Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 73
Found at i:8066118 original size:140 final size:140
Alignment explanation
Indices: 8065943--8066230 Score: 346
Period size: 140 Copynumber: 2.1 Consensus size: 140
8065933 AAAAAAATTA
* * * *
8065943 CCTAAATTAAGGGACTAAAAGTGAAATTAATCTAAAATGGAGACAT-TAATTATTAACCCTAATC
1 CCTAAATTAAAGGACTAAAAGTGAAATTAATCTAAAATAGAGAC-TCTAATCATTAACCCAAATC
* ** * *
8066007 GATTTTAATCAATTATTA-AATTGAATAATCAAAATTGAATCTCAGGAATTAAGGCAAGGAACAA
65 GATTTTAACCAATTA-TAGAATCAAATAATCAAAATGGAACCTCAGGAATTAAGGCAAGGAACAA
8066071 ATCCAATATTCC
129 ATCCAATATTCC
* * * * * **
8066083 CCTAAATTAAAGGACTAAAAGTGAAATTATTCTAAATTATAGGCTCTAATCATTAATCCAAATTT
1 CCTAAATTAAAGGACTAAAAGTGAAATTAATCTAAAATAGAGACTCTAATCATTAACCCAAATCG
* * * *
8066148 ATTTTAACCAATTATAGAATCAAATAATCAAAATGGAACCTCAGGCATTAAGTCGAGGACCAAAT
66 ATTTTAACCAATTATAGAATCAAATAATCAAAATGGAACCTCAGGAATTAAGGCAAGGAACAAAT
* *
8066213 CGAATATTTC
131 CCAATATTCC
8066223 CCTAAATT
1 CCTAAATT
8066231 TAAAAGTTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
139 3 0.02
140 121 0.98
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (140 bp):
CCTAAATTAAAGGACTAAAAGTGAAATTAATCTAAAATAGAGACTCTAATCATTAACCCAAATCG
ATTTTAACCAATTATAGAATCAAATAATCAAAATGGAACCTCAGGAATTAAGGCAAGGAACAAAT
CCAATATTCC
Found at i:8066519 original size:30 final size:30
Alignment explanation
Indices: 8066453--8066531 Score: 78
Period size: 30 Copynumber: 2.7 Consensus size: 30
8066443 ATAAATATGG
*
8066453 AATTTAAAGA-ATATAAAA-TAAAAGGATTGA
1 AATTTAAA-ATATAAAAAATTAAAAGGA-TGA
8066483 AA-TTAAAATATAAAAAATTAAAAGGA-GAA
1 AATTTAAAATATAAAAAATTAAAAGGATG-A
8066512 AATTTAAAATA-ACAAAAATT
1 AATTTAAAATATA-AAAAATT
8066532 TGAAAGGCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
28 2 0.05
29 16 0.37
30 25 0.58
ACGTcount: A:0.65, C:0.01, G:0.09, T:0.25
Consensus pattern (30 bp):
AATTTAAAATATAAAAAATTAAAAGGATGA
Found at i:8066752 original size:15 final size:15
Alignment explanation
Indices: 8066732--8066766 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
8066722 TTAGAAAGGC
8066732 AGTAAGTTAGAAATT
1 AGTAAGTTAGAAATT
8066747 AGTAAGTTAGAAATT
1 AGTAAGTTAGAAATT
*
8066762 CGTAA
1 AGTAA
8066767 TTAATTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (15 bp):
AGTAAGTTAGAAATT
Found at i:8077705 original size:16 final size:16
Alignment explanation
Indices: 8077679--8077722 Score: 79
Period size: 16 Copynumber: 2.7 Consensus size: 16
8077669 ATTACAGCAT
8077679 ATATATTTGTATTATCG
1 ATAT-TTTGTATTATCG
8077696 ATATTTTGTATTATCG
1 ATATTTTGTATTATCG
8077712 ATATTTTGTAT
1 ATATTTTGTAT
8077723 CCTAACATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (16 bp):
ATATTTTGTATTATCG
Found at i:8079825 original size:386 final size:386
Alignment explanation
Indices: 8079091--8079874 Score: 1089
Period size: 386 Copynumber: 2.0 Consensus size: 386
8079081 ATGGATTTAT
*
8079091 ATTTTCTTTAGATGATTTGGGTATTTATTATTTGAGTTTAAAATTAATTAAATATTAAAATATTA
1 ATTTTCATTAGATGATTTGGGTATTTATTATTTGAGTTTAAAATTAATTAAATATTAAAATATTA
* * * * * *
8079156 ATGGATTGAAGCATAAAATTTATTGGTCATAATATTTTAAACGGTGGCGTTTGGGATGAGTATAA
66 ATAGATTGAAGCATAAAATTTATTGATCATAATATTTTAAACGGTGACATTTAGGATGAATATAA
*
8079221 GCGCATAAATGAAAAAATATAAATGAACGAACATAAACGAACAAATTATCAAATGTTCACGAACG
131 GCGCATAAATG-----A-ATAAA-GAACGAACATAAACGAACAAATTATCAAATGCTCACGAACG
* * * *
8079286 TAAATGAACGAATGAACCCTTTGTTCAAGTTTGTTCATTTAATTAAATGGACATAAAATATTGTC
189 TAAATGAACAAATGAACACTTTGTTCAAGTGTGTTCATTTAATTAAATGAACATAAAATATTGTC
8079351 AATGTTCGTTTGTTTAATAAATAAACAAACATAAATAAACTTCCCTCACTAAATGTGTCACACCC
254 AATGTTCGTTTGTTTAATAAATAAACAAACATAAATAAACTTCCCTCACTAAATGTGTCACACCC
8079416 CCGATTATAGGGCTAGAATTTTATTCGGCATATTGAGGACTAAAGTGGGACTTTTAAGAAATTTA
319 CCGATTATAGGGCTAGAATTTTATTCGGCATATTGAGGACTAAAGTGGGACTTTTAAGAAATTTA
8079481 GAA
384 GAA
* *
8079484 ATTTTCATTAGATGATTTGGGTATTTATTGTTTGAGTTTAAAATTAATTAAATTTTAAAATATTA
1 ATTTTCATTAGATGATTTGGGTATTTATTATTTGAGTTTAAAATTAATTAAATATTAAAATATTA
* * * *
8079549 ATAGATTTAAGGATAAAATTTATTGATTATAATGTTTTAAACGGGTCTGACATTTAGGATGAATA
66 ATAGATTGAAGCATAAAATTTATTGATCATAATATTTTAAAC-GG--TGACATTTAGGATGAATA
* * *
8079614 TAAAG-GCATAAATG-A-ACA-AACGAACATAAACGAATAAATTATCGAATGCTCA-GAAACGTA
128 T-AAGCGCATAAATGAATAAAGAACGAACATAAACGAACAAATTATCAAATGCTCACG-AACGTA
* * * *
8079674 AATGAACAAATGATCATTTTGTTCGAGTGTGTTCATTTAATTAAATGAACATAAAATCTTGTTC-
191 AATGAACAAATGAACACTTTGTTCAAGTGTGTTCATTTAATTAAATGAACATAAAATATTG-TCA
** *
8079738 ATAG-TCGTTTGTTTAATAAATAAACGGACATAAATAAATTTCCCTCACTAAAAT-TGTCACACC
255 AT-GTTCGTTTGTTTAATAAATAAACAAACATAAATAAACTTCCCTCACT-AAATGTGTCACACC
* * * *
8079801 CTCGATTATAGGGCTAGCATTTTATTCGGCATATTGAGGACTAAAGTGGGACTTTTAATAAGTTT
318 CCCGATTATAGGGCTAGAATTTTATTCGGCATATTGAGGACTAAAGTGGGACTTTTAAGAAATTT
8079866 AGAA
383 AGAA
8079870 ATTTT
1 ATTTT
8079875 TATGTGAATT
Statistics
Matches: 351, Mismatches: 32, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
385 1 0.00
386 213 0.61
387 7 0.02
388 2 0.01
389 1 0.00
393 98 0.28
394 2 0.01
396 24 0.07
397 3 0.01
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (386 bp):
ATTTTCATTAGATGATTTGGGTATTTATTATTTGAGTTTAAAATTAATTAAATATTAAAATATTA
ATAGATTGAAGCATAAAATTTATTGATCATAATATTTTAAACGGTGACATTTAGGATGAATATAA
GCGCATAAATGAATAAAGAACGAACATAAACGAACAAATTATCAAATGCTCACGAACGTAAATGA
ACAAATGAACACTTTGTTCAAGTGTGTTCATTTAATTAAATGAACATAAAATATTGTCAATGTTC
GTTTGTTTAATAAATAAACAAACATAAATAAACTTCCCTCACTAAATGTGTCACACCCCCGATTA
TAGGGCTAGAATTTTATTCGGCATATTGAGGACTAAAGTGGGACTTTTAAGAAATTTAGAA
Found at i:8081069 original size:31 final size:31
Alignment explanation
Indices: 8081034--8081101 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
8081024 TAAATTTTGA
* *
8081034 TCACTTACGTTATCATTTTATTAAGTTTTAG
1 TCACTTACATTATCATTTTATTAAGTGTTAG
* ** *
8081065 TCACTTATATTATTGTTTTATTAAGTGTTGG
1 TCACTTACATTATCATTTTATTAAGTGTTAG
8081096 TCACTT
1 TCACTT
8081102 GTATGTTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (31 bp):
TCACTTACATTATCATTTTATTAAGTGTTAG
Found at i:8081469 original size:24 final size:22
Alignment explanation
Indices: 8081416--8081472 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
8081406 TACCGTGAAA
*
8081416 TTGAGTAAATAAAATATTAATT
1 TTGAGTAAATAAAATAATAATT
* *
8081438 TATAAGTATAATAATATTAATAATT
1 T-TGAGTA-AATAA-AATAATAATT
8081463 TTGAGTAAAT
1 TTGAGTAAAT
8081473 TACAGATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
22 1 0.04
23 8 0.29
24 10 0.36
25 9 0.32
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
TTGAGTAAATAAAATAATAATT
Found at i:8082686 original size:13 final size:13
Alignment explanation
Indices: 8082668--8082693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8082658 ATGAATCAAG
8082668 AATAAACAAAACA
1 AATAAACAAAACA
8082681 AATAAACAAAACA
1 AATAAACAAAACA
8082694 GTTAATGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.15, G:0.00, T:0.08
Consensus pattern (13 bp):
AATAAACAAAACA
Found at i:8085872 original size:2 final size:2
Alignment explanation
Indices: 8085860--8085899 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8085850 TTGGTTAAAC
8085860 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8085900 CAATTTCGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8087774 original size:77 final size:77
Alignment explanation
Indices: 8087693--8087839 Score: 179
