genome.fa.s8234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008234.1 Hibiscus syriacus cultivar Beakdansim tig00110878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105818

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2644--2685	19	2.2	19	95	0	75	50	16	7	26	1.71
3573--3620	22	2.1	23	85	11	64	37	2	4	56	1.30
8734--8804	30	2.4	30	83	4	81	21	28	22	28	1.99
9985--10112	61	2.1	60	79	4	132	40	9	4	45	1.57
11709--11938	121	1.9	119	94	1	406	37	11	11	38	1.79
18038--18077	20	2.0	20	90	0	62	50	0	0	50	1.00
18914--18984	35	2.0	35	97	0	133	25	7	5	61	1.43
20278--20634	30	11.9	30	90	0	525	9	25	32	32	1.88
29386--29432	12	3.7	12	81	15	58	46	17	19	17	1.84
29486--29513	10	2.8	10	100	0	56	7	21	17	53	1.67
31726--31765	21	1.9	21	94	0	71	30	15	7	47	1.72
31760--31858	33	3.0	33	94	1	164	32	7	15	45	1.73
31844--31898	13	4.2	13	75	13	58	34	3	12	49	1.59
31922--31957	11	3.4	11	96	3	65	8	25	8	58	1.55
32325--32358	18	1.9	18	94	5	61	38	11	11	38	1.79
32307--32358	16	3.2	16	78	5	59	34	9	11	44	1.73
33895--33923	15	1.9	15	100	0	58	55	10	0	34	1.34
34511--34589	39	2.0	39	90	0	122	48	15	13	22	1.80
37277--37352	35	2.2	35	90	0	116	39	22	1	36	1.63
37749--37996	130	1.9	130	94	0	442	37	14	12	36	1.84
37763--38027	130	2.0	129	83	4	327	40	12	12	34	1.81
38325--38387	28	2.3	27	78	8	63	46	1	3	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38467--38500	16	2.0	18	88	11	54	64	5	2	26	1.30
38556--38615	22	2.7	21	77	10	57	43	3	3	50	1.35
39447--39476	15	2.0	15	100	0	60	13	13	46	26	1.80
42681--43637	479	2.0	477	96	0	1761	32	29	16	21	1.95
54461--54516	14	4.3	14	76	17	66	10	12	23	53	1.69
54468--54537	24	2.9	24	87	4	97	12	10	18	58	1.62
55262--55336	10	7.7	10	69	21	61	9	12	21	57	1.62
55268--55332	16	4.1	16	95	0	121	7	12	23	56	1.61
65498--65526	5	5.8	5	100	0	58	20	0	20	58	1.39
72374--72401	8	3.5	8	100	0	56	78	10	0	10	0.96
76270--76332	21	2.8	22	83	11	67	55	3	0	41	1.16
76287--76332	23	2.0	22	87	8	65	58	2	0	39	1.10
76291--76387	15	6.0	15	70	20	63	62	2	0	35	1.07
76351--76394	16	2.8	16	86	3	63	61	4	0	34	1.16
76337--76394	31	1.9	29	86	13	82	63	3	0	32	1.11
78993--79053	2	30.5	2	100	0	122	50	0	0	49	1.00
89801--89868	3	22.7	3	100	0	136	67	0	0	32	0.91
90135--90193	21	2.8	21	79	7	57	35	15	5	44	1.68
100824--100895	20	3.5	20	88	1	99	40	18	23	18	1.91
100881--100958	41	1.9	41	86	0	111	39	21	16	21	1.92
100884--100978	20	4.7	20	80	2	91	34	24	17	23	1.96
101166--101209	22	2.0	22	95	0	79	20	45	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101469--101506	20	1.9	20	88	0	58	13	15	21	50	1.78
102799--102837	18	2.2	18	90	0	60	25	43	17	12	1.85
103307--103353	21	2.3	21	88	3	69	40	25	19	14	1.90
103363--103420	14	3.9	14	79	16	71	48	24	17	10	1.78
103347--103437	32	2.8	33	94	3	166	47	21	18	12	1.81
103454--103510	14	3.9	14	72	20	53	14	17	21	47	1.82
103449--103526	31	2.4	33	89	4	115	14	19	20	46	1.84
103476--103567	19	5.1	19	74	11	68	15	21	20	42	1.89
105394--105429	14	2.6	14	90	0	54	30	0	22	47	1.52
105513--105550	20	1.9	20	94	0	67	39	23	21	15	1.92
105545--105612	19	3.8	19	85	14	101	47	17	22	13	1.82
105640--105708	20	3.5	20	96	4	131	15	23	27	33	1.95

Tables:   1

The End!