genome.fa.s8239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008239.1 Hibiscus syriacus cultivar Beakdansim tig00110886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93799

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691--751	21	3.0	21	78	2	70	22	3	29	44	1.69
697--736	14	2.9	14	92	0	62	22	2	27	47	1.64
803--834	7	4.6	7	92	0	55	18	0	34	46	1.49
879--941	11	5.9	11	69	14	51	38	1	3	57	1.24
1210--1344	62	2.2	62	93	2	236	50	11	7	31	1.65
4714--4769	20	2.8	20	74	15	53	35	5	26	32	1.79
4781--4825	18	2.5	18	100	0	90	13	11	26	48	1.75
7819--8072	42	6.0	42	87	1	339	18	22	24	35	1.95
8496--8524	2	14.5	2	100	0	58	48	0	0	51	1.00
8055--9702	543	3.0	542	91	2	2598	27	12	18	40	1.87
15350--15401	13	4.0	13	89	0	77	17	38	21	23	1.93
15382--15439	25	2.3	27	85	8	77	17	25	24	32	1.96
16290--16500	42	5.0	42	95	0	386	18	21	26	34	1.96
20195--20232	20	1.9	20	94	0	67	44	10	23	21	1.83
20195--20238	20	2.3	19	88	7	63	45	9	25	20	1.80
20383--20464	37	2.2	37	82	10	96	52	3	1	42	1.26
20383--20469	38	2.3	38	80	13	99	50	3	2	43	1.31
21216--21270	26	2.2	24	84	12	67	54	5	0	40	1.23
22870--22900	5	6.2	5	92	0	53	38	3	22	35	1.71
25036--25064	2	14.5	2	100	0	58	48	0	0	51	1.00
25315--25346	2	16.0	2	100	0	64	50	0	0	50	1.00
25663--25701	20	2.0	20	85	10	53	33	7	10	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26982--27074	44	2.2	41	83	12	127	34	5	26	33	1.79
26984--27074	19	4.4	20	79	17	114	35	5	27	31	1.80
27434--27806	21	18.4	21	79	6	369	32	24	21	20	1.97
27414--27856	40	11.1	40	84	6	508	34	23	20	22	1.97
27434--27817	203	1.9	200	90	4	619	33	24	21	21	1.97
27414--27817	61	6.7	61	80	5	355	33	24	21	21	1.97
28640--28695	21	2.7	21	75	8	60	57	5	3	33	1.39
28783--28876	38	2.5	38	92	3	163	38	40	11	9	1.74
28860--28954	31	2.9	33	75	15	90	43	31	10	14	1.80
31556--31584	2	15.0	2	92	7	51	48	0	0	51	1.00
33219--33297	36	2.2	36	95	0	140	37	18	16	26	1.92
34646--34674	2	14.5	2	100	0	58	48	0	0	51	1.00
36328--36404	38	2.0	40	84	5	104	23	7	5	63	1.41
36646--36705	11	5.5	11	71	15	52	18	3	5	73	1.16
36649--36712	33	2.0	31	87	6	92	17	3	6	73	1.17
39021--39176	59	2.7	59	89	1	233	32	8	17	42	1.79
39254--39357	42	2.5	42	80	0	127	26	21	19	32	1.97
42786--42907	11	11.4	10	68	22	54	76	3	16	4	1.08
42825--42907	8	10.1	8	75	13	53	78	2	18	1	0.93
42832--42911	26	3.0	26	82	13	94	78	2	16	2	0.96
42819--42907	23	3.9	22	72	24	76	77	2	17	2	0.98
54119--54290	51	3.1	55	73	15	174	30	9	18	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55356--55883	91	5.8	91	90	2	814	38	15	21	24	1.92
55356--55879	272	1.9	269	92	2	870	38	15	21	24	1.92
55356--55883	181	2.9	181	88	2	803	38	15	21	24	1.92
56976--57043	21	3.2	21	76	0	73	41	20	16	22	1.90
57661--57699	19	2.1	19	85	0	51	23	20	28	28	1.99
64044--64094	18	2.7	18	77	16	50	45	21	7	25	1.79
64041--64124	20	4.2	21	73	10	77	44	21	8	26	1.80
66628--66687	29	2.0	30	84	9	79	16	5	6	71	1.25
69026--69188	59	2.8	59	88	2	240	32	11	16	39	1.84
69266--69348	42	2.0	42	88	4	123	27	19	19	33	1.96
69502--70343	258	3.3	256	88	2	1199	32	15	16	34	1.91
70027--70118	42	2.2	41	86	1	130	22	22	23	30	1.99
70017--70138	41	2.9	42	79	6	133	24	22	22	29	1.99
74070--74129	30	2.0	30	87	6	86	18	5	13	63	1.47
75972--77453	200	7.4	200	81	4	1591	39	13	13	34	1.83
76969--77015	20	2.3	21	78	10	53	34	8	12	44	1.73
75970--77453	597	2.5	601	88	3	2167	39	13	13	33	1.83
78297--78426	35	3.7	36	78	7	131	35	15	20	29	1.93
78298--78435	71	1.9	71	83	2	179	35	16	18	28	1.93
79502--79563	27	2.3	27	94	0	106	25	16	11	46	1.80
80157--80221	19	3.4	18	77	10	67	32	15	26	26	1.95
81360--82655	226	5.7	225	90	1	1792	31	13	13	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85018--85047	2	15.5	2	93	6	53	53	0	0	46	1.00
85922--86092	85	2.0	85	98	0	333	27	16	17	38	1.91
87534--87569	17	2.1	17	89	0	54	52	13	8	25	1.68
89032--89134	52	2.0	52	98	0	197	41	13	23	21	1.88
93581--93683	52	2.0	52	98	0	197	41	13	23	21	1.88

Tables:   1

The End!