Period size: 76 Copynumber: 1.9 Consensus size: 77
8087683 TATATATAAG
* * * * * *
8087693 AAATACAATTGTGCCCAATAATGTCATTGTTCACTAAGAAA-TATATTGTGATAGGTAATGTTAA
1 AAATA-AATTGCGCCCAAGAATGTCATGGTTCACTAAGAAACCATATTGTAATAGGTAATCTTAA
8087757 TATTTTATTAATA
65 TATTTTATTAATA
** * * *
8087770 AAATAGGTTGCGCCCAAGAATGTCGTGGTTCACTAAGAAACCATGTTGTAATATGTAATCTTAAT
1 AAATAAATTGCGCCCAAGAATGTCATGGTTCACTAAGAAACCATATTGTAATAGGTAATCTTAAT
8087835 ATTTT
66 ATTTT
8087840 TAATCATAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
76 29 0.50
77 29 0.50
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (77 bp):
AAATAAATTGCGCCCAAGAATGTCATGGTTCACTAAGAAACCATATTGTAATAGGTAATCTTAAT
ATTTTATTAATA
Found at i:8087869 original size:77 final size:76
Alignment explanation
Indices: 8087712--8087869 Score: 165
Period size: 77 Copynumber: 2.1 Consensus size: 76
8087702 TGTGCCCAAT
* * * * *
8087712 AATGTCATTGTTCACTAAGAAATATATTGTGATAGGTAATGTTAATATTTTATTAATAAAATAGG
1 AATGTCATGGTTCACTAAGAAACATATTGTAATAGGTAATCTTAATATTTTAATAATAAAATAGG
** * *
8087777 TTGCGCCCAAG
66 TTAAGCCAAAA
* * * * *
8087788 AATGTCGTGGTTCACTAAGAAACCATGTTGTAATATGTAATCTTAATATTTTTAATCATAAAATG
1 AATGTCATGGTTCACTAAGAAA-CATATTGTAATAGGTAATCTTAATA-TTTTAATAATAAAATA
8087853 GGTTAAG-CAAAA
64 GGTTAAGCCAAAA
8087865 AATGT
1 AATGT
8087870 TATCAAAGTT
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
76 20 0.30
77 28 0.42
78 18 0.27
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.36
Consensus pattern (76 bp):
AATGTCATGGTTCACTAAGAAACATATTGTAATAGGTAATCTTAATATTTTAATAATAAAATAGG
TTAAGCCAAAA
Found at i:8088319 original size:26 final size:27
Alignment explanation
Indices: 8088290--8088348 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
8088280 AGATATGATC
*
8088290 AAAATTTAAAA-TATCTATAATTATAA
1 AAAATTTAAAAGTATCGATAATTATAA
** * *
8088316 AAAAACTAAAAGTATCGATATTTGTAA
1 AAAATTTAAAAGTATCGATAATTATAA
8088343 AAAATT
1 AAAATT
8088349 ACTATACTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAATTTAAAAGTATCGATAATTATAA
Found at i:8088320 original size:27 final size:27
Alignment explanation
Indices: 8088296--8088346 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
8088286 GATCAAAATT
*
8088296 TAAAA-TATCTATAATTATAAAAAAAC
1 TAAAAGTATCGATAATTATAAAAAAAC
* *
8088322 TAAAAGTATCGATATTTGTAAAAAA
1 TAAAAGTATCGATAATTATAAAAAA
8088347 TTACTATACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (27 bp):
TAAAAGTATCGATAATTATAAAAAAAC
Found at i:8088517 original size:20 final size:20
Alignment explanation
Indices: 8088478--8088547 Score: 113
Period size: 20 Copynumber: 3.4 Consensus size: 20
8088468 TTTAAATTCG
*
8088478 AAAGTATCGATATTTTTTTTGA
1 AAAGTATCCATA--TTTTTTGA
8088500 AAAGTATCCATATTTTTTGA
1 AAAGTATCCATATTTTTTGA
8088520 AAAGTATCCATATTTTTTGA
1 AAAGTATCCATATTTTTTGA
8088540 AAAGTATC
1 AAAGTATC
8088548 GATACTTTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 36 0.77
22 11 0.23
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (20 bp):
AAAGTATCCATATTTTTTGA
Found at i:8088877 original size:77 final size:77
Alignment explanation
Indices: 8088739--8088906 Score: 218
Period size: 77 Copynumber: 2.2 Consensus size: 77
8088729 ATATTCATAT
* *
8088739 TTTTA-TAATAAAAATATTAATATTCCAAATCACAACTTACTTTCTTAGTGAACCATAACATTCT
1 TTTTATTAATAAAAATATTAACATTCCAAATCACAACCTACTTTCTTAGTGAACCATAACATTC-
*
8088803 TTGGTGC-AACCCA
65 TTGG-ACAAACCCA
* *
8088816 TTTTATTAATAAAAATATTAACA-TCCTAGATCACAACCTA-TTTCTTAGTGAACCATGACATTC
1 TTTTATTAATAAAAATATTAACATTCC-AAATCACAACCTACTTTCTTAGTGAACCATAACATTC
*
8088879 TTGGACAAAACTCA
65 TTGGAC-AAACCCA
8088893 TTTTATTAATAAAA
1 TTTTATTAATAAAA
8088907 GTATCAGTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
75 1 0.01
76 4 0.05
77 49 0.60
78 27 0.33
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (77 bp):
TTTTATTAATAAAAATATTAACATTCCAAATCACAACCTACTTTCTTAGTGAACCATAACATTCT
TGGACAAACCCA
Found at i:8089180 original size:77 final size:77
Alignment explanation
Indices: 8089049--8089264 Score: 236
Period size: 77 Copynumber: 2.8 Consensus size: 77
8089039 AGGTGCACTC
* * * * *
8089049 CATTTTATTAACAAAAATATTAACATTTCATATCACAACCTATTTCTTAGTGAACCATGACATTC
1 CATTTTATTAATAAAAATATTAACATTTCAGATAACAACCTATTTATGAGTGAACCATGACATTC
*
8089114 TCAGGCGCAACT
66 TCAGGCACAACT
* * **
8089126 CATTTTATTAATAAAAGTATCAACATTTCAGATAACAACCTATTTATGCTTGAACCATGACATTC
1 CATTTTATTAATAAAAATATTAACATTTCAGATAACAACCTATTTATGAGTGAACCATGACATTC
** *
8089191 TTGGGCATAACT
66 TCAGGCACAACT
* *** * * *
8089203 TATTTTATTAATAAAAATATTAACA-TTCTAGATCGTAATCTATTTCTTAGTGAACCATGACA
1 CATTTTATTAATAAAAATATTAACATTTC-AGATAACAACCTATTTATGAGTGAACCATGACA
8089265 AGTTTAGGCG
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
76 3 0.03
77 111 0.97
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (77 bp):
CATTTTATTAATAAAAATATTAACATTTCAGATAACAACCTATTTATGAGTGAACCATGACATTC
TCAGGCACAACT
Found at i:8089649 original size:83 final size:83
Alignment explanation
Indices: 8089558--8089710 Score: 288
Period size: 83 Copynumber: 1.8 Consensus size: 83
8089548 CCCATACTAA
* *
8089558 ACTTAACATTCAATGGTACATTACATGACATTATTTGTTCAAAGATAACTCTCAACTATTTAATA
1 ACTTAACATTCAATGGTACATTACAAGACATTATTTGTTCAAAGATAACTCTAAACTATTTAATA
8089623 TTAAATGCTCATACTCCT
66 TTAAATGCTCATACTCCT
8089641 ACTTAACATTCAATGGTACATTACAAGACATTATTTGTTCAAAGATAACTCTAAACTATTTAATA
1 ACTTAACATTCAATGGTACATTACAAGACATTATTTGTTCAAAGATAACTCTAAACTATTTAATA
8089706 TTAAA
66 TTAAA
8089711 CACTCATATT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (83 bp):
ACTTAACATTCAATGGTACATTACAAGACATTATTTGTTCAAAGATAACTCTAAACTATTTAATA
TTAAATGCTCATACTCCT
Found at i:8096675 original size:42 final size:42
Alignment explanation
Indices: 8096585--8096747 Score: 206
Period size: 42 Copynumber: 3.8 Consensus size: 42
8096575 CTATACACCA
* * *
8096585 GTAAGGCTTAACCTGT-GCACAAAGCAGA-GGAGCCTAGGAAAACT
1 GTAAGGCTT-ACCT-TCGCACACAGCAAAGGGA-CCT-GGGAAACT
*
8096629 GTAAGGTTTACCTTCGCACACAGCAAAGGGACCTGGGAAACT
1 GTAAGGCTTACCTTCGCACACAGCAAAGGGACCTGGGAAACT
*
8096671 GTAAGGCTTATCCTT-GCACACAGCAAAGGGACCTGGTAAACT
1 GTAAGGCTTA-CCTTCGCACACAGCAAAGGGACCTGGGAAACT
*
8096713 ATAAGGCTTACCTTCGCACACAGCAAAGGGACCTG
1 GTAAGGCTTACCTTCGCACACAGCAAAGGGACCTG
8096748 ATAATACTTC
Statistics
Matches: 108, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
41 4 0.04
42 72 0.67
43 21 0.19
44 11 0.10
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (42 bp):
GTAAGGCTTACCTTCGCACACAGCAAAGGGACCTGGGAAACT
Found at i:8096728 original size:84 final size:86
Alignment explanation
Indices: 8096585--8096747 Score: 242
Period size: 84 Copynumber: 1.9 Consensus size: 86
8096575 CTATACACCA
* * *
8096585 GTAAGGCTTAACCTGTGCACAAAGCAGAGGAGCCTAGGAAAACTGTAAGGTTTACCTTCGCACAC
1 GTAAGGCTTAACCTGTGCACAAAGCAAAGGAGCCTAGGAAAACTATAAGGCTTACCTTCGCACAC
8096650 AGCAAAGGGACCTGGGAAACT
66 AGCAAAGGGACCTGGGAAACT
* * *
8096671 GTAAGGCTTATCCT-TGCACACAGCAAAGG-GACCT-GGTAAACTATAAGGCTTACCTTCGCACA
1 GTAAGGCTTAACCTGTGCACAAAGCAAAGGAG-CCTAGGAAAACTATAAGGCTTACCTTCGCACA
8096733 CAGCAAAGGGACCTG
65 CAGCAAAGGGACCTG
8096748 ATAATACTTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
84 41 0.59
85 16 0.23
86 13 0.19
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (86 bp):
GTAAGGCTTAACCTGTGCACAAAGCAAAGGAGCCTAGGAAAACTATAAGGCTTACCTTCGCACAC
AGCAAAGGGACCTGGGAAACT
