTCGTAACAC
1 -GAA-GTCAAATTCGCAACAC
* * *
2149040 AAAAGTCAAATTCGGAACGC
1 -GAAGTCAAATTCGCAACAC
* * *
2149060 GATAGTAAAATTCACAACGC
1 GA-AGTCAAATTCGCAACAC
*
2149080 AAAAGTCAAATTCGCAA
1 -GAAGTCAAATTCGCAA
2149097 AGCGCATTTA
Statistics
Matches: 341, Mismatches: 55, Indels: 43
0.78 0.13 0.10
Matches are distributed among these distances:
18 4 0.01
19 16 0.05
20 284 0.83
21 34 0.10
22 3 0.01
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (19 bp):
GAAGTCAAATTCGCAACAC
Found at i:2148774 original size:60 final size:59
Alignment explanation
Indices: 2148605--2148775 Score: 136
Period size: 60 Copynumber: 2.8 Consensus size: 59
2148595 ACCCAGTTTC
* * * * * *
2148605 CAAATTCGCAACGTGAATATGTAAATCGCAACGCAAATTTTTAAATTGTAACAAAGAAGT
1 CAAATTCGCAACGCGAATCTGTAAATCGCAACGCGAA-TTGTAAATCGCAACAAAGAAGT
* * ** *
2148665 CAAATTCGCAACGCGATAGTC--CAATTTACAACACTGAA--GTCAAATTCGCAACACAA-AAGT
1 CAAATTCGCAACGCGA-A-TCTGTAAATCGCAACGC-GAATTGT-AAA-TCGCAACA-AAGAAGT
2148725 CAAATTCGCAACGCGAATCTGTAAATCGCAACGCGAATCTGTAAATCGCAA
1 CAAATTCGCAACGCGAATCTGTAAATCGCAACGCGAAT-TGTAAATCGCAA
2148776 TGTGAATCTG
Statistics
Matches: 84, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
58 3 0.04
59 7 0.08
60 63 0.75
61 8 0.10
62 3 0.04
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (59 bp):
CAAATTCGCAACGCGAATCTGTAAATCGCAACGCGAATTGTAAATCGCAACAAAGAAGT
Found at i:2148817 original size:120 final size:120
Alignment explanation
Indices: 2148693--2149000 Score: 383
Period size: 120 Copynumber: 2.6 Consensus size: 120
2148683 GTCCAATTTA
*
2148693 CAACAC-TGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGT-AAA-TCGCA
1 CAACACAT-AAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGC-AAT-AGTCAAATTCGCA
*
2148755 ACGCGAATCTGTAAATCGCAATGTGAATCTGTAAATCGCAACACAGAA-GT-TAAATTCG
63 ACGCGAATCTGTAAATCGCAATGCGAATCTGTAAATCGCAACAC-GAATGTGTAAA-TCG
* * * * * *
2148813 CAACACATAAGTCAAATTCGCAACGCGATAGTCAAATTGGCAACACAAAAGTCAAATTCGCAACG
1 CAACACATAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACG
* * * * * *
2148878 CGAATTTGTAAATTGCAATGCGAATTTGTAAATTGCAACGCGAATTTGTAAATCG
66 CGAATCTGTAAATCGCAATGCGAATCTGTAAATCGCAACACGAATGTGTAAATCG
* * *
2148933 CAACACATAAGTCAAATTCGCAATACATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACG
1 CAACACATAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACG
2148998 CGA
66 CGA
2149001 TAGTCAAATT
Statistics
Matches: 160, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
118 2 0.01
119 8 0.05
120 145 0.91
121 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.22
Consensus pattern (120 bp):
CAACACATAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACG
CGAATCTGTAAATCGCAATGCGAATCTGTAAATCGCAACACGAATGTGTAAATCG
Found at i:2148834 original size:40 final size:39
Alignment explanation
Indices: 2148790--2149096 Score: 184
Period size: 40 Copynumber: 7.6 Consensus size: 39
2148780 AATCTGTAAA
* *
2148790 TCGCAACACAGAAGTTAAATTCGCAACACATAAGTCAAAT
1 TCGCAACGC-GAAGTCAAATTCGCAACACATAAGTCAAAT
* *
2148830 TCGCAACGCGATAGTCAAATTGGCAACACAAAAGTCAAAT
1 TCGCAACGCGA-AGTCAAATTCGCAACACATAAGTCAAAT
**
2148870 TCGCAACGCGAATTTGT-AAATT-GCAATGCGA-ATTTGT-AAAT
1 TCGCAACGCGAA---GTCAAATTCGCAA--C-ACATAAGTCAAAT
2148911 T-GCAACGCGAATTTGT-AAA-TCGCAACACATAAGTCAAAT
1 TCGCAACGCGAA---GTCAAATTCGCAACACATAAGTCAAAT
** * * *
2148950 TCGCAATACATAAGTCAAATTCGTAACGCA-ATAGTCAAAT
1 TCGCAACGC-GAAGTCAAATTCGCAACACATA-AGTCAAAT
* *
2148990 TCGCAACGCGATAGTCAAATTTGCAACAC-TGAATTTCAAAT
1 TCGCAACGCGA-AGTCAAATTCGCAACACAT-AA-GTCAAAT
* * * * * *
2149031 TCGTAACACAAAAGTCAAATTCGGAACGCGAT-AGTAAAAT
1 TCGCAACGC-GAAGTCAAATTCGCAACAC-ATAAGTCAAAT
* *
2149071 TCACAACGCAAAAGTCAAATTCGCAA
1 TCGCAACGC-GAAGTCAAATTCGCAA
2149097 AGCGCATTTA
Statistics
Matches: 212, Mismatches: 33, Indels: 44
0.73 0.11 0.15
Matches are distributed among these distances:
37 1 0.00
38 7 0.03
39 14 0.07
40 140 0.66
41 41 0.19
42 7 0.03
43 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (39 bp):
TCGCAACGCGAAGTCAAATTCGCAACACATAAGTCAAAT
Found at i:2148846 original size:140 final size:140
Alignment explanation
Indices: 2148610--2149016 Score: 512
Period size: 140 Copynumber: 2.9 Consensus size: 140
2148600 GTTTCCAAAT
* * * * * *
2148610 TCGCAACGTGAATATGTAAATCGCAACGCAAATTTTTAAATTGTAACAAAGAAGTCAAATTCGCA
1 TCGCAACGCGAATATGTAAATCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCA
* * ** *
2148675 ACGCGAT-AGTCCAATTTACAACACTGA-AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACG
66 ACAC-ATAAGTCAAATTCGCAACGC-GATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACG
2148738 CGAATCTGTAAA
129 CGAATCTGTAAA
* * * * *
2148750 TCGCAACGCGAATCTGTAAATCGCAATGTGAATCTGTAAATCGCAACACAGAAGTTAAATTCGCA
1 TCGCAACGCGAATATGTAAATCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCA
*
2148815 ACACATAAGTCAAATTCGCAACGCGATAGTCAAATTGGCAACACAAAAGTCAAATTCGCAACGCG
66 ACACATAAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCG
*
2148880 AATTTGTAAA
131 AATCTGTAAA
* * * * *
2148890 TTGCAATGCGAATTTGTAAATTGCAACGCGAATTTGTAAATCGCAACACATAAGTCAAATTCGCA
1 TCGCAACGCGAATATGTAAATCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCA
* * * * * * *
2148955 ATACATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTTGCAAC
66 ACACATAAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAAC
2149017 ACTGAATTTC
Statistics
Matches: 230, Mismatches: 35, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
139 4 0.02
140 226 0.98
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (140 bp):
TCGCAACGCGAATATGTAAATCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCA
ACACATAAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCG
AATCTGTAAA
Found at i:2148874 original size:100 final size:100
Alignment explanation
Indices: 2148693--2148895 Score: 234
Period size: 100 Copynumber: 2.0 Consensus size: 100
2148683 GTCCAATTTA
* * *
2148693 CAACACTGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGTAAATCGCAACG
1 CAACACAGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCAGTAAATCGCAACA
** * *
2148758 CGAATCTGTAAATCGCAATGTGAATCTGTAAATCG
66 CGAATAAGTAAATCGCAACGCGAATCTGTAAATCG
* * *
2148793 CAACACAGAAGTTAAATTCGCAACACATAAGTCAAATTCGCAACGCG-AT-AGTCAAATTGGCAA
1 CAACACAGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCAGT-AAA-TCGCAA
* *
2148856 CAC-AA-AAGTCAAATTCGCAACGCGAATTTGTAAATTG
64 CACGAATAAGT-AAA-TCGCAACGCGAATCTGTAAATCG
2148893 CAA
1 CAA
2148896 TGCGAATTTG
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
98 4 0.05
99 10 0.11
100 73 0.84
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (100 bp):
CAACACAGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCAGTAAATCGCAACA
CGAATAAGTAAATCGCAACGCGAATCTGTAAATCG
Found at i:2148978 original size:60 final size:61
Alignment explanation
Indices: 2148930--2149077 Score: 167
Period size: 61 Copynumber: 2.4 Consensus size: 61
2148920 AATTTGTAAA
*
2148930 TCGCAACAC-ATAAGTCAAATTCGCAATACAT-AA-GTCAAATTCGTAACGCAATAGTCAAAT
1 TCGCAACACGAT-AGTCAAATTCGCAACAC-TGAATGTCAAATTCGTAACGCAATAGTCAAAT
* * * * *
2148990 TCGCAACGCGATAGTCAAATTTGCAACACTGAATTTCAAATTCGTAACACAAAAGTCAAAT
1 TCGCAACACGATAGTCAAATTCGCAACACTGAATGTCAAATTCGTAACGCAATAGTCAAAT
* * * *
2149051 TCGGAACGCGATAGTAAAATTCACAAC
1 TCGCAACACGATAGTCAAATTCGCAAC
2149078 GCAAAAGTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
59 1 0.01
60 25 0.33
61 49 0.65
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.23
Consensus pattern (61 bp):
TCGCAACACGATAGTCAAATTCGCAACACTGAATGTCAAATTCGTAACGCAATAGTCAAAT
Found at i:2149014 original size:120 final size:119
Alignment explanation
Indices: 2148693--2149096 Score: 378
Period size: 120 Copynumber: 3.4 Consensus size: 119
2148683 GTCCAATTTA
* *
2148693 CAACAC-TGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGT-AAA-TCGCA
1 CAACACAT-AAGTCAAATTCGCAACACATAAGTCAAATTCGCAACGC-AAT-AGTCAAATTCGCA
* *
2148755 ACGCGAATCTGTAAATCGCAATGTGAATCTGTAAATCGCAACACAGAAGTTAAATTCG
63 ACGCGAAT-TGTAAATTGCAATGCGAATCTGTAAATCGCAACACAGAAGTTAAATTCG
* * * *
2148813 CAACACATAAGTCAAATTCGCAACGCGAT-AGTCAAATTGGCAACACAAAAGTCAAATTCGCAAC
1 CAACACATAAGTCAAATTCGCAACAC-ATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAAC
* * * *
2148877 GCGAATTTGTAAATTGCAATGCGAATTTGTAAATTGCAACGC-GAATTTGTAAA-TCG
65 GCGAA-TTGTAAATTGCAATGCGAATCTGTAAATCGCAACACAGAA-GT-TAAATTCG
* *
2148933 CAACACATAAGTCAAATTCGCAATACATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACG
1 CAACACATAAGTCAAATTCGCAACACATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACG
* ** * * *
2148998 CG-ATAGTCAAATTTGCAACACTGAAT-T-TCAAATTCGTAACACAAAAGTCAAATTCG
66 CGAATTGT-AAA-TTGCAATGC-GAATCTGT-AAA-TCGCAACACAGAAGTTAAATTCG
* * * * * *
2149054 GAACGCGAT-AGTAAAATTCACAACGCAAAAGTCAAATTCGCAA
1 CAACAC-ATAAGTCAAATTCGCAACACATAAGTCAAATTCGCAA
2149097 AGCGCATTTA
Statistics
