Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008237.1 Hibiscus syriacus cultivar Beakdansim tig00110883_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70346

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10033--10489
105
4.4
105
89
2
688
32
25
19
22
1.97
13045--13449
39
10.6
38
75
14
259
42
3
6
47
1.46
13165--13256
48
2.0
48
87
8
136
45
2
5
46
1.38
13083--13334
122
2.1
123
85
7
336
45
1
5
47
1.37
13212--13390
73
2.5
73
84
9
242
43
4
7
44
1.53
13337--13395
12
5.2
12
70
12
52
38
8
8
44
1.65
13219--13438
73
3.1
71
82
7
225
41
4
7
46
1.52
14579--14618
19
2.2
18
90
4
62
12
7
5
75
1.18
14721--14785
8
8.4
8
72
23
50
10
12
0
76
1.01
14721--14810
23
3.7
23
81
12
83
11
12
0
76
1.02
14840--14890
10
5.1
10
92
0
75
43
0
5
50
1.26
14840--14890
6
8.5
6
91
0
75
43
0
5
50
1.26
14840--14890
4
12.8
4
91
0
75
43
0
5
50
1.26
15459--15496
19
2.0
19
85
10
51
55
0
0
44
0.99
15914--15953
21
1.9
21
84
0
53
37
17
10
35
1.83
19477--19517
2
21.5
2
90
9
68
48
0
0
51
1.00
21015--21062
22
2.2
21
85
3
60
60
4
0
35
1.16
21491--21822
168
2.0
164
96
3
612
36
10
7
45
1.67
22204--22320
58
2.0
58
100
0
234
38
17
15
29
1.90
22782--22830
2
25.5
2
91
8
84
51
0
0
48
1.00
22782--22830
17
2.9
17
96
3
91
51
0
0
48
1.00
32740--33126
184
2.1
183
92
3
638
42
2
9
45
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33589--34670
543
2.0
541
97
0
2047
36
15
9
38
1.81
40287--40370
3
27.7
3
87
2
123
36
1
0
61
1.04
40290--40382
9
10.0
9
76
14
73
39
1
0
59
1.05
40839--40908
22
2.8
26
70
18
67
70
5
24
0
1.09
40844--40893
22
2.3
22
86
3
75
68
6
26
0
1.13
40956--40987
15
2.1
15
94
0
55
78
0
21
0
0.76
41842--41887
13
3.5
13
82
11
58
41
0
0
58
0.98
42511--42592
26
3.0
26
74
12
60
23
4
1
70
1.13
42583--42619
15
2.7
15
88
12
53
24
5
8
62
1.44
53228--53297
1
70.0
1
85
0
95
92
0
7
0
0.37
53216--53297
14
5.7
14
88
4
101
90
0
9
0
0.46
54428--54888
83
5.6
83
94
0
807
28
13
22
35
1.92
54428--54888
165
2.8
166
94
0
825
28
13
22
35
1.92
54428--54888
248
1.9
248
97
0
868
28
13
22
35
1.92
55754--56403
113
5.8
113
95
0
1122
38
14
18
28
1.90
56722--56834
3
37.7
3
98
0
208
33
1
0
64
1.04
57307--57356
22
2.3
22
86
3
75
68
6
26
0
1.13
57303--57370
22
2.8
26
69
26
67
69
5
25
0
1.11
57418--57449
15
2.1
15
94
0
55
78
0
21
0
0.76
58301--58346
13
3.5
13
82
11
58
41
0
0
58
0.98
59402--59487
24
3.6
24
78
12
88
11
12
23
52
1.72
59430--59481
14
4.0
14
76
19
58
9
9
25
55
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59424--59500
24
3.2
24
88
3
93
12
10
20
55
1.66
60233--60299
16
4.3
16
92
3
102
10
10
19
59
1.58
60229--60291
32
2.0
32
96
0
117
7
12
22
57
1.61
60361--60393
16
2.1
16
100
0
66
6
12
24
57
1.57
61005--61145
34
4.3
34
77
15
143
59
1
0
39
1.06
61071--61177
2
58.5
2
77
17
99
56
0
0
43
0.99
61064--61171
28
3.8
28
85
6
137
58
0
0
41
0.98
61064--61165
53
1.9
55
88
11
158
58
0
0
41
0.98
67813--67850
14
2.6
15
83
8
51
73
0
7
18
1.06

Tables:   1

The End!