Found at i:8097748 original size:29 final size:29
Alignment explanation
Indices: 8097686--8097811 Score: 137
Period size: 29 Copynumber: 4.3 Consensus size: 29
8097676 ATTTTACAGA
* * *
8097686 AATAGAACCCCTTTTCGAATTAATTACC-AA
1 AATAGCACCCATTTT-GAATTAATT-CCTAT
*
8097716 AATAGCACCCATTTTGAAATAATTCCTAT
1 AATAGCACCCATTTTGAATTAATTCCTAT
8097745 AATAGCACCCATTTTGAATTAATTCCTAT
1 AATAGCACCCATTTTGAATTAATTCCTAT
* * ** * *
8097774 AATAACACCAAAATTGAATTAATTCCCAG
1 AATAGCACCCATTTTGAATTAATTCCTAT
8097803 AATAGCACC
1 AATAGCACC
8097812 GGTCAACGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 2 0.02
29 68 0.82
30 13 0.16
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.30
Consensus pattern (29 bp):
AATAGCACCCATTTTGAATTAATTCCTAT
Found at i:8097864 original size:18 final size:18
Alignment explanation
Indices: 8097824--8097871 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
8097814 TCAACGATCA
8097824 ACGGG-CAAC-GGTAGGG
1 ACGGGTCAACGGGTAGGG
* *
8097840 TCGGGTCAACGGGTTGGG
1 ACGGGTCAACGGGTAGGG
8097858 ACGGGTCAACGGGT
1 ACGGGTCAACGGGT
8097872 CGGGTCGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 19 0.70
ACGTcount: A:0.19, C:0.19, G:0.48, T:0.15
Consensus pattern (18 bp):
ACGGGTCAACGGGTAGGG
Found at i:8104096 original size:42 final size:41
Alignment explanation
Indices: 8104005--8104251 Score: 325
Period size: 42 Copynumber: 5.8 Consensus size: 41
8103995 CTATACACCA
* * *
8104005 GTAAGGCTTAACCTGTGCACAAAGCAGAAGAG-CCTAGGAAAACT
1 GTAAGGCTT-ACCT-TGCACACAGCA-AAGGGACCT-GGGAAACT
* *
8104049 GTAAGGTTTATCCTTGCACACAGCAATGGGACCTGGGAAACT
1 GTAAGGCTTA-CCTTGCACACAGCAAAGGGACCTGGGAAACT
*
8104091 GTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGTAAACT
1 GTAAGGCTTA-CCTTGCACACAGCAAAGGGACCTGGGAAACT
8104133 GTAAGGCTTACCTTCGCACACAGCAAAGGGACCTGGGAAACT
1 GTAAGGCTTACCTT-GCACACAGCAAAGGGACCTGGGAAACT
* *
8104175 GTAAGGCTTACCCTTGCACACAGTAAAGGGACCTGGTAAACT
1 GTAAGGCTTA-CCTTGCACACAGCAAAGGGACCTGGGAAACT
*
8104217 GTAAGGCTTACCTTCGCACACAGCAAAGAGACCTG
1 GTAAGGCTTACCTT-GCACACAGCAAAGGGACCTG
8104252 ATAATACTTC
Statistics
Matches: 184, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
41 8 0.04
42 147 0.80
43 18 0.10
44 11 0.06
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.19
Consensus pattern (41 bp):
GTAAGGCTTACCTTGCACACAGCAAAGGGACCTGGGAAACT
Found at i:8104152 original size:84 final size:84
Alignment explanation
Indices: 8104005--8104251 Score: 372
Period size: 84 Copynumber: 2.9 Consensus size: 84
8103995 CTATACACCA
* * * * *
8104005 GTAAGGCTTAACCTGTGCACAAAGCAGAAGAG-CCTAGGAAAACTGTAAGGTTTATCCTT-GCAC
1 GTAAGGCTTACCCT-TGCACACAGCA-AAGGGACCT-GGTAAACTGTAAGGCTTA-CCTTCGCAC
*
8104068 ACAGCAATGGGACCTGGGAAACT
62 ACAGCAAAGGGACCTGGGAAACT
8104091 GTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGTAAACTGTAAGGCTTACCTTCGCACACAG
1 GTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGTAAACTGTAAGGCTTACCTTCGCACACAG
8104156 CAAAGGGACCTGGGAAACT
66 CAAAGGGACCTGGGAAACT
*
8104175 GTAAGGCTTACCCTTGCACACAGTAAAGGGACCTGGTAAACTGTAAGGCTTACCTTCGCACACAG
1 GTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGTAAACTGTAAGGCTTACCTTCGCACACAG
*
8104240 CAAAGAGACCTG
66 CAAAGGGACCTG
8104252 ATAATACTTC
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
83 4 0.03
84 121 0.80
85 13 0.09
86 13 0.09
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.19
Consensus pattern (84 bp):
GTAAGGCTTACCCTTGCACACAGCAAAGGGACCTGGTAAACTGTAAGGCTTACCTTCGCACACAG
CAAAGGGACCTGGGAAACT
Found at i:8105324 original size:18 final size:18
Alignment explanation
Indices: 8105303--8105345 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
8105293 TGTCAATGGC
8105303 CGGGTCGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
*
8105321 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACAGGT
8105339 CGGGTCG
1 CGGGTCG
8105346 TGACCGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.12, C:0.23, G:0.49, T:0.16
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:8107161 original size:84 final size:84
Alignment explanation
Indices: 8106925--8107431 Score: 491
Period size: 84 Copynumber: 6.1 Consensus size: 84
8106915 TGTGAAATAA
** * * *
8106925 AAACGCCGCAAAAAATCAAGATCTATAGCGGTGTTTTTGAAACAAACGTCGCAAAAGGTTAGATC
1 AAACGCCGCAAAAGGTC-AGATCTATAGCGGTGTTTTTG-AACAAACGCCGCAAAAGGTCATATC
* * ** *
8106990 TATAGTGACATTTTTATATAC
64 TATAGCGGCGGTTTTGTATAC
* * * * * * * *
8107011 AAAGGCCACAAAATGTTGAGATCTATAGCGGCGTTTTTTGATCAAACACCGCAAAAGGTCAGATC
1 AAACGCCGCAAAA-GGTCAGATCTATAGCGGTG-TTTTTGAACAAACGCCGCAAAAGGTCATATC
* *
8107076 TATAGCGGCGATTTTGTATAT
64 TATAGCGGCGGTTTTGTATAC
* * * *
8107097 AAACGCCGCAAAAGGTCAGATCTGTAGCGGTGTTTTTGAACAAATGTCGTAAAAGGTCATATCTA
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGTGTTTTTGAACAAACGCCGCAAAAGGTCATATCTA
*
8107162 TAGCGGCGGTTTTGTATAT
66 TAGCGGCGGTTTTGTATAC
* * *
8107181 AAACGCCGCAAAAGGTCAGATCTGTAGC----------AAAAAACGCCGCAAAAGCTCATATCTA
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGTGTTTTTGAACAAACGCCGCAAAAGGTCATATCTA
8107236 TAGCGGCGGTTTTGTATAC
66 TAGCGGCGGTTTTGTATAC
* * *
8107255 AAACGCCGCAAAAGGTCAGATCTATAGC-GTCGTTTTTTGAACAAACACCGCAAAAAGTCATATA
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGT-G-TTTTTGAACAAACGCCGCAAAAGGTCATATC
*
8107319 TATAGCGGCGGTTTT-AATAC
64 TATAGCGGCGGTTTTGTATAC
* * * * *
8107339 AAACGCCGTAAAAGGTTAGATCTATAGTGGTGTTTTTTATACAAACGCCGCAAAAGGTTATATCT
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGTGTTTTTGA-ACAAACGCCGCAAAAGGTCATATCT
* * * *
8107404 GTAGCAGCGTTTTTGGA-AC
65 ATAGCGGCGGTTTTGTATAC
8107423 AAACGCCGC
1 AAACGCCGC
8107432 TAATTACCAT
Statistics
Matches: 350, Mismatches: 55, Indels: 34
0.80 0.13 0.08
Matches are distributed among these distances:
74 67 0.19
83 6 0.02
84 145 0.41
85 53 0.15
86 72 0.21
87 7 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (84 bp):
AAACGCCGCAAAAGGTCAGATCTATAGCGGTGTTTTTGAACAAACGCCGCAAAAGGTCATATCTA
TAGCGGCGGTTTTGTATAC
Found at i:8107166 original size:41 final size:41
Alignment explanation
Indices: 8106925--8107431 Score: 386
Period size: 42 Copynumber: 12.2 Consensus size: 41
8106915 TGTGAAATAA
** *
8106925 AAACGCCGCAAAAAATCAAGATCTATAGCGGTGTTTTTGAAAC
1 AAACGCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTG-AAC
* * * * * *
8106968 AAACGTCGCAAAAGGTTAGATCTATAGTGACATTTTTATATAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTT-GA-AC
* * * * *
8107011 AAAGGCCACAAAATGTTGAGATCTATAGCGGCGTTTTTTGATC
1 AAACGCCGCAAAA-GGTCAGATCTATAGCGGCG-TTTTTGAAC
* * *
8107054 AAACACCGCAAAAGGTCAGATCTATAGCGGCGATTTTGTATAT
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTG-A-AC
* *
8107097 AAACGCCGCAAAAGGTCAGATCTGTAGCGGTGTTTTTGAAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGAAC
* * * * * *
8107138 AAATGTCGTAAAAGGTCATATCTATAGCGGCGGTTTTGTATAT
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTG-A-AC
* *
8107181 AAACGCCGCAAAAGGTCAGATCTGTA---GC-------AAA
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGAAC
* * *
8107212 AAACGCCGCAAAAGCTCATATCTATAGCGGCGGTTTTGTATAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTG-A-AC
*
8107255 AAACGCCGCAAAAGGTCAGATCTATAGCGTCGTTTTTTGAAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCG-TTTTTGAAC
* * * * * *
8107297 AAACACCGCAAAAAGTCATATATATAGCGGCGGTTTTAATAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGA-AC
