Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008232.1 Hibiscus syriacus cultivar Beakdansim tig00110869_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 42309
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:11434 original size:18 final size:19

Alignment explanation


    Indices: 11399--11435  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 19

      11389 CACGGAATGT

                                
      11399 AAGATTACCAGTGGGAATAA
          1 AAGATTACCAG-GGGAATAA

                              
      11419 AAGATTACCA-GGGAATA
          1 AAGATTACCAGGGGAATA

      11436 GGATTACTGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    7  0.41
  20   10  0.59

ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19


Consensus pattern (19 bp):   
AAGATTACCAGGGGAATAA

Found at i:11617 original size:38 final size:37

Alignment explanation


    Indices: 11582--11652  Score: 108
    Period size: 37  Copynumber: 1.9  Consensus size: 37

      11572 TACAAATTGT

                                                  
      11582 AAAATATTTATAT-ATTTTTCTTTAAAAAATTAAATTC
          1 AAAATATTTATATAATTTTT-TTTAAAAAATTAAATTC

             *                      *         
      11619 ATAATATTTATATAATTTTTTTTACAAAATTAAA
          1 AAAATATTTATATAATTTTTTTTAAAAAATTAAA

      11653 AATATAAAAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  37   25  0.81
  38    6  0.19

ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49


Consensus pattern (37 bp):   
AAAATATTTATATAATTTTTTTTAAAAAATTAAATTC
Done.