genome.fa.s823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000823.1 Hibiscus syriacus cultivar Beakdansim tig00001591_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113787

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4370--4701	137	2.4	137	85	5	427	32	13	12	40	1.82
7093--7117	2	12.5	2	100	0	50	48	0	0	52	1.00
18501--18586	18	4.8	18	91	0	136	29	33	18	18	1.95
18559--18697	65	2.2	64	80	6	156	33	18	17	30	1.94
26485--26523	19	2.0	20	90	5	62	17	2	23	56	1.53
27183--27309	65	2.0	64	84	4	166	31	21	14	32	1.94
33046--33091	19	2.3	20	88	3	67	19	4	0	76	0.96
33140--33185	23	2.0	24	83	12	60	30	2	0	67	1.03
39281--39325	22	2.0	23	83	12	58	77	8	6	6	1.11
42106--42156	19	2.7	20	84	9	70	17	3	1	76	1.03
42205--42250	5	8.8	5	86	9	65	23	0	0	76	0.79
44976--45019	22	2.0	22	86	13	63	50	4	4	40	1.43
45503--45556	25	2.2	25	100	0	108	33	31	14	20	1.93
45874--45921	24	2.0	24	95	0	87	45	14	12	27	1.81
46461--46524	31	2.1	29	82	5	74	32	18	9	39	1.83
51878--51929	20	2.5	21	85	14	65	50	7	3	38	1.50
54440--54525	31	2.9	32	78	11	85	29	18	6	45	1.75
57043--57112	28	2.4	30	77	15	76	24	12	5	57	1.57
57584--57623	17	2.3	18	87	8	57	22	2	7	67	1.28
64657--64714	18	3.3	16	77	15	53	79	0	15	5	0.90
71619--71651	16	2.1	16	88	11	50	69	15	3	12	1.30
74491--75382	300	3.0	300	87	3	1289	42	16	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76109--76158	20	2.5	20	77	6	57	28	20	16	36	1.93
76212--76261	18	2.6	18	81	12	55	24	8	28	40	1.83
88949--88982	18	1.9	17	94	5	59	47	5	8	38	1.59
89402--89454	25	2.1	25	83	13	65	52	18	3	24	1.62
97001--97025	13	1.9	13	100	0	50	24	20	16	40	1.91
97658--97691	18	1.9	18	94	5	61	47	5	8	38	1.59
98706--98744	5	7.2	5	88	11	51	20	38	17	23	1.93
98709--98743	11	3.1	11	91	4	52	17	42	17	22	1.88
102298--102373	16	5.2	16	70	23	78	40	17	27	14	1.88
102288--102373	28	3.1	28	100	0	172	39	17	27	15	1.89
102288--102359	12	5.3	12	70	23	54	37	18	29	15	1.91
105991--106044	25	2.2	25	96	0	99	12	22	31	33	1.92
107670--107753	42	2.0	42	86	4	116	29	13	19	38	1.89
109187--109234	24	2.0	24	87	0	69	10	12	2	75	1.14

Tables:   1

The End!