Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 73
Found at i:2806709 original size:18 final size:18
Alignment explanation
Indices: 2806683--2806729 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
2806673 GTTATACAAG
*
2806683 TGTGACTATTCCAAGACT
1 TGTGCCTATTCCAAGACT
*
2806701 TGTGCCTATTCCTAGACT
1 TGTGCCTATTCCAAGACT
2806719 TGTGCCTATTC
1 TGTGCCTATTC
2806730 TAGATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (18 bp):
TGTGCCTATTCCAAGACT
Found at i:2807172 original size:77 final size:79
Alignment explanation
Indices: 2807037--2807197 Score: 202
Period size: 77 Copynumber: 2.1 Consensus size: 79
2807027 TAAACATTCT
* **
2807037 TTTAAGTAAACATTAAACGAATGTAATTCTGATTACAACTCTTTTAATGAATATTTAATTCAGAA
1 TTTAAATAAACATTAAACGAATGTAATTCAAATTACAACTCTTTTAATGAATATTTAATT-AGAA
*
2807102 -TAATTAAATAAGAG
65 TTAATTAAATAAGAA
* * * * * *
2807116 TTTAAATAAACATTAAA-TAGTGTAATTCAAATTATAATTC-TTTAATGGATATTTAATTTGAAT
1 TTTAAATAAACATTAAACGAATGTAATTCAAATTACAACTCTTTTAATGAATATTTAATTAGAAT
2807179 TAATTAAATAAGAA
66 TAATTAAATAAGAA
2807193 TTTAA
1 TTTAA
2807198 TTAATTCAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
76 3 0.04
77 35 0.49
78 17 0.24
79 16 0.23
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (79 bp):
TTTAAATAAACATTAAACGAATGTAATTCAAATTACAACTCTTTTAATGAATATTTAATTAGAAT
TAATTAAATAAGAA
Found at i:2809497 original size:20 final size:20
Alignment explanation
Indices: 2809474--2809514 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2809464 AAGAAAACTT
*
2809474 TAAAGGAAAATAAAAAAAAC
1 TAAAGGAAAAGAAAAAAAAC
* *
2809494 TAAAGTAAAAGAAAAATAAC
1 TAAAGGAAAAGAAAAAAAAC
2809514 T
1 T
2809515 CTATAATGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15
Consensus pattern (20 bp):
TAAAGGAAAAGAAAAAAAAC
Found at i:2810600 original size:29 final size:29
Alignment explanation
Indices: 2810555--2810612 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
2810545 TACTATATAT
2810555 TTTTTCGTGCACAGTTCAAACCAAAACTGA
1 TTTTTCGTGCACAGTTCAAACC-AAACTGA
* *
2810585 TTTTTC-TGCACTGTTCGAACCAAACTGA
1 TTTTTCGTGCACAGTTCAAACCAAACTGA
2810613 ACTGTTCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 7 0.27
29 13 0.50
30 6 0.23
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (29 bp):
TTTTTCGTGCACAGTTCAAACCAAACTGA
Found at i:2820403 original size:4 final size:5
Alignment explanation
Indices: 2820375--2820405 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
2820365 AAACAAAAAG
2820375 AAGAA AAGAA AAGAA AAGAA AAG-A AAGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AA
2820406 ATTGAAGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:2820406 original size:15 final size:15
Alignment explanation
Indices: 2820375--2820405 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
2820365 AAACAAAAAG
2820375 AAGAAAAGAAAAGAA
1 AAGAAAAGAAAAGAA
2820390 AAGAAAAG-AAAGAA
1 AAGAAAAGAAAAGAA
2820404 AA
1 AA
2820406 ATTGAAGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAAAAGAA
Found at i:2827778 original size:16 final size:15
Alignment explanation
Indices: 2827757--2827791 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
2827747 TAAATAAATA
2827757 TAATAAATTATTAAAG
1 TAATAAATTA-TAAAG
2827773 TAATAAATTATAAAG
1 TAATAAATTATAAAG
2827788 -AATA
1 TAATA
2827792 CTTTAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (15 bp):
TAATAAATTATAAAG
Found at i:2827990 original size:17 final size:17
Alignment explanation
Indices: 2827965--2828003 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
2827955 AAATCGAAAT
* * *
2827965 ATATTAATATTATATTA
1 ATATAAATATTACAATA
2827982 ATATAAATATTACAATA
1 ATATAAATATTACAATA
2827999 ATATA
1 ATATA
2828004 GAAATTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAAATATTACAATA
Found at i:2833230 original size:10 final size:10
Alignment explanation
Indices: 2833215--2833244 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
2833205 TTTTTAATGC
2833215 CCGGTCAACG
1 CCGGTCAACG
2833225 CCGGTCAACG
1 CCGGTCAACG
2833235 CCGGTCAACG
1 CCGGTCAACG
2833245 GTCAACGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.30, T:0.10
Consensus pattern (10 bp):
CCGGTCAACG
Found at i:2833248 original size:17 final size:17
Alignment explanation
Indices: 2833226--2833267 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
2833216 CGGTCAACGC
**
2833226 CGGTCAACGCCGGTCAA
1 CGGTCAACGCAAGTCAA
*
2833243 CGGTCAACGCAAGTTAA
1 CGGTCAACGCAAGTCAA
2833260 CGGTCAAC
1 CGGTCAAC
2833268 AGTCGACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (17 bp):
CGGTCAACGCAAGTCAA
Found at i:2850035 original size:21 final size:21
Alignment explanation
Indices: 2850011--2850064 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
2850001 TCAAGTAGGA
2850011 AGTATTGATACCGAGGGGAGG
1 AGTATTGATACCGAGGGGAGG
*
2850032 AGTATTGATACCGAGGGGATG
1 AGTATTGATACCGAGGGGAGG
2850053 AGTATTGATACC
1 AGTATTGATACC
2850065 AATCTCTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.35, T:0.24
Consensus pattern (21 bp):
AGTATTGATACCGAGGGGAGG
Found at i:2852839 original size:5 final size:5
Alignment explanation
Indices: 2852707--2852835 Score: 249
Period size: 5 Copynumber: 25.8 Consensus size: 5
2852697 ATGTTTATCT
2852707 GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC
1 GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC
2852757 GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC
1 GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC GTTAC
*
2852807 GTTAC GTTAC GTTAC GTTAC GTTAT GTTA
1 GTTAC GTTAC GTTAC GTTAC GTTAC GTTA
2852836 TGTTGATATA
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 123 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (5 bp):
GTTAC
Found at i:2860827 original size:21 final size:22
Alignment explanation
Indices: 2860778--2860839 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 22
2860768 AGGTTTCTAT
2860778 CCAACAAATGATCGATCCCTCAGGA
1 CCAA-AAA-GATCGATCCCTCA-GA
2860803 --AAAAAGATCGATCCCTC-GA
1 CCAAAAAGATCGATCCCTCAGA
* *
2860822 CCAAAAGGATAGATCCCT
1 CCAAAAAGATCGATCCCT
2860840 TTTTCCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 2 0.06
21 26 0.79
22 3 0.09
23 2 0.06
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (22 bp):
CCAAAAAGATCGATCCCTCAGA
Found at i:2861151 original size:5 final size:5
Alignment explanation
Indices: 2861141--2861252 Score: 125
Period size: 5 Copynumber: 22.4 Consensus size: 5
2861131 TACTCTAGCA
* * * * * * *
2861141 TTATG TTATG TTATG TCATG TCATG TCATG TCATG TCATG TCATG TCATG
1 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG
* * * *
2861191 TCATG TCATG TCATG TCATG TTATG TTATG TTATG TTATG TTATG TTATG
1 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG
2861241 TTATG TTATG TT
1 TTATG TTATG TT
2861253 GATATCTTAA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 105 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.51
Consensus pattern (5 bp):
TTATG
Found at i:2868304 original size:2 final size:2
Alignment explanation
Indices: 2868297--2868458 Score: 256
Period size: 2 Copynumber: 82.0 Consensus size: 2
2868287 GTACGTACGC
2868297 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
2868339 GT GT GT GT GT GT GT GT GT -T GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
2868380 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT -T
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
* * * * * *
2868421 GT AT GT CT GT GT GT CT GT GT GT CT AT GT GT AT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
2868459 ATGTTTATGT
Statistics
Matches: 147, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
1 2 0.01
2 145 0.99
ACGTcount: A:0.02, C:0.02, G:0.46, T:0.51
Consensus pattern (2 bp):
GT
Found at i:2868599 original size:4 final size:4
Alignment explanation
Indices: 2868590--2868699 Score: 53
Period size: 4 Copynumber: 27.5 Consensus size: 4
2868580 ATTATATATT
* * * ** * *
2868590 CATA CATA CAT- GATA TATA CATA C-TG CATA GTTA CATG CATA CTTA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * *
2868636 CATT CATA CATA TATA TATA TGCAAA CATA CATA CATG CATT CATG CATG
1 CATA CATA CATA CATA CATA --CATA CATA CATA CATA CATA CATA CATA
2868686 CATA CATA CATA CA
1 CATA CATA CATA CA
2868700 CACCTGCACA
Statistics
Matches: 79, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
3 4 0.05
4 73 0.92
6 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (4 bp):
CATA
Found at i:2876120 original size:16 final size:17
Alignment explanation
Indices: 2876099--2876131 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2876089 AGCTATACAA
2876099 AACCA-TAGTTAGTGAT
1 AACCATTAGTTAGTGAT
*
2876115 AACCATTGGTTAGTGAT
1 AACCATTAGTTAGTGAT
2876132 GTACAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (17 bp):
AACCATTAGTTAGTGAT
Found at i:2882482 original size:17 final size:17
Alignment explanation
Indices: 2882454--2882521 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
2882444 TAAGATTTAG
*
2882454 TTAATAAATGAACTAGT
1 TTAATGAATGAACTAGT
*
2882471 TTGATGAATGAACTAGT
1 TTAATGAATGAACTAGT
* *
2882488 TTAATTAATGAACTAACT
1 TTAATGAATGAACT-AGT
* *
2882506 TTATTAAATGAACTAG
1 TTAATGAATGAACTAG
2882522 ATGCATGAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 28 0.67
18 14 0.33
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (17 bp):
TTAATGAATGAACTAGT
Found at i:2883030 original size:17 final size:17
Alignment explanation
Indices: 2883008--2883079 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
2882998 AATTAAGAGA
2883008 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* *
2883025 TAGTTTTATTAATGAAC
1 TAGTTTAATAAATGAAC
* *
2883042 TATTTTAATTAATGAAC
1 TAGTTTAATAAATGAAC
* *
2883059 TAACTTTATTAAATGAAC
1 T-AGTTTAATAAATGAAC
2883077 TAG
1 TAG
2883080 ATGTATGAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
17 32 0.70
18 14 0.30
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.42
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:2883050 original size:34 final size:35
Alignment explanation
Indices: 2883011--2883078 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
2883001 TAAGAGATAG
**
2883011 TTTAATAAATGAACTAGTTTTATT-AATGAACTAT
1 TTTAATAAATGAACTAACTTTATTAAATGAACTAT
*
2883045 TTTAATTAATGAACTAACTTTATTAAATGAACTA
1 TTTAATAAATGAACTAACTTTATTAAATGAACTA
2883079 GATGTATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (35 bp):
TTTAATAAATGAACTAACTTTATTAAATGAACTAT
Found at i:2883108 original size:52 final size:52
Alignment explanation
Indices: 2883011--2883113 Score: 116
Period size: 52 Copynumber: 2.0 Consensus size: 52
2883001 TAAGAGATAG
* * * ** *
2883011 TTTAATAAATGAACTAGTTTTATTAATGAACTATTTTAATTAATGAACTAAC
1 TTTAATAAATGAACTAGATGTATGAATGAACTAGCTTAATAAATGAACTAAC
* * * *
2883063 TTTATTAAATGAACTAGATGTATGAATGAAGTAGCTTACTAAATGATCTAA
1 TTTAATAAATGAACTAGATGTATGAATGAACTAGCTTAATAAATGAACTAA
2883114 AGGCATAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.39
Consensus pattern (52 bp):
TTTAATAAATGAACTAGATGTATGAATGAACTAGCTTAATAAATGAACTAAC
Found at i:2896723 original size:33 final size:33
Alignment explanation
Indices: 2896686--2896820 Score: 234
Period size: 33 Copynumber: 4.1 Consensus size: 33
2896676 GCCTATGATG
2896686 AATTGTATTTGGAATTTGAGACCATGAATTCCA
1 AATTGTATTTGGAATTTGAGACCATGAATTCCA
2896719 AATTGTATTTGGAATTTGAGACCATGAATTCCA
1 AATTGTATTTGGAATTTGAGACCATGAATTCCA
2896752 AATTGTATTTGGAATTTGAGACCATGAATTCCA
1 AATTGTATTTGGAATTTGAGACCATGAATTCCA
* * * *
2896785 AATTATATTTGAAATTTAAGACCATGAAATCCA
1 AATTGTATTTGGAATTTGAGACCATGAATTCCA
2896818 AAT
1 AAT
2896821 ATAAGAAATT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 98 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (33 bp):
AATTGTATTTGGAATTTGAGACCATGAATTCCA
Found at i:2898203 original size:20 final size:20
Alignment explanation
Indices: 2898178--2898242 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
2898168 AAATATTATA
2898178 GATATTGTTCATGCAGTATC
1 GATATTGTTCATGCAGTATC
* *
2898198 GATATTG--CATGAACAATGTC
1 GATATTGTTCATG--CAGTATC
* *
2898218 GATATTATTCTTGCAGTATC
1 GATATTGTTCATGCAGTATC
2898238 GATAT
1 GATAT
2898243 CAAAGGTAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 4 0.11
20 28 0.80
22 3 0.09
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (20 bp):
GATATTGTTCATGCAGTATC
Found at i:2899117 original size:26 final size:26
Alignment explanation
Indices: 2899088--2899189 Score: 87