Matches: 233, Mismatches: 35, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
118 5 0.02
119 15 0.06
120 156 0.67
121 53 0.23
122 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (119 bp):
CAACACATAAGTCAAATTCGCAACACATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACG
CGAATTGTAAATTGCAATGCGAATCTGTAAATCGCAACACAGAAGTTAAATTCG
Found at i:2149051 original size:140 final size:141
Alignment explanation
Indices: 2148605--2149096 Score: 421
Period size: 140 Copynumber: 3.5 Consensus size: 141
2148595 ACCCAGTTTC
** * * * * *
2148605 CAAATTCGCAACGTGAATATGTAAA-TCGCAACGCAAATTTTTAAATTGTAACA-AAGAAGTCAA
1 CAAATT-GCAACACGAATAAGTAAATTCGCAACGCGAATTTGTAAATCGCAACACAA-AAGTCAA
* * ** * *
2148668 ATTCGCAACGCGAT-AGTCCAATTTACAACACTGA-AGTCAAATTCGCAACACAAAAGTCAAATT
64 ATTCGCAACAC-ATAAGTCAAATTCGCAACGC-AATAGTCAAATTCGCAACACAAAAGTCAAATT
* *
2148731 CGCAACGCGAATCTG
127 CGCAACACGAATTTG
* * * ** * * * * *
2148746 TAAATCGCAACGCGAATCTGTAAA-TCGCAATGTGAATCTGTAAATCGCAACACAGAAGTTAAAT
1 CAAATTGCAACACGAATAAGTAAATTCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
* *
2148810 TCGCAACACATAAGTCAAATTCGCAACGCGATAGTCAAATTGGCAACACAAAAGTCAAATTCGCA
66 TCGCAACACATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCA
*
2148875 ACGCGAATTTG
131 ACACGAATTTG
* ** ** *
2148886 TAAATTGCAATGCGAATTTGTAAATT-GCAACGCGAATTTGTAAATCGCAACACATAAGTCAAAT
1 CAAATTGCAACACGAATAAGTAAATTCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
* * * * * *
2148950 TCGCAATACATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTTGCA
66 TCGCAACACATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCA
2149015 ACACTGAATTT-
131 ACAC-GAATTTG
* * * * *
2149026 CAAATTCGTAACAC-AA-AAGTCAAATTCGGAACGCG-A-TAGTAAAATTCACAACGCAAAAGTC
1 CAAATT-GCAACACGAATAAGT-AAATTCGCAACGCGAATTTGT-AAA-TCGCAACACAAAAGTC
2149087 AAATTCGCAA
62 AAATTCGCAA
2149097 AGCGCATTTA
Statistics
Matches: 293, Mismatches: 48, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
139 9 0.03
140 238 0.81
141 46 0.16
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (141 bp):
CAAATTGCAACACGAATAAGTAAATTCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
TCGCAACACATAAGTCAAATTCGCAACGCAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCA
ACACGAATTTG
Found at i:2149114 original size:19 final size:20
Alignment explanation
Indices: 2149090--2149130 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
2149080 AAAAGTCAAA
*
2149090 TTCGCAAAGCGCA-TTTATT
1 TTCGCAAAGCGAATTTTATT
*
2149109 TTCGCAACGCGAATTTTATT
1 TTCGCAAAGCGAATTTTATT
2149129 TT
1 TT
2149131 ATTTTCGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (20 bp):
TTCGCAAAGCGAATTTTATT
Found at i:2149286 original size:22 final size:22
Alignment explanation
Indices: 2149261--2149302 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2149251 GCGACATCCG
2149261 TCCCCATCTCCAACAAAATCTA
1 TCCCCATCTCCAACAAAATCTA
* *
2149283 TCCCCATCTCCGACGAAATC
1 TCCCCATCTCCAACAAAATC
2149303 CGTCTTTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.43, G:0.05, T:0.21
Consensus pattern (22 bp):
TCCCCATCTCCAACAAAATCTA
Found at i:2149639 original size:20 final size:19
Alignment explanation
Indices: 2149616--2150002 Score: 218
Period size: 20 Copynumber: 19.3 Consensus size: 19
2149606 AATTTGTAAA
2149616 TCGCAACACAGAAGTCAAAT
1 TCGCAACAC-GAAGTCAAAT
2149636 TCGCAACACGATAGTCAAAT
1 TCGCAACACGA-AGTCAAAT
*
2149656 TCGCAACACAAAAGTCAAAT
1 TCGCAACAC-GAAGTCAAAT
*
2149676 TCGCAACGCGAA-TCTGTAAA-
1 TCGCAACACGAAGTC---AAAT
* *
2149696 TCGCAACGCGAA-TCTATAAA
1 TCGCAACACGAAGTC-A-AAT
2149716 TCGCAACACGAATTTGT-AAAT
1 TCGCAACACGAA---GTCAAAT
2149737 T-GCAACACAGAAGTCAAAT
1 TCGCAACAC-GAAGTCAAAT
2149756 TCGCAACACAGAAGTCAAAT
1 TCGCAACAC-GAAGTCAAAT
*
2149776 TCGAAACACGAAAGTCAAAT
1 TCGCAACACG-AAGTCAAAT
** * *
2149796 TCAAAACACAAAAGTTAAAT
1 TCGCAACAC-GAAGTCAAAT
* *
2149816 TC-CTATCGCGAA-TCTGTAAA-
1 TCGC-AACACGAAGTC---AAAT
*
2149836 TCGCAACGCGAATTTGT-AAA-
1 TCGCAACACGAA---GTCAAAT
* *
2149856 TCACAACACAGAAGTCATAT
1 TCGCAACAC-GAAGTCAAAT
* *
2149876 TCGCAACACAAAAGTTAAAT
1 TCGCAACAC-GAAGTCAAAT
*
2149896 TCGCAACGCGATAGTCAAAT
1 TCGCAACACGA-AGTCAAAT
* *
2149916 TCGCAACACTAAATTTCAAAT
1 TCGCAACAC-GAA-GTCAAAT
* *
2149937 TTGCAACGCGATAGTCAAAT
1 TCGCAACACGA-AGTCAAAT
*
2149957 TCGCAACGCGATAGTCAAAT
1 TCGCAACACGA-AGTCAAAT
**
2149977 TCGCAACGTGAAAGTCAAAT
1 TCGCAACACG-AAGTCAAAT
2149997 TCGCAA
1 TCGCAA
2150003 AGCACGTTTA
Statistics
Matches: 300, Mismatches: 34, Indels: 66
0.75 0.09 0.17
Matches are distributed among these distances:
18 9 0.03
19 17 0.06
20 238 0.79
21 33 0.11
22 1 0.00
24 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.21
Consensus pattern (19 bp):
TCGCAACACGAAGTCAAAT
Found at i:2149764 original size:120 final size:119
Alignment explanation
Indices: 2149596--2149924 Score: 437
Period size: 120 Copynumber: 2.7 Consensus size: 119
2149586 GTTTCCAAAT
2149596 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACACGATAGTCAAATTCGCA
1 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACACGA-AGTCAAATTCGCA
* * * *
2149661 ACACAAAAGTCAAATTCGCAACGCGAATCTGTAAA-TCGC-AACGCGAATCTATAAA
65 ACACGAAAGTCAAATTCGCAACACAAAACT-TAAATTC-CTAACGCGAATCTATAAA
* * *
2149716 TCGCAACACGAATTTGTAAATTGCAACACAGAAGTCAAATTCGCAACACAGAAGTCAAATTCGAA
1 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACAC-GAAGTCAAATTCGCA
** * * *
2149781 ACACGAAAGTCAAATTCAAAACACAAAAGTTAAATTCCTATCGCGAATCTGTAAA
65 ACACGAAAGTCAAATTCGCAACACAAAACTTAAATTCCTAACGCGAATCTATAAA
* * * *
2149836 TCGCAACGCGAATTTGTAAATCACAACACAGAAGTCATATTCGCAACACAAAAGTTAAATTCGCA
1 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACAC-GAAGTCAAATTCGCA
* *
2149901 ACGCGATAGTCAAATTCGCAACAC
65 ACACGAAAGTCAAATTCGCAACAC
2149925 TAAATTTCAA
Statistics
Matches: 183, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
119 5 0.03
120 176 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (119 bp):
TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACACGAAGTCAAATTCGCAA
CACGAAAGTCAAATTCGCAACACAAAACTTAAATTCCTAACGCGAATCTATAAA
Found at i:2149816 original size:140 final size:140
Alignment explanation
Indices: 2149616--2149924 Score: 421
Period size: 140 Copynumber: 2.2 Consensus size: 140
2149606 AATTTGTAAA
* **
2149616 TCGCAACACAGAAGTCAAATTCGCAACACGATAGTCAAATTCGCAACACAAAAGTCAAATTCGC-
1 TCGCAACACAGAAGTCAAATTCGCAACACGAAAGTCAAATTCAAAACACAAAAGTCAAATTC-CT
*
2149680 AACGCGAATCTGTAAATCGCAACGCGAATCTATAAATCGCAACAC-GAATTTGT-AAATT-GCAA
65 AACGCGAATCTGTAAATCGCAACGCGAATCTATAAATCACAACACAGAA---GTCAAATTCGCAA
*
2149742 CACAGAAGTCAAAT
127 CACAAAAGTCAAAT
* *
2149756 TCGCAACACAGAAGTCAAATTCGAAACACGAAAGTCAAATTCAAAACACAAAAGTTAAATTCCTA
1 TCGCAACACAGAAGTCAAATTCGCAACACGAAAGTCAAATTCAAAACACAAAAGTCAAATTCCTA
* * * *
2149821 TCGCGAATCTGTAAATCGCAACGCGAATTTGTAAATCACAACACAGAAGTCATATTCGCAACACA
66 ACGCGAATCTGTAAATCGCAACGCGAATCTATAAATCACAACACAGAAGTCAAATTCGCAACACA
*
2149886 AAAGTTAAAT
131 AAAGTCAAAT
*
2149896 TCGCAACGC-GATAGTCAAATTCGCAACAC
1 TCGCAACACAGA-AGTCAAATTCGCAACAC
2149925 TAAATTTCAA
Statistics
Matches: 150, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
138 2 0.01
139 7 0.05
140 138 0.92
141 3 0.02
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (140 bp):
TCGCAACACAGAAGTCAAATTCGCAACACGAAAGTCAAATTCAAAACACAAAAGTCAAATTCCTA
ACGCGAATCTGTAAATCGCAACGCGAATCTATAAATCACAACACAGAAGTCAAATTCGCAACACA
AAAGTCAAAT
Found at i:2149904 original size:986 final size:967
Alignment explanation
Indices: 2147867--2150002 Score: 2612
Period size: 986 Copynumber: 2.2 Consensus size: 967
2147857 CTGTAAATCG
* * * *
2147867 CAACACAGAAGTCAAATTCGCAACGCG-A-TAGTCAAATTCGCAACACTGAAGTCAAATTCGCAA
1 CAACACAAAAGTCAAATTCGCAACGCGAATTTGT-AAA-TCACAACAC-GAAGTCATATTCGCAA
* * * *
2147930 CACAAAAGTCAAATTCGCAACGCGAATCTGTAAATCGCAACGCA-AATTTGT-AAA-TCGCTACA
63 CACAAAAGTTAAATTCGCAACGCGAATTTGTAAATCGCAACACATAA--TGTCAAATTCGCAACA
* * * *
2147992 CAGAAGTCAAATTTGTAACACAGA-AGTCAAATTCGCAACGCGATAGTCAAATTCGCAACATTGA
126 CATAAGTCAAATTCGTAACGCA-ATAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACTGA
* *
2148056 ATTTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAAAGTCAAATTCGCAAAGCGCGTTTA
190 ATTTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCAAAAGTCAAATTCGCAAAGCGCATTTA
* * *
2148121 TTTTCGCAATGCGAATTTCATTTTATTTTTGAATTCGAAACACAATATTAATTTCGTAACACAAA
255 TTTTCGCAACGCGAATTTCATTTTATTTTCGAATTCGAAACACAATATTAATTTCGCAACACAAA
*
2148186 TGTAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCAGTCCCATCTCCATC
320 TGTAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCAATCCCATCTCCATC
* * *
2148251 TCTCACTCTCTACGACGATATCCGTCCCCATCTCCGACAAAATCCATCCCCATCTCCGGCGAAAT
385 TCTCACTCTCTACGACGACATCCGTCCCCATCTCCAACAAAATCCATCCCCATCTCCGACGAAAT
* * *
2148316 CCGTCTATCTCCATCTCTCAGAGCAACCCTCACAACCATTCACGGTCAAAAATGGAAAATTAACC
450 CCGTCTATCTCCATCTCTCAGAGCAACCCTCACAACCATTCACAGTCAAAAATGGAAAATCAACA