* * * * *
8107339 AAACGCCGTAAAAGGTTAGATCTATAGTGGTGTTTTTTATAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGA-AC
* * * *
8107381 AAACGCCGCAAAAGGTTATATCTGTAGCAGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTT-GAAC
8107423 AAACGCCGC
1 AAACGCCGC
8107432 TAATTACCAT
Statistics
Matches: 363, Mismatches: 78, Indels: 47
0.74 0.16 0.10
Matches are distributed among these distances:
31 24 0.07
32 1 0.00
34 2 0.01
40 2 0.01
41 42 0.12
42 143 0.39
43 124 0.34
44 20 0.06
45 5 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGAAC
Found at i:8107216 original size:31 final size:31
Alignment explanation
Indices: 8107181--8107239 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8107171 TTTTGTATAT
* *
8107181 AAACGCCGCAAAAGGTCAGATCTGTAGCAAA
1 AAACGCCGCAAAAGCTCAGATCTATAGCAAA
*
8107212 AAACGCCGCAAAAGCTCATATCTATAGC
1 AAACGCCGCAAAAGCTCAGATCTATAGC
8107240 GGCGGTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.15
Consensus pattern (31 bp):
AAACGCCGCAAAAGCTCAGATCTATAGCAAA
Found at i:8107352 original size:158 final size:158
Alignment explanation
Indices: 8107054--8107361 Score: 440
Period size: 158 Copynumber: 1.9 Consensus size: 158
8107044 TTTTTTGATC
* *
8107054 AAACACCGCAAAAGGTCAGATCTATAGCGGCGATTTTGTATATAAACGCCGCAAAAGGTCAGATC
1 AAACACCGCAAAAGCTCAGATCTATAGCGGCGATTTTGTATACAAACGCCGCAAAAGGTCAGATC
* *** * * * * *
8107119 TGTAGCGGTGTTTTTGAACAAATGTCGTAAAAGGTCATATCTATAGCGGCGGTTTTGTATATAAA
66 TATAGCGGTGTTTTTGAACAAACACCGCAAAAAGTCATATATATAGCGGCGGTTTTGAATACAAA
8107184 CGCCGCAAAAGGTCAGATCTGTAGCAAA
131 CGCCGCAAAAGGTCAGATCTGTAGCAAA
* * *
8107212 AAACGCCGCAAAAGCTCATATCTATAGCGGCGGTTTTGTATACAAACGCCGCAAAAGGTCAGATC
1 AAACACCGCAAAAGCTCAGATCTATAGCGGCGATTTTGTATACAAACGCCGCAAAAGGTCAGATC
8107277 TATAGC-GTCGTTTTTTGAACAAACACCGCAAAAAGTCATATATATAGCGGCGGTTTT-AATACA
66 TATAGCGGT-G-TTTTTGAACAAACACCGCAAAAAGTCATATATATAGCGGCGGTTTTGAATACA
* *
8107340 AACGCCGTAAAAGGTTAGATCT
129 AACGCCGCAAAAGGTCAGATCT
8107362 ATAGTGGTGT
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
157 2 0.02
158 90 0.68
159 40 0.30
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (158 bp):
AAACACCGCAAAAGCTCAGATCTATAGCGGCGATTTTGTATACAAACGCCGCAAAAGGTCAGATC
TATAGCGGTGTTTTTGAACAAACACCGCAAAAAGTCATATATATAGCGGCGGTTTTGAATACAAA
CGCCGCAAAAGGTCAGATCTGTAGCAAA
Found at i:8111124 original size:41 final size:41
Alignment explanation
Indices: 8111070--8111423 Score: 410
Period size: 41 Copynumber: 8.7 Consensus size: 41
8111060 TTAAAATTGT
*
8111070 GGCGTTTGTA-AAAAACGCCACTAAAG-ACGAGTTTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * *
8111109 GGCATTTTTATAAAAACGCCACTAATGTACGAGTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
*
8111150 GGCGTTTGTACAAAAACGCCACTAAAGTACGAGTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
** * * * *
8111191 ATCGTTTGTTTAAAAACGCCACTAAAGTACCAGTTTTTAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* *
8111232 GGTGTTTGTATAAAAACGCCGCTAAAGTACGAGTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * * * *
8111273 AGCGTTTATATAAAAATGCCACTAAAGTACAAGTCTATAGT
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * * *
8111314 GGCGTTTGTATAAAAACGCCGCTAAAGTATTG-CTCTATCGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTA-CGAGTCTATAGC
* * * **
8111355 TGCGTTTTGTATAAAAACGCCACT-TAGTATGAGAATATAGC
1 GGCG-TTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
*
8111396 GGCGTTTGTATAAAAACGCCGCTAAAGT
1 GGCGTTTGTATAAAAACGCCACTAAAGT
8111424 TAGCATTTTG
Statistics
Matches: 260, Mismatches: 49, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
39 8 0.03
40 35 0.13
41 199 0.77
42 18 0.07
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (41 bp):
GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
Found at i:8112969 original size:12 final size:12
Alignment explanation
Indices: 8112952--8112983 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8112942 GATAGTCACT
8112952 AATGTTTGAGTA
1 AATGTTTGAGTA
8112964 AATGTTTGAGTA
1 AATGTTTGAGTA
8112976 AATGTTTG
1 AATGTTTG
8112984 TTTTTCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (12 bp):
AATGTTTGAGTA
Found at i:8115909 original size:2 final size:2
Alignment explanation
Indices: 8115904--8116243 Score: 124
Period size: 2 Copynumber: 180.5 Consensus size: 2
8115894 ATTATTTTGG
* * *
8115904 TA TA TA TA CTA TA TA GCA TA TA T- TA CA -A TA TT TA TA TA GTA
1 TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA
* *
8115945 TA TGA TA TA TA T- TA T- TA TA TA GTA -A AA TA TG T- TA TA -A TA
1 TA T-A TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* ** *
8115984 TG TA CTA TA TA T- TA GTA T- TA TA TCA CG TA T- TA TA TA TG T-
1 TA TA -TA TA TA TA TA -TA TA TA TA T-A TA TA TA TA TA TA TA TA
*
8116023 TA TA GTA TA T- TA T- TA T- TA TA TA TA GTA TG T- TA TA TA GTA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA
8116062 TA TA TA T- TA TA -A TA -A TA TA GTA TA TA T- TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
8116100 T- TA TA T- TA TCA TA GTA TA TA -A T- TA TA TA TA T- TA TG TA TA
1 TA TA TA TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
8116139 T- TA TT TA TG TA CA TA T- TA TA TA GTA TA TA TA TA TG TT TA GTA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA
*
8116181 TA TA T- TA T- TA TA TA TA TA T- TG TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8116219 TA T- TA T- TA T- TA TA T- TA -A TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8116244 TTAATTTTAT
Statistics
Matches: 258, Mismatches: 27, Indels: 106
0.66 0.07 0.27
Matches are distributed among these distances:
1 37 0.14
2 191 0.74
3 30 0.12
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8116070 original size:73 final size:73
Alignment explanation
Indices: 8115936--8116232 Score: 235
Period size: 73 Copynumber: 4.0 Consensus size: 73
8115926 TTACAATATT
* *
8115936 TATATAGTATATG--ATA-TATATTATTA-TATAGTAAAATATGTTATAATATGTACTATATATT
1 TATATA-TATATGTTATAGTATATTATTATTATAGT-ATATATGTTAT-ATATGTATTATATATT
8115997 AGTATTATATCACG
63 A-TATTATAT-A-G
8116011 TAT-TATATATGTTATAGTATATTATTATTATA-TATAGTATGTTATATA-GTA-TATATATTAT
1 TATATATATATGTTATAGTATATTATTATTATAGTATA-TATGTTATATATGTATTATATATTAT
*
8116072 AATAATATAG
65 -ATTATATAG
* * * *
8116082 TATATAT-TATATTATA-TAT-TATATTATCATAGTATATAATTATATATATTATGTATATTATT
1 TATATATATATGTTATAGTATAT-TATTATTATAGTATAT-A-TGT-TATA-TATG--TATTATA
8116144 TATGTACATATTATATAG
59 TAT-T--ATATTATATAG
*
8116162 TATATATATATGTT-TAGTATA-TATTATTATA-TATATATTGTATATATATATATTATATATTA
1 TATATATATATGTTATAGTATATTATTATTATAGTATATA-TGT-TATATATGTATTATATATTA
8116224 TTATTATAT
64 -TATTATAT
8116233 TAATATTATA
Statistics
Matches: 186, Mismatches: 12, Indels: 50
0.75 0.05 0.20
Matches are distributed among these distances:
69 1 0.01
70 13 0.07
71 17 0.09
72 8 0.04
73 33 0.18
74 8 0.04
75 21 0.11
76 19 0.10
77 9 0.05
78 15 0.08
79 6 0.03
80 26 0.14
81 10 0.05
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (73 bp):
TATATATATATGTTATAGTATATTATTATTATAGTATATATGTTATATATGTATTATATATTATA
TTATATAG
Found at i:8116167 original size:80 final size:82
Alignment explanation
Indices: 8116076--8116225 Score: 202
Period size: 80 Copynumber: 1.9 Consensus size: 82
8116066 TATTATAATA
*
8116076 ATATAGTATATATTATAT-TATA-TATTATATTATCATAGTATATAAT-TATATATAT-TA-TGT