Period size: 26 Copynumber: 3.7 Consensus size: 26
2899078 TCTATACATA
2899088 CATACATTATACATTAATAAATAATT
1 CATACATTATACATTAATAAATAATT
*
2899114 CATACATTATACATTATACATATATGTCAATT
1 CATACATTATACA-T-TA-ATA-A-AT-AATT
* * * *
2899146 CATACATTATATATTAATTAATTATA
1 CATACATTATACATTAATAAATAATT
* *
2899172 CTTACATTATATATTAAT
1 CATACATTATACATTAAT
2899190 TATACATACA
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
26 32 0.51
27 2 0.03
28 3 0.05
29 5 0.08
30 3 0.05
31 2 0.03
32 16 0.25
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (26 bp):
CATACATTATACATTAATAAATAATT
Found at i:2899150 original size:18 final size:17
Alignment explanation
Indices: 2899110--2899158 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 17
2899100 ATTAATAAAT
2899110 AATTCATACAT-TATAC
1 AATTCATACATATATAC
*
2899126 -ATT-ATACATATATGTC
1 AATTCATACATATAT-AC
2899142 AATTCATACATTATATA
1 AATTCATACA-TATATA
2899159 TTAATTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
14 6 0.23
15 6 0.23
16 1 0.04
17 3 0.12
18 5 0.19
19 5 0.19
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (17 bp):
AATTCATACATATATAC
Found at i:2899164 original size:19 final size:18
Alignment explanation
Indices: 2899110--2899164 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 18
2899100 ATTAATAAAT
2899110 AATTCATACAT-TATA-C
1 AATTCATACATATATATC
*
2899126 -ATT-ATACATATATGTC
1 AATTCATACATATATATC
*
2899142 AATTCATACATTATATATT
1 AATTCATACA-TATATATC
2899161 AATT
1 AATT
2899165 AATTATACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 1 0.03
17 3 0.10
18 5 0.16
19 10 0.32
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTCATACATATATATC
Found at i:2899198 original size:26 final size:26
Alignment explanation
Indices: 2899148--2899240 Score: 82
Period size: 26 Copynumber: 3.5 Consensus size: 26
2899138 TGTCAATTCA
*
2899148 TACATTATATATTAATTAATTATACT
1 TACATTATATATTAATTAATCATACT
*
2899174 TACATTATATATTAATT-ATACATACA
1 TACATTATATATTAATTAAT-CATACT
* * *
2899200 TACTTTAAATA-TACATATCAATTCATACA
1 TACATTATATATTA-AT-T-AA-TCATACT
2899229 TACATTATATAT
1 TACATTATATAT
2899241 ACATATCAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
25 4 0.07
26 32 0.59
27 1 0.02
29 16 0.30
30 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (26 bp):
TACATTATATATTAATTAATCATACT
Found at i:2899228 original size:29 final size:29
Alignment explanation
Indices: 2899194--2899259 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
2899184 ATTAATTATA
*
2899194 CATACATACTTTAAATATACATATCAATT
1 CATACATACATTAAATATACATATCAATT
*
2899223 CATACATACATTATATATACATATCAATT
1 CATACATACATTAAATATACATATCAATT
2899252 CATACATA
1 CATACATA
2899260 TATCCAACAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (29 bp):
CATACATACATTAAATATACATATCAATT
Found at i:2899229 original size:14 final size:14
Alignment explanation
Indices: 2899210--2899260 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
2899200 TACTTTAAAT
2899210 ATACATATCAATTC
1 ATACATATCAATTC
2899224 ATACATA-CATTATAT-
1 ATACATATCA--AT-TC
2899239 ATACATATCAATTC
1 ATACATATCAATTC
2899253 ATACATAT
1 ATACATAT
2899261 ATCCAACAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
13 3 0.09
14 17 0.53
15 9 0.28
16 3 0.09
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (14 bp):
ATACATATCAATTC
Found at i:2899368 original size:2 final size:2
Alignment explanation
Indices: 2899361--2899424 Score: 119
Period size: 2 Copynumber: 32.0 Consensus size: 2
2899351 TCTTAAGTTA
2899361 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
2899403 AT AT AT AT AT AG AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
2899425 TATGAATTTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2902105 original size:20 final size:20
Alignment explanation
Indices: 2902080--2902120 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
2902070 TAAAAAAAAG
*
2902080 TGGTTCTTGTTTCTTTCTCA
1 TGGTTCTTGTTTCCTTCTCA
2902100 TGGTTCTTGTTTCCTTCTCA
1 TGGTTCTTGTTTCCTTCTCA
2902120 T
1 T
2902121 CATTGCCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.22, G:0.15, T:0.59
Consensus pattern (20 bp):
TGGTTCTTGTTTCCTTCTCA
Found at i:2905668 original size:198 final size:198
Alignment explanation
Indices: 2905330--2905725 Score: 776
Period size: 198 Copynumber: 2.0 Consensus size: 198
2905320 GCAATATTGT
2905330 AACAGCAAAGTTCATAACCAAACAGGATTACACCGGTTTCACCACAGATAATTGCGATTTTACAC
1 AACAGCAAAGTTCATAACCAAACAGGATTACACCGGTTTCACCACAGATAATTGCGATTTTACAC
2905395 GAAAAGAGCTCACTTACTTTCCTTCCAGAGCCTCAGGACAAAGAAGACCAAACCGGTTAATGAAC
66 GAAAAGAGCTCACTTACTTTCCTTCCAGAGCCTCAGGACAAAGAAGACCAAACCGGTTAATGAAC
2905460 TCAAAGAACGGTCTACGAGTTGGATATCCAGCCATACTGATTCTAATTGCCTCTAGAACACCCTG
131 TCAAAGAACGGTCTACGAGTTGGATATCCAGCCATACTGATTCTAATTGCCTCTAGAACACCCTG
2905525 CAA
196 CAA
2905528 AACAGCAAAGTTCATAACCAAACAGGATTACACCGGTTTCACCACAGATAATTGCGATTTTACAA
1 AACAGCAAAGTTCATAACCAAACAGGATTACACCGGTTTCACCACAGATAATTGCGATTTTAC-A
2905593 CG-AAAGAGCTCACTTACTTTCCTTCCAGAGCCTCAGGACAAAGAAGACCAAACCGGTTAATGAA
65 CGAAAAGAGCTCACTTACTTTCCTTCCAGAGCCTCAGGACAAAGAAGACCAAACCGGTTAATGAA
2905657 CTCAAAGAACGGTCTACGAGTTGGATATCCAGCCATACTGATTCTAATTGCCTCTAGAACACCCT
130 CTCAAAGAACGGTCTACGAGTTGGATATCCAGCCATACTGATTCTAATTGCCTCTAGAACACCCT
2905722 GCAA
195 GCAA
2905726 GAGCCAACTT
Statistics
Matches: 197, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
198 194 0.98
199 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (198 bp):
AACAGCAAAGTTCATAACCAAACAGGATTACACCGGTTTCACCACAGATAATTGCGATTTTACAC
GAAAAGAGCTCACTTACTTTCCTTCCAGAGCCTCAGGACAAAGAAGACCAAACCGGTTAATGAAC
TCAAAGAACGGTCTACGAGTTGGATATCCAGCCATACTGATTCTAATTGCCTCTAGAACACCCTG
CAA
Found at i:2911608 original size:25 final size:25
Alignment explanation
Indices: 2911575--2911669 Score: 78
Period size: 23 Copynumber: 4.1 Consensus size: 25
2911565 AAAGATATTA
2911575 ATATTAAATTATTAAGTAATAAATT
1 ATATTAAATTATTAAGTAATAAATT
* * *
2911600 ATATTAAA-TATAAAAT-TTAAATT
1 ATATTAAATTATTAAGTAATAAATT
* *
2911623 ATATTTACTT-TT-A--AAT-AATT
1 ATATTAAATTATTAAGTAATAAATT
* *
2911643 AAAATAAATTATTAAGTAATAAATT
1 ATATTAAATTATTAAGTAATAAATT
2911668 AT
1 AT
2911670 TTTTTAAGGA
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
20 10 0.20
21 3 0.06
22 2 0.04
23 13 0.25
24 10 0.20
25 13 0.25
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (25 bp):
ATATTAAATTATTAAGTAATAAATT
Found at i:2912096 original size:51 final size:51
Alignment explanation
Indices: 2912037--2912139 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
2912027 GAAAGTTTAA
2912037 TCACTCAACTATAAAGTAAATATTTTTTATTATAATAAACTTAATACTTAC
1 TCACTCAACTATAAAGTAAATATTTTTTATTATAATAAACTTAATACTTAC
*
2912088 TCACTCAACTATAAAGTGAATATTTTTTATTATAATAAACTTAATACTTAC
1 TCACTCAACTATAAAGTAAATATTTTTTATTATAATAAACTTAATACTTAC
2912139 T
1 T
2912140 TATATTATTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.42, C:0.14, G:0.03, T:0.42
Consensus pattern (51 bp):
TCACTCAACTATAAAGTAAATATTTTTTATTATAATAAACTTAATACTTAC
Found at i:2912458 original size:19 final size:18
Alignment explanation
Indices: 2912401--2912459 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
2912391 TTAGTTTTGT
2912401 ATAATATTATTTTAAATTAA
1 ATAATATTATTTT-AA-TAA
*
2912421 AT-ATA-TAATTTAA-AA
1 ATAATATTATTTTAATAA
2912436 ATAATATTATTTTAAGTAA
1 ATAATATTATTTTAA-TAA
2912455 ATAAT
1 ATAAT
2912460 TAATATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 9 0.27
18 5 0.15
19 10 0.30
20 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
ATAATATTATTTTAATAA
Found at i:2912463 original size:23 final size:23
Alignment explanation
Indices: 2912437--2912529 Score: 80
Period size: 23 Copynumber: 4.0 Consensus size: 23
2912427 AATTTAAAAA
* *
2912437 TAATATTATTTTAAGTAAATAAT
1 TAATATTATTTAAAATAAATAAT
**
2912460 TAATATTA-TTAAAATACGTAAT
1 TAATATTATTTAAAATAAATAAT
* * *
2912482 GAATATCATTTAAAATAAATAAA
1 TAATATTATTTAAAATAAATAAT
*
2912505 TAATATAATTTTAAAAATTAAATAA
1 TAATATTA-TTT-AAAA-TAAATAA
2912530 ATATTTTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
22 16 0.29
23 25 0.45
24 3 0.05
25 4 0.07
26 7 0.13
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (23 bp):
TAATATTATTTAAAATAAATAAT
Found at i:2912529 original size:22 final size:23
Alignment explanation
Indices: 2912434--2912552 Score: 75
Period size: 23 Copynumber: 5.2 Consensus size: 23
2912424 TATAATTTAA
* *
2912434 AAATAATATTATTTTAAGTAAAT
1 AAATAATATAATTTTAAATAAAT
* * * **
2912457 AATTAATATTA-TTAAAATACGT
1 AAATAATATAATTTTAAATAAAT
* *
2912479 -AATGAATATCATTTAAAATAAAT
1 AAAT-AATATAATTTTAAATAAAT
*
2912502 AAATAATATAATTTTAAA-AATT
1 AAATAATATAATTTTAAATAAAT
* *
2912524 AAATAA-ATATTTTTATAATATTAT
1 AAATAATATAATTTTA-AATA-AAT
2912548 AAATA
1 AAATA
2912553 TACTTTTCCA
Statistics
Matches: 75, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
21 10 0.13
22 24 0.32
23 32 0.43
24 9 0.12
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (23 bp):
AAATAATATAATTTTAAATAAAT
Found at i:2913263 original size:16 final size:15
Alignment explanation
Indices: 2913224--2913264 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
2913214 GCAAGATTAT
*
2913224 TAAAAATTAAAAAAA
1 TAAAAAATAAAAAAA
*
2913239 TAATAAATAATAAAAA
1 TAAAAAATAA-AAAAA
2913255 TAAAAAATAA
1 TAAAAAATAA
2913265 GGAATATCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAAAAATAAAAAAA
Found at i:2913270 original size:23 final size:25
Alignment explanation
Indices: 2913224--2913270 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
2913214 GCAAGATTAT
*
2913224 TAAAAATTAAAAAAATAATAAATAA
1 TAAAAATTAAAAAAATAAGAAATAA
*
2913249 TAAAAA-T-AAAAAATAAGGAATA
1 TAAAAATTAAAAAAATAAGAAATA
2913271 TCAACGATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 1 0.05
25 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (25 bp):
TAAAAATTAAAAAAATAAGAAATAA
Found at i:2914216 original size:51 final size:51
Alignment explanation
Indices: 2914154--2914267 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
2914144 ACCCTTTGCA
* * *
2914154 GTAAGGTGCGCCCCCTGCAACGCGCTATACGTTGATTTGGCACCACGTGGG
1 GTAAGGCGCGCCCCCTGCAACACGCTATACGTTGATTTGACACCACGTGGG
*
2914205 GTAAGGCGCGCCCCCTGCAACACGCTATACGTTGATTTGACATCACGTGGG
1 GTAAGGCGCGCCCCCTGCAACACGCTATACGTTGATTTGACACCACGTGGG
*
2914256 GTAAAGCGCGCC
1 GTAAGGCGCGCC
2914268 TTATGCTCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (51 bp):
GTAAGGCGCGCCCCCTGCAACACGCTATACGTTGATTTGACACCACGTGGG
Found at i:2918807 original size:3 final size:3
Alignment explanation
Indices: 2918799--2918826 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2918789 GTACCTACTT
2918799 AGG AGG AGG AGG AGG AGG AGG AGG AGG A
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG A
2918827 CGACGACGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:2923725 original size:78 final size:77
Alignment explanation
Indices: 2923643--2924025 Score: 312
Period size: 78 Copynumber: 5.0 Consensus size: 77
2923633 TAAAAAATAT
* *
2923643 GGTTGCGCCTAAAAATGTTATGGTTCGCTAATAAATATGTTACGATATGGAATGTTAAATATTTT
1 GGTTGCGCCTAAAAATGTTATGGTTCACTAATAAATAGGTTACGATATGGAATGTT-AATATTTT
2923708 TATTAATAAAATG
65 TATTAATAAAATG
* * * * * ** * * *
2923721 GGTTGCACAC-AAAAATATCATGGTTTACTAAGAAATACATTATGATCTGGAATGTTCATATTTT
1 GGTTGCGC-CTAAAAATGTTATGGTTCACTAATAAATAGGTTACGATATGGAATGTTAATATTTT
*
2923785 TATTAAAAAAAATG
65 TATT-AATAAAATG
* * * * * * *
2923799 GGTCGCGCCAAAAAATATCATGGTTCACTAATAAATAGGTTACGATCTGGAATGTTAAAACTTTT
1 GGTTGCGCCTAAAAATGTTATGGTTCACTAATAAATAGGTTACGATATGGAATGTTAATATTTTT
2923864 ATTAATAAAATG
66 ATTAATAAAATG
* ** ** * * *
2923876 GGTTGAGTGTCATTAATG-TAT-G-TGACTAAAAAATAGGTTGCGATAT-GAATTGTTAATATTT
1 GGTTGCGCCT-AAAAATGTTATGGTTCACTAATAAATAGGTTACGATATGGAA-TGTTAATATTT
*
2923937 TTATCAATAAAATG
64 TTATTAATAAAATG
* * * * * * * * *
2923951 GGTTGTGCATAAAAATGTTATGATTCACTAAGAAAGCAAGTTGCAATCTGGAATGTTAAT-TTTT
1 GGTTGCGCCTAAAAATGTTATGGTTCACTAATAAA-TAGGTTACGATATGGAATGTTAATATTTT
2924015 CTATT-ATAAAA
65 -TATTAATAAAA
2924026 AATTCAAAAG
Statistics
Matches: 242, Mismatches: 52, Indels: 23
0.76 0.16 0.07
Matches are distributed among these distances:
74 8 0.03
75 52 0.21
76 1 0.00
77 46 0.19
78 131 0.54
79 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (77 bp):
GGTTGCGCCTAAAAATGTTATGGTTCACTAATAAATAGGTTACGATATGGAATGTTAATATTTTT
ATTAATAAAATG
Found at i:2924212 original size:20 final size:20
Alignment explanation