2148381 TCCGATGGTTAGTTTTTTTAATCTCTTATTTTTATTTTTGAAATTTTTGTATTATTATTAGATTT
515 TCCGATGGTTAGTTTTTTTAATCTCTTATTTTTATTTTTGAAATTTTTGTATTATTATTAGATTT
*
2148446 TTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAACCTCAGTGACCGAAAAT
580 TTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAAACTCAGTGACCGAAAAT
* * * *
2148511 GCCTTATAATATATGATTTTAACTAACTTTTTTTGGATTTGCGAAAATGACCAACAAATTCGCAA
645 GCCTTATAATATACGATTTTAACCAACTTTTTTTGGATTTACGAAAATGACCAACAAATTCGAAA
* *
2148576 CGCGAACTCCAATTTCGCAACCCAGTTTCCAAATTCGCAACGTGAATATGTAAATCGCAACGCAA
710 CGCGAACTCCAATTTCACAACCCAGTTTCCAAATTCGCAACGCGAATATGTAAATCGCAAC-C--
* * * **
2148641 ATTTTTAAATTGTAACAAAGAAGTCAAATTCGCAACGCGATAGTCCAATTTACAACACTGAAGTC
772 ------------T-AC-AAGAAGTCAAATTCGCAACACGATAGTCAAATTCACAACACAAAAGTC
* *
2148706 AAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGTAAATCGCAACGCGAATCTGTAAAT
823 AAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTATAAATCGCAACACGAATCTGTAAAT
*** * * **
2148771 CGCAATGTGAATCTGTAAATCGCAACACAGAAGTTAAATTCGCAACACATAAGTCAAATTCGCAA
888 CGCAAACAGAATC--TAAATCGCAACACAGAAGTCAAATTCGAAACACATAAGTCAAATTCAAAA
* * * *
2148836 CGCGATAGTCAAATTGG
951 CACAAAAGTCAAATTGC
** **
2148853 CAACACAAAAGTCAAATTCGCAACGCGAATTTGTAAATTGCAATGCG-A---AT-TT--------
1 CAACACAAAAGTCAAATTCGCAACGCGAATTTGTAAATCACAACACGAAGTCATATTCGCAACAC
*
2148905 ----G-TAAATT-GCAACGCGAATTTGTAAATCGCAACACATAA-GTCAAATTCGCAATACATAA
66 AAAAGTTAAATTCGCAACGCGAATTTGTAAATCGCAACACATAATGTCAAATTCGCAACACATAA
*
2148963 GTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTTGCAACACTGAATTTCA
131 GTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACTGAATTTCA
*
2149028 AATTCGTAACACAAAAGTCAAATTCGGAACGCGATAGTAAAATTCACAACGCAAAAGTCAAATTC
196 AATTCGCAACACAAAAGTCAAATT-------C----G---------CAACGCAAAAGTCAAATTC
*
2149093 GCAAAGCGCATTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAACACAATATTAA
241 GCAAAGCGCATTTATTTTCGCAACGCGAATTTCATTTTATTTTCGAATTCGAAACACAATATTAA
2149158 TTTCGCAACACAAATGTAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCA
306 TTTCGCAACACAAATGTAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCA
* * *
2149223 ATCTCATCTCCATCTCTCACTCTCTACGGCGACATCCGTCCCCATCTCCAACAAAATCTATCCCC
371 ATCCCATCTCCATCTCTCACTCTCTACGACGACATCCGTCCCCATCTCCAACAAAATCCATCCCC
* * * *
2149288 ATCTCCGACGAAATCCGTCTTTCTCCATCTGTCAGAGCAATCCTCACAACCATTCACAGTCAGAA
436 ATCTCCGACGAAATCCGTCTATCTCCATCTCTCAGAGCAACCCTCACAACCATTCACAGTCAAAA
*
2149353 ATGGAAAATCAATCAT-CGA-GAGTTAGTTTTTTTAATCTCTT-TTTTTTTATTTTGAAATTTTT
501 ATGGAAAATCAA-CATCCGATG-GTTAGTTTTTTTAATCTCTTATTTTTAT-TTTTGAAATTTTT
*
2149415 GTCTTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAA
563 GTATTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAA
* *
2149480 ACTTAGTGACCGAAAATTCCTTATAATATACGATTTTAACCAACTTTTTTTGGATTTACGAAAAT
628 ACTCAGTGACCGAAAATGCCTTATAATATACGATTTTAACCAACTTTTTTTGGATTTACGAAAAT
* *
2149545 GACCAACAAATTCGAAACGCGAACTCCAATTTCACAACTCAGTTTCCAAATTCGCAACGCGAATT
693 GACCAACAAATTCGAAACGCGAACTCCAATTTCACAACCCAGTTTCCAAATTCGCAACGCGAATA
*
2149610 TGTAAATCGCAA-C-AC-AGAAGTCAAATTCGCAACACGATAGTCAAATTCGCAACACAAAAGTC
758 TGTAAATCGCAACCTACAAGAAGTCAAATTCGCAACACGATAGTCAAATTCACAACACAAAAGTC
* ** *
2149672 AAATTCGCAACGCGAATCTGT-AAA-TCGCAACGCGAATCTATAAATCGCAACACGAATTTGTAA
823 AAATTCGCAACAC-AA-AAGTCAAATTCGCAACGCGAATCTATAAATCGCAACACGAATCTGTAA
*
2149735 ATTGCAACACAGAAGTC-AAATTCGCAACACAGAAGTCAAATTCGAAACACGA-AAGTCAAATTC
886 ATCGCAA-ACAGAA-TCTAAA-TCGCAACACAGAAGTCAAATTCGAAACAC-ATAAGTCAAATTC
*
2149798 AAAACACAAAAGTTAAATT-C
947 AAAACACAAAAGTCAAATTGC
* * **
2149818 CTATCGCGAATCTGT-AAA-TCGCAACGCGAATTTGTAAATCACAACACAGAAGTCATATTCGCA
1 C-AACAC-AA-AAGTCAAATTCGCAACGCGAATTTGTAAATCACAACAC-GAAGTCATATTCGCA
* * *
2149881 ACACAAAAGTTAAATTCGCAACGCG-A-TAGTCAAATTCGCAACAC-TAAATTTCAAATTTGCAA
62 ACACAAAAGTTAAATTCGCAACGCGAATTTGT-AAA-TCGCAACACAT-AATGTCAAATTCGCAA
* * * * *
2149943 CGCGAT-AGTCAAATTCGCAACGCGATAGTCAAATTCGCAACGTGAAAGTCAAATTCGCAA
124 CAC-ATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTCGCAA
2150003 AGCACGTTTA
Statistics
Matches: 994, Mismatches: 93, Indels: 125
0.82 0.08 0.10
Matches are distributed among these distances:
964 2 0.00
965 8 0.01
966 292 0.29
967 22 0.02
968 10 0.01
971 2 0.00
972 2 0.00
973 1 0.00
977 1 0.00
980 2 0.00
981 1 0.00
984 6 0.01
985 19 0.02
986 554 0.56
987 67 0.07
988 5 0.01
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.27
Consensus pattern (967 bp):
CAACACAAAAGTCAAATTCGCAACGCGAATTTGTAAATCACAACACGAAGTCATATTCGCAACAC
AAAAGTTAAATTCGCAACGCGAATTTGTAAATCGCAACACATAATGTCAAATTCGCAACACATAA
GTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACTGAATTTCA
AATTCGCAACACAAAAGTCAAATTCGCAACGCAAAAGTCAAATTCGCAAAGCGCATTTATTTTCG
CAACGCGAATTTCATTTTATTTTCGAATTCGAAACACAATATTAATTTCGCAACACAAATGTAAA
CAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCAATCCCATCTCCATCTCTCAC
TCTCTACGACGACATCCGTCCCCATCTCCAACAAAATCCATCCCCATCTCCGACGAAATCCGTCT
ATCTCCATCTCTCAGAGCAACCCTCACAACCATTCACAGTCAAAAATGGAAAATCAACATCCGAT
GGTTAGTTTTTTTAATCTCTTATTTTTATTTTTGAAATTTTTGTATTATTATTAGATTTTTCTTA
TATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAAACTCAGTGACCGAAAATGCCTTA
TAATATACGATTTTAACCAACTTTTTTTGGATTTACGAAAATGACCAACAAATTCGAAACGCGAA
CTCCAATTTCACAACCCAGTTTCCAAATTCGCAACGCGAATATGTAAATCGCAACCTACAAGAAG
TCAAATTCGCAACACGATAGTCAAATTCACAACACAAAAGTCAAATTCGCAACACAAAAGTCAAA
TTCGCAACGCGAATCTATAAATCGCAACACGAATCTGTAAATCGCAAACAGAATCTAAATCGCAA
CACAGAAGTCAAATTCGAAACACATAAGTCAAATTCAAAACACAAAAGTCAAATTGC
Found at i:2150079 original size:906 final size:912
Alignment explanation
Indices: 2148693--2150582 Score: 2713
Period size: 906 Copynumber: 2.1 Consensus size: 912
2148683 GTCCAATTTA
* * * **
2148693 CAACACTGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGTAAA-TCGCAAC
1 CAACACAGAAGTCAAATTCGCAACAC-ATAGTCAAATTCGCAACAC-AA-AAGTAAATTCGCAAC
* * * *
2148757 GCGAATCTGTAAATCGCAATGTGAATCTGTAAATCGCAACACAGAAGTTAAATTCGCAACACATA
63 GCGAATCTGTAAATCGCAACGCGAATCTATAAATCGCAACACAGAAGTTAAATTCGCAACACAGA
* * * ** * * **
2148822 AGTCAAATTCGCAACGCGATAGTCAAATTGGCAACACAAAAGTCAAATTCGCAACGCGAATTTGT
128 AGTCAAATTCGCAACACGATAGTCAAATTCGAAACACAAAAGTCAAATTCAAAACACAAAAGTGT
* * * * *
2148887 AAATTGCAATGCGAATTTGTAAATTGCAACGCGAATTTGTAAATCGCAACACATAAGTCAAATTC
193 AAATTCCAATGCGAATCTGTAAATCGCAACGCGAATTTGTAAATCACAACACAGAAGTCAAATTC
*
2148952 GCAATACATAAGTCAAATTCGTAACGCAATAGTCAAATTCGCAACGCGATAGTCAAATTTGCAAC
258 GCAATAC--AAG-CAAA----TAACG--ATA-TCAAATTCGCAACGCGATAGTCAAATTCGCAAC
* * *
2149017 ACTGAATTTCAAATTCGTAACACAAAAGTCAAATTCGGAACGCGATAGTAAAATTCACAACGCAA
313 ACTAAATTTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGATAGTAAAATTCACAACGCAA
*
2149082 AAGTCAAATTCGCAAAGCGCATTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAA
378 AAGTCAAATTCGCAAAGCACATTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAA
*
2149147 CACAATATTAATTTCGCAACACAAATGTAAACAATATTATCGCAAATCATAACCTAAAACCCTAA
443 CACAATATTAATTTCGCAACACAAATGCAAACAATATTATCGCAAATCATAACCTAAAACCCTAA
*
2149212 ATCACAACTCAA-TCTCATCTCCATCTCTCACTCTCTACGGCGACATCCGTCCCCATCTCCAACA
508 ATCACAACTCAATTC-CATCTCCATCTCTCACTCTCTACGACGACATCCGTCCCCATCTCCAACA
* * *
2149276 AAATCTATCCCCATCTCC-GACGAAATCCGTCTTTCTCCATCTGTCAGAGCAATCCTCACAACCA
572 AAATCCATCCCCATCTCCAG-CGAAATCCGTCTTTCTCCATCTCTCAGAGCAACCCTCACAACCA
* * * *
2149340 TTCACAGTCAGAAATGGAAAATCAATCATCGAGAGTTAGTTTTTTTAATCTCTTTTTTTTTATTT
636 TTCACAGTCAGAAATGGAAAAGCAACCACCCAGAGTTAG-TTTTTTAATCTC-TTTTTTTTATTT
*
2149405 TGAAATTTTTGTCTTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATA
699 TGAAATTTTTGTATTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATA
* * *
2149470 GAGAAAATAAACTTAGTGACCGAAAATTCCTTATAATATACGATTTTAACCAACTTTTTTTGGAT
764 GAGAAAATAAACTCAGTGACCGAAAATACCTTATAATATACGAGTTTAACCAACTTTTTTTGGAT
*
2149535 TTACGAAAATGACCAACAAATTCGAAACGCGAACTCCAATTTCACAACTCAGTTTCCAAATTCGC
829 TTACGAAAATGACCAACAAATTCGAAACGCGAACTCCAATTTCACAACCCAGTTTCCAAATTCGC
*
2149600 AACGCGAATTTGTAAATCG
894 AACGCGAATCTGTAAATCG
2149619 CAACACAGAAGTCAAATTCGCAACACGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACG
1 CAACACAGAAGTCAAATTCGCAACAC-ATAGTCAAATTCGCAACACAAAAGT-AAATTCGCAACG
*
2149684 CGAATCTGTAAATCGCAACGCGAATCTATAAATCGCAACAC-GAATTTGTAAATT-GCAACACAG
64 CGAATCTGTAAATCGCAACGCGAATCTATAAATCGCAACACAGAA-GT-TAAATTCGCAACACAG
*
2149747 AAGTCAAATTCGCAACACAGA-AGTCAAATTCGAAACACGAAAGTCAAATTCAAAACACAAAAGT
127 AAGTCAAATTCGCAACAC-GATAGTCAAATTCGAAACACAAAAGTCAAATTCAAAACACAAAAGT
* *
2149811 -TAAATTCCTATCGCGAATCTGTAAATCGCAACGCGAATTTGTAAATCACAACACAGAAGTCATA
191 GTAAATTCCAAT-GCGAATCTGTAAATCGCAACGCGAATTTGTAAATCACAACACAGAAGTCAAA
2149875 TTCGC-A-AC-A-C-AA-AA-G-T-T-AAATTCGCAACGCGATAGTCAAATTCGCAACACTAAAT
255 TTCGCAATACAAGCAAATAACGATATCAAATTCGCAACGCGATAGTCAAATTCGCAACACTAAAT
* * * * * * **
2149930 TTCAAATTTGCAACGCGATAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACGTGAAAGTCAA
320 TTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGATAGTAAAATTCACAACGCAAAAGTCAA
*
2149995 ATTCGCAAAGCACGTTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAACACAATA
385 ATTCGCAAAGCACATTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAACACAATA
*
2150060 TTAATTTCGCAATACAAATGCAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAA
450 TTAATTTCGCAACACAAATGCAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAA
* * * * * * *
2150125 CTCAATTCCATCTCCATCTCTCACTCTTTACGACGATATCCTTCCTCATCTCCGATAAAATCCGT
515 CTCAATTCCATCTCCATCTCTCACTCTCTACGACGACATCCGTCCCCATCTCCAACAAAATCCAT
* *
2150190 CCCCATCTCCAGCGAAATCCTTCTTTCTCCATCTCTCAGAGCAACCCTCACAACCATTCACGGTC
580 CCCCATCTCCAGCGAAATCCGTCTTTCTCCATCTCTCAGAGCAACCCTCACAACCATTCACAGTC
*
2150255 AGAAATGGAAAAGCAACCACCCAGGGTTAGTTTTTTAATCTCTTTTTTTTATTTTGAAATTTTTG
645 AGAAATGGAAAAGCAACCACCCAGAGTTAGTTTTTTAATCTCTTTTTTTTATTTTGAAATTTTTG
*
2150320 TATTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAAC
710 TATTATTATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAAA
*
2150385 CTCAGTGACCGAAAATACCTTATAATATACGAGTTTAACCAACTTTTTTTGGATTTGCGAAAATG
775 CTCAGTGACCGAAAATACCTTATAATATACGAGTTTAACCAACTTTTTTTGGATTTACGAAAATG
* * *
2150450 ACCAATAAATTCGCAACGCGAACTCCAATTTCGCAACCCAGTTTCCAAATTCGCAACGCGAATCT
840 ACCAACAAATTCGAAACGCGAACTCCAATTTCACAACCCAGTTTCCAAATTCGCAACGCGAATCT
2150515 GTAAATCG
905 GTAAATCG
* * *
2150523 CAACGCA-AATTTGT-AAA-TCGCAACACATAAGTCAAATTCACAACACAGAAGTTAAATTCG
1 CAACACAGAA---GTCAAATTCGCAACACAT-AGTCAAATTCGCAACACAAAAG-TAAATTCG
2150583 TAGCACGATA
Statistics
Matches: 875, Mismatches: 76, Indels: 48
0.88 0.08 0.05
Matches are distributed among these distances:
903 4 0.00
904 257 0.29
905 16 0.02
906 356 0.41
907 4 0.00
909 1 0.00
912 1 0.00
913 2 0.00
918 2 0.00
919 1 0.00
921 1 0.00
924 4 0.00
925 18 0.02
926 200 0.23
927 8 0.01
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (912 bp):
CAACACAGAAGTCAAATTCGCAACACATAGTCAAATTCGCAACACAAAAGTAAATTCGCAACGCG
AATCTGTAAATCGCAACGCGAATCTATAAATCGCAACACAGAAGTTAAATTCGCAACACAGAAGT
CAAATTCGCAACACGATAGTCAAATTCGAAACACAAAAGTCAAATTCAAAACACAAAAGTGTAAA
TTCCAATGCGAATCTGTAAATCGCAACGCGAATTTGTAAATCACAACACAGAAGTCAAATTCGCA
ATACAAGCAAATAACGATATCAAATTCGCAACGCGATAGTCAAATTCGCAACACTAAATTTCAAA
TTCGCAACACAAAAGTCAAATTCGCAACGCGATAGTAAAATTCACAACGCAAAAGTCAAATTCGC
AAAGCACATTTATTTTCGCAACGCGAATTTTATTTTATTTTCGAATTCGAAACACAATATTAATT
TCGCAACACAAATGCAAACAATATTATCGCAAATCATAACCTAAAACCCTAAATCACAACTCAAT
TCCATCTCCATCTCTCACTCTCTACGACGACATCCGTCCCCATCTCCAACAAAATCCATCCCCAT
CTCCAGCGAAATCCGTCTTTCTCCATCTCTCAGAGCAACCCTCACAACCATTCACAGTCAGAAAT
GGAAAAGCAACCACCCAGAGTTAGTTTTTTAATCTCTTTTTTTTATTTTGAAATTTTTGTATTAT
TATTAGATTTTTCTTATATTGATGATAAATTTACTGGTAATTTCAATAGAGAAAATAAACTCAGT
GACCGAAAATACCTTATAATATACGAGTTTAACCAACTTTTTTTGGATTTACGAAAATGACCAAC
AAATTCGAAACGCGAACTCCAATTTCACAACCCAGTTTCCAAATTCGCAACGCGAATCTGTAAAT
CG
Found at i:2150523 original size:20 final size:20
Alignment explanation
Indices: 2150500--2150546 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
2150490 GTTTCCAAAT
*
2150500 TCGCAACGCGAATCTGTAAA
1 TCGCAACGCAAATCTGTAAA
*
2150520 TCGCAACGCAAATTTGTAAA
1 TCGCAACGCAAATCTGTAAA
2150540 TCGCAAC
1 TCGCAAC
2150547 ACATAAGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (20 bp):
TCGCAACGCAAATCTGTAAA
Found at i:2150568 original size:20 final size:20
Alignment explanation
Indices: 2150540--2150823 Score: 187
Period size: 20 Copynumber: 14.2 Consensus size: 20
2150530 AATTTGTAAA
2150540 TCGCAACACATAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
* * *
2150560 TCACAACACAGAAGTTAAAT
1 TCGCAACACATAAGTCAAAT
* *
2150580 TCGTAGCACGAT-AGTCAAAT
1 TCGCAACAC-ATAAGTCAAAT
2150600 TCGCAACAC-TGAAGTCAAAT
1 TCGCAACACAT-AAGTCAAAT
*
2150620 TCGCAACACAAAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
* *
2150640 TCGCAACGTAAATATGT-AAA-
1 TCGCAAC--ACATAAGTCAAAT
* *
2150660 TCGCAACGCA-AA-TCTATAAA
1 TCGCAACACATAAGTC-A-AAT
**
2150680 TCGCAATGCGA-ATTTGT-AAA-
1 TCGCAA--C-ACATAAGTCAAAT
*
2150700 TCGCAACACAAAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
*
2150720 TCGCAACACAGAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
* *
2150740 TCACAACGCGAT-AGTCAAAT
1 TCGCAACAC-ATAAGTCAAAT
*
2150760 TCGCAACAC-TGAATTTCAAAT
1 TCGCAACACAT-AA-GTCAAAT
*
2150781 TCGCAACACAAAAGTCAAAT
1 TCGCAACACATAAGTCAAAT
* *
2150801 TCTCAACGCGA-AAGTCAAAT
1 TCGCAACAC-ATAAGTCAAAT
2150821 TCG
1 TCG
2150824 AAAAGTGCGT
Statistics
Matches: 205, Mismatches: 35, Indels: 48
0.71 0.12 0.17
Matches are distributed among these distances:
16 1 0.00
17 2 0.01
18 8 0.04
19 5 0.02
20 155 0.76
21 25 0.12
22 8 0.04
24 1 0.00
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (20 bp):
TCGCAACACATAAGTCAAAT
Found at i:2150596 original size:40 final size:40
Alignment explanation
Indices: 2150540--2150823 Score: 224
Period size: 40 Copynumber: 7.1 Consensus size: 40
2150530 AATTTGTAAA
* * *
2150540 TCGCAACACATAAGTCAAATTCACAACACAGAAGTTAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACACAGAAGTCAAAT
* * * * *
2150580 TCGTAGCACGATAGTCAAATTCGCAACACTGAAGTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACACAGAAGTCAAAT
* * *
2150620 TCGCAACACAAAAGTCAAATTCGCAACGTAAATATGT-AAA-
1 TCGCAACACAAAAGTCAAATTCGCAAC--ACAGAAGTCAAAT
* * **
2150660 TCGCAACGC-AAA-TCTATAAATCGCAATGC-GAATTTGT-AAA-
1 TCGCAACACAAAAGTC-A-AATTCGCAACACAGAA---GTCAAAT
2150700 TCGCAACACAAAAGTCAAATTCGCAACACAGAAGTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACACAGAAGTCAAAT
* * * * * *
2150740 TCACAACGCGATAGTCAAATTCGCAACACTGAATTTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACACAGAA-GTCAAAT
* *
2150781 TCGCAACACAAAAGTCAAATTCTCAACGC-GAAAGTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACACAG-AAGTCAAAT
2150821 TCG
1 TCG
2150824 AAAAGTGCGT
Statistics
Matches: 190, Mismatches: 40, Indels: 28
0.74 0.16 0.11
Matches are distributed among these distances:
37 1 0.01
38 4 0.02
39 7 0.04
40 131 0.69
41 41 0.22
42 6 0.03
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (40 bp):
TCGCAACACAAAAGTCAAATTCGCAACACAGAAGTCAAAT
Found at i:2150720 original size:160 final size:161
Alignment explanation
Indices: 2150500--2150808 Score: 494
Period size: 160 Copynumber: 1.9 Consensus size: 161
2150490 GTTTCCAAAT
* * *
2150500 TCGCAACGCGAATCTGTAAATCGCAACGCAAATTTGTAAATCGCAACACATAAGTCAAATTCACA
1 TCGCAACGCAAATCTATAAATCGCAACGCAAATTTGTAAATCGCAACACAAAAGTCAAATTCACA
* ** *
2150565 ACACAGAAGTTAAATTCGTAGCACGATAGTCAAATTCGCAACACTGAA-GTCAAATTCGCAACAC
66 ACACAGAAGTCAAATTCACAACACGATAGTCAAATTCGCAACACTGAATGTCAAATTCGCAACAC
2150629 AAAAGTCAAATTCGCAACGTAAATATGTAAA
131 AAAAGTCAAATTCGCAACGTAAATATGTAAA
* * *
2150660 TCGCAACGCAAATCTATAAATCGCAATGCGAATTTGTAAATCGCAACACAAAAGTCAAATTCGCA
1 TCGCAACGCAAATCTATAAATCGCAACGCAAATTTGTAAATCGCAACACAAAAGTCAAATTCACA
* *
2150725 ACACAGAAGTCAAATTCACAACGCGATAGTCAAATTCGCAACACTGAATTTCAAATTCGCAACAC
66 ACACAGAAGTCAAATTCACAACACGATAGTCAAATTCGCAACACTGAATGTCAAATTCGCAACAC
*
2150790 AAAAGTCAAATTCTCAACG
131 AAAAGTCAAATTCGCAACG
2150809 CGAAAGTCAA
Statistics
Matches: 135, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
160 102 0.76
161 33 0.24
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (161 bp):
TCGCAACGCAAATCTATAAATCGCAACGCAAATTTGTAAATCGCAACACAAAAGTCAAATTCACA
ACACAGAAGTCAAATTCACAACACGATAGTCAAATTCGCAACACTGAATGTCAAATTCGCAACAC
AAAAGTCAAATTCGCAACGTAAATATGTAAA
Found at i:2151142 original size:64 final size:66
Alignment explanation
Indices: 2151061--2151204 Score: 247
Period size: 66 Copynumber: 2.2 Consensus size: 66
2151051 TTTTACATTG
*
2151061 AAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAATTATTTTTTT-CTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAATTTGATGAGGAAATAAAAATTATTTTTTTGCTTGTTTAATTGATTTGT
2151124 A
66 A
* *
2151125 AAAGTTGATTTGTTTAATTTGATGTGTAAATAAAAATTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAATTTGATGAGGAAATAAAAATTATTTTTTTGCTTGTTTAATTGATTTGT
2151190 A
66 A
2151191 AAAGTTGATTTGTT
1 AAAGTTGATTTGTT
2151205 GTTTTAAATT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
64 17 0.23
65 25 0.33
66 33 0.44
ACGTcount: A:0.31, C:0.01, G:0.17, T:0.51
Consensus pattern (66 bp):
AAAGTTGATTTGTTTAATTTGATGAGGAAATAAAAATTATTTTTTTGCTTGTTTAATTGATTTGT
A
Found at i:2151553 original size:18 final size:18
Alignment explanation
Indices: 2151530--2151565 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2151520 AAGCCGGTTG
*
2151530 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
2151548 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
2151566 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:2154643 original size:16 final size:15
Alignment explanation
Indices: 2154621--2154659 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2154611 GAAATCATTG
2154621 AAAAATTATATATAAA
1 AAAAATTATATA-AAA