1 ATATAGTATATA-TATATGTATAGTA-TATATTATCATA-TATATAATGTATATATATATATTAT
8116136 ATATTATTTATGTACATATT
63 ATATTATTTATGTACATATT
* * *
8116156 ATATAGTATATATATATGTTTAGTATATATTATTATATATATATTGTATATATATATATTATATA
1 ATATAGTATATATATATGTATAGTATATATTATCATATATATAATGTATATATATATATTATATA
8116221 TTATT
66 TTATT
8116226 ATTATATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
79 12 0.20
80 35 0.57
81 4 0.07
82 10 0.16
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.53
Consensus pattern (82 bp):
ATATAGTATATATATATGTATAGTATATATTATCATATATATAATGTATATATATATATTATATA
TTATTTATGTACATATT
Found at i:8116170 original size:31 final size:31
Alignment explanation
Indices: 8116028--8116234 Score: 134
Period size: 29 Copynumber: 6.7 Consensus size: 31
8116018 TATGTTATAG
*
8116028 TATATTAT-TATTATATATAGTATGTTA--TA
1 TATATTATATATTATATATATTAT-TTATGTA
*
8116057 TAGTA-TATATATTATA-ATA--ATATA-GTA
1 TA-TATTATATATTATATATATTATTTATGTA
*
8116084 TATATTATAT-TATATATTATATTA-TCATAGTA
1 TATATTATATAT-TATA-TATATTATTTAT-GTA
*
8116116 TATAATTATATATATTATGTATATTATTTATGTA
1 TAT-A-T-TATATATTATATATATTATTTATGTA
* * *
8116150 CATATTATATAGTATATATATATGTTTA-GTA
1 TATATTATATATTATATATAT-TATTTATGTA
* * *
8116181 TATATTAT-TA-TATATATATTGTATATATA
1 TATATTATATATTATATATATTATTTATGTA
8116210 TATATTATATATTATTATTATATTA
1 TATATTATATATTA-TA-TATATTA
8116235 ATATTATATT
Statistics
Matches: 143, Mismatches: 13, Indels: 40
0.73 0.07 0.20
Matches are distributed among these distances:
26 5 0.03
27 15 0.10
28 5 0.03
29 30 0.21
30 14 0.10
31 27 0.19
32 14 0.10
33 8 0.06
34 13 0.09
35 11 0.08
36 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (31 bp):
TATATTATATATTATATATATTATTTATGTA
Found at i:8117399 original size:16 final size:17
Alignment explanation
Indices: 8117365--8117406 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
8117355 TTAATTTAAA
*
8117365 AATTTATTTTTATTCTTT
1 AATTTA-TTTAATTCTTT
8117383 AATTTATTTAATT-TTT
1 AATTTATTTAATTCTTT
*
8117399 ATTTTATT
1 AATTTATT
8117407 ATTTACTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 10 0.45
17 6 0.27
18 6 0.27
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
AATTTATTTAATTCTTT
Found at i:8127276 original size:24 final size:23
Alignment explanation
Indices: 8127249--8127333 Score: 98
Period size: 24 Copynumber: 3.6 Consensus size: 23
8127239 TCCGATTTGA
*
8127249 ATTCTGTTATGATATCTGACCTAG
1 ATTCTGTTATGATATCTGATCT-G
* * *
8127273 ATTCTGTTCTGATTTCTTATCTGG
1 ATTCTGTTATGATATCTGATCT-G
8127297 ATTCTGTTATGATATCTGATCTG
1 ATTCTGTTATGATATCTGATCTG
*
8127320 AATTCTGTTTTGAT
1 -ATTCTGTTATGAT
8127334 TTCTAATATC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
23 1 0.02
24 50 0.98
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.49
Consensus pattern (23 bp):
ATTCTGTTATGATATCTGATCTG
Found at i:8127288 original size:48 final size:48
Alignment explanation
Indices: 8127232--8127336 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
8127222 GAATATTTTA
*
8127232 TCTGATTTCCGATTTGAATTCTGTTATGATATCTGACCT-AGATTCTGT
1 TCTGATTTCCGATCTGAATTCTGTTATGATATCTGACCTGA-ATTCTGT
** * *
8127280 TCTGATTTCTTATCTGGATTCTGTTATGATATCTGATCTGAATTCTGT
1 TCTGATTTCCGATCTGAATTCTGTTATGATATCTGACCTGAATTCTGT
*
8127328 TTTGATTTC
1 TCTGATTTC
8127337 TAATATCTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 49 0.98
49 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50
Consensus pattern (48 bp):
TCTGATTTCCGATCTGAATTCTGTTATGATATCTGACCTGAATTCTGT
Found at i:8127289 original size:12 final size:12
Alignment explanation
Indices: 8127274--8127337 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
8127264 CTGACCTAGA
8127274 TTCTGTTCTGAT
1 TTCTGTTCTGAT
8127286 TTCT-TATCTGGA-
1 TTCTGT-TCT-GAT
*
8127298 TTCTGTTATGAT
1 TTCTGTTCTGAT
* * *
8127310 ATCTGATCTGAA
1 TTCTGTTCTGAT
*
8127322 TTCTGTTTTGAT
1 TTCTGTTCTGAT
8127334 TTCT
1 TTCT
8127338 AATATCTCCG
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
11 3 0.08
12 33 0.85
13 3 0.08
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.55
Consensus pattern (12 bp):
TTCTGTTCTGAT
Found at i:8131936 original size:24 final size:24
Alignment explanation
Indices: 8131844--8131937 Score: 75
Period size: 24 Copynumber: 3.9 Consensus size: 24
8131834 GAATGTTTTA
* * * *
8131844 TCTGATTTCCGATTTGAATTATGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
8131868 TATGATA-CATGACCTGGATTCTGT
1 TCTGATATC-TGATCTGAATTCTGT
* *
8131892 TCTGATTTCTGAT-TTAGATTCTGT
1 TCTGATATCTGATCTGA-ATTCTGT
8131916 TCTGATATCTGATCTGAATTCT
1 TCTGATATCTGATCTGAATTCT
8131938 ATTTTAATTC
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
23 2 0.04
24 47 0.90
25 3 0.06
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (24 bp):
TCTGATATCTGATCTGAATTCTGT
Found at i:8131937 original size:48 final size:48
Alignment explanation
Indices: 8131844--8131937 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
8131834 GAATGTTTTA
*
8131844 TCTGATTTCCGATTTGAATTATGTTATGATACATGACCTGGATTCTGT
1 TCTGATTTCCGATTTGAATTATGTTATGATACATGACCTGAATTCTGT
* * * *
8131892 TCTGATTTCTGATTT-AGATTCTGTTCTGATATC-TGATCTGAATTCT
1 TCTGATTTCCGATTTGA-ATTATGTTATGATA-CATGACCTGAATTCT
8131938 ATTTTAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
47 1 0.03
48 37 0.95
49 1 0.03
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (48 bp):
TCTGATTTCCGATTTGAATTATGTTATGATACATGACCTGAATTCTGT
Found at i:8132936 original size:2 final size:2
Alignment explanation
Indices: 8132929--8132954 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8132919 CTCCTCTCGC
8132929 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8132955 TTCCCCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8144150 original size:7 final size:8
Alignment explanation
Indices: 8144124--8144149 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8144114 GGGAATTAAG
8144124 AAAGGGGA
1 AAAGGGGA
8144132 AAAGGGGA
1 AAAGGGGA
8144140 AAAGGGGA
1 AAAGGGGA
8144148 AA
1 AA
8144150 GTTAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (8 bp):
AAAGGGGA
Found at i:8144565 original size:46 final size:46
Alignment explanation
Indices: 8144492--8144961 Score: 593
Period size: 46 Copynumber: 10.2 Consensus size: 46
8144482 AAATGAATGA
* *
8144492 ATAAATAAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGAC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* * *
8144538 ATAAATGAAAATGCATAACGATACATTATTGGCATGAAAGGATGCA
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
** * * *
8144584 ATAAATGAAAATGCATAATAGTGCATCATCGGCATGAAAAGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* *
8144630 ATAAATG-AAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* *
8144675 ATAAATGAAAATGCATAA-GGATGCATTATTGGCATGAAATGATACC
1 ATAAATGAAAATGCATAACGG-TGCATTATTGGCATGAAAGGATGCC
* * * *
8144721 ATAAATGAAAATACATAACGGTACATTATCGACATGAAAGGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* *
8144767 ATAAATGAAAATGCATAACGGTGCATTATCGGCATAAAAGGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* **
8144813 ATAAATGAAAATGTATAACGGTGCATTATTGGCATGAAATAATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* * * *
8144859 ATAAATGAACATGAATAATGGTGCATTATTGGCATGAAAGGATTCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
* * * * * * *