Indices: 2924184--2924222 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2924174 TTTTCAAATT
*
2924184 CAAATGTATGGATACTTTTC
1 CAAAAGTATGGATACTTTTC
* *
2924204 CAAAAGTATTGTTACTTTT
1 CAAAAGTATGGATACTTTT
2924223 AAATTTGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (20 bp):
CAAAAGTATGGATACTTTTC
Found at i:2924606 original size:99 final size:99
Alignment explanation
Indices: 2924450--2924845 Score: 490
Period size: 98 Copynumber: 4.0 Consensus size: 99
2924440 GTAGGCATCG
* * ** *
2924450 CCTTATTTAATGTCAAATGTTTAAGTTATAAGTATGAAACCGTTTATATGGTGCAAAAGTAAGAC
1 CCTT-TTTAATGTCAACTGTTTAAATTATAAGTATGAAACCGTTTATATTATACAAAAGTAAGAC
* *
2924515 AAAACATGTTTCTCATGATAACGTAGTAGGTAACA
65 AAAACATGTTGCTCATGATAACGTACTAGGTAACA
* * * *
2924550 CCTTTTTTATGTCAACCGTTTAAGTTAAAAGTATGAAACCGTTTATATTATACAAAAGTAAGACA
1 CCTTTTTAATGTCAACTGTTTAAATTATAAGTATGAAACCGTTTATATTATACAAAAGTAAGACA
* * *
2924615 AAACATGTTGCTAATGATAACATACTAAGTAACA
66 AAACATGTTGCTCATGATAACGTACTAGGTAACA
** *
2924649 -CTTTTTAATGTCAACTGTTTAAATTATAAGTATGAAATTGTTTATATTATGCAAAAGTAAGACA
1 CCTTTTTAATGTCAACTGTTTAAATTATAAGTATGAAACCGTTTATATTATACAAAAGTAAGACA
*
2924713 AAACATGTTGCTCATGATAACGTACTAGGTAACGC
66 AAACATGTTGCTCATGATAACGTACTAGGTAAC-A
* * * *
2924748 CCTTTTTAAATGTTAACAT-TTTAAACTATAAGTATGAAACCGTTTATATTATGAGAAAAGTAAA
1 CCTTTTT-AATGTCAAC-TGTTTAAATTATAAGTATGAAACCGTTTATATTAT-ACAAAAGTAAG
* ** * *
2924812 ATAAAACATGTTTTTCATGATAACATAATAGGTA
63 ACAAAACATGTTGCTCATGATAACGTACTAGGTA
2924846 GCGTCTTTTT
Statistics
Matches: 256, Mismatches: 35, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
98 87 0.34
99 83 0.32
100 10 0.04
101 38 0.15
102 38 0.15
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (99 bp):
CCTTTTTAATGTCAACTGTTTAAATTATAAGTATGAAACCGTTTATATTATACAAAAGTAAGACA
AAACATGTTGCTCATGATAACGTACTAGGTAACA
Found at i:2925909 original size:263 final size:263
Alignment explanation
Indices: 2925435--2925910 Score: 602
Period size: 263 Copynumber: 1.8 Consensus size: 263
2925425 CGCAACCGAC
*
2925435 TTTCTTAGTGAACCATAACATACTTGAGAACAACCTATTTTATTAATAAAACATTAACGTTACAG
1 TTTCTTAGTGAACCATAACATACTTGAGAACAACCTATTTTATTAATAAAACATTAACATTACAG
** * * *
2925500 ATCGCAACATGTTTCTTAATGAACCATAATATAATTGGATGCAACTGTATTTCTTATATACATTC
66 ATCGCAACATACTTCTTAATAAACCATAACAT-ATTGGATGCAACCGTATTTCTTATATACATTC
* * * *
2925565 ATAATATTTTTAGCTTTTAACTTATTTTCTTATCTTTGGAAAATACAAGGCTCCATCAGCTTAAA
130 ATAATATTTTCAGCTTTTAACTTATTTTATTATCTGTGGAAAATACAAGGCTCCATCAACTTAAA
*
2925630 CTTTGATAATATTTTAGGCGCAACGCATTTTCTTATTAAAAATATTAAGATTCCAAATTGCAAAC
195 CTTTGATAACATTTTAGGCGCAACGCATTTTCTTATTAAAAATATTAAGATTCCAAATTGCAAAC
2925695 ATAT
260 ATAT
* * * * ** * *
2925699 TTTCTTAGTGAACCATGACTTTCTTGGGTGCAACCTATTTTATTAATACAAATATTAACATTATA
1 TTTCTTAGTGAACCATAACATACTTGAGAACAACCTATTTTATTAATA-AAACATTAACATTACA
* * * * *
2925764 TATCGCAACCTACTTCTTAGTAAACCA-AGACAT-TTGGGTGCAACCGTATTTCTTATATATATT
65 GATCGCAACATACTTCTTAATAAACCATA-ACATATTGGATGCAACCGTATTTCTTATATACATT
* * * * *
2925827 TATAACT-TTTTCAGTTTTTAACTTATTTTATTAT-TGTGAGAAAAT-CTAATGTTCTATCAACT
129 CATAA-TATTTTCAGCTTTTAACTTATTTTATTATCTGTG-GAAAATAC-AAGGCTCCATCAACT
2925889 TAAACTTTGATAACATTTTAGG
191 TAAACTTTGATAACATTTTAGG
2925911 TATAACGTAA
Statistics
Matches: 178, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
262 4 0.02
263 93 0.52
264 44 0.25
265 37 0.21
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (263 bp):
TTTCTTAGTGAACCATAACATACTTGAGAACAACCTATTTTATTAATAAAACATTAACATTACAG
ATCGCAACATACTTCTTAATAAACCATAACATATTGGATGCAACCGTATTTCTTATATACATTCA
TAATATTTTCAGCTTTTAACTTATTTTATTATCTGTGGAAAATACAAGGCTCCATCAACTTAAAC
TTTGATAACATTTTAGGCGCAACGCATTTTCTTATTAAAAATATTAAGATTCCAAATTGCAAACA
TAT
Found at i:2937677 original size:212 final size:211
Alignment explanation
Indices: 2937303--2937762 Score: 701
Period size: 212 Copynumber: 2.2 Consensus size: 211
2937293 ATCTAAAGGA
* * *
2937303 AATTTAGACGAAAACTTAGAGTCTAAAGGGTGAATCCATTGAGCTAATTTTGAGGCTAAACTTTT
1 AATTTAAACGAAAACTTAGAGACTAAAGGGTGAATCCATTGAGCTAAATTTGAGGCTAAACTTTT
*
2937368 ATTTAGTATAATTGGGGATCAAAGTCACAATTTTTAGATATGTAGAAACTAATTTGTAAATTTAG
66 ATTTAGTATAATTGAGGATCAAAGTCACAATTTTTAGATATGTAGAAACTAATTTGTAAATTTAG
*** *
2937433 GGAGTTGTAAAGGACTAAATTGATAATATTAAAGTTTGAAATCTAAATCTAAAGGAAATTATAAA
131 GGAGTTGTAAAGGACTAAATTGATAATATTAAAGTCCAAAATATAAATC-AAAGGAAATTATAAA
* *
2937498 AAATAAGGACTAAGTTG
195 AAATAAGAACAAAGTTG
* *
2937515 AATTTAAACGAAAACTTAGAGCCTAAAGGGTGAATCCATTGAGCTAAATTTGAGGCTAAATTTTT
1 AATTTAAACGAAAACTTAGAGACTAAAGGGTGAATCCATTGAGCTAAATTTGAGGCTAAACTTTT
2937580 ATTTAGTATAATTGAGGATCAAAGTCACAATTTTTAGATATGTAGAAACT-ATTATGTAAATTTA
66 ATTTAGTATAATTGAGGATCAAAGTCACAATTTTTAGATATGTAGAAACTAATT-TGTAAATTTA
* * *
2937644 GGGAGTTGTAAAGGACTAAATTGATAATATTAAAGTCCAAAATATATATCGAAGGAAATTATGAA
130 GGGAGTTGTAAAGGACTAAATTGATAATATTAAAGTCCAAAATATAAATCAAAGGAAATTATAAA
* *
2937709 AATTAAGAACAAATTTG
195 AAATAAGAACAAAGTTG
* *
2937726 AATTCAAAGGAAAACTT-G-GACTAAAGGGTGAAGTCCA
1 AATTTAAACGAAAACTTAGAGACTAAAGGGTGAA-TCCA
2937763 ATGGGATAAG
Statistics
Matches: 227, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
209 13 0.06
210 5 0.02
211 44 0.19
212 165 0.73
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (211 bp):
AATTTAAACGAAAACTTAGAGACTAAAGGGTGAATCCATTGAGCTAAATTTGAGGCTAAACTTTT
ATTTAGTATAATTGAGGATCAAAGTCACAATTTTTAGATATGTAGAAACTAATTTGTAAATTTAG
GGAGTTGTAAAGGACTAAATTGATAATATTAAAGTCCAAAATATAAATCAAAGGAAATTATAAAA
AATAAGAACAAAGTTG
Found at i:2939867 original size:151 final size:151
Alignment explanation
Indices: 2939593--2939898 Score: 603
Period size: 151 Copynumber: 2.0 Consensus size: 151
2939583 TTGAAGGTGG
2939593 AATTACAAAGAGGGCATTTCCTCTTCAAATCACTCCACTTGCGAATGCAATCTAAGCAGTAAGCG
1 AATTACAAAGAGGGCATTTCCTCTTCAAATCACTCCACTTGCGAATGCAATCTAAGCAGTAAGCG
2939658 TGAGAATAAATCGCCAGAACAGCTGTTCCACGAACGTCGATGGTTCTTAGATATATCGGGCATGT
66 TGAGAATAAATCGCCAGAACAGCTGTTCCACGAACGTCGATGGTTCTTAGATATATCGGGCATGT
*
2939723 TTTGTTGATGATTGCCAAAGA
131 TTTATTGATGATTGCCAAAGA
2939744 AATTACAAAGAGGGCATTTCCTCTTCAAATCACTCCACTTGCGAATGCAATCTAAGCAGTAAGCG
1 AATTACAAAGAGGGCATTTCCTCTTCAAATCACTCCACTTGCGAATGCAATCTAAGCAGTAAGCG
2939809 TGAGAATAAATCGCCAGAACAGCTGTTCCACGAACGTCGATGGTTCTTAGATATATCGGGCATGT
66 TGAGAATAAATCGCCAGAACAGCTGTTCCACGAACGTCGATGGTTCTTAGATATATCGGGCATGT
2939874 TTTATTGATGATTGCCAAAGA
131 TTTATTGATGATTGCCAAAGA
2939895 AATT
1 AATT
2939899 GATCTGTGTA
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 154 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (151 bp):
AATTACAAAGAGGGCATTTCCTCTTCAAATCACTCCACTTGCGAATGCAATCTAAGCAGTAAGCG
TGAGAATAAATCGCCAGAACAGCTGTTCCACGAACGTCGATGGTTCTTAGATATATCGGGCATGT
TTTATTGATGATTGCCAAAGA
Found at i:2939978 original size:3 final size:3
Alignment explanation
Indices: 2939970--2940080 Score: 222
Period size: 3 Copynumber: 37.0 Consensus size: 3
2939960 GGTGAAAAGA
2939970 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
2940018 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
2940066 AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG
2940081 GTTGACTGCC
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 108 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:2940237 original size:90 final size:90
Alignment explanation
Indices: 2940084--2940263 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
2940074 GAGGAGGGTT
2940084 GACTGCCATGTCAGTGAAAAAAAGGTTAACGTAGGATTAACTGTCATGTCGGTAAAAATTAACAG
1 GACTGCCATGTCAGTGAAAAAAAGGTTAACGTAGGATTAACTGTCATGTCGGTAAAAATTAACAG
2940149 AATGTAACGATAGGTACAAAAATAA
66 AATGTAACGATAGGTACAAAAATAA
2940174 GACTGCCATGTCAGTGAAAAAAAGGTTAACGTAGGATTAACTGTCATGTCGGTAAAAATTAACAG
1 GACTGCCATGTCAGTGAAAAAAAGGTTAACGTAGGATTAACTGTCATGTCGGTAAAAATTAACAG
*
2940239 AATGTAACGATAGGTATAAAAATAA
66 AATGTAACGATAGGTACAAAAATAA
2940264 AAACGAACTA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (90 bp):
GACTGCCATGTCAGTGAAAAAAAGGTTAACGTAGGATTAACTGTCATGTCGGTAAAAATTAACAG
AATGTAACGATAGGTACAAAAATAA
Found at i:2941067 original size:56 final size:56
Alignment explanation
Indices: 2940902--2941068 Score: 210
Period size: 56 Copynumber: 3.0 Consensus size: 56
2940892 AAAAATATTT
* *
2940902 GCTCCGAAATCGAGTATATCTATCAGTTGTTACCATTAATAAGCATAAAAAT-AGG
1 GCTCCGAAATCGAGTATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAGG
* * * * *
2940957 GGTCTCAAAATCGAGTATATCTATCAGTTGTTGTCATTAAGAAGTATAAAAATAAGG
1 GCTC-CGAAATCGAGTATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAGG
* * * * *
2941014 GCTCCGAAATCGAATGTATCTATCAATTATTGCCATTAAAAAACATAAAAATAAG
1 GCTCCGAAATCGAGTATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAG
2941069 AGCCTCAAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
55 3 0.03
56 85 0.90
57 6 0.06
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (56 bp):
GCTCCGAAATCGAGTATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAGG
Found at i:2941090 original size:56 final size:55
Alignment explanation
Indices: 2940908--2941091 Score: 197
Period size: 56 Copynumber: 3.3 Consensus size: 55
2940898 ATTTGCTCCG
* * * * *
2940908 AAATCGAGTATATCTATCAGTTGTTACCATTAATAAGCATAAAAATAGGGGTCTCA
1 AAATCGAATATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATA-AGGCCTCA
* * * * * *
2940964 AAATCGAGTATATCTATCAGTTGTTGTCATTAAGAAGTATAAAAATAAGGGCTCCG
1 AAATCGAATATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAGGCCT-CA
* * * *
2941020 AAATCGAATGTATCTATCAATTATTGCCATTAAAAAACATAAAAATAAGAGCCTCA
1 AAATCGAATATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAG-GCCTCA
*
2941076 AAATTGAATATATCTA
1 AAATCGAATATATCTA
2941092 AATAATAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
55 4 0.04
56 100 0.93
57 3 0.03
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (55 bp):
AAATCGAATATATCTATCAGTTGTTGCCATTAAAAAGCATAAAAATAAGGCCTCA
Found at i:2942181 original size:13 final size:14
Alignment explanation
Indices: 2942126--2942174 Score: 89
Period size: 14 Copynumber: 3.5 Consensus size: 14
2942116 ATGTTGAGCA
*
2942126 TGATTACATTTTGG
1 TGATTACGTTTTGG
2942140 TGATTACGTTTTGG
1 TGATTACGTTTTGG
2942154 TGATTACGTTTTGG
1 TGATTACGTTTTGG
2942168 TGATTAC
1 TGATTAC
2942175 CTTTGGTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.49
Consensus pattern (14 bp):
TGATTACGTTTTGG
Found at i:2943466 original size:15 final size:15
Alignment explanation
Indices: 2943442--2943492 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
2943432 ATATTTAGTT
*
2943442 GGGCGGGCGGATGTG
1 GGGCGGGCGGATGCG
*
2943457 GGGCGTGCGGATGCG
1 GGGCGGGCGGATGCG
*
2943472 GGGCGGGTGGATGCG
1 GGGCGGGCGGATGCG
*
2943487 GTGCGG
1 GGGCGG
2943493 ATGCGGGGCG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.06, C:0.16, G:0.65, T:0.14
Consensus pattern (15 bp):
GGGCGGGCGGATGCG
Found at i:2953936 original size:27 final size:27
Alignment explanation
Indices: 2953845--2953925 Score: 153
Period size: 27 Copynumber: 3.0 Consensus size: 27
2953835 TTTATGTGTG
*
2953845 AAAACTCCTTCTCTCTTGTTCCCCATC
1 AAAACTCCTTTTCTCTTGTTCCCCATC
2953872 AAAACTCCTTTTCTCTTGTTCCCCATC
1 AAAACTCCTTTTCTCTTGTTCCCCATC
2953899 AAAACTCCTTTTCTCTTGTTCCCCATC
1 AAAACTCCTTTTCTCTTGTTCCCCATC
2953926 TCTTAGTCTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.19, C:0.38, G:0.04, T:0.40
Consensus pattern (27 bp):
AAAACTCCTTTTCTCTTGTTCCCCATC
Found at i:2956398 original size:19 final size:19
Alignment explanation
Indices: 2956374--2956422 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
2956364 ATAACAATAT
2956374 AACAGGTAAAAAATGACAA
1 AACAGGTAAAAAATGACAA
* * *
2956393 AACAGGTCTATAAATGATAA
1 AACAGGT-AAAAAATGACAA
2956413 AACAGGTAAA
1 AACAGGTAAA
2956423 GCGCTACCGG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.57, C:0.10, G:0.16, T:0.16
Consensus pattern (19 bp):
AACAGGTAAAAAATGACAA
Found at i:2956610 original size:223 final size:224
Alignment explanation
Indices: 2956120--2956681 Score: 923
Period size: 223 Copynumber: 2.5 Consensus size: 224
2956110 CTTATCGGTT
** * *
2956120 TTTATAAAAAAATATTGATCCATAACAATATAACAAGTAAAAAAATGAC-AAACCGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACAGGTCTATAAA
* *
2956184 TGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCTA
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGA
*
2956249 TCCATAACAATATAACAGGTAAAAAAATGACAAAACATGTCTATAAATGACAAAACAGGTAAAGA
131 TCCATAACAATATAACAGGTAAAAAAATGACAAAACAGGTCTATAAATGACAAAACAGGTAAAGA
*
2956314 GCTACCGGATATATTGAAAGTGTCGATAC
196 GCTACCAGATATATTGAAAGTGTCGATAC
*