* *
2154637 TAAAATTATGTAAAA
1 AAAAATTATATAAAA
2154652 AAAAATTA
1 AAAAATTA
2154660 GAGATGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AAAAATTATATAAAA
Found at i:2154655 original size:14 final size:15
Alignment explanation
Indices: 2154621--2154659 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
2154611 GAAATCATTG
2154621 AAAAATTATATATAA
1 AAAAATTATATATAA
* *
2154636 ATAAAATTATGTAAAA
1 A-AAAATTATATATAA
2154652 AAAAATTA
1 AAAAATTA
2154660 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AAAAATTATATATAA
Found at i:2154839 original size:19 final size:20
Alignment explanation
Indices: 2154815--2154961 Score: 97
Period size: 20 Copynumber: 7.4 Consensus size: 20
2154805 AACTAAAACA
2154815 TGTTGCGAAATT-AAATTCG
1 TGTTGCGAAATTGAAATTCG
*
2154834 TGTTGCG-AATTCGAAAATCG
1 TGTTGCGAAATT-GAAATTCG
* *
2154854 AGTTGCGAATTTGAAATTC-
1 TGTTGCGAAATTGAAATTCG
* *
2154873 AGTTGCGAATTTGAAATTCAG
1 TGTTGCGAAATTGAAATTC-G
* *
2154894 TGTTGCGAATTTG-ACTATCG
1 TGTTGCGAAATTGAAAT-TCG
* * *
2154914 CGTTGCGAATTTG-ACTTCTG
1 TGTTGCGAAATTGAAATTC-G
* ** *
2154934 TGTTGCGAATTTGACTTTTG
1 TGTTGCGAAATTGAAATTCG
2154954 TGTTGCGA
1 TGTTGCGA
2154962 TTTACAAATT
Statistics
Matches: 109, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.04
19 28 0.26
20 58 0.53
21 19 0.17
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (20 bp):
TGTTGCGAAATTGAAATTCG
Found at i:2154860 original size:20 final size:20
Alignment explanation
Indices: 2154816--2154927 Score: 111
Period size: 20 Copynumber: 5.7 Consensus size: 20
2154806 ACTAAAACAT
* * *
2154816 GTTGCGAAATT-AAATTCGT
1 GTTGCGAATTTGAAAATCGA
*
2154835 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGAAAATCGA
*
2154855 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAAATCGA
* *
2154874 GTTGCGAATTTGAAATTCAGT
1 GTTGCGAATTTGAAAATC-GA
** *
2154895 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGAAAATCGA
2154915 GTTGCGAATTTGA
1 GTTGCGAATTTGA
2154928 CTTCTGTGTT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
19 28 0.35
20 36 0.46
21 15 0.19
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCGA
Found at i:2154878 original size:39 final size:41
Alignment explanation
Indices: 2154816--2154924 Score: 118
Period size: 39 Copynumber: 2.7 Consensus size: 41
2154806 ACTAAAACAT
* *
2154816 GTTGCGAAATT-AAATTCGTGTTGCGAATTCGAAAATC-GA
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCAGA
* * *
2154855 GTTGCGAATTTGAAATTC-AGTTGCGAATTTGAAATTCAGT
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCAGA
* *
2154895 GTTGCGAATTTG-ACTATCGCGTTGCGAATT
1 GTTGCGAATTTGAAAT-TCGAGTTGCGAATT
2154925 TGACTTCTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 28 0.47
40 21 0.36
41 10 0.17
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (41 bp):
GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCAGA
Found at i:2154899 original size:40 final size:40
Alignment explanation
Indices: 2154815--2155186 Score: 146
Period size: 40 Copynumber: 9.3 Consensus size: 40
2154805 AACTAAAACA
* * * *
2154815 TGTTGCGAAATT-AAATTCGTGTTGCGAATTCGAAAATCG
1 TGTTGCGAATTTGAAATTCGAGTTGCGAATTTGAAATTCG
*
2154854 AGTTGCGAATTTGAAATTC-AGTTGCGAATTTGAAATTCAG
1 TGTTGCGAATTTGAAATTCGAGTTGCGAATTTGAAATTC-G
* * *
2154894 TGTTGCGAATTTG-ACTATCGCGTTGCGAATTTG-ACTTCTG
1 TGTTGCGAATTTGAAAT-TCGAGTTGCGAATTTGAAATTC-G
** * * * *
2154934 TGTTGCGAATTTGACTTTTGTGTTGCG-ATTTACAAATTCA
1 TGTTGCGAATTTGAAATTCGAGTTGCGAATTT-GAAATTCG
* * * *
2154974 CGTTGCG-ATTT-ACATATTTGCGTTGTG-ATTT-ACATATTCG
1 TGTTGCGAATTTGA-A-ATTCGAGTTGCGAATTTGA-A-ATTCG
* * * * *
2155014 CGTTGCGAATTTG-ATTTCAGTGTTACGAATTTG-ACTATCG
1 TGTTGCGAATTTGAAATTC-GAGTTGCGAATTTGAAAT-TCG
* * *
2155054 CGTTGCGAATTTG-ACTATCGCA-TTGCGAATTTG-ACTTCTG
1 TGTTGCGAATTTGAAAT-TCG-AGTTGCGAATTTGAAATTC-G
* ** * * *
2155094 TGTTGTGAATTTGACTTTTGTGTTGCG-ATTTACAAATTCG
1 TGTTGCGAATTTGAAATTCGAGTTGCGAATTT-GAAATTCG
* * * * * *
2155134 CGTTGCGAATTTGGAAACT-GGGTTGCGAAATTGGAGTTCG
1 TGTTGCGAATTT-GAAATTCGAGTTGCGAATTTGAAATTCG
*
2155174 CGTTGCGAATTTG
1 TGTTGCGAATTTG
2155187 TTGATCATTT
Statistics
Matches: 257, Mismatches: 50, Indels: 52
0.72 0.14 0.14
Matches are distributed among these distances:
38 2 0.01
39 47 0.18
40 170 0.66
41 38 0.15
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (40 bp):
TGTTGCGAATTTGAAATTCGAGTTGCGAATTTGAAATTCG
Found at i:2154900 original size:60 final size:58
Alignment explanation
Indices: 2154816--2154927 Score: 161
Period size: 60 Copynumber: 1.9 Consensus size: 58
2154806 ACTAAAACAT
2154816 GTTGCGAAATTAAATTCGTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGAAATTCA
1 GTTGCGAAATTAAATTCGTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGAAATTCA
* * ** *
2154874 GTTGCGAATTTGAAATTCAGTGTTGCGAATTTGACTATCGCGTTGCGAATTTGA
1 GTTGCGAAATT-AAATTC-GTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGA
2154928 CTTCTGTGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
58 10 0.21
59 6 0.13
60 31 0.66
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (58 bp):
GTTGCGAAATTAAATTCGTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGAAATTCA
Found at i:2154928 original size:20 final size:20
Alignment explanation
Indices: 2154895--2155146 Score: 166
Period size: 20 Copynumber: 12.6 Consensus size: 20
2154885 GAAATTCAGT
2154895 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
*
2154915 GTTGCGAATTTGACT-TCTGT
1 GTTGCGAATTTGACTATC-GC
* * *
2154935 GTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTATCGC
* *
2154955 GTTGCG-ATTT-ACAAATTCAC
1 GTTGCGAATTTGAC-TA-TCGC
*
2154975 GTTGCG-ATTT-ACATATTTGC
1 GTTGCGAATTTGAC-TA-TCGC
*
2154995 GTTGTG-ATTT-ACATATTCGC
1 GTTGCGAATTTGAC-TA-TCGC
* *
2155015 GTTGCGAATTTGA-TTTCAGT
1 GTTGCGAATTTGACTATC-GC
*
2155035 GTTACGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
2155055 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
* *
2155075 ATTGCGAATTTGACT-TCTGT
1 GTTGCGAATTTGACTATC-GC
* * * *
2155095 GTTGTGAATTTGACTTTTGT
1 GTTGCGAATTTGACTATCGC
*
2155115 GTTGCG-ATTT-ACAAATTCGC
1 GTTGCGAATTTGAC-TA-TCGC
2155135 GTTGCGAATTTG
1 GTTGCGAATTTG
2155147 GAAACTGGGT
Statistics
Matches: 189, Mismatches: 29, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
18 4 0.02
19 14 0.07
20 157 0.83
21 13 0.07
22 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.42
Consensus pattern (20 bp):
GTTGCGAATTTGACTATCGC
Found at i:2154957 original size:60 final size:60
Alignment explanation
Indices: 2154830--2155146 Score: 183
Period size: 60 Copynumber: 5.3 Consensus size: 60
2154820 CGAAATTAAA
* ** * * * **
2154830 TTCGTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGAAATTC--AGTTGCGAATTTGAAA
1 TTCGTGTTGCGAATTTGACTATCGCGTTGCGAATTTG-ACTTCTGCGTTGCGAATTTGACT
*
2154889 TTCAGTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACT
1 TTC-GTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCGTTGCGAATTTGACT
* * * * *
2154950 TTTGTGTTGCG-ATTT-ACAAATTCACGTTGCG-ATTT-ACATATTTGCGTTGTG-ATTT-ACAT
1 TTCGTGTTGCGAATTTGAC-TA-TCGCGTTGCGAATTTGAC-T-TCTGCGTTGCGAATTTGAC-T
* * * *
2155009 ATTCGCGTTGCGAATTTGA-TTTCAGTGTTACGAATTTGACTATC-GCGTTGCGAATTTGACT
1 -TTCGTGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACT-TCTGCGTTGCGAATTTGACT
* ** * * * * *
2155070 ATCGCATTGCGAATTTGACT-TCTGTGTTGTGAATTTGACTTTTGTGTTGCG-ATTT-ACAAA
1 TTCGTGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACTTCTGCGTTGCGAATTTGAC--T
*
2155130 TTCGCGTTGCGAATTTG
1 TTCGTGTTGCGAATTTG
2155147 GAAACTGGGT
Statistics
Matches: 205, Mismatches: 33, Indels: 39
0.74 0.12 0.14
Matches are distributed among these distances:
58 8 0.04
59 29 0.14
60 131 0.64
61 32 0.16
62 5 0.02
ACGTcount: A:0.22, C:0.15, G:0.23, T:0.41
Consensus pattern (60 bp):
TTCGTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCGTTGCGAATTTGACT
Found at i:2155119 original size:140 final size:140
Alignment explanation
Indices: 2154874--2155138 Score: 365
Period size: 140 Copynumber: 1.9 Consensus size: 140
2154864 TTGAAATTCA
* **
2154874 GTTGCGAATTTGAAATTCAGTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTG
1 GTTGCGAATTTGAAATTCAGTGTTACGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCATTG
* * *
2154939 CGAATTTGACTTTTGTGTTGCGATTTACAAATTCACGTTGCGATTTACATATTTGCGTTGTGATT
66 CGAATTTGACTTCTGTGTTGCGATTTAC-AATTCACGTTGCGATTTACAAATTCGCGTTGTGATT
2155004 TACATATTCGC
130 TACATATTCGC
*
2155015 GTTGCGAATTTG-ATTTCAGTGTTACGAATTTGACTATCGCGTTGCGAATTTGACTATC-GCATT
1 GTTGCGAATTTGAAATTCAGTGTTACGAATTTGACTATCGCGTTGCGAATTTGACT-TCTGCATT
* * ***
2155078 GCGAATTTGACTTCTGTGTTGTGAATTTGAC-TTTTGTGTTGCGATTTACAAATTCGCGTTG
65 GCGAATTTGACTTCTGTGTTGCG-ATTT-ACAATTCACGTTGCGATTTACAAATTCGCGTTG
2155139 CGAATTTGGA
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
140 89 0.82
141 18 0.17
142 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (140 bp):