8144905 ATAAATGAACATGAAAAATGGTTCATAATTGGCATGAAAGAAATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAG-GATGCC
*
8144952 ACAAATGAAA
1 ATAAATGAAA
8144962 TTACTTAACG
Statistics
Matches: 370, Mismatches: 50, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
45 42 0.11
46 314 0.85
47 14 0.04
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.24
Consensus pattern (46 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
Found at i:8144813 original size:183 final size:184
Alignment explanation
Indices: 8144492--8144913 Score: 618
Period size: 183 Copynumber: 2.3 Consensus size: 184
8144482 AAATGAATGA
* *
8144492 ATAAATAAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGA-CATAAATGAAAATGCATAA
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGAT-ACCATAAATGAAAATACATAA
* * *
8144556 CGATACATTATTGGCATGAAAGGATGCAATAAATGAAAATGCATAATAGTGCATCATCGGCATGA
65 CGATACATTATCGACATGAAAGGATGCAATAAATGAAAATGCATAACAGTGCATCATCGGCATGA
*
8144621 AAAGATGCCATAAATG-AAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
130 AAAGATGCCATAAATGAAAATGCATAACGGTGCATTATCGACATGAAAGAATGCC
*
8144675 ATAAATGAAAATGCATAA-GGATGCATTATTGGCATGAAATGATACCATAAATGAAAATACATAA
1 ATAAATGAAAATGCATAACGG-TGCATTATTGGCATGAAAGGATACCATAAATGAAAATACATAA
* * * *
8144739 CGGTACATTATCGACATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATCGGCAT-A
65 CGATACATTATCGACATGAAAGGATGCAATAAATGAAAATGCATAACAGTGCATCATCGGCATGA
* * * *
8144803 AAAGGATGCCATAAATGAAAATGTATAACGGTGCATTATTGGCATGAAATAATGCC
130 AAA-GATGCCATAAATGAAAATGCATAACGGTGCATTATCGACATGAAAGAATGCC
* * * *
8144859 ATAAATGAACATGAATAATGGTGCATTATTGGCATGAAAGGATTCCATAAATGAA
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATACCATAAATGAA
8144914 CATGAAAAAT
Statistics
Matches: 215, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
182 7 0.03
183 125 0.58
184 81 0.38
185 2 0.01
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (184 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATACCATAAATGAAAATACATAAC
GATACATTATCGACATGAAAGGATGCAATAAATGAAAATGCATAACAGTGCATCATCGGCATGAA
AAGATGCCATAAATGAAAATGCATAACGGTGCATTATCGACATGAAAGAATGCC
Found at i:8144894 original size:23 final size:23
Alignment explanation
Indices: 8144827--8144896 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 23
8144817 ATGAAAATGT
*
8144827 ATAACGGTGCATTATTGGCATGAA
1 ATAATGGTGCATTATTGGCATG-A
* * * *
8144851 ATAAT-G-CCATAAATGAACATGA
1 ATAATGGTGCATTATTG-GCATGA
8144873 ATAATGGTGCATTATTGGCATGA
1 ATAATGGTGCATTATTGGCATGA
8144896 A
1 A
8144897 AGGATTCCAT
Statistics
Matches: 34, Mismatches: 9, Indels: 7
0.68 0.18 0.14
Matches are distributed among these distances:
22 12 0.35
23 12 0.35
24 10 0.29
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (23 bp):
ATAATGGTGCATTATTGGCATGA
Found at i:8149909 original size:46 final size:46
Alignment explanation
Indices: 8149858--8150346 Score: 563
Period size: 46 Copynumber: 10.6 Consensus size: 46
8149848 AAATGAATAA
* * *
8149858 ATAAATGAAAATGCATAAATGTGCATTATTGGCATGAAAGGATACC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
8149904 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
* *
8149950 ATAAATGAAAATGCATAACGGTGCATTATCGGTATGAAAGGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
* * * * * *
8149996 ATAAATGAAAATACACAACGGTTCATTATTGGCATGAAATGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
* *
8150042 ATAAATGAAAATGCATAACA-GTGCATTATCGGCATGAAAGGTTACC
1 ATAAATGAAAATGCATAA-AGGTGCATTATCGGCATGAAAGGATGCC
* *
8150088 ATAAATGAAAATGCATAACGGTGCATTATTGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
* *
8150134 AAAAATGAAAATGCATAACA-GTGCATTATCAGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAA-AGGTGCATTATCGGCATGAAAGGATGCC
* **
8150180 ATAAATGAAAATGCATAACGGTGCATTATCGGCATGAAATAATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
* * * * * *
8150226 ATAAATGAATATGAATAACA--TACCATTATTGGAATGAAAGGATTCC
1 ATAAATGAAAATGCATAA-AGGT-GCATTATCGGCATGAAAGGATGCC
* * * * * * *
8150272 ATAAATGAACATGAATAACGATGCATAATTGGCATGAAAGAAATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAG-GATGCC
* * * * *
8150319 ATATATGAAATTACATAACGGTGTATTA
1 ATAAATGAAAATGCATAAAGGTGCATTA
8150347 AAGGTATATA
Statistics
Matches: 378, Mismatches: 56, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
45 1 0.00
46 352 0.93
47 25 0.07
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.25
Consensus pattern (46 bp):
ATAAATGAAAATGCATAAAGGTGCATTATCGGCATGAAAGGATGCC
Found at i:8149961 original size:92 final size:92
Alignment explanation
Indices: 8149858--8150346 Score: 640
Period size: 92 Copynumber: 5.3 Consensus size: 92
8149848 AAATGAATAA
*
8149858 ATAAATGAAAATGCATAA-ATGTGCATTATTGGCATGAAAGGATACCATAAATGAAAATGCATAA
1 ATAAATGAAAATGCATAACA-GTGCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAA
* *
8149922 AGGTGCATTATCGGCATGAAAGGATGCC
65 CGGTGCATTATTGGCATGAAAGGATGCC
* * * * *
8149950 ATAAATGAAAATGCATAACGGTGCATTATCGGTATGAAAGGATGCCATAAATGAAAATACACAAC
1 ATAAATGAAAATGCATAACAGTGCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAAC
* *
8150015 GGTTCATTATTGGCATGAAATGATGCC
66 GGTGCATTATTGGCATGAAAGGATGCC
*
8150042 ATAAATGAAAATGCATAACAGTGCATTATCGGCATGAAAGGTTACCATAAATGAAAATGCATAAC
1 ATAAATGAAAATGCATAACAGTGCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAAC
8150107 GGTGCATTATTGGCATGAAAGGATGCC
66 GGTGCATTATTGGCATGAAAGGATGCC
* * *
8150134 AAAAATGAAAATGCATAACAGTGCATTATCAGCATGAAAGGATGCCATAAATGAAAATGCATAAC
1 ATAAATGAAAATGCATAACAGTGCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAAC
* **
8150199 GGTGCATTATCGGCATGAAATAATGCC
66 GGTGCATTATTGGCATGAAAGGATGCC
* * * * * * * *
8150226 ATAAATGAATATGAATAACA-TACCATTATTGGAATGAAAGGATTCCATAAATGAACATGAATAA
1 ATAAATGAAAATGCATAACAGT-GCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAA
* * *
8150290 CGATGCATAATTGGCATGAAAGAAATGCC
65 CGGTGCATTATTGGCATGAAAG-GATGCC
* * * * *
8150319 ATATATGAAATTACATAACGGTGTATTA
1 ATAAATGAAAATGCATAACAGTGCATTA
8150347 AAGGTATATA
Statistics
Matches: 346, Mismatches: 47, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
91 1 0.00
92 320 0.92
93 24 0.07
94 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.25
Consensus pattern (92 bp):
ATAAATGAAAATGCATAACAGTGCATTATCGGCATGAAAGGATACCATAAATGAAAATGCATAAC
GGTGCATTATTGGCATGAAAGGATGCC
Found at i:8152101 original size:76 final size:76
Alignment explanation
Indices: 8151984--8152134 Score: 207
Period size: 76 Copynumber: 2.0 Consensus size: 76
8151974 GGAGTCGGAA
* * *
8151984 TATCACAACTACCATCCCACACTCTAGATTAATTGCAGCAT-A-TATTCTATCCCTGAGTTAGTA
1 TATCACAACTACCATCCCACACTCTAGATGAATTGCAGCATAAGT-TTC-ATCCCTAAGCTAGTA
*
8152047 GGTAGAGTCATCC
64 GGTAGAATCATCC
* * *
8152060 TATCACAACTACCATCCTACCCTCTAGATGAATTGGAGCATAAGTTTCATCCCTAAGCTAGTAGG
1 TATCACAACTACCATCCCACACTCTAGATGAATTGCAGCATAAGTTTCATCCCTAAGCTAGTAGG
8152125 TAGAATCATC
66 TAGAATCATC
8152135 TCATGACAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
76 61 0.92
77 4 0.06
78 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (76 bp):
TATCACAACTACCATCCCACACTCTAGATGAATTGCAGCATAAGTTTCATCCCTAAGCTAGTAGG
TAGAATCATCC
Found at i:8158751 original size:10 final size:11
Alignment explanation
Indices: 8158729--8158756 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8158719 CTAAAATCAC
8158729 TTAAAATATTT
1 TTAAAATATTT
8158740 TTAAAATATTT
1 TTAAAATATTT