2956343 TTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAATGACAAAACAGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACAGGTCTATAAA
*
2956407 TGATAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGA
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGA
* * *
2956472 TCCATAATAATATAACAGGT-AAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGC
131 TCCATAACAATATAACAGGTAAAAAAATGACAAAACAGGTCTATAAATGACAAAACAGGTAAAGA
* * *
2956536 GCTACTAGATATGTTGATAGTGTCGATAC
196 GCTACCAGATATATTGAAAGTGTCGATAC
* *
2956565 TTTATAAAAATGTATCGATCCATAACAATAAAACAAGTAAAAAAATGACAAAACTGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACAGGTCTATAAA
* *
2956630 TGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTAT
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAT
2956682 TATAAGTATC
Statistics
Matches: 315, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
222 112 0.36
223 203 0.64
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (224 bp):
TTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACAGGTCTATAAA
TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGA
TCCATAACAATATAACAGGTAAAAAAATGACAAAACAGGTCTATAAATGACAAAACAGGTAAAGA
GCTACCAGATATATTGAAAGTGTCGATAC
Found at i:2956691 original size:111 final size:112
Alignment explanation
Indices: 2956120--2956681 Score: 914
Period size: 111 Copynumber: 5.0 Consensus size: 112
2956110 CTTATCGGTT
** * *
2956120 TTTATAAAAAAATATTGATCCATAACAATATAACAAGTAAAAAAATGAC-AAACCGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
*
2956184 TGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATAC
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
* **
2956231 TTTATAAAAATGTATCTATCCATAACAATATAACAGGTAAAAAAATGACAAAACATGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
*
2956296 TGACAAAACAGGTAAAGAGCTACCGGATATATTGAAAGTGTCGATAC
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
*
2956343 TTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAATGACAAAACAGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
*
2956407 TGATAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
*
2956454 TTTATAAAAATGTATCGATCCATAATAATATAACAGGT-AAAAAATGACAAAACCGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
** * *
2956518 TGACAAAACAGGTAAAGCGCTACTAGATATGTTGATAGTGTCGATAC
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
* * *
2956565 TTTATAAAAATGTATCGATCCATAACAATAAAACAAGTAAAAAAATGACAAAACTGGTCTATAAA
1 TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
* *
2956630 TGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATAC
66 TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
2956677 TTTAT
1 TTTAT
2956682 TATAAGTATC
Statistics
Matches: 423, Mismatches: 26, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
111 253 0.60
112 170 0.40
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (112 bp):
TTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAA
TGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAC
Found at i:2956861 original size:182 final size:182
Alignment explanation
Indices: 2956554--2957007 Score: 703
Period size: 182 Copynumber: 2.5 Consensus size: 182
2956544 ATATGTTGAT
* * *
2956554 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAAGTAAAAAAATGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
* ** * * * *
2956619 TGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTATTA
66 CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTATCAATACTTTATTA
* * *
2956684 TAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAA
131 TAAATATCAACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
2956736 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
2956801 CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATAT-TATGATAGTATCAATACTTTATT
66 CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGT-TGATAGTATCAATACTTTATT
* * *
2956865 ATAAATATCGACACTTTTTGAATTTAAAAGAAAAGAAGTTATAGCGCCCATAA
130 ATAAATATCAACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
* * * *
2956918 AGTGTCGGTACTTTATAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGATAAAAT
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
*
2956983 CGATCTCGAAATGACAAAACCGGTA
66 CGGTCTCGAAATGACAAAACCGGTA
2957008 GTAAAAAATT
Statistics
Matches: 250, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
181 1 0.00
182 249 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAGTATCAATACTTTATTA
TAAATATCAACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
Found at i:2957657 original size:23 final size:23
Alignment explanation
Indices: 2957628--2957675 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
2957618 AAATAGGTCA
*
2957628 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTAATACATT
*
2957651 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACCTAATACATT
2957674 AT
1 AT
2957676 TGTACTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATACATT
Found at i:2968789 original size:29 final size:29
Alignment explanation
Indices: 2968755--2968812 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
2968745 AAGAAGATAT
2968755 TGAGAATGAGTCTCACAACTTGAAGTGTC
1 TGAGAATGAGTCTCACAACTTGAAGTGTC
2968784 TGAGAATGAGTCTCACAACTTGAAGTGTC
1 TGAGAATGAGTCTCACAACTTGAAGTGTC
2968813 AGGGGAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (29 bp):
TGAGAATGAGTCTCACAACTTGAAGTGTC
Found at i:2969814 original size:42 final size:42
Alignment explanation
Indices: 2969755--2969836 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
2969745 TCTCACTTAG
* *
2969755 TAAATCCTTCGGGCCATCAATAATTCTTTCGAGAATGATGCT
1 TAAATCCTTCAGGCCATCAATAAGTCTTTCGAGAATGATGCT
* *
2969797 TAAATCCTTCAGGCCATCATTAAGTCTTTCGAGCATGATG
1 TAAATCCTTCAGGCCATCAATAAGTCTTTCGAGAATGATG
2969837 ATTTTGGGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (42 bp):
TAAATCCTTCAGGCCATCAATAAGTCTTTCGAGAATGATGCT
Found at i:2969982 original size:80 final size:80
Alignment explanation
Indices: 2969849--2970015 Score: 280
Period size: 80 Copynumber: 2.1 Consensus size: 80
2969839 TTTGGGAAAA
** * *
2969849 TTGTAAGCCTTCACCGAAGAGTAGTGAATCAAACCCATCAGTAAGTCTTTCGAGCATGATGATTA
1 TTGTAAGCCTTCACCGAAGAGTAGTGAAGAAAACCCATCAATAAGTCTTTCGAGCATGATGATGA
2969914 AATCCTTCGGGTAAT
66 AATCCTTCGGGTAAT
*
2969929 TTGTAAGCCTTCACCGAAGAGTAGTGAAGAAAATCCATCAATAAGTCTTTCGAGCATGATGATGA
1 TTGTAAGCCTTCACCGAAGAGTAGTGAAGAAAACCCATCAATAAGTCTTTCGAGCATGATGATGA
*
2969994 AATCCTTCGGGTCAT
66 AATCCTTCGGGTAAT
2970009 TTGTAAG
1 TTGTAAG
2970016 TCTTTCGAGC
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (80 bp):
TTGTAAGCCTTCACCGAAGAGTAGTGAAGAAAACCCATCAATAAGTCTTTCGAGCATGATGATGA
AATCCTTCGGGTAAT
Found at i:2970032 original size:42 final size:40
Alignment explanation
Indices: 2969970--2970055 Score: 118
Period size: 42 Copynumber: 2.1 Consensus size: 40
2969960 AATCCATCAA
* *
2969970 TAAGTCTTTCGAGCATGATGATGAAATCCTTCGGGTCATTT
1 TAAGTCTTTCGAGCAAGATGAT-AAATCCTTCGGGCCATTT
* *
2970011 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTTGGGCCATTT
1 -TAAGTCTTTCGAGCAAGATGATAAATCCTTCGGGCCATTT
2970052 TAAG
1 TAAG
2970056 CATTCTCGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 4 0.10
41 15 0.38
42 21 0.52
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (40 bp):
TAAGTCTTTCGAGCAAGATGATAAATCCTTCGGGCCATTT
Found at i:2970538 original size:53 final size:53
Alignment explanation
Indices: 2970426--2970544 Score: 188
Period size: 53 Copynumber: 2.2 Consensus size: 53
2970416 AGAATTACAC
*
2970426 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCATAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGG
*
2970479 CAGAAGATAGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCACT-GG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCA-TAGG
2970532 TC-GAAGATTGTTC
1 -CAGAAGATTGTTC
2970545 AAAGAAGAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
53 59 0.97
54 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGG
Found at i:2974917 original size:54 final size:54
Alignment explanation
Indices: 2974830--2975067 Score: 275
Period size: 54 Copynumber: 4.4 Consensus size: 54
2974820 GTTGCATTTT
* * *
2974830 CGTATCGACACTATGTGTGTAACC--CATGAAATTCATAATAAGTTTATGAATGAC
1 CGTATCGACACTATGTGTGCAACCTACA-G-AATTCATAATGAGTTAATGAATGAC
*
2974884 CGTATCGACACTATGTGTGCAACCTACATAATTCATAATGAGTTAATGAATGAC
1 CGTATCGACACTATGTGTGCAACCTACAGAATTCATAATGAGTTAATGAATGAC
* ** * * * *
2974938 CATATCGGTACTATGTGTGCAGCCCACGGAATTTATAATGAGTTAATGAATGAC
1 CGTATCGACACTATGTGTGCAACCTACAGAATTCATAATGAGTTAATGAATGAC
* * * ** *
2974992 TGTATCGACACTATGTGTACAA-ATCACAGAATTCATAATGAGTTTGTGAATGAT
1 CGTATCGACACTATGTGTGCAACCT-ACAGAATTCATAATGAGTTAATGAATGAC
2975046 CGTATCGACACTATGTGTGCAA
1 CGTATCGACACTATGTGTGCAA
2975068 AAACATTATG
Statistics
Matches: 154, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
54 152 0.99
56 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (54 bp):
CGTATCGACACTATGTGTGCAACCTACAGAATTCATAATGAGTTAATGAATGAC
Found at i:2975025 original size:108 final size:108
Alignment explanation
Indices: 2974832--2975067 Score: 303
Period size: 108 Copynumber: 2.2 Consensus size: 108
2974822 TGCATTTTCG
* * *
2974832 TATCGACACTATGTGTGTAACCCATGAAATTCATAATAAGTTTATGAATGACCGTATCGACACTA
1 TATCGACACTATGTGTGCAACCCACGAAATTCATAATAAGTTAATGAATGACCGTATCGACACTA
* *
2974897 TGTGTGCAACCTACATAATTCATAATGAGTTAATGAATGACCA
66 TGTGTACAACCTACAGAATTCATAATGAGTTAATGAATGACCA
** * * * * *
2974940 TATCGGTACTATGTGTGCAGCCCACGGAATTTATAATGAGTTAATGAATGACTGTATCGACACTA
1 TATCGACACTATGTGTGCAACCCACGAAATTCATAATAAGTTAATGAATGACCGTATCGACACTA
* ** * *
2975005 TGTGTACAA-ATCACAGAATTCATAATGAGTTTGTGAATGATCG
66 TGTGTACAACCT-ACAGAATTCATAATGAGTTAATGAATGACCA
2975048 TATCGACACTATGTGTGCAA
1 TATCGACACTATGTGTGCAA
2975068 AAACATTATG
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
107 1 0.01
108 106 0.99
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (108 bp):
TATCGACACTATGTGTGCAACCCACGAAATTCATAATAAGTTAATGAATGACCGTATCGACACTA
TGTGTACAACCTACAGAATTCATAATGAGTTAATGAATGACCA
Found at i:2992189 original size:15 final size:15
Alignment explanation
Indices: 2992169--2992198 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2992159 TATCACAATC
2992169 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
2992184 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
2992199 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:2994442 original size:27 final size:27
Alignment explanation
Indices: 2994404--2994457 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
2994394 TACGCTAGAT
2994404 TTCAAAATTGGACCAAAGCATTGGTCA
1 TTCAAAATTGGACCAAAGCATTGGTCA
*
2994431 TTCAGAATTGGACCAAAGCATTGGTCA
1 TTCAAAATTGGACCAAAGCATTGGTCA
2994458 ATGGCTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TTCAAAATTGGACCAAAGCATTGGTCA
Found at i:2994787 original size:5 final size:5
Alignment explanation
Indices: 2994779--2994833 Score: 83
Period size: 5 Copynumber: 10.8 Consensus size: 5
2994769 GCAATGCAAA
* *
2994779 AAAAC AAAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AGAAC AGAAC
1 AAAAC -AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC
2994830 AAAA
1 AAAA
2994834 TATAACAATC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 42 0.89
6 5 0.11
ACGTcount: A:0.78, C:0.18, G:0.04, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:3003499 original size:8 final size:8
Alignment explanation
Indices: 3003486--3003540 Score: 58
Period size: 8 Copynumber: 6.5 Consensus size: 8
3003476 CCATAGACCC
3003486 GACCCGTT
1 GACCCGTT
3003494 GACCCGTT
1 GACCCGTT
3003502 GACCCGTT
1 GACCCGTT
*
3003510 GA-TCGTT
1 GACCCGTT
3003517 GACCGGCGTT
1 GACC--CGTT
3003527 GACCACTGTT
1 GACC-C-GTT
3003537 GACC
1 GACC
3003541 AAAACTTTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.15
8 18 0.45
9 1 0.03
10 15 0.38
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25
Consensus pattern (8 bp):
GACCCGTT
Found at i:3003774 original size:24 final size:24
Alignment explanation
Indices: 3003742--3003791 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
3003732 GTCATATTTT
3003742 ATGCTTTTGACGTCCTGAATCCGA
1 ATGCTTTTGACGTCCTGAATCCGA
3003766 ATGCTTTTGACGTCCTGAATCCGA
1 ATGCTTTTGACGTCCTGAATCCGA
3003790 AT
1 AT
3003792 CCGAAGTCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (24 bp):
ATGCTTTTGACGTCCTGAATCCGA
Found at i:3006077 original size:24 final size:24
Alignment explanation
Indices: 3006050--3006188 Score: 181
