genome.fa.s8230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008230.1 Hibiscus syriacus cultivar Beakdansim tig00110866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  225826

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2363--2396	2	18.0	2	88	11	54	47	0	0	52	1.00
17745--17780	5	6.5	6	87	12	51	50	0	0	50	1.00
17747--17782	11	3.4	11	88	3	56	52	0	0	47	1.00
17745--17780	17	2.2	16	90	5	54	50	0	0	50	1.00
20391--20420	2	15.0	2	100	0	60	50	0	0	50	1.00
25936--25977	2	21.0	2	100	0	84	50	0	0	50	1.00
26050--26086	15	2.5	15	100	0	74	35	0	5	59	1.20
30423--30465	22	2.0	22	90	4	70	37	20	11	30	1.89
35599--35642	18	2.6	18	83	16	58	50	4	18	27	1.66
35603--35642	16	2.3	16	87	12	53	47	5	20	27	1.70
37951--38011	23	2.7	23	84	0	77	26	26	24	22	2.00
38038--38252	103	2.1	103	95	0	385	37	25	11	26	1.89
44774--44842	23	3.0	23	80	0	75	26	24	24	24	2.00
44858--45075	103	2.1	103	95	0	391	37	24	11	25	1.90
53803--53856	21	2.6	21	76	5	65	20	24	18	37	1.94
53830--53994	62	2.7	62	81	4	190	34	24	16	23	1.95
53906--54020	20	5.7	20	84	6	133	31	26	19	22	1.98
53903--54034	41	3.2	41	82	6	169	34	25	18	21	1.96
54756--54809	24	2.2	24	90	0	81	22	16	20	40	1.91
57143--57225	20	4.2	20	71	15	64	33	24	20	21	1.97
57189--57300	19	6.4	19	68	23	75	43	19	23	13	1.86
57209--57335	33	3.8	33	91	4	202	44	18	24	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57189--57339	19	8.7	18	66	22	74	43	19	24	12	1.85
57345--57428	33	2.5	33	90	0	132	10	21	20	47	1.80
57364--57435	19	4.1	19	72	17	82	12	23	18	45	1.83
57408--57451	19	2.3	19	84	0	52	18	18	18	45	1.86
57550--57583	14	2.4	14	90	0	50	47	17	0	35	1.48
57559--57585	14	1.9	14	100	0	54	37	22	0	40	1.54
58935--58995	21	3.0	20	73	7	59	21	19	36	22	1.95
58974--59053	42	1.9	42	84	0	106	22	17	38	21	1.93
59446--59750	94	3.3	94	93	3	512	46	19	12	21	1.82
61439--61553	20	6.2	20	75	17	104	45	18	23	13	1.84
61437--61582	33	4.1	39	78	17	138	44	19	23	12	1.84
61437--61582	19	8.1	19	71	17	114	44	19	23	12	1.84
61445--61577	52	2.5	53	87	2	196	44	20	23	12	1.84
61605--61644	19	2.1	19	90	0	62	12	22	17	47	1.81
62204--62297	20	4.7	20	81	2	116	22	21	17	39	1.92
62294--62347	20	2.7	21	80	8	67	46	14	18	20	1.84
81724--81883	65	2.5	63	85	6	205	30	22	19	28	1.98
81861--81903	19	2.4	19	84	7	54	23	27	20	27	1.99
82821--82886	18	3.7	18	83	0	87	19	24	33	22	1.97
88451--88493	21	2.0	21	100	0	86	58	13	0	27	1.37
94464--94557	46	2.0	46	100	0	188	20	14	17	47	1.82
102604--102663	16	4.0	14	79	16	59	31	0	25	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102933--103007	38	2.0	38	97	0	141	56	2	9	32	1.45
102938--103002	22	3.2	22	63	24	61	55	1	10	32	1.44
106338--106433	37	2.6	37	86	3	131	41	14	12	31	1.83
106827--106857	2	15.5	2	100	0	62	48	0	0	51	1.00
107315--107348	9	3.8	9	92	7	52	20	2	0	76	0.92
107315--107349	13	2.6	14	90	4	54	20	2	0	77	0.90
110445--110481	16	2.2	17	90	4	58	70	10	18	0	1.16
111132--111182	22	2.3	22	96	0	93	35	27	11	25	1.91
112043--112448	36	11.5	35	78	9	380	25	19	14	40	1.89
112095--112449	73	5.0	73	81	8	428	25	20	13	41	1.88
112101--112512	174	2.4	174	78	13	452	26	20	13	39	1.89
113186--114053	105	8.3	104	89	3	1230	33	26	18	22	1.96