8158751 TTAAAA
1 TTAAAA
8158757 CCAAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:8167214 original size:12 final size:12
Alignment explanation
Indices: 8167197--8167221 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8167187 AGGAATCTAC
8167197 ATTCCGTCGTTT
1 ATTCCGTCGTTT
8167209 ATTCCGTCGTTT
1 ATTCCGTCGTTT
8167221 A
1 A
8167222 GTTGGCTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTCCGTCGTTT
Found at i:8167775 original size:18 final size:19
Alignment explanation
Indices: 8167752--8167795 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
8167742 TCAATAATTC
*
8167752 TATTCC-CTGGTAATCTTT
1 TATTCCACTGGTAATCTTA
8167770 TATTCCCACTGGTAATCTTA
1 TATT-CCACTGGTAATCTTA
8167790 TATTCC
1 TATTCC
8167796 GTGAACCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 15 0.65
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.45
Consensus pattern (19 bp):
TATTCCACTGGTAATCTTA
Found at i:8167783 original size:20 final size:20
Alignment explanation
Indices: 8167758--8167795 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8167748 ATTCTATTCC
*
8167758 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTATATTCCCA
8167778 CTGGTAATCTTATATTCC
1 CTGGTAATCTTATATTCC
8167796 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.45
Consensus pattern (20 bp):
CTGGTAATCTTATATTCCCA
Found at i:8168159 original size:3 final size:3
Alignment explanation
Indices: 8168146--8168280 Score: 63
Period size: 3 Copynumber: 42.0 Consensus size: 3
8168136 TTTTAACATT
* * * *
8168146 TAA TTA TAA TAA TAA TTAG TAA TAA TAA CTAA TTA TAG TAAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA
* * * * *
8168194 TAA TAA TTAA TGA TAA TAA TAT TGA TAAA TAA TTAA TAA TTAA TAG TAG
1 TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TAA -TAA TAA TAA
* * * * *
8168243 TAAA TAA TAT TTA TAA TTAT TAA TAA TAT TTA TAA TAA
1 T-AA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
8168281 CTTAAACAAA
Statistics
Matches: 97, Mismatches: 26, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
3 75 0.77
4 22 0.23
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:8168170 original size:13 final size:13
Alignment explanation
Indices: 8168146--8168238 Score: 82
Period size: 13 Copynumber: 7.2 Consensus size: 13
8168136 TTTTAACATT
8168146 TAATT-ATAATAA
1 TAATTAATAATAA
*
8168158 TAATTAGTAATAA
1 TAATTAATAATAA
* * *
8168171 TAACTAATTATAG
1 TAATTAATAATAA
*
8168184 TAAATAATAATAA
1 TAATTAATAATAA
*
8168197 TAATTAATGATAA
1 TAATTAATAATAA
* *
8168210 TAA-TATTGATAAA
1 TAATTAATAAT-AA
8168223 TAATTAATAATTAA
1 TAATTAATAA-TAA
8168237 TA
1 TA
8168239 GTAGTAAATA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
12 11 0.17
13 44 0.69
14 8 0.12
15 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (13 bp):
TAATTAATAATAA
Found at i:8168236 original size:33 final size:36
Alignment explanation
Indices: 8168187--8168269 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
8168177 ATTATAGTAA
8168187 ATAATAA-TAATAATTAAT-G-A-T-AATAATATTG
1 ATAATAATTAATAATTAATAGTAGTAAATAATATTG
*
8168218 ATAAATAATTAATAATTAATAGTAGTAAATAATATTT
1 AT-AATAATTAATAATTAATAGTAGTAAATAATATTG
*
8168255 ATAATTATTAATAAT
1 ATAATAATTAATAAT
8168270 ATTTATAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
31 2 0.05
32 5 0.11
33 11 0.25
34 1 0.02
35 1 0.02
36 13 0.30
37 11 0.25
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (36 bp):
ATAATAATTAATAATTAATAGTAGTAAATAATATTG
Found at i:8168259 original size:59 final size:56
Alignment explanation
Indices: 8168168--8168285 Score: 141
Period size: 59 Copynumber: 2.1 Consensus size: 56
8168158 TAATTAGTAA
8168168 TAATAACTAATTATAGTAAATAATAATAATAATTAATGATAATAATATTGATAAATAA-T
1 TAATAACTAATTATAGTAAATAATAATAATAATT-AT--TAATAATATTGAT-AATAACT
* * * *
8168227 TAATAATTAA-TAGTAGTAAATAATATTTATAATTATTAATAATATTTATAATAACT
1 TAATAACTAATTA-TAGTAAATAATAATAATAATTATTAATAATATTGATAATAACT
8168283 TAA
1 TAA
8168286 ACAAAAACAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
55 5 0.09
56 16 0.30
58 4 0.08
59 28 0.53
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (56 bp):
TAATAACTAATTATAGTAAATAATAATAATAATTATTAATAATATTGATAATAACT
Found at i:8170530 original size:13 final size:12
Alignment explanation
Indices: 8170498--8170530 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
8170488 GATGCTGAGA
8170498 TAAAAAACAATT
1 TAAAAAACAATT
8170510 TAAAAAACAATT
1 TAAAAAACAATT
8170522 TAAAGAAAC
1 TAAA-AAAC
8170531 CTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (12 bp):
TAAAAAACAATT
Found at i:8171740 original size:3 final size:3
Alignment explanation
Indices: 8171734--8171759 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8171724 CACCACCACT
8171734 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
8171760 AAATTGGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:8175637 original size:21 final size:21
Alignment explanation
Indices: 8175611--8175655 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
8175601 TCCAGATTCA
8175611 CAACACGAACATCGACTATCG
1 CAACACGAACATCGACTATCG
8175632 CAACACGAACATCGACTATCG
1 CAACACGAACATCGACTATCG
8175653 CAA
1 CAA
8175656 TGCGATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.33, G:0.13, T:0.13
Consensus pattern (21 bp):
CAACACGAACATCGACTATCG
Found at i:8175698 original size:21 final size:20
Alignment explanation
Indices: 8175672--8175909 Score: 171
Period size: 21 Copynumber: 11.4 Consensus size: 20
8175662 TTTCTAAATT
*
8175672 CGTTGCGATAGTCTAAGTTC
1 CGTTGCGATAGTCCAAGTTC
* *
8175692 GCGTTGCGATTTATTCCAAATT-
1 -CGTTGCGA--TAGTCCAAGTTC
*
8175714 CGTTGCGATAGTTCAAGTTC
1 CGTTGCGATAGTCCAAGTTC
8175734 GCGTTGCGATAGTCCAAGTT-
1 -CGTTGCGATAGTCCAAGTTC
*
8175754 CGTTGCGATAGTCGAAGTTC
1 CGTTGCGATAGTCCAAGTTC
* *
8175774 ACGTTGCGATTTATTCCAAATT-
1 -CGTTGCGA--TAGTCCAAGTTC
* * *
8175796 CGTCGCGATAGTCGAAGATC
1 CGTTGCGATAGTCCAAGTTC
* * *
8175816 GCGTTGCGATTTATTTCAAATT-
1 -CGTTGCGA--TAGTCCAAGTTC
8175838 CGTTGCGATAGTCCAAGTTC
1 CGTTGCGATAGTCCAAGTTC
* *
8175858 GCGTTGCGATTTATTCTAAGTT-
1 -CGTTGCGA--TAGTCCAAGTTC
*
8175880 CGTTGCGATAGTCGAAGTTC
1 CGTTGCGATAGTCCAAGTTC
8175900 GCGTTGCGAT
1 -CGTTGCGAT
8175910 TTATTCCAAA
Statistics
Matches: 170, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
19 50 0.29
21 89 0.52
23 31 0.18
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCCAAGTTC
Found at i:8175716 original size:42 final size:42
Alignment explanation
Indices: 8175667--8175934 Score: 407
Period size: 42 Copynumber: 6.4 Consensus size: 42
8175657 GCGATTTTCT
*
8175667 AAATTCGTTGCGATAGTCTAAGTTCGCGTTGCGATTTATTCC
1 AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
*
8175709 AAATTCGTTGCGATAGTTC-AAGTTCGCGTTGCGA--TAGTCC
1 AAATTCGTTGCGATAG-TCGAAGTTCGCGTTGCGATTTATTCC
* *
8175749 AAGTTCGTTGCGATAGTCGAAGTTCACGTTGCGATTTATTCC
1 AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
* * *
8175791 AAATTCGTCGCGATAGTCGAAGATCGCGTTGCGATTTATTTC
1 AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
* *
8175833 AAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCT
1 AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
*
8175875 AAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
1 AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
*
8175917 AAATTCGTTGTGATAGTC
