genome.fa.s8235.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008235.1 Hibiscus syriacus cultivar Beakdansim tig00110879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  820011

Tables:   1   2   3   4   

This is table  4  of  4  ( 451 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705748--705802	22	2.5	22	93	0	101	34	10	14	40	1.81
706317--706648	166	2.0	168	89	5	508	36	13	11	38	1.81
706651--707137	76	6.4	76	94	1	834	23	20	21	35	1.96
707268--707344	3	24.3	3	79	7	73	38	0	1	59	1.06
708612--708685	20	3.7	20	80	3	94	40	18	22	17	1.91
708629--708704	21	3.7	21	78	3	91	40	17	25	17	1.90
708612--708704	41	2.3	41	98	0	177	39	17	24	18	1.91
708696--708787	20	4.6	20	79	2	85	34	23	18	22	1.96
708975--709018	22	2.0	22	90	0	70	20	43	15	20	1.88
709263--709300	20	1.9	20	88	0	58	13	15	21	50	1.78
710620--710664	18	2.5	18	88	0	72	26	44	15	13	1.83
711146--711191	20	2.3	20	88	0	65	36	26	21	15	1.93
711201--711258	14	3.9	14	79	16	71	48	24	17	10	1.78
711185--711275	32	2.8	32	93	3	146	48	21	17	12	1.80
711368--711422	19	2.8	19	81	5	65	18	23	21	36	1.95
711306--711422	18	6.5	19	77	10	104	13	21	23	41	1.88
713289--713324	14	2.6	14	90	0	54	30	0	22	47	1.52
713441--713508	19	3.8	19	81	14	92	48	16	22	13	1.80
713527--713584	20	2.9	20	94	0	98	17	22	22	37	1.93
714518--714571	24	2.2	24	90	0	81	24	16	20	38	1.92
714746--714770	12	2.1	12	100	0	50	72	0	28	0	0.86
717038--717090	20	2.7	20	88	2	81	11	20	18	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717197--717233	14	2.6	14	91	0	65	45	24	0	29	1.53
718591--718657	21	3.2	21	68	4	55	19	20	35	23	1.95
718591--718713	42	2.9	41	80	7	113	22	17	36	22	1.95
719816--719858	21	2.0	22	82	13	54	48	2	4	44	1.36
720721--720819	33	3.0	33	89	1	144	39	27	22	11	1.88
720696--720861	20	9.1	19	74	16	136	43	22	21	12	1.86
720857--720923	19	3.5	19	85	2	89	10	16	25	47	1.78
721430--721483	20	2.7	20	91	0	81	29	20	25	24	1.99
721492--721543	18	2.7	20	85	11	81	25	19	25	30	1.98
721532--721583	20	2.5	21	87	3	70	19	25	17	38	1.93
721614--721654	21	2.0	21	85	0	55	34	31	17	17	1.93
724891--724943	19	2.7	20	79	8	63	32	22	24	20	1.98
724959--724988	14	2.1	14	93	0	51	40	10	23	26	1.86
725012--725046	18	1.9	18	100	0	70	34	5	31	28	1.81
725375--725453	21	3.9	21	78	6	83	29	26	20	24	1.99
725557--725613	21	2.7	21	91	0	78	40	14	22	22	1.90
725658--725694	19	1.9	19	94	0	65	27	16	24	32	1.96
727427--727494	31	2.2	31	86	5	93	38	22	20	19	1.94
729358--729845	243	2.0	241	97	2	917	41	13	18	25	1.88
730529--730918	6	67.8	6	85	13	538	50	17	0	32	1.50
730531--730918	49	8.0	50	82	14	463	50	17	0	32	1.50
738418--738453	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739557--739649	21	4.5	21	78	4	100	39	18	24	17	1.91
739557--739649	41	2.3	41	100	0	186	39	18	24	17	1.91
739576--739710	41	3.3	41	82	6	132	38	20	21	19	1.94
739638--739729	20	4.6	20	79	2	85	33	25	18	22	1.97
740286--740330	19	2.4	19	92	0	72	48	26	15	8	1.74
740326--740510	19	10.1	19	77	14	174	11	22	22	43	1.85
740326--740510	33	5.1	38	79	12	174	11	22	22	43	1.85
740453--740510	20	2.9	20	80	10	64	13	24	18	43	1.87
742509--742631	42	2.9	42	80	2	122	22	36	17	22	1.95
742565--742631	21	3.2	21	66	6	55	23	35	20	19	1.95
743990--744025	14	2.6	14	95	0	63	30	0	25	44	1.54
744203--744353	19	8.7	19	64	21	80	15	22	20	41	1.89
744207--744333	33	3.9	32	87	8	193	14	22	19	42	1.88
744200--744332	66	2.0	66	97	0	248	16	22	19	41	1.90
746622--746646	12	2.1	12	100	0	50	0	28	0	72	0.86
746821--746876	24	2.3	24	87	0	85	39	19	16	25	1.91
747914--747964	20	2.5	20	96	0	93	33	25	23	17	1.96
747988--748019	14	2.3	14	100	0	64	12	21	18	46	1.82
747971--748143	52	3.2	52	86	7	238	15	20	18	45	1.85
747971--748114	19	7.8	19	90	7	235	15	20	16	47	1.82
750130--750220	19	4.8	19	83	4	112	41	23	21	13	1.88
750112--750220	39	2.8	38	78	5	121	42	23	20	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750187--750231	18	2.4	18	88	3	63	46	26	17	8	1.78
750249--750306	14	3.9	14	79	16	71	10	17	24	48	1.78
750232--750322	32	2.8	33	94	3	166	12	18	21	47	1.81
750307--750361	20	2.8	19	83	8	65	16	23	23	36	1.94
750834--750878	18	2.5	18	88	0	72	13	15	44	26	1.83
752199--752252	20	2.8	20	82	2	74	50	22	14	12	1.77
752486--752529	22	2.0	22	95	0	79	18	15	45	20	1.85
752714--752814	20	4.9	21	71	12	59	18	19	18	42	1.89
752759--752851	41	2.3	41	100	0	150	17	24	18	39	1.91
752759--752851	20	4.6	20	78	4	96	17	24	18	39	1.91
761667--761697	16	1.9	16	93	0	53	54	16	9	19	1.68
762144--762188	23	2.0	23	86	4	65	31	2	0	66	1.04
790534--790578	2	22.5	2	100	0	90	48	0	0	51	1.00
796055--796099	23	1.9	24	86	13	67	80	15	4	0	0.87
796056--796108	26	2.0	27	88	3	81	79	15	5	0	0.91
807626--807684	21	2.8	21	84	2	82	23	32	27	16	1.96
809235--809288	18	3.0	18	81	7	65	46	24	27	1	1.63
811182--811239	18	3.1	19	76	16	66	27	27	18	25	1.98
813009--813221	59	3.6	59	81	9	245	36	5	25	32	1.79
813009--813221	118	1.8	118	85	6	306	36	5	25	32	1.79
815326--815529	41	5.0	41	91	4	315	19	16	24	39	1.91
815394--815505	20	5.5	20	72	4	107	17	16	25	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815698--815749	20	2.6	20	96	0	95	40	25	25	9	1.85
815738--815791	21	2.6	21	96	0	99	29	27	16	25	1.97
816367--816455	2	44.0	2	95	2	160	49	0	2	48	1.13

Tables:   1   2   3   4

The End!