113186--114053	205	4.1	210	91	2	1265	33	26	18	22	1.96
113186--114053	310	2.8	312	89	4	1277	33	26	18	22	1.96
114597--114701	37	2.8	37	84	2	131	40	15	14	29	1.86
115060--115098	14	2.8	13	88	11	51	23	2	2	71	1.10
115058--115100	18	2.5	17	81	7	52	25	2	2	69	1.12
115303--115327	2	12.5	2	100	0	50	48	0	0	52	1.00
115583--115616	9	3.8	9	92	7	52	20	2	0	76	0.92
115583--115617	13	2.6	14	90	4	54	20	2	0	77	0.90
117954--117980	3	9.0	3	100	0	54	0	33	0	66	0.92
127860--127884	12	2.1	12	100	0	50	24	0	16	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129005--129129	36	3.5	36	94	0	214	40	10	8	40	1.70
132537--132576	19	2.1	19	95	0	71	52	5	10	32	1.56
140454--140500	21	2.2	21	96	0	85	8	27	19	44	1.79
145065--145159	47	2.0	47	86	8	131	24	12	29	33	1.92
145828--145859	6	5.3	6	96	0	55	31	15	31	21	1.95
151194--151510	55	5.9	55	90	3	377	30	26	15	28	1.96
152904--153034	14	8.9	14	69	21	56	6	16	0	76	1.04
152863--152988	42	2.9	42	75	17	114	5	19	0	73	1.07
152890--153035	56	2.7	56	77	13	130	7	17	0	74	1.08
152863--153034	15	11.9	14	67	18	61	6	17	0	75	1.06
152863--153023	21	7.8	20	66	21	59	6	17	0	75	1.06
167250--167302	20	2.7	20	96	0	97	35	18	11	33	1.87
173421--173467	18	2.6	18	96	3	85	51	21	10	17	1.75
184980--185104	36	3.5	36	95	0	223	39	12	8	40	1.73
194042--194093	20	2.6	20	96	0	95	38	26	13	21	1.90
194083--194181	21	4.8	20	72	6	72	36	23	19	21	1.95
194148--194341	20	9.6	20	81	5	221	35	25	19	19	1.95
194148--194341	60	3.2	60	83	0	253	35	25	19	19	1.95
194722--194792	33	2.2	33	92	0	115	11	22	18	47	1.80
194913--194967	14	3.6	14	73	21	56	40	23	27	9	1.85
194913--194983	33	2.2	33	92	0	115	42	25	23	8	1.82
194979--195076	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195001--195090	14	5.7	14	74	23	81	8	25	23	42	1.83
194984--195098	33	3.5	33	95	0	212	9	24	20	45	1.81
196880--197252	93	4.0	93	99	0	739	21	12	19	46	1.83
197296--197423	19	7.3	19	72	18	107	45	28	17	9	1.79
197332--197423	33	2.8	32	88	6	132	45	27	18	8	1.78
197419--197553	19	7.6	19	75	16	128	11	19	23	45	1.82
197441--197497	14	3.7	14	77	20	60	10	21	22	45	1.82
197424--197516	33	2.8	33	95	0	168	10	20	21	47	1.80
199454--199489	14	2.6	14	95	0	63	33	0	22	44	1.53
199596--199697	19	5.6	19	84	13	151	44	17	23	14	1.86
199704--199889	33	5.5	33	75	17	127	14	20	18	46	1.84
199726--199947	52	4.2	52	90	4	252	13	21	17	46	1.83
199704--199975	85	3.2	83	88	6	354	13	20	18	46	1.84
199745--199975	33	6.8	33	77	14	220	13	20	19	46	1.83
202476--202522	24	2.0	24	87	8	69	38	21	14	25	1.92
203195--203563	20	18.5	20	86	4	458	20	18	26	34	1.96
204085--204167	38	2.2	38	89	8	134	39	40	9	9	1.71
208233--208309	34	2.3	34	93	4	129	37	7	3	50	1.50
214176--214236	29	2.0	31	84	6	81	49	0	9	40	1.36
215100--215128	12	2.4	12	100	0	58	51	24	0	24	1.48
218064--218088	12	2.1	12	100	0	50	32	16	0	52	1.44
220227--220391	83	2.0	83	88	4	244	41	10	12	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223106--223189	28	2.9	29	77	10	109	13	34	32	20	1.91
223207--223289	23	3.6	23	88	3	114	9	36	27	26	1.88
223291--223344	20	2.7	20	97	0	99	11	27	37	24	1.89
223331--223358	14	2.0	14	100	0	56	7	28	42	21	1.79
223291--223344	10	5.4	10	81	16	67	11	27	37	24	1.89

Tables:   1

The End!