Period size: 24 Copynumber: 5.8 Consensus size: 24
3006040 TTCGATTTGA
**
3006050 ATTCTGACCTGATACTTGACATGG
1 ATTCTGATATGATACTTGACATGG
*
3006074 ATTCTGATATGATA-TCTGCCATGG
1 ATTCTGATATGATACT-TGACATGG
*
3006098 ATTCTGATATGATATTTGACATGG
1 ATTCTGATATGATACTTGACATGG
* *
3006122 ATTCTGATATGATACTTAACTTGG
1 ATTCTGATATGATACTTGACATGG
* *
3006146 ATTCTGATACGATACTTGACCTGG
1 ATTCTGATATGATACTTGACATGG
*
3006170 ATTTTGATATGATACTTGA
1 ATTCTGATATGATACTTGA
3006189 TATGAATTAT
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
23 1 0.01
24 99 0.98
25 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.39
Consensus pattern (24 bp):
ATTCTGATATGATACTTGACATGG
Found at i:3006103 original size:12 final size:12
Alignment explanation
Indices: 3006066--3006128 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
3006056 ACCTGATACT
3006066 TGACATGGATTC
1 TGACATGGATTC
*
3006078 TGATAT-GATATC
1 TGACATGGAT-TC
*
3006090 TGCCATGGATTC
1 TGACATGGATTC
* *
3006102 TGATAT-GATATT
1 TGACATGGAT-TC
3006114 TGACATGGATTC
1 TGACATGGATTC
3006126 TGA
1 TGA
3006129 TATGATACTT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
11 6 0.15
12 27 0.69
13 6 0.15
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (12 bp):
TGACATGGATTC
Found at i:3006369 original size:43 final size:43
Alignment explanation
Indices: 3006308--3006402 Score: 174
Period size: 43 Copynumber: 2.2 Consensus size: 43
3006298 AGGCCTTACT
3006308 TGGTGTGTTGGTGGGTGTATGGTTCTAGGG-AACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTCT-GGGAAACCTACACATTA
3006351 TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA
3006394 TGGTGTGTT
1 TGGTGTGTT
3006403 CGGTTGGAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 3 0.06
43 48 0.94
ACGTcount: A:0.17, C:0.11, G:0.36, T:0.37
Consensus pattern (43 bp):
TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA
Found at i:3007963 original size:72 final size:74
Alignment explanation
Indices: 3007855--3007993 Score: 201
Period size: 73 Copynumber: 1.9 Consensus size: 74
3007845 TACCTAATTG
* * * * *
3007855 ATATGATGTTTCTAAATGACTTTTTAAATAGGCCAAGTTTGA-TTTTCAAAGGTTTTTTGACGAT
1 ATATGATGTTTCTAAATGAATTTTCAAAGAAGCCAAGTTTGATTTTTCAAAGGTTTCTTGACGAT
3007919 TACCTACCA
66 TACCTACCA
* *
3007928 ATATGATGTTTC-AAATGAATTTTCAAAGAAGCCAAGTTTGATTTTTTAAAGGTTTCTTGATGAT
1 ATATGATGTTTCTAAATGAATTTTCAAAGAAGCCAAGTTTGATTTTTCAAAGGTTTCTTGACGAT
3007992 TA
66 TA
3007994 AGTCTCCAGG
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 25 0.43
73 33 0.57
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (74 bp):
ATATGATGTTTCTAAATGAATTTTCAAAGAAGCCAAGTTTGATTTTTCAAAGGTTTCTTGACGAT
TACCTACCA
Found at i:3008249 original size:42 final size:41
Alignment explanation
Indices: 3008186--3008270 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
3008176 AGTCCTCTGA
* *
3008186 GTCATTAGTAAGTCTTCCGAGCATGATGATTAAATCCTTCAG
1 GTCATTAGTAAGTATTCCGAGCAAGATGA-TAAATCCTTCAG
* * * *
3008228 GTCATTGGTAAGTATTTCGAGCAAGATTATAAGTCCTTCAG
1 GTCATTAGTAAGTATTCCGAGCAAGATGATAAATCCTTCAG
3008269 GT
1 GT
3008271 TATCCATAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 13 0.35
42 24 0.65
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (41 bp):
GTCATTAGTAAGTATTCCGAGCAAGATGATAAATCCTTCAG
Found at i:3008802 original size:44 final size:42
Alignment explanation
Indices: 3008694--3008899 Score: 166
Period size: 43 Copynumber: 4.8 Consensus size: 42
3008684 TTGGCCCATC
* * * * *
3008694 CATCACATTAA-GAGTTAGATCAATATCAACATTTCGATCGATT
1 CATCACA-TAAGGAGTTGGATCAACATTATCATTTCGCT-GATT
* * * * * *
3008737 C-TACAGATAATGAGTTGGATCAGCATCAACATTTCACTAGATTT
1 CAT-CACATAAGGAGTTGGATCAACATTATCATTTCGCT-GA-TT
* *
3008781 CATCACATAAGGAGTTGGATCAACATTATCATTTCGCTCATC
1 CATCACATAAGGAGTTGGATCAACATTATCATTTCGCTGATT
* *
3008823 CATTACATCAGGAGTTGGATCAACATTATCACTTT-GCTTGATT
1 CATCACATAAGGAGTTGGATCAACATTATCA-TTTCGC-TGATT
* * *
3008866 CATCACATAAGGAGTTTGATTAACATTACCATTT
1 CATCACATAAGGAGTTGGATCAACATTATCATTT
3008900 GGTTCGTTTC
Statistics
Matches: 133, Mismatches: 24, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
42 39 0.29
43 61 0.46
44 32 0.24
45 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (42 bp):
CATCACATAAGGAGTTGGATCAACATTATCATTTCGCTGATT
Found at i:3008846 original size:42 final size:42
Alignment explanation
Indices: 3008781--3008900 Score: 152
Period size: 42 Copynumber: 2.8 Consensus size: 42
3008771 CACTAGATTT
3008781 CATCACATAAGGAGTTGGATCAACATTATCATTTCGC-TCATC
1 CATCACATAAGGAGTTGGATCAACATTATCATTT-GCTTCATC
* * * *
3008823 CATTACATCAGGAGTTGGATCAACATTATCACTTTGCTTGATT
1 CATCACATAAGGAGTTGGATCAACATTATCA-TTTGCTTCATC
* * *
3008866 CATCACATAAGGAGTTTGATTAACATTACCATTTG
1 CATCACATAAGGAGTTGGATCAACATTATCATTTG
3008901 GTTCGTTTCC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 35 0.52
43 32 0.48
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (42 bp):
CATCACATAAGGAGTTGGATCAACATTATCATTTGCTTCATC
Found at i:3014475 original size:17 final size:17
Alignment explanation
Indices: 3014455--3014487 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3014445 AAACTTTTTT
3014455 AAGA-AAAATCATTTTAA
1 AAGATAAAAT-ATTTTAA
3014472 AAGATAAAATATTTTA
1 AAGATAAAATATTTTA
3014488 CATTTAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (17 bp):
AAGATAAAATATTTTAA
Found at i:3015000 original size:11 final size:10
Alignment explanation
Indices: 3014977--3015015 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
3014967 ATCTTATTCC
*
3014977 CTTCTTTTCT
1 CTTCATTTCT
3014987 CTTCATTTCTT
1 CTTCATTTC-T
*
3014998 CTTCCTTTCT
1 CTTCATTTCT
3015008 CTTCATTT
1 CTTCATTT
3015016 ATTCCCTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (10 bp):
CTTCATTTCT
Found at i:3015535 original size:21 final size:21
Alignment explanation
Indices: 3015477--3015537 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
3015467 GTATTAATAA
3015477 TTGACCCTAGTGTATCGATAC
1 TTGACCCTAGTGTATCGATAC
* * *
3015498 -T---CATAGGGGTATTGATAC
1 TTGACCCTA-GTGTATCGATAC
3015516 TTGACCCTAGTGTATCGATAC
1 TTGACCCTAGTGTATCGATAC
3015537 T
1 T
3015538 ACCCACCTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 1 0.03
20 1 0.03
21 11 0.38
22 3 0.10
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (21 bp):
TTGACCCTAGTGTATCGATAC
Found at i:3017696 original size:16 final size:16
Alignment explanation
Indices: 3017675--3017707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3017665 TAATACTCAA
3017675 AATAT-AATATGATTAT
1 AATATAAATAT-ATTAT
3017691 AATATAAATATATTAT
1 AATATAAATATATTAT
3017707 A
1 A
3017708 CTTTAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AATATAAATATATTAT
Found at i:3019668 original size:33 final size:33
Alignment explanation
Indices: 3019629--3019697 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
3019619 ATGCTAGCAG
* *
3019629 TATATGCATGATTCATAAATCCAAGGCATGGCA
1 TATATGCATGATTCATAAATCCAAAGCATGACA
3019662 TATATGCATGATTCATAAATCCAAAGCATGACA
1 TATATGCATGATTCATAAATCCAAAGCATGACA
3019695 TAT
1 TAT
3019698 TTACGAGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (33 bp):
TATATGCATGATTCATAAATCCAAAGCATGACA
Found at i:3024893 original size:2 final size:2
Alignment explanation
Indices: 3024886--3024938 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
3024876 AAAAGTTCAT
3024886 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3024928 TA TA TA TA TA T
1 TA TA TA TA TA T
3024939 CATAAAATCG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3025396 original size:33 final size:33
Alignment explanation
Indices: 3025349--3025414 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3025339 TACGGTAAGA
* *
3025349 ACTTACCCTAAGCACAAAGTAGACGAGCTTGCG
1 ACTTACCCTAAGCACAAAGCAGACGAGCCTGCG
* * *
3025382 ACTTACTCTGAGCACAAAGCAGAGGAGCCTGCG
1 ACTTACCCTAAGCACAAAGCAGACGAGCCTGCG
3025415 GTAGTAAGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.27, G:0.24, T:0.17
Consensus pattern (33 bp):
ACTTACCCTAAGCACAAAGCAGACGAGCCTGCG
Found at i:3025471 original size:39 final size:39
Alignment explanation
Indices: 3025381--3025585 Score: 241
Period size: 39 Copynumber: 5.2 Consensus size: 39
3025371 ACGAGCTTGC
*
3025381 GACTTACTCTGAGCACAAAGCAGAGGAGCCTGCGGTAGTAAG
1 GACTTACCCTGAGCACAAAGCAGAGGAGCCTGC---AGTAAG
*
3025423 GACTTACCCTGAGCACAAAGCAGAGGAGCTTGCAGTAAG
1 GACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAGTAAG
* * *
3025462 GACTTACCCTGAGCACCAAGCAGAGGAGCTTGCGGTAAG
1 GACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAGTAAG
* **
3025501 GACTTACCCTGAGCACAAAGTAGAGGAGCCTAAAGTAAG
1 GACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAGTAAG
* * * * *
3025540 GACTTACTCTAAGCACAAAG-AGGAGGAGTCAGCGGTAAG
1 GACTTACCCTGAGCACAAAGCA-GAGGAGCCTGCAGTAAG
*
3025579 GTCTTAC
1 GACTTAC
3025586 AAGTCATAGA
Statistics
Matches: 144, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 112 0.78
42 31 0.22
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.17
Consensus pattern (39 bp):
GACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAGTAAG
Found at i:3034343 original size:2 final size:2
Alignment explanation
Indices: 3034336--3034466 Score: 253
Period size: 2 Copynumber: 65.5 Consensus size: 2
3034326 CATACGATAA
3034336 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
3034378 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
3034420 AC AC AC AC AC AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
3034462 AC AC A
1 AC AC A
3034467 TATATATGTT
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 127 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:3034869 original size:39 final size:39
Alignment explanation
Indices: 3034815--3034906 Score: 103
Period size: 39 Copynumber: 2.4 Consensus size: 39
3034805 TAAGGACCCG
* * * *
3034815 CGGTAAAGAATTACCCTAAGCACAAAGCAGAGGAGCCTA
1 CGGTAAGGACTTACCCTAAGCACAAAGCAAAAGAGCCTA
* * * *
3034854 CGGTAAGGACTTACCCTGAGCACAAATCAAAAGAGCTTG
1 CGGTAAGGACTTACCCTAAGCACAAAGCAAAAGAGCCTA
*
3034893 CGGTAAGGTCTTAC
1 CGGTAAGGACTTAC
3034907 AAGTCATAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (39 bp):
CGGTAAGGACTTACCCTAAGCACAAAGCAAAAGAGCCTA
Found at i:3038861 original size:24 final size:24
Alignment explanation
Indices: 3038831--3038902 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
3038821 GTAAACAGAG
*
3038831 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* * *
3038855 ATATCAGATATTAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTC
* * *
3038879 AGATAAG-AATCAGAACATAATTC
1 ATATCAGAAATCAGAACAGAATTC
3038902 A
1 A
3038903 GGTAACGCAT
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 13 0.34
24 25 0.66
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.22
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:3041377 original size:7 final size:7
Alignment explanation
Indices: 3041365--3041399 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
3041355 TGGTCAACGC
3041365 CGGTCAA
1 CGGTCAA
3041372 CGGTCAA
1 CGGTCAA
3041379 CGGGTCAA
1 C-GGTCAA
3041387 CGGTCAA
1 CGGTCAA
3041394 CAGGTC
1 C-GGTC
3041400 GGATCAACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 15 0.58
8 11 0.42
ACGTcount: A:0.26, C:0.29, G:0.31, T:0.14
Consensus pattern (7 bp):
CGGTCAA
Found at i:3041386 original size:15 final size:15
Alignment explanation
Indices: 3041356--3041399 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
3041346 GGTCAACAGT
3041356 GGTCAACGCCGGTCAAC
1 GGTCAACG--GGTCAAC
3041373 GGTCAACGGGTCAAC
1 GGTCAACGGGTCAAC
*
3041388 GGTCAACAGGTC
1 GGTCAACGGGTC
3041400 GGATCAACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 18 0.69
17 8 0.31
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.14
Consensus pattern (15 bp):
GGTCAACGGGTCAAC
Found at i:3041428 original size:13 final size:13
Alignment explanation
Indices: 3041412--3041448 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
3041402 ATCAACGGGT
*
3041412 CGGGTCAGGTCAA
1 CGGGTCGGGTCAA
*
3041425 CGGGTCGGGTAAA
1 CGGGTCGGGTCAA
3041438 CGGGTCGGGTC
1 CGGGTCGGGTC
3041449 GGGTTATGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.16, C:0.22, G:0.46, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:3041431 original size:31 final size:33
Alignment explanation
Indices: 3041379--3041448 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 33
3041369 CAACGGTCAA
*
3041379 CGGGTCAACGGTCAACAGGTCGGATCAACGGGT
1 CGGGTCAACGGTCAACAGGTCGGATAAACGGGT
* *