GTTGCGAATTTGAAATTCAGTGTTACGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCATTG
CGAATTTGACTTCTGTGTTGCGATTTACAATTCACGTTGCGATTTACAAATTCGCGTTGTGATTT
ACATATTCGC
Found at i:2155176 original size:160 final size:160
Alignment explanation
Indices: 2154895--2155186 Score: 435
Period size: 160 Copynumber: 1.8 Consensus size: 160
2154885 GAAATTCAGT
*
2154895 GTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTTTGTGTTGC
1 GTTGCGAATTTGACTATCGCATTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTTTGTGTTGC
** * *
2154960 GATTTACAAATTCACGTTGCGATTTACATATTTGCGTTGTGATTTACATATTCGCGTTGCGAATT
66 GATTTACAAATTCACGTTGCGATTTACATAACTGCGTTGCGAATTACATATTCGCGTTGCGAATT
2155025 TGATTTCAGTGTTACGAATTTGACTATCGC
131 TGATTTCAGTGTTACGAATTTGACTATCGC
*
2155055 GTTGCGAATTTGACTATCGCATTGCGAATTTGACTTCTGTGTTGTGAATTTGACTTTTGTGTTGC
1 GTTGCGAATTTGACTATCGCATTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTTTGTGTTGC
* ** * ** *
2155120 GATTTACAAATTCGCGTTGCGAATTTGGA-AACTGGGTTGCGAAATTGGA-GTTCGCGTTGCGAA
66 GATTTACAAATTCACGTTGCG-ATTTACATAACTGCGTTGCG-AATTACATATTCGCGTTGCGAA
2155183 TTTG
129 TTTG
2155187 TTGATCATTT
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
160 108 0.92
161 9 0.08
ACGTcount: A:0.21, C:0.15, G:0.24, T:0.40
Consensus pattern (160 bp):
GTTGCGAATTTGACTATCGCATTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTTTGTGTTGC
GATTTACAAATTCACGTTGCGATTTACATAACTGCGTTGCGAATTACATATTCGCGTTGCGAATT
TGATTTCAGTGTTACGAATTTGACTATCGC
Found at i:2156891 original size:16 final size:16
Alignment explanation
Indices: 2156870--2156900 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2156860 AGCAACATAA
2156870 AAAAGAACAAGAAACG
1 AAAAGAACAAGAAACG
2156886 AAAAGAACAAGAAAC
1 AAAAGAACAAGAAAC
2156901 CGAACCAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.13, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAACAAGAAACG
Found at i:2156927 original size:18 final size:19
Alignment explanation
Indices: 2156906--2156942 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
2156896 GAAACCGAAC
*
2156906 CAAAGAAAGAAA-TAAAAA
1 CAAAAAAAGAAACTAAAAA
2156924 CAAAAAAAGAAACTAAAAA
1 CAAAAAAAGAAACTAAAAA
2156943 TAGAAAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.78, C:0.08, G:0.08, T:0.05
Consensus pattern (19 bp):
CAAAAAAAGAAACTAAAAA
Found at i:2163354 original size:67 final size:67
Alignment explanation
Indices: 2163256--2163427 Score: 240
Period size: 67 Copynumber: 2.6 Consensus size: 67
2163246 GTTTATCTTG
*
2163256 AAACAAA-TTTTATCTCGCTTGAGAC-TGTTTCTCTTGAAACATAAACCTTTGAGATTATTTCGC
1 AAACAAAGTTTTGTCTCGCTTGAGACAT-TTTCTCTTGAAACATAAACCTTTGAGATTATTTCGC
*
2163319 TCG
65 TCA
* * * *
2163322 AAGCATAGTTTTGTCTCGCTTGAGACATTTTCTCTTGAAACATAAACCTTTGAGATTGTTTCTCT
1 AAACAAAGTTTTGTCTCGCTTGAGACATTTTCTCTTGAAACATAAACCTTTGAGATTATTTCGCT
2163387 CA
66 CA
* * *
2163389 AAACAAAGTTTAGTCTCGCTTGAGACAATTTCCCTTGAA
1 AAACAAAGTTTTGTCTCGCTTGAGACATTTTCTCTTGAA
2163428 GCCCAAATTT
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
66 5 0.05
67 87 0.94
68 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (67 bp):
AAACAAAGTTTTGTCTCGCTTGAGACATTTTCTCTTGAAACATAAACCTTTGAGATTATTTCGCT
CA
Found at i:2163496 original size:102 final size:103
Alignment explanation
Indices: 2163371--2163586 Score: 267
Period size: 102 Copynumber: 2.1 Consensus size: 103
2163361 ACATAAACCT
* * * *
2163371 TTGAGATTG-TTTCTCTCAAAACAAAGTTTAGTCTCGCTTGAGACA-ATTTCCCTTGAAGCCCAA
1 TTGAGATTGTTTTCTCTAAAAACAAA-TTTAGTCTCGCTTGAGACAGATTTCCCTCGAAACACAA
* * * * * *
2163434 ATTTTGAAGTTTTTTTACTTGAAACAAAATTGATCTCAC
65 ATTTTGAAATTGTTTCACTTAAAACAAAATTCATCTCAA
* * *
2163473 TTGAGATTGTTTTC-CTAAAAACAAATTTTGTCTCGCTTGAGGCAGTTTTCCCTCGAAACACAAA
1 TTGAGATTGTTTTCTCTAAAAACAAATTTAGTCTCGCTTGAGACAGATTTCCCTCGAAACACAAA
*
2163537 TTTTGAAATTGTTTCACTTAAAACAAATTTCATCTCAA
66 TTTTGAAATTGTTTCACTTAAAACAAAATTCATCTCAA
*
2163575 TTGAGATAGTTT
1 TTGAGATTGTTT
2163587 CCCCTTGAAA
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
101 17 0.18
102 76 0.78
103 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (103 bp):
TTGAGATTGTTTTCTCTAAAAACAAATTTAGTCTCGCTTGAGACAGATTTCCCTCGAAACACAAA
TTTTGAAATTGTTTCACTTAAAACAAAATTCATCTCAA
Found at i:2163550 original size:168 final size:168
Alignment explanation
Indices: 2163330--2163647 Score: 392
Period size: 168 Copynumber: 1.9 Consensus size: 168
2163320 CGAAGCATAG
* * * * *
2163330 TTTTGTCTCGCTTGAGACATTTTCTCTTGAAACATAAACCTTTGAGATTGTTTCTCTCAAAACAA
1 TTTTGTCTCGCTTGAGACATTTTCCCTCGAAACACAAACCTTTGAAATTGTTTCACTCAAAACAA
** * * * * * *
2163395 AGTTT-AGTCTCGCTTGAGACAATTT-CCCTTGAAGCCCAAATTTTGAAGTTTTTTTACTTGAAA
66 A-TTTCA-TCTCAATTGAGACAATTTCCCCTTGAAACACAAA-TTTGAAATTGTTTCACTCGAAA
*
2163458 CAAAA-TTGATCTCACTTGAGATTGTTTTCCTAAAAACAAA
128 CAAAATTTGATCTCACCTGAGATTGTTTTCCTAAAAACAAA
* * *
2163498 TTTTGTCTCGCTTGAGGCAGTTTTCCCTCGAAACACAAA-TTTTGAAATTGTTTCACTTAAAACA
1 TTTTGTCTCGCTTGAGACA-TTTTCCCTCGAAACACAAACCTTTGAAATTGTTTCACTCAAAACA
* *
2163562 AATTTCATCTCAATTGAGATAGTTTCCCCTTGAAACACAAATTTGAAATTGTTTCACTCGAAACA
65 AATTTCATCTCAATTGAGACAATTTCCCCTTGAAACACAAATTTGAAATTGTTTCACTCGAAACA
*
2163627 AAATTTTATCTCACCTGAGAT
130 AAATTTGATCTCACCTGAGAT
2163648 AGATTCTCTT
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
167 40 0.32
168 70 0.56
169 16 0.13
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (168 bp):
TTTTGTCTCGCTTGAGACATTTTCCCTCGAAACACAAACCTTTGAAATTGTTTCACTCAAAACAA
ATTTCATCTCAATTGAGACAATTTCCCCTTGAAACACAAATTTGAAATTGTTTCACTCGAAACAA
AATTTGATCTCACCTGAGATTGTTTTCCTAAAAACAAA
Found at i:2163560 original size:66 final size:65
Alignment explanation
Indices: 2163473--2163639 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 65
2163463 TTGATCTCAC
* * ** * *
2163473 TTGAGATTGTTTTC-CTAAAAACAAATTTTGTCTCGCTTGAGGCAGTTTTCCCTCGAAACACAAA
1 TTGAAATTG-TTTCACTAAAAACAAATTTTATCTCAATTGAGACAGTTTCCCCTCGAAACACAAA
2163537 TT
65 -T
* * * *
2163539 TTGAAATTGTTTCACTTAAAACAAATTTCATCTCAATTGAGATAGTTTCCCCTTGAAACACAAAT
1 TTGAAATTGTTTCACTAAAAACAAATTTTATCTCAATTGAGACAGTTTCCCCTCGAAACACAAAT
**
2163604 TTGAAATTGTTTCACTCGAAACAAAATTTTATCTCA
1 TTGAAATTGTTTCACTAAAAAC-AAATTTTATCTCA
2163640 CCTGAGATAG
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 25 0.29
66 61 0.71
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.37
Consensus pattern (65 bp):
TTGAAATTGTTTCACTAAAAACAAATTTTATCTCAATTGAGACAGTTTCCCCTCGAAACACAAAT
Found at i:2163626 original size:65 final size:66
Alignment explanation
Indices: 2163519--2163663 Score: 195
Period size: 66 Copynumber: 2.2 Consensus size: 66
2163509 TTGAGGCAGT
* * *
2163519 TTTCCCTCGAAACACAAATTTTGAAATTGTTTCACTTAAAAC-AAATTTCATCTCAATTGAGATA
1 TTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTCAAAACAAAATTTCATCTCAACTGAGATA
2163583 G
66 G
* * *
2163584 TTTCCCCTTGAAACACAAA-TTTGAAATTGTTTCACTCGAAACAAAATTTTATCTCACCTGAGAT
1 TTT-CCCTTGAAACACAAATTTTGAAATTGTTTCACTCAAAACAAAATTTCATCTCAACTGAGAT
2163648 AG
65 AG
* *
2163650 ATTCTCTTGAAACA
1 TTTCCCTTGAAACA
2163664 AATTTATTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
65 34 0.49
66 36 0.51
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (66 bp):
TTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTCAAAACAAAATTTCATCTCAACTGAGATA
G
Found at i:2167446 original size:2 final size:2
Alignment explanation
Indices: 2167439--2167490 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
2167429 CTTCACATCT
2167439 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2167481 TA TA TA TA TA
1 TA TA TA TA TA
2167491 GTTTAATTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2169765 original size:120 final size:120
Alignment explanation
Indices: 2169630--2169877 Score: 462
Period size: 120 Copynumber: 2.1 Consensus size: 120
2169620 GATATCATAT
*
2169630 ATATATATATGTGTGTGTGTGTGTGTGTGGTGAACACAATTCTTCCAAAAACATATCATCTAACA
1 ATATATATATATGTGTGTGTGTGTGTGTGGTGAACACAATTCTTCCAAAAACATATCATCTAACA
2169695 TAACCGATCCAACTAAAGGCTAATGTCAAGCCCTAATCATATAATCAAACATAAG
66 TAACCGATCCAACTAAAGGCTAATGTCAAGCCCTAATCATATAATCAAACATAAG
2169750 ATATATATATATGTGTGTGTGTGTGTGTGGTGAACACAATTCTTCCAAAAACATATCATCTAACA
1 ATATATATATATGTGTGTGTGTGTGTGTGGTGAACACAATTCTTCCAAAAACATATCATCTAACA
*
2169815 TAACCGATCCAACTAAAGTCTAATGTCAAGCCCTAATCATATAATCAAACATAAG
66 TAACCGATCCAACTAAAGGCTAATGTCAAGCCCTAATCATATAATCAAACATAAG
*
2169870 -TACATATA
1 ATATATATA
2169878 GAAATGCACT
Statistics
Matches: 125, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
119 7 0.06
120 118 0.94
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (120 bp):
ATATATATATATGTGTGTGTGTGTGTGTGGTGAACACAATTCTTCCAAAAACATATCATCTAACA
TAACCGATCCAACTAAAGGCTAATGTCAAGCCCTAATCATATAATCAAACATAAG
Found at i:2171160 original size:45 final size:45
Alignment explanation
Indices: 2171064--2171222 Score: 180
Period size: 45 Copynumber: 3.6 Consensus size: 45
2171054 TATTGCTTCC
* * ** * *