3041412 CGGGTC-A-GGTCAACGGGTCGGGTAAACGGGT
1 CGGGTCAACGGTCAACAGGTCGGATAAACGGGT
3041443 CGGGTC
1 CGGGTC
3041449 GGGTTATGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 27 0.79
32 1 0.03
33 6 0.18
ACGTcount: A:0.20, C:0.23, G:0.41, T:0.16
Consensus pattern (33 bp):
CGGGTCAACGGTCAACAGGTCGGATAAACGGGT
Found at i:3046326 original size:18 final size:18
Alignment explanation
Indices: 3046303--3046356 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
3046293 AGGGTTATAT
*
3046303 GTGGTCCTTCGGGACAAA
1 GTGGTCATTCGGGACAAA
* *
3046321 GTGGTCATTTGAGACAAA
1 GTGGTCATTCGGGACAAA
* *
3046339 ATGTTCATTCGGGACAAA
1 GTGGTCATTCGGGACAAA
3046357 TTTTAAGTGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (18 bp):
GTGGTCATTCGGGACAAA
Found at i:3048882 original size:21 final size:21
Alignment explanation
Indices: 3048832--3048898 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
3048822 TTTCAGAGAC
* *
3048832 ACTTACTAAGGTACTTCACCT
1 ACTTACCAAGGTACTTCATCT
* *
3048853 ATTTCCCAAGGTACTTCATCT
1 ACTTACCAAGGTACTTCATCT
* *
3048874 ACTTACCAAGATAATTCATCT
1 ACTTACCAAGGTACTTCATCT
3048895 ACTT
1 ACTT
3048899 TCATTTTTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (21 bp):
ACTTACCAAGGTACTTCATCT
Found at i:3054779 original size:20 final size:21
Alignment explanation
Indices: 3054757--3054832 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
3054747 GGCATTCAAT
3054757 GGGTATCGATACCTAGGAATG
1 GGGTATCGATACCTAGGAATG
* *
3054778 GGGTATC-AGTACCCTAGCATTG
1 GGGTATCGA-TA-CCTAGGAATG
3054800 GGGTATCGATACC-AGGTTAA--
1 GGGTATCGATACCTAGG--AATG
3054820 GGGTATCGATACC
1 GGGTATCGATACC
3054833 ATGCAAACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
20 16 0.35
21 11 0.24
22 18 0.39
23 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (21 bp):
GGGTATCGATACCTAGGAATG
Found at i:3054812 original size:22 final size:22
Alignment explanation
Indices: 3054753--3054812 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
3054743 AAAAGGCATT
3054753 CAAT-GGGTATCGATA-CCTAG
1 CAATGGGGTATCGATACCCTAG
*
3054773 GAATGGGGTATC-AGTACCCTAG
1 CAATGGGGTATCGA-TACCCTAG
*
3054795 CATTGGGGTATCGATACC
1 CAATGGGGTATCGATACC
3054813 AGGTTAAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.12
21 9 0.27
22 19 0.58
23 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (22 bp):
CAATGGGGTATCGATACCCTAG
Found at i:3058085 original size:16 final size:17
Alignment explanation
Indices: 3058064--3058096 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
3058054 CCCACTTATA
3058064 ATTTATAATTT-TATTT
1 ATTTATAATTTCTATTT
3058080 ATTTATAATTTCTATTT
1 ATTTATAATTTCTATTT
3058097 GTTATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTATAATTTCTATTT
Found at i:3072406 original size:20 final size:19
Alignment explanation
Indices: 3072381--3072435 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
3072371 GTTTTTCAAC
3072381 TTTTCTTGATTTTCTTTTCT
1 TTTTCTTG-TTTTCTTTTCT
* *
3072401 TTTTCTTCTTTTTGTTTTCT
1 TTTTCTT-GTTTTCTTTTCT
3072421 TCTTT-TTGTTTTCTT
1 T-TTTCTTGTTTTCTT
3072436 CTTTTGAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 6 0.21
20 20 0.69
21 3 0.10
ACGTcount: A:0.02, C:0.15, G:0.05, T:0.78
Consensus pattern (19 bp):
TTTTCTTGTTTTCTTTTCT
Found at i:3072409 original size:14 final size:14
Alignment explanation
Indices: 3072392--3072440 Score: 82
Period size: 14 Copynumber: 3.5 Consensus size: 14
3072382 TTTCTTGATT
3072392 TTCTTTTCT-TTTTC
1 TTCTTTT-TGTTTTC
3072406 TTCTTTTTGTTTTC
1 TTCTTTTTGTTTTC
3072420 TTCTTTTTGTTTTC
1 TTCTTTTTGTTTTC
3072434 TTCTTTT
1 TTCTTTT
3072441 GAGTGCTTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 1 0.03
14 33 0.97
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (14 bp):
TTCTTTTTGTTTTC
Found at i:3074228 original size:15 final size:15
Alignment explanation
Indices: 3074210--3074248 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
3074200 CGGTTTCGTT
3074210 TTTTTTGGTTATCGG
1 TTTTTTGGTTATCGG
3074225 TTTTTTGG--ATCGG
1 TTTTTTGGTTATCGG
3074238 -TTTTTGGTTAT
1 TTTTTTGGTTAT
3074249 TTTTTTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 7 0.32
13 5 0.23
14 2 0.09
15 8 0.36
ACGTcount: A:0.08, C:0.05, G:0.26, T:0.62
Consensus pattern (15 bp):
TTTTTTGGTTATCGG
Found at i:3074236 original size:13 final size:14
Alignment explanation
Indices: 3074210--3074242 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
3074200 CGGTTTCGTT
3074210 TTTTTTGGTTATCGG
1 TTTTTTGG-TATCGG
3074225 TTTTTTGG-ATCGG
1 TTTTTTGGTATCGG
3074238 TTTTT
1 TTTTT
3074243 GGTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
15 8 0.44
ACGTcount: A:0.06, C:0.06, G:0.24, T:0.64
Consensus pattern (14 bp):
TTTTTTGGTATCGG
Found at i:3078726 original size:62 final size:62
Alignment explanation
Indices: 3078656--3078779 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
3078646 TAATATATAT
* *
3078656 TGTTATCATAAAATATGACATAAATTAAGTGACTAATTATGTTATAAAGTCATAAGTATTAG
1 TGTTATCATAAAATATGAAATAAATTAAGTGACCAATTATGTTATAAAGTCATAAGTATTAG
*
3078718 TGTTATCATAAAATATGAAATAAATTAAGTGACCAGTTATGTTATAAAGTCATAAGTATTAG
1 TGTTATCATAAAATATGAAATAAATTAAGTGACCAATTATGTTATAAAGTCATAAGTATTAG
3078780 AAGTATCATG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (62 bp):
TGTTATCATAAAATATGAAATAAATTAAGTGACCAATTATGTTATAAAGTCATAAGTATTAG
Found at i:3080366 original size:4 final size:4
Alignment explanation
Indices: 3080352--3089190 Score: 12567
Period size: 4 Copynumber: 2265.8 Consensus size: 4
3080342 ATTAAAAAAC
* * * *
3080352 CATA TATA CATA CATA TATA CATA CACA CATA CATA CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
3080400 CACA CATA CACA CATA CATA CATA CATA CATA TATA CATA CATA CACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3080448 TATA AATA CATA CATA CATA CATA CATA CATA CAAA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3080496 CATA TATA CATA CAGA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080544 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080592 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080640 CATA CATA CATA CATA CATA CA-A CATA CATA CATA CATA CATA CAT-
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080686 CATA CATA C--A CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080732 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3080780 C-TA CATA CATA CATA CATA CATA CATC CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080827 CATA CATA CATA C-TA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3080874 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3080922 CATA CATA CATA CACA TATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3080970 CATA CATA CATA CATA CATA CATA CACA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081018 CCTA CATA C--A CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081064 C-TA CATA CATA CATA CATA CATA CATA TATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081111 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081159 CATA CATA TATA CATA CATA CAT- -ATA CATA CATA CATA C-TA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081204 CATA CATA CATA CATA CAT- -ATA CATA CACTA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CA-TA CATA CATA CATA CATA
*
3081251 CATA C-TA CATA CATA C--A CATA CATA CATA CATA CATA CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081296 CATG CATA CATA CAT- CATA CATA CATA CATA CAT- -ATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081341 CATA CAT- CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081388 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081436 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * **
3081484 CATA CATA CACCA TATA CATA CATA CACG CATA CATA C--A CATA CATA
1 CATA CATA CA-TA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081531 CATA CATA CATA CATA CATA CATA CATA CATA CCTA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081579 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081627 CATA CA-A CAT- -ATA CATA CATA CATA CATA CATA CATA C-TA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3081671 CA-G CATA CATA CATA CATA CATA CATA CATA CATA C-TA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* ** * * *
3081717 CATA CATA CGCATA TATA CATA CACG CATA CATA TACA CATA CATA CACA
1 CATA CATA --CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081767 CATA CATA C-TA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* ** *
3081814 CATA CATA CATA CATA TATA CATA CACG CATA TATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3081862 CATA CATA CATA CATA CATA CATA CATA CAT- -ATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * ** * **
3081908 CATA CACG CATA TATA CATA CACG CATA TATA CATA CATA CACG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
3081956 CATA TACA CATA CATA CACA CATA TATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082004 TATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082052 CATA CATA CATA CATA CATA CATA CATA C-TA CAGA CATA CATA CAT-
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* **
3082098 -ATA TATA CACG CATA -ATA CATA C--A CATA CATA C-TA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** *
3082141 CATA CATA CATA CATA -ATA CATA CATA CATA CATA CACG CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** *
3082188 CATA CACG CAT- -ATA CATA CATA CATA CATA C--A CATA CATA CACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3082232 CATA TATA CATA CATA CATA CATA CATA TATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082280 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082328 CATA CATA CA-A CATA CATA CATA CATA CATA C-TA CATA CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082374 CATG CATA CATA CATA CATA CAT- CATA CA-A CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082420 TATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C-TA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082467 CATA CATA CATA CATA CATA CATA CAT- CATA CA-A CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082513 CATA CA-A CATA CATA CCATA CATA CATA CATA CATA CAT- CATA CATA
1 CATA CATA CATA CATA -CATA CATA CATA CATA CATA CATA CATA CATA
3082560 CATA CATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * ** *
3082606 CACG CATA TATA CATA CATA CATA CATA CATA CATA CACG CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * * *
3082654 CCA-A CATA CACG CATA CATA TACA CATA CATA CACA CATA CATA CATA
1 -CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * ** * *
3082702 CATA CATA CACG CATA TATA CATA CATA CACG CATA CATA GACA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3082750 CATA CACA CATA CATA CATA TATA CATA C--A CACA CATA CATA CAT-
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082795 -ATA CATA CATA CATA CATA CATA CATA CACTA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CA-TA CATA CATA CATA CATA
*
3082843 CATA CATA CAT- CATA CATA CATA CATA CATA CAGA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082890 CATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3082936 CATA CATA CATA CATA CATA CA-A CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3082983 C--A CATA C-TA CATA CATA CATA CATA CAT- -ATA CATA CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
**
3083026 CATA CACG CATA CATA CAT- CATA CATA CATA CATA CATA CAT- -ATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** ** *
3083071 CATA CATA CATA CATA CATA CACG CAT- -ATA CATA CACG CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3083117 C--A CATA CATA C--A CATA CAT- CATA CAT- -ATA CATA CAGA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3083158 CATA CATA CATA CATA CATA CCTA CATA C-TA CATA C-TA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083204 CATA CATA C-TA CATA CATA CATA CATA CA-A CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083250 CATA CAT- CATA CATA CCATA CATA CATA CATA CATA CATA CAT- -ATA
1 CATA CATA CATA CATA -CATA CATA CATA CATA CATA CATA CATA CATA
** * ** *
3083296 CATA CATA CATA CATA CACG CATA TATA CATA CACG CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3083344 CATA CCATA CAT- -ATA CATA CATA CACA CATA TACTA CATA CATA CATA
1 CATA -CATA CATA CATA CATA CATA CATA CATA CA-TA CATA CATA CATA
*
3083392 CATA C--A CATA CATA CATA CATA CATA CATA CATA TATA C--A CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083436 CATA CATA CATA CATCA CA-A CATA C--A CATA CATA CATA CATA CATA