2171064 TGATTGTCCAACGACGCATCC---ATTGTTTCTTGGTTGACCCCC
1 TGATTGTCCAACGCCACATCCAGTATTGTTTCCCGGTTGACCACA
** *
2171106 TGACCGTCCAACGCCACATCCAGTATTGTTTCCCGGTTGGCCACA
1 TGATTGTCCAACGCCACATCCAGTATTGTTTCCCGGTTGACCACA
* * *
2171151 TGATTGTCCAACGCCACATCCGGTATTGTTTTCTGGTTGACCACA
1 TGATTGTCCAACGCCACATCCAGTATTGTTTCCCGGTTGACCACA
*
2171196 TGATTGTCCAACGCCACATCCCGTATT
1 TGATTGTCCAACGCCACATCCAGTATT
2171223 TCTTGGTTGA
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
42 17 0.17
45 81 0.83
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.30
Consensus pattern (45 bp):
TGATTGTCCAACGCCACATCCAGTATTGTTTCCCGGTTGACCACA
Found at i:2175547 original size:30 final size:30
Alignment explanation
Indices: 2175511--2175612 Score: 154
Period size: 30 Copynumber: 3.4 Consensus size: 30
2175501 CAGCTTGTGA
*
2175511 TGATGATGGTGGTTGT-ACTGTTGCAGCTTG
1 TGATGATGGTGTTTGTGA-TGTTGCAGCTTG
2175541 TGATGATGGTGTTTGTGATGTTGCAGCTTG
1 TGATGATGGTGTTTGTGATGTTGCAGCTTG
*
2175571 TAATGATGGTGTTTGTGATGTTGCAGCCTT-
1 TGATGATGGTGTTTGTGATGTTGCAG-CTTG
2175601 TGATGATGGTGT
1 TGATGATGGTGT
2175613 AATCCTTGTT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
30 63 0.94
31 4 0.06
ACGTcount: A:0.15, C:0.08, G:0.35, T:0.42
Consensus pattern (30 bp):
TGATGATGGTGTTTGTGATGTTGCAGCTTG
Found at i:2175556 original size:15 final size:15
Alignment explanation
Indices: 2175538--2175590 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
2175528 CTGTTGCAGC
2175538 TTGTGATGATGGTGT
1 TTGTGATGATGGTGT
* ** *
2175553 TTGTGATGTTGCAGC
1 TTGTGATGATGGTGT
*
2175568 TTGTAATGATGGTGT
1 TTGTGATGATGGTGT
2175583 TTGTGATG
1 TTGTGATG
2175591 TTGCAGCCTT
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.15, C:0.04, G:0.36, T:0.45
Consensus pattern (15 bp):
TTGTGATGATGGTGT
Found at i:2179185 original size:24 final size:23
Alignment explanation
Indices: 2179125--2179187 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
2179115 TTAGAGATAG
*
2179125 AGTGTTTTCATAAAAAAACCTTAAA
1 AGTGTTTT-A-AAAAAAACCCTAAA
* *
2179150 AGTATTTTAAAAAAATCCCTAAA
1 AGTGTTTTAAAAAAAACCCTAAA
*
2179173 AGTGTTTTGAAAAAA
1 AGTGTTTTAAAAAAA
2179188 TCTTTAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 25 0.76
24 1 0.03
25 7 0.21
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (23 bp):
AGTGTTTTAAAAAAAACCCTAAA
Found at i:2179195 original size:23 final size:23
Alignment explanation
Indices: 2179135--2179196 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
2179125 AGTGTTTTCA
2179135 TAAAAAAA-CCTTAAAAGTATTT
1 TAAAAAAATCCTTAAAAGTATTT
* *
2179157 TAAAAAAATCCCTAAAAGTGTTT
1 TAAAAAAATCCTTAAAAGTATTT
* *
2179180 TGAAAAAATCTTTAAAA
1 TAAAAAAATCCTTAAAA
2179197 ACTGTGGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (23 bp):
TAAAAAAATCCTTAAAAGTATTT
Found at i:2180732 original size:19 final size:20
Alignment explanation
Indices: 2180695--2180732 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
2180685 GACATTATGA
2180695 TTTTTTTATAAATATATTCT
1 TTTTTTTATAAATATATTCT
2180715 TTTTATTTA-AAATA-ATTC
1 TTTT-TTTATAAATATATTC
2180733 AAAATTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTTTATAAATATATTCT
Found at i:2181181 original size:11 final size:11
Alignment explanation
Indices: 2181165--2181189 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2181155 TGCTGTGTGG
2181165 CGGTTAAAAAA
1 CGGTTAAAAAA
2181176 CGGTTAAAAAA
1 CGGTTAAAAAA
2181187 CGG
1 CGG
2181190 CGTGACTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.16
Consensus pattern (11 bp):
CGGTTAAAAAA
Found at i:2182113 original size:201 final size:201
Alignment explanation
Indices: 2181414--2182120 Score: 786
Period size: 200 Copynumber: 3.5 Consensus size: 201
2181404 TTTTTGAAGT
* *
2181414 AAACCGGTATATTTATACCGGTAACATTGCAAATTTACCTATTACA-T-T-ATTATCGGTTTCGA
1 AAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
* * *
2181476 TGTTTTTT-AGATCGATACAATTTT--AAATGTATCGACACTTTATGCTTGCACCTCATTGGGCA
66 TGTTTTTTGGGATCGATAC-ATTTTAAAAATGTATCGACACTTTATGCGTGCACCTCTTTGGGCA
* *
2181538 TTCATATTTCATTCTGGAAAAAAGTATCGACACAAA--CAAACAAAGTGTCGATACATGAT-TTA
130 TTC--A--TC--TCTGGACAAAAGTATCGACACAAATTC-AAC-AAGTGTCGATACATTATGTT-
*
2181600 GACCTATTCTCTCATA
186 GACCTATTTTCTCATA
* * * *
2181616 AAACCGGTATATTTATACCGATTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGA
1 AAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
** * * * *
2181681 TG-TTTCCGGGATCGATACTTTTTATAAATATATCGACACTTTATG-GTTGCACC-CTTTTTGGC
66 TGTTTTTTGGGATCGATACATTTTAAAAATGTATCGACACTTTATGCG-TGCACCTC-TTTGGGC
* * * *
2181743 ATTC-TTTCTGGACCAAAAGTATCGACACAAATTTAACAAGTGTCGATACTTTATGCTGACCTAT
129 ATTCATCTCTGGA-CAAAAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTTGACCTAT
*
2181807 TTTATCATA
193 TTTCTCATA
* ** *
2181816 AAACCGGTATATTTACATTGGTTACATTGTAAATTTACCTAATACATTATAATTATCGGTTTCGA
1 AAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
* *
2181881 T-ATTTTTGGGATCGATAC-TTTTAATAAATGTATCAACACTTTATGCGTGCACCTCGTTTGGGC
66 TGTTTTTTGGGATCGATACATTTTAA-AAATGTATCGACACTTTATGCGTGCACCTC-TTTGGGC
* *
2181944 ATTCATCT-TGGACAATAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTTGACCTGT
129 ATTCATCTCTGGACAA-AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTTGACCTAT
*
2182008 TTTCTAAT-
193 TTTCTCATA
* * * * *
2182016 TAATCGGTATATTTATACCGGTTACATTGTTAATTTACCTATTACATTATAATTATTGGTTTTGA
1 AAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
2182081 TGTTTTTTTGGG-TCGATAC-TTTTAGAAAATGTATCGACAC
66 TG-TTTTTTGGGATCGATACATTTTA-AAAATGTATCGACAC
2182121 ATATTTAGGT
Statistics
Matches: 429, Mismatches: 55, Indels: 43
0.81 0.10 0.08
Matches are distributed among these distances:
199 11 0.03
200 202 0.47
201 95 0.22
202 54 0.13
203 1 0.00
204 8 0.02
205 24 0.06
206 34 0.08
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (201 bp):
AAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
TGTTTTTTGGGATCGATACATTTTAAAAATGTATCGACACTTTATGCGTGCACCTCTTTGGGCAT
TCATCTCTGGACAAAAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTTGACCTATTTT
CTCATA
Found at i:2185300 original size:200 final size:198
Alignment explanation
Indices: 2184945--2185727 Score: 1086
Period size: 200 Copynumber: 3.9 Consensus size: 198
2184935 CACGTTATTT
* * * * * *
2184945 AAAAGTATCGACACAAAATAAAAAAGTGTCGCTACATGTTGTAGACCTATTCTCTTATAAAACCG
1 AAAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAATCG
*
2185010 GTATATTTATATCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
66 GTATATTTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
* * *
2185075 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
131 CGGGATCGACAC-TTTTAAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCT
2185140 GGAC
195 GGAC
*
2185144 ATAAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATC
1 A-AAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAATC
* ** * *
2185209 GATATATTTATACCGGCTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATATTT
65 GGTATATTTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * * * *
2185274 TCGGGATCGACACGTTTAATAAATGTATCGACACTTTGTGTGTTCATCCTTTTTGGCATCCATCC
130 TCGGGATCGACACTTTTAA-AAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTC
*
2185339 TGAAC
194 TGGAC
* * *
2185344 AAAAAGTATCGACACAA-ATTTATATAGTGTCGATACATGTTATAGATCTATTCTCTCATAAAA-
1 -AAAAGTATCGACACAATA-TTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAAT
* ** * *
2185407 CTGGTATATTTATACTAGA-TATATTGTAAATTTACCTATTACATTATAATTATGGGTTCCGATG
64 C-GGTATATTTATAC-CGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATG
* * *
2185471 TTTTCGGGATCGACATTTTTTGAAAATGTATCGACACTTTATGAGTTCACCCTTTTTGGCATCCA
127 TTTTCGGGATCGACA-CTTTTAAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCA
2185536 TTCTGGAC
191 TTCTGGAC
* * *
2185544 AAATATTATCGACACAATATTAATAAGTGTCGATACATATTATAGACCTATTCTCTCATAAAATC
1 AAA-AGTATCGACACAATATTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAATC
*
2185609 GGTATATGTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
65 GGTATATTTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * *
2185674 TTGGGATCGACACTTTTAATAAATGTATCGAAACTTTATGCGTGTAACCCTTTT
130 TCGGGATCGACACTTTTAA-AAATGTATCGACACTTTATGCGT-TCACCCTTTT
2185728 GGATCGACAC
Statistics
Matches: 515, Mismatches: 56, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
199 17 0.03
200 481 0.93
201 17 0.03
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (198 bp):
AAAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAATCG
GTATATTTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
CGGGATCGACACTTTTAAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTG
GAC
Found at i:2185685 original size:400 final size:400
Alignment explanation
Indices: 2184945--2185710 Score: 1221
Period size: 400 Copynumber: 1.9 Consensus size: 400
2184935 CACGTTATTT
* * *
2184945 AAAAGTATCGACACAAAATAAAAAAGTGTCGCTACATGTTGTAGACCTATTCTCTTATAAAACCG
1 AAAAGTATCGACACAAAATAAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACCG
* *
2185010 GTATATTTATATCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
66 GTATATTTATATAGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTCCGATGTTTT
* * *
2185075 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
131 CGGGATCGACACTTTTTGAAAATGTATCGACACTTTATGAGTTCACCCTTTTTGGCATCCATTCT
* *
2185140 GGACATAAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAA
196 GGACATAAAGTATCGACACAATATTAAAAAGTGTCGATACATATTATAGACCTATTCTCTCATAA
* * *
2185205 AATCGATATATTTATACCGGCTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGAT
261 AATCGATATATGTATACCGACTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGAT
*
2185270 ATTTTCGGGATCGACACGTTTAATAAATGTATCGACACTTTGTGTGTTCATCCTTTTTGGCATCC
326 ATTTTCGGGATCGACACGTTTAATAAATGTATCGAAACTTTGTGTGTTCATCCTTTTTGGCATCC
2185335 ATCCTGAACA
391 ATCCTGAACA
* * * * * *
2185345 AAAAGTATCGACACAAATTTATATAGTGTCGATACATGTTATAGATCTATTCTCTCATAAAACTG
1 AAAAGTATCGACACAAAATAAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACCG
** *
2185410 GTATATTTATACTAGA-TATATTGTAAATTTACCTATTACATTATAATTATGGGTTCCGATGTTT
66 GTATATTTATA-TAGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTCCGATGTTT
*
2185474 TCGGGATCGACATTTTTTGAAAATGTATCGACACTTTATGAGTTCACCCTTTTTGGCATCCATTC
130 TCGGGATCGACACTTTTTGAAAATGTATCGACACTTTATGAGTTCACCCTTTTTGGCATCCATTC
* *
2185539 TGGACA-AATATTATCGACACAATATTAATAAGTGTCGATACATATTATAGACCTATTCTCTCAT
195 TGGACATAA-AGTATCGACACAATATTAAAAAGTGTCGATACATATTATAGACCTATTCTCTCAT
* *
2185603 AAAATCGGTATATGTATACCGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCG
259 AAAATCGATATATGTATACCGACTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCG
* * *
2185668 ATGTTTTTGGGATCGACACTTTTAATAAATGTATCGAAACTTT
324 ATATTTTCGGGATCGACACGTTTAATAAATGTATCGAAACTTT
2185711 ATGCGTGTAA
Statistics
Matches: 333, Mismatches: 31, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
399 2 0.01
400 328 0.98
401 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (400 bp):
AAAAGTATCGACACAAAATAAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACCG
GTATATTTATATAGATTATATTAAAAAATTACCTATTACATTATAATTATGGGTTCCGATGTTTT
CGGGATCGACACTTTTTGAAAATGTATCGACACTTTATGAGTTCACCCTTTTTGGCATCCATTCT
GGACATAAAGTATCGACACAATATTAAAAAGTGTCGATACATATTATAGACCTATTCTCTCATAA
AATCGATATATGTATACCGACTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGAT
ATTTTCGGGATCGACACGTTTAATAAATGTATCGAAACTTTGTGTGTTCATCCTTTTTGGCATCC
ATCCTGAACA
Found at i:2189145 original size:200 final size:200
Alignment explanation
Indices: 2188713--2189671 Score: 1532
Period size: 200 Copynumber: 4.8 Consensus size: 200
2188703 TATTTAAATT
** *
2188713 AGTATCGACACAAAATTAAAAAGTGTTAATACATGTTGTAGACCTATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTGGTA
* *
2188778 TATTTATACCGATTACATT-AAAAATTTACCTATTACATTATACTTATGGGTTTTGATGTTTCTG
66 TATTTATACCGGTTACATTGAAAAA-TTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* * * * *
2188842 GGATCGAAAC-TTTTATAAATGTATCGGCACTTTATGGTTGCACCCTTTATGGCATTCATTCTCG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
2188906 ACCAAA
195 ACCAAA
* *
2188912 AGTATCAACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACTGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTGGTA
* *
2188977 AACTTT-TACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTTTG
66 TA-TTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* * * * *
2189041 GGATCGATACTTTTTATAAATGGATTGACATTTTAGGGTTGCACCTTTTTTAGCATTCATTCTGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
2189106 ACCAAA
195 ACCAAA
* * *
2189112 AGTATCGATACAAAATTAAAAAGTGTTGATACATGTTGTAGACCTATTCTCTCATAAAACTAGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTGGTA
*
2189177 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTTGATGTTTCTGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
* * *
2189242 GATTGATACTTTTTATAAATGGATCGACATTTTATGGTTGCACCCTTCTTGGCATTCATTCTGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
2189307 CCAAA
196 CCAAA
* * *
2189312 AGTATCAACACAAAATTAAAAAGTGTCAATACATGTTGTAGACATATTCTCTCATAAAA-TCGGT
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACT-GGT
*
2189376 ATATTTATACCGGTTACATTGAAAAATTAGCTATTACATTATACTTATGGGTTTCGATGTTTCTG
65 ATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* *
2189441 AGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACTCTTTTTGGCATTCATTCTGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
2189506 ACCAAA
195 ACCAAA
2189512 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAA-TCGGT
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACT-GGT
2189576 ATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
65 ATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* * *
2189641 GGATCGATAATTTTTATATATGGATCAACAC
130 GGATCGATACTTTTTATAAATGGATCGACAC
2189672 ATAAGCTTAC
Statistics
Matches: 701, Mismatches: 54, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
199 123 0.18
200 578 0.82
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (200 bp):
AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTGGTA
TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
CCAAA
Found at i:2189941 original size:19 final size:19
Alignment explanation
Indices: 2189917--2189961 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
2189907 ATTCACATAT
2189917 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
2189936 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
2189955 AAAATTA
1 AAAATTA
2189962 ACCCTACCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:2191762 original size:33 final size:33
Alignment explanation
Indices: 2191725--2191788 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
2191715 TCTTAAGATC
*
2191725 ACCCCTTAACACCTCAACTTCTTTCACCACTTT
1 ACCCCTCAACACCTCAACTTCTTTCACCACTTT
*
2191758 ACCCCTCAACACCTCTACTTCTTTCACCACT
1 ACCCCTCAACACCTCAACTTCTTTCACCACT
2191789 CCATCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.31
Consensus pattern (33 bp):
ACCCCTCAACACCTCAACTTCTTTCACCACTTT
Found at i:2191847 original size:21 final size:21
Alignment explanation
Indices: 2191822--2191865 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
2191812 CCCCTTATGC
2191822 CTCTCAAGTGTATCTTCAACT
1 CTCTCAAGTGTATCTTCAACT
* * *
2191843 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCAACT
2191864 CT
1 CT
2191866 TGATTGTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.32, G:0.09, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCAACT
Found at i:2192271 original size:22 final size:23
Alignment explanation
Indices: 2192244--2192299 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
2192234 AACCTGCATT
2192244 TATAATAGA-ATT-TATAATTTTA
1 TATAATA-ACATTATATAATTTTA
*
2192266 TATAATAACTATTATATCATTTTA
1 TATAATAAC-ATTATATAATTTTA
*
2192290 TATAAAAACA
1 TATAATAACA
2192300 CAAAAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 1 0.03
22 7 0.24
23 4 0.14
24 17 0.59
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (23 bp):
TATAATAACATTATATAATTTTA
Found at i:2194529 original size:182 final size:182
Alignment explanation
Indices: 2194075--2194515 Score: 688
Period size: 182 Copynumber: 2.4 Consensus size: 182
2194065 AGTATCGACA
*
2194075 TTTACCGGTTTTATCATTTCGATACCGATTTTATCATATTTTTACCTGTTATATCGTTGTGGATC
1 TTTACCGGTTTTATCATTTCGATACCGGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATC
* * *
2194140 GATATATTTTTATAAAGTATCGACACTTTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAA
66 GATACATTTTTATAAAGTATCGACACTTTATAGGCGCTAAAAATATTTCTCTTTTAAATTCACAA
*
2194205 AGTGTCGATACTTATATTAAAGTATCGACACTTTAAATATATCCGGTAGCAC
131 AGTGTCGATACTTATATTAAAGAATCGACACTTTAAATATATCCGGTAGCAC
* * *
2194257 TTTACCGGTTTTATCATTTCGATACCGGTTTTGTCAAATTTTTACATGTTATATCGTTGTGGATC
1 TTTACCGGTTTTATCATTTCGATACCGGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATC
*
2194322 GATACATTTTTATAAAGTATCGACACTTTATAGGCGTTAAAAATATTTCTCTTTTAAATTCACAA
66 GATACATTTTTATAAAGTATCGACACTTTATAGGCGCTAAAAATATTTCTCTTTTAAATTCACAA
* **
2194387 AGTGTCGATCCTTATATTAAAGAATCGACACGTTT-AATATATCCGGTAGGGC
131 AGTGTCGATACTTATATTAAAGAATCGACAC-TTTAAATATATCCGGTAGCAC
* * * * * *
2194439 TTTACCGGTATTGTCTTTTCG-TGACCGGTTTTATCATATTTTTACCTGTTATATTGATATGGAT
1 TTTACCGGTTTTATCATTTCGAT-ACCGGTTTTATCATATTTTTACCTGTTATATCGTTGTGGAT
2194503 CGATACATTTTTA
65 CGATACATTTTTA
2194516 ATTTGGATCG
Statistics
Matches: 236, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
181 1 0.00
182 232 0.98
183 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.42
Consensus pattern (182 bp):
TTTACCGGTTTTATCATTTCGATACCGGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATC
GATACATTTTTATAAAGTATCGACACTTTATAGGCGCTAAAAATATTTCTCTTTTAAATTCACAA
AGTGTCGATACTTATATTAAAGAATCGACACTTTAAATATATCCGGTAGCAC
Done.