1 CATA CATA CATA CAT-A CATA CATA CATA CATA CATA CATA CATA CATA
3083482 CATA CATA C-TA CAT- -ATA CATA CATA CATA CATA CATA C-TA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083526 CATA CATA CATA CAT- CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3083573 CATA TACA CATA CATA CATA CATA CAT- CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3083620 CATA CATA CATA CATA CATA CATA CATA CATA CAGA C--A CATA CAGA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3083666 C--A CATA CATA CATA CATA C--A CATA CATA CATA CATA CAGA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3083710 CAGA CATA CATA CATA CATA TATA CATA CAT- -ATA CATA CAAA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3083756 CAT- TATA AATA CATA CATA CATA CATA CATA CATA CATA CATA TAATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA -CATA
3083804 CATA CATA CATA -ATA CATA CATA CATA CATA C-TA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083850 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT- CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083897 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083945 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3083993 CATA CATA CATA CAT- -ATA CATA CATA CATA CATA CATA CATA C--A
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3084037 CATA CATA C--A CATA CATA CATA C--A CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3084081 CATA CATA CAGATA CATA CATA CTATA CATA CATA CATA CATA CATA C--A
1 CATA CATA C--ATA CATA CATA C-ATA CATA CATA CATA CATA CATA CATA
3084130 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3084178 CA-A CAGA CATA CATA CATA CATA CATA CATA CAGA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
**
3084225 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CACG CAT-
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
**
3084272 -ATA CATA CATA CATA CATA CATA CAT- -ATA CA-A CATA CACG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * ** *
3084316 CATA C--A CATA CATA CACA CATA CATA CATA CATA CACA CGCA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * *
3084362 CATA CATA CACG CATA CATAGA CACA CATA C--A CAGA CATA CATA CATA
1 CATA CATA CATA CATA CAT--A CATA CATA CATA CATA CATA CATA CATA
* *
3084410 C--A CACA CATA CATA CATA TATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3084456 CATA C--A CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3084502 CATA CATA CATA CATA C-TA CATA CACA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3084549 CAT- -ATA CAT- CAGA CAT- CATA CATA C-TA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
3084592 CAT- CATA CATA CATA CATA CATA CATA CATA CATC CATA TATA TACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3084639 GCATA -ATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 -CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3084687 CATA CATA CAT- -ATA CATA CATA C--A CATA CA-C CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * * *
3084730 CACG CATA TATA CACTA CACGA CATA CATA CATA CACA CATA CATA CATA
1 CATA CATA CATA CA-TA CA-TA CATA CATA CATA CATA CATA CATA CATA
*
3084780 CATA CATA CATA CATA CATA CATA CAT- -ATA CATA CATA CAGA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3084826 CATA CAATA CATA CATA CA-A CATA CAATA TATA CATA CATA CATA CATA
1 CATA C-ATA CATA CATA CATA CATA C-ATA CATA CATA CATA CATA CATA
* *
3084875 CATA CATA CCTA C--A CATA CATA CATA CATA TATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* **
3084921 CATA TATA CATA CACG CATA CATA C--A CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3084967 CATA CATA CATA -TTA CAGA C--A CATA CATA CATA TATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3085012 CAGA CATA CAT- -ATA CATA C--A CATA CATA CATA CATA CATA CAGA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3085056 CATA TATA CATA CATA C--A CATA CAATA C-TA CATA CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA C-ATA CATA CATA CATA CATA CATA
3085102 CATA CATA CATA CATA CATA CATA CATA CATA C--A CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085148 CACCA CATA CATA CATA C--A CATA TCATA CATA CATA CAT- CATA CATA
1 CA-TA CATA CATA CATA CATA CATA -CATA CATA CATA CATA CATA CATA
3085195 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * ** *
3085243 CATCA CATA CATA CATA CATA CACA CATA TATA C-TA CATA CACG CAGA
1 CAT-A CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
**
3085291 CATA CA-A CATA CATA C--A CATA CATA CATA CATA CATA CACG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * *
3085336 TA-A CATA CATA CA-C CATA CATA GACA C-TA CATA CACA CATA CCTA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * ** *
3085381 CATA TATA CATA CACA CA-A CATA CATA CATA CACG CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3085428 CATA CCCATA CATA C--A CATA CATA CACA CATA TATA CATA CATA CATA
1 CATA --CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * *
3085476 CACG CAT- -ATA CATA CATA CATA CATAGA CATA CATA CACA CCTA CATA
1 CATA CATA CATA CATA CATA CATA CAT--A CATA CATA CATA CATA CATA
* * *
3085524 CATA TA-A CATA CACA CA-C CATA C--A CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085568 CATA CATA CATA CATA CATA CATA CA-A CATA CATA CATA CTACA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C-ATA CATA
3085616 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3085664 CATA CACA CATA CATA CATA CATA CACA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3085712 CAT- CATA CATA CATA CATA CATA CATA CATA CATA CA-C CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * *
3085758 CATA CATA CACG CATA CATA TACA CATA CATA C--A CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085804 CA-A CATA CATA CATA CATA CATA C-TA CATA CATA CATA CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3085850 CACA CATA CATA CCTATA TATA CATA CACA CATA CATA CATA CAT- CATA
1 CATA CATA CATA -C-ATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085899 CATA CATA CATA CATA CATA CATA CCTA CATA CATA CATA C--A CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085945 CAGA CATA CATA C-TA CATA CATA CATA CATA C--A CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3085990 CAT- -ATA CATA CATA CAGA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086036 CATA CATA CATA CATA CATA CATA CATA CA-A CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086083 C-TA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086130 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086178 CATA CATA CATA CA-A CATA CATA C--A CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086223 CATA CATA CAT- CATA CATA CATA CATA CATA CATA CATA CCATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA -CATA CATA
3086271 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086319 CA-A CATA CATA C--A CATA CATA CATA CATA CATA CATAA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT-A CATA CATA
* *
3086365 CATA CATA CATA CATA CATA CATA CTACA CATA CATA CAGA CATA CATA
1 CATA CATA CATA CATA CATA CATA C-ATA CATA CATA CATA CATA CATA
3086414 CATA CATA CATA CATA CATA CATA CATA CATA CAATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA C-ATA CATA CATA CATA
3086463 CATA CATA CA-A CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3086510 CCATC CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT-
1 -CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3086558 -ATA CATA CA-C CATA CATA CATA CATA CACA CAGA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3086604 CATA CATA CA-A CAT- CATA CATA CATA CATA CAGA C--A CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086648 CATA CCATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA -CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3086697 CATA CATA C--A CATA CATA CATA CACA TATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3086743 CATA CAGA CATA CATA CATA CATA CATA TATA CATA C--A CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086789 CATA CATA CA-A CATA CATA CAT- -ATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3086834 C-TA CATA CATA CATA CATA CATA CCTA CATA CATA CATA CAGA CAGA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086881 CATA CATA CATA CATA CATA C--A CATA CAT- CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3086926 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C-TA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3086973 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAGA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087021 CATA CATA CCTA -ATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087068 CATA CA-A CATA CATA CAGA CATA CATA CATA CATA CATA C--A CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087113 CATA C--A CACA CATA CATA CATA CATA CATA CATA CA-A CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087158 CA-A CATA CATA CATA CATA CATA TATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087205 CAT- -ATA CATA CATA CATA CATCA CCTA C--A CATA C-TA CATAA CATA
1 CATA CATA CATA CATA CATA CAT-A CATA CATA CATA CATA CAT-A CATA
*
3087250 CATA CATA CATA CATA CATA CATC CATA CATA CATA C-TA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087297 CATA C-TA CATA -ATA CATA CATA CATA CATA CATA CATA CATA CA-G
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3087342 CATA CATA CATA CATA CATA CATA CAAA TCATA CATA CA-C CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA -CATA CATA CATA CATA CATA
*
3087390 CA-A CATA CATA -AGA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087436 CATA CATA CATA CCATA CATA CATA CATA CATA C--A CATA CATA CA-A
1 CATA CATA CATA -CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087482 CATA CATA CATA CATA CATA CATA CATA CATA CATA CTATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA C-ATA CATA CATA
**
3087531 CATA CATA CATA CATA CATA CATA CATA CATA CATA CACC CATA -ATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087578 CATA CATA CATA CATA CATA CA-A CATA CATA CATA C--A CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087623 CATA TCCATA CATA CATA CATA CAT- -ATA CATA CATA CATA CAGA CATA
1 CATA --CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087671 CATA CATA CATA CATA CATA CAT- CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087718 CATA CATA CATA TATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087766 CATA CA-A CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3087813 CATA CAGA CATA CATA CATA CAGA CATA CATA CATA CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087861 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3087909 TATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA C--A
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087953 CATA CATA C--A CATA CATA CA-A CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3087998 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088046 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088094 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
**
3088142 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CACG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* ** * * *
3088190 TATA CATA CATA CACG CATA CATA TACA CATA CATA CACA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088238 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * * * *
3088286 CACG CATA TATA CATA CATA CATG CATA CATA TACA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088334 CATA CATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3088380 CATA CATA CATA CATA CATA CATA CATA CATA CAGA CATA CATA CCTA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088428 CATA CATA CATA CATA CATA CATA CATCA CATA CATA CATA C-TA CATA
1 CATA CATA CATA CATA CATA CATA CAT-A CATA CATA CATA CATA CATA
3088476 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CCCATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA --CATA
* * ** *
3088526 TATA CATA CATCA CCATA CATA TATA CATA CATA CACG CATA CATA CACA
1 CATA CATA CAT-A -CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
3088576 CATA CATA CATA CATA CATA TATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3088624 TATA CATA CATA CATA TATA CATA CAGA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
3088672 CATA CATA CATA CATA CACA CATA CATA CATA CATA CAAA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3088720 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* ** * *
3088768 CATA CATA CATA CATA CATA TATA CATA CATA CACG CATA CATA TACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* ** *
3088816 CATA CATA CACA CATA CATA CATA CATA CATA CACG CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * * * *
3088864 CATA CACG CATA CATA GACA CATA CATA CACA CATA CATA CATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * ** *
3088912 CATA CACA CACA CATA CATA CATA CATA CACG CATA TATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * * * *
3088960 CACG CATA CATA TACA CATA CATA CACA CATA TATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
** * ** * * *
3089008 CACG CATA TATA CATA CATA CACG CATA CATA GACA CATA CATA CACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
3089056 CATA CATA CATA TATA CATA CACA CACA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3089104 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
3089152 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CAT
3089191 CGATACACCC
Statistics
Matches: 7940, Mismatches: 570, Indels: 650
0.87 0.06 0.07
Matches are distributed among these distances:
2 168 0.02
3 304 0.04
4 7317 0.92
5 118 0.01
6 33 0.00
ACGTcount: A:0.49, C:0.26, G:0.01, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:3094540 original size:17 final size:17
Alignment explanation
Indices: 3094520--3094563 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
3094510 AATTTTTTAT
*
3094520 TTTTTATAAATATGATA
1 TTTTTATAAATATAATA
* *
3094537 TTTTTATTAATTTAATA
1 TTTTTATAAATATAATA
3094554 TTTATTATAA
1 TTT-TTATAA
3094564 CCATTAGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTTTATAAATATAATA
Found at i:3094550 original size:25 final size:23
Alignment explanation
Indices: 3094505--3094550 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
3094495 GTTTAGGATT
*
3094505 AATATAATTTTTTATTTTTTATA
1 AATATAATTTTTTATTATTTATA
*
3094528 AATATGATATTTTTATTAATTTA
1 AATATAAT-TTTTTATT-ATTTA
3094551 ATATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
24 8 0.42
25 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
AATATAATTTTTTATTATTTATA
Found at i:3095012 original size:31 final size:31
Alignment explanation
Indices: 3094977--3095055 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
3094967 TTAAAAACCA
*
3094977 TAAGTTTTGGTCACTTACGTTATCATTTTAT
1 TAAGTTTTGGTCACTTACGTTATCATTTTAC
* * * * *
3095008 TAAGTTTTGGTTAATTATGTTGTCGTTTTAC
1 TAAGTTTTGGTCACTTACGTTATCATTTTAC
3095039 TAAGTTTTGGTCACTTA
1 TAAGTTTTGGTCACTTA
3095056 GACATTGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.52
Consensus pattern (31 bp):
TAAGTTTTGGTCACTTACGTTATCATTTTAC
Found at i:3096334 original size:268 final size:271
Alignment explanation
Indices: 3095857--3096394 Score: 1046
Period size: 268 Copynumber: 2.0 Consensus size: 271
3095847 GTGGATGTAT
3095857 TTTCGAATCCAGTTATCGGGTTGTTTAGATCCATTGATTATGTTTCACCAAAGGCACTTTCTTAA
1 TTTCGAATCCAGTTATCGGGTTGTTTAGATCCATTGATTATGTTTCACCAAAGGCACTTTCTTAA
3095922 GAGAAAATCACCACTAAGAGTGGTATCCAATTATCGATTATTTGGATAGATCGATTTGTCTTCTT
66 GAGAAAATCACCACTAAGAGTGGTATCCAATTATCGATTATTTGGATAGATCGATTTGTCTTCTT
3095987 GTTCCTTGTTGGATTTGACATTATGCAATCTCAATATTTGGAAATTGATTTTTAGTTTGCATAAC
131 GTTCCTTGTTGGATTTGACATTATGCAATCTCAATATTTGGAAATTGATTTTTAGTTTGCATAAC
3096052 TAAGAATACACGGTTTCATTTTATCTATAAATGCCTACCCTCTTA-TTTTATCTAAACTTGT-G-
196 TAAGAATACACGGTTTCATTTTATCTATAAATGCCTACCCTCTTATTTTTATCTAAACTTGTGGT
3096114 GTTATCATTTA
261 GTTATCATTTA
3096125 TTTCGAATCCAGTTATCGGGTTGTTTAGATCCATTGATTATGTTTCACCAAAGGCACTTTCTTAA
1 TTTCGAATCCAGTTATCGGGTTGTTTAGATCCATTGATTATGTTTCACCAAAGGCACTTTCTTAA
3096190 GAGAAAATCACCACTAAGAGTGGTATCCAATTATCGATTATTTGGATAGATCGATTTGTCTTCTT
66 GAGAAAATCACCACTAAGAGTGGTATCCAATTATCGATTATTTGGATAGATCGATTTGTCTTCTT
3096255 GTTCCTTGTTGGATTTGACATTATGCAATCTCAATATTTGGAAATTGATTTTTAGTTTGCATAAC
131 GTTCCTTGTTGGATTTGACATTATGCAATCTCAATATTTGGAAATTGATTTTTAGTTTGCATAAC
*
3096320 TAAGATTACACGGTTTCATTTTATCTATAAATGCCTACCCTCTTATTTTTATCTAAACTTGTGGT
196 TAAGAATACACGGTTTCATTTTATCTATAAATGCCTACCCTCTTATTTTTATCTAAACTTGTGGT
3096385 GTTATCATTT
261 GTTATCATTT
3096395 GTTATCAGAA
Statistics
Matches: 266, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
268 239 0.90
269 16 0.06
270 1 0.00
271 10 0.04
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (271 bp):
TTTCGAATCCAGTTATCGGGTTGTTTAGATCCATTGATTATGTTTCACCAAAGGCACTTTCTTAA
GAGAAAATCACCACTAAGAGTGGTATCCAATTATCGATTATTTGGATAGATCGATTTGTCTTCTT
GTTCCTTGTTGGATTTGACATTATGCAATCTCAATATTTGGAAATTGATTTTTAGTTTGCATAAC
TAAGAATACACGGTTTCATTTTATCTATAAATGCCTACCCTCTTATTTTTATCTAAACTTGTGGT
GTTATCATTTA
Found at i:3096716 original size:30 final size:31
Alignment explanation
Indices: 3096682--3096742 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
3096672 TAACGGCGTT
3096682 CAAT-ATCCAAGTGACCAAAA-CTTAATAAAA
1 CAATAATCCAAGTGA-CAAAATCTTAATAAAA
**
3096712 CAATAATGTAAGTGACAAAATCTTAATAAAA
1 CAATAATCCAAGTGACAAAATCTTAATAAAA
3096743 TGATAACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (31 bp):
CAATAATCCAAGTGACAAAATCTTAATAAAA
Found at i:3096725 original size:31 final size:31
Alignment explanation
Indices: 3096690--3096767 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
3096680 TTCAATATCC
**
3096690 AAGTGACCAAAACTTAATAAAACAATAATGT
1 AAGTGACCAAAACTTAATAAAACAATAACAT
**
3096721 AAGTGA-CAAAATCTTAATAAAATGATAACAT
1 AAGTGACCAAAA-CTTAATAAAACAATAACAT
*
3096752 TAGTGACCAAAACTTA
1 AAGTGACCAAAACTTA
3096768 TGTTTTTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 5 0.12
31 30 0.75
32 5 0.12
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.24
Consensus pattern (31 bp):
AAGTGACCAAAACTTAATAAAACAATAACAT
Found at i:3097534 original size:2 final size:2
Alignment explanation
Indices: 3097527--3097563 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
3097517 CCATCCATCC
*
3097527 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3097564 AAAAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3097905 original size:17 final size:17
Alignment explanation
Indices: 3097856--3097905 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
3097846 TTGTTCATGT
3097856 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
*
3097873 TTTGAG----TATCAATG
1 TTTG-GTTTCTATGAATG
3097887 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
3097904 TT
1 TT
3097906 AGAAGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
17 13 0.50
18 1 0.04
ACGTcount: A:0.20, C:0.06, G:0.22, T:0.52
Consensus pattern (17 bp):
TTTGGTTTCTATGAATG
Found at i:3099576 original size:264 final size:262
Alignment explanation
Indices: 3099053--3099583 Score: 940
Period size: 264 Copynumber: 2.0 Consensus size: 262
3099043 TATTTGTTCA
3099053 AAGATAACTCCTAATCATTTGAAATTGAACTCTCACACCTGTTACATTCTTAGTGCTCGAACCCG
1 AAGATAACTCCTAATCATTTGAAATTGAACTCTCACACCTGTTACATTCTTAGTGCTCGAACCCG
3099118 AAACTTTAAGGAATAAAAAATATTGTTACTATCGAGATCGCTTGATTCATATATTTTAATTGGTT
66 AAACTTTAAGGAATAAAAAATATTGTTACTATCGAGATCGCTTGATTCATATATTTTAATTGGTT
3099183 TTTAAATTAACACAAATACATGTATAATTATTTATTATTACTTTTTATTAATGTTTAAATTAATT
131 TTTAAATTAACACAAATACATGTATAATTATTTATTATTACTTTTTATTAATGTTTAAATTAATT
3099248 GTTAAACATAAATTGATATAACTTAAAGTTTTTTTTTCCTTTACGTATATATATATATTATATAT
196 GTTAAACATAAATTGATATAACTTAAAGTTTTTTTTTCCTTTAC--ATATATATATATTATATAT
3099313 TGTC
259 TGTC
3099317 AAGATAACTCCTAATCATTTGAAATTGAACTCTCACACCTGTTACATTCTTAGTGCTCGAACCCG
1 AAGATAACTCCTAATCATTTGAAATTGAACTCTCACACCTGTTACATTCTTAGTGCTCGAACCCG
3099382 AAACTTTAAGGAAT-AAAAATAATTGTTTTACTATCGAGATCGCTTGATTCATATAATTTTAATT
66 AAACTTTAAGGAATAAAAAAT-ATTG--TTACTATCGAGATCGCTTGATTCATAT-ATTTTAATT
3099446 GGTTTTTAAATTAACACAAATACATGTATAATTATTTATTAATTACTTTTTATTAATGTTTAAAT
127 GGTTTTTAAATTAACACAAATACATGTATAATTATTTATT-ATTACTTTTTATTAATGTTTAAAT
3099511 TAATTGTTAAACATAAATTGATATAACTTAAAAGTTTTTTTTTTCCTTTA-AGTATTATATATAT
191 TAATTGTTAAACATAAATTGATATAACTT-AAAG-TTTTTTTTTCCTTTACA-TA-TATATATAT
3099575 ATATATATT
252 -TATATATT
3099584 ATTTTTTTTC
Statistics
Matches: 257, Mismatches: 0, Indels: 14
0.95 0.00 0.05
Matches are distributed among these distances:
263 6 0.02
264 83 0.32
266 27 0.11
267 50 0.19
268 55 0.21
269 13 0.05
270 23 0.09
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (262 bp):
AAGATAACTCCTAATCATTTGAAATTGAACTCTCACACCTGTTACATTCTTAGTGCTCGAACCCG
AAACTTTAAGGAATAAAAAATATTGTTACTATCGAGATCGCTTGATTCATATATTTTAATTGGTT
TTTAAATTAACACAAATACATGTATAATTATTTATTATTACTTTTTATTAATGTTTAAATTAATT
GTTAAACATAAATTGATATAACTTAAAGTTTTTTTTTCCTTTACATATATATATATTATATATTG
TC
Found at i:3099737 original size:11 final size:11
Alignment explanation
Indices: 3099721--3099745 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3099711 TCATAAAATA
3099721 TTTTTTTATAT
1 TTTTTTTATAT
3099732 TTTTTTTATAT
1 TTTTTTTATAT
3099743 TTT
1 TTT
3099746 AAGTTGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTATAT
Found at i:3107391 original size:25 final size:23
Alignment explanation
Indices: 3107357--3107418 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 23
3107347 CAAATTAATA
3107357 AATAATATTATTTATTAGAAATATT
1 AATAATATTATTT-TTA-AAATATT
*
3107382 AATATTATTATTTTTAAAATATTTT
1 AATAATATTATTTTTAAAATA--TT
3107407 AATAATA-TATTT
1 AATAATATTATTT
3107419 AATATTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 5 0.15
24 8 0.24
25 20 0.61
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
AATAATATTATTTTTAAAATATT
Found at i:3107532 original size:32 final size:32
Alignment explanation
Indices: 3107461--3107532 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
3107451 ATCAATTCTA
* * *
3107461 TAATT-TTATAAATAAAATATTATGACTATTT
1 TAATTATTATAAATAAAATATTATAAATATAT
3107492 TAATTTATTA-AAATAAAATATTATAAATCATAT
1 TAA-TTATTATAAATAAAATATTATAAAT-ATAT
3107525 TAATTATT
1 TAATTATT
3107533 TATTAAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 3 0.09
32 23 0.66
33 9 0.26
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (32 bp):
TAATTATTATAAATAAAATATTATAAATATAT
Found at i:3107631 original size:15 final size:15
Alignment explanation
Indices: 3107611--3107640 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3107601 TAAGGATATT
3107611 ATTATAATATTAAAA
1 ATTATAATATTAAAA
3107626 ATTATAATATTAAAA
1 ATTATAATATTAAAA
3107641 TAAAAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATAATATTAAAA
Found at i:3107635 original size:63 final size:59
Alignment explanation
Indices: 3107507--3107641 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
3107497 TATTAAAATA
* * * *
3107507 AAATATTATAAATCATATTAATTATTTATTAAAATAAGACTTTTATATTATTAAAGTAAT
1 AAATATTATAAATCATATCAATTACTTATTAAAATAAGAATTTTATAATATTAAAG-AAT
* *
3107567 AAATATTATTAATTATATCAATTACTTATTAAAATAAGGATATTATTATAATATTAAA-AATT
1 AAATATTATAAATCATATCAATTACTTATTAAAATAA-GA-ATT-TTATAATATTAAAGAA-T
3107629 ATAATATTA-AAAT
1 A-AATATTATAAAT
3107642 AAAAATATTA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
60 33 0.52
61 4 0.06
62 7 0.11
63 19 0.30
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (59 bp):
AAATATTATAAATCATATCAATTACTTATTAAAATAAGAATTTTATAATATTAAAGAAT
Found at i:3110805 original size:21 final size:21
Alignment explanation
Indices: 3110770--3110847 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
3110760 CTAATATCTG
*
3110770 CCTCGTCCACAGCCTCTGAAT
1 CCTCGTCCACGGCCTCTGAAT
* *
3110791 CCTTGTCTACGGCCTCTGAAT
1 CCTCGTCCACGGCCTCTGAAT
3110812 CCTCGTCCACGGCCTCTGAAT
1 CCTCGTCCACGGCCTCTGAAT
3110833 CCTCGTCCACGGCCT
1 CCTCGTCCACGGCCT
3110848 GATGTTGGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.14, C:0.42, G:0.18, T:0.26
Consensus pattern (21 bp):
CCTCGTCCACGGCCTCTGAAT
Found at i:3113087 original size:21 final size:21
Alignment explanation
Indices: 3113065--3113135 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 21
3113055 AGTAACCAAT
3113065 AAACCATAACAAACTAATAATAAC
1 AAACCATAACAAAC---TAATAAC
** *
3113089 AAAATAATAACAAGCTAATAAC
1 -AAACCATAACAAACTAATAAC
3113111 AAACCATAACAAACTAATAAC
1 AAACCATAACAAACTAATAAC
3113132 AAAC
1 AAAC
3113136 TAATAACACT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 22 0.55
22 7 0.17
25 11 0.28
ACGTcount: A:0.63, C:0.20, G:0.01, T:0.15
Consensus pattern (21 bp):
AAACCATAACAAACTAATAAC
Done.