1 AAATTCGTTGCGATAGTC
8175935 AAAAATCGCA
Statistics
Matches: 203, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 34 0.17
42 165 0.81
43 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
AAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
Found at i:8175925 original size:21 final size:19
Alignment explanation
Indices: 8175656--8175931 Score: 140
Period size: 21 Copynumber: 13.4 Consensus size: 19
8175646 ACTATCGCAA
* * *
8175656 TGCGATTTTCTAAATTCGT
1 TGCGATATTCCAAGTTCGT
* *
8175675 TGCGATAGTCTAAGTTCGCGT
1 TGCGATATTCCAAGTT--CGT
*
8175696 TGCGATTTATTCCAAATTCGT
1 TGCGA--TATTCCAAGTTCGT
8175717 TGCGATAGTT-CAAGTTCGCGT
1 TGCGATA-TTCCAAGTT--CGT
*
8175738 TGCGATAGTCCAAGTTCGT
1 TGCGATATTCCAAGTTCGT
* *
8175757 TGCGATAGTCGAAGTTCACGT
1 TGCGATATTCCAAGTT--CGT
*
8175778 TGCGATTTATTCCAAATTCGT
1 TGCGA--TATTCCAAGTTCGT
* * * *
8175799 CGCGATAGTCGAAGATCGCGT
1 TGCGATATTCCAAG-T-TCGT
* *
8175820 TGCGATTTATTTCAAATTCGT
1 TGCGA--TATTCCAAGTTCGT
*
8175841 TGCGATAGTCCAAGTTCGCGT
1 TGCGATATTCCAAGTT--CGT
*
8175862 TGCGATTTATTCTAAGTTCGT
1 TGCGA--TATTCCAAGTTCGT
* *
8175883 TGCGATAGTCGAAGTTCGCGT
1 TGCGATATTCCAAGTT--CGT
*
8175904 TGCGATTTATTCCAAATTCGT
1 TGCGA--TATTCCAAGTTCGT
*
8175925 TGTGATA
1 TGCGATA
8175932 GTCAAAAATC
Statistics
Matches: 199, Mismatches: 34, Indels: 48
0.71 0.12 0.17
Matches are distributed among these distances:
19 63 0.32
20 4 0.02
21 93 0.47
22 1 0.01
23 38 0.19
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (19 bp):
TGCGATATTCCAAGTTCGT
Found at i:8182328 original size:2 final size:2
Alignment explanation
Indices: 8182321--8182383 Score: 101
Period size: 2 Copynumber: 32.0 Consensus size: 2
8182311 TTTCATATGC
8182321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
8182362 AT AT AT AT GT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
8182384 TAGCATGACT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
1 1 0.02
2 55 0.98
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8183627 original size:3 final size:3
Alignment explanation
Indices: 8183619--8183652 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
8183609 AATTATTTAT
* *
8183619 ATA ATA ATA ATT ATT ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8183653 GATGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:8183632 original size:18 final size:18
Alignment explanation
Indices: 8183604--8183647 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
8183594 CTAAAATGTA
8183604 AATAA-AATTATT-TATAT
1 AATAATAATTATTATA-AT
8183621 AATAATAATTATTATAAT
1 AATAATAATTATTATAAT
8183639 AATAATAAT
1 AATAATAAT
8183648 AATAAGATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.20
18 18 0.72
19 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAATAATTATTATAAT
Found at i:8184086 original size:116 final size:116
Alignment explanation
Indices: 8183910--8184238 Score: 516
Period size: 116 Copynumber: 2.8 Consensus size: 116
8183900 CATTTGAAAA
* ** * *
8183910 CATCCTGCACTGTAGGTCTTATGGATGACTCGAAGGTTTTGAAAATATCAAAAAGCTCCCGAAGG
1 CATCTTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTT--AAATATCAAAAAGCTCCCGAAGG
*
8183975 CTTTTTGAAAACATCCTACACTGTAGGTCTTATGGATGGCCCTGAGGTCTTAT
64 CTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTAT
*
8184028 CATCTTGCACTGTAGGTCTTACAGATG-CCCCAGAGGCTTTAAATATCAAAAAGCTCCCGAAGGC
1 CATCTTGCACTGTAGGTCTTACAGATGACCCGA-AGGCTTTAAATATCAAAAAGCTCCCGAAGGC
8184092 TTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTAT
65 TTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTAT
* *
8184144 CATCTTGCACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAATATCAAAAAGCTCCCGAATGCT
1 CATCTTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAATATCAAAAAGCTCCCGAAGGCT
* * *
8184209 TTTTGAAATCATCATGCACTGTAAGTCTTA
66 TTTTGAAAACATCCTGCACTGTAGGTCTTA
8184239 CAGATGTGGT
Statistics
Matches: 196, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
116 159 0.81
117 7 0.04
118 30 0.15
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (116 bp):
CATCTTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAATATCAAAAAGCTCCCGAAGGCT
TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTAT
Found at i:8184163 original size:22 final size:23
Alignment explanation
Indices: 8184102--8184165 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 23
8184092 TTTTTGAAAA
*
8184102 CATCCTGCACTGTAGGTCTTATG
1 CATCTTGCACTGTAGGTCTTATG
* * *
8184125 GA--TGGCCCTG-AGGTCTTAT-
1 CATCTTGCACTGTAGGTCTTATG
8184144 CATCTTGCACTGTAGGTCTTAT
1 CATCTTGCACTGTAGGTCTTAT
8184166 AGATGACCCG
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
19 1 0.03
20 9 0.29
21 11 0.35
22 9 0.29
23 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (23 bp):
CATCTTGCACTGTAGGTCTTATG
Found at i:8184962 original size:22 final size:22
Alignment explanation
Indices: 8184905--8184964 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
8184895 AATAAAGCTT
* *
8184905 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAGAGTGAATCTA
*
8184927 TCATCTTTGGAGAGTGAATCTA
1 TCATCTTTGAAGAGTGAATCTA
8184949 TCATCTTTGAAGAGTG
1 TCATCTTTGAAGAGTG
8184965 TAGATGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAGAGTGAATCTA
Found at i:8185819 original size:63 final size:63
Alignment explanation
Indices: 8185704--8185836 Score: 160
Period size: 63 Copynumber: 2.1 Consensus size: 63
8185694 AAAGAGTTAC
* ** * ** * *
8185704 CCTAAGAGAACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTTGGGGCCGTGGGGCCTA
1 CCTAAGAAAACATCTTAGGGCCACAGAGCCTACCCAAGATAGATCTCAGGGCCGTAGAGCCTA
* *
8185767 CCTAAGAAAACATCTTAGGGCCACAGGGCCTACCCGAGA-ATGATCTCAGGGCCGTAGAGCCTA
1 CCTAAGAAAACATCTTAGGGCCACAGAGCCTACCCAAGATA-GATCTCAGGGCCGTAGAGCCTA
8185830 CCTAAGA
1 CCTAAGA
8185837 GTCACATTAG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 1 0.02
63 58 0.98
ACGTcount: A:0.29, C:0.26, G:0.27, T:0.18
Consensus pattern (63 bp):
CCTAAGAAAACATCTTAGGGCCACAGAGCCTACCCAAGATAGATCTCAGGGCCGTAGAGCCTA
Found at i:8186689 original size:29 final size:29
Alignment explanation
Indices: 8186656--8186751 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
8186646 AAAATACCAA
*
8186656 AATGTTACCTTTTTCAAAATAATTCCCAG
1 AATGTCACCTTTTTCAAAATAATTCCCAG
* *
8186685 AATGTCACCTTTTTCACAAA-AATTCTCAA
1 AATGTCACCTTTTTCA-AAATAATTCCCAG
**
8186714 AATGTCATTTTTTTCAAAATAATTCCCAG
1 AATGTCACCTTTTTCAAAATAATTCCCAG
8186743 AATGTCACC
1 AATGTCACC
8186752 GGGTCAGGTC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 3 0.05
29 50 0.89
30 3 0.05
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.36
Consensus pattern (29 bp):
AATGTCACCTTTTTCAAAATAATTCCCAG
Found at i:8186786 original size:17 final size:18
Alignment explanation
Indices: 8186758--8186795 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8186748 CACCGGGTCA
8186758 GGTCGAGTCAACGAGTCG
1 GGTCGAGTCAACGAGTCG
*
8186776 GGTCG-GTCAACGGGTCG
1 GGTCGAGTCAACGAGTCG
8186793 GGT
1 GGT
8186796 TAGATCGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.16, C:0.21, G:0.45, T:0.18
Consensus pattern (18 bp):
GGTCGAGTCAACGAGTCG
Found at i:8186803 original size:22 final size:22
Alignment explanation
Indices: 8186778--8186830 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
8186768 ACGAGTCGGG
*
8186778 TCGGTCAACGGGTCGGGTTAGA
1 TCGGTCAACGGGTCGGGTCAGA
8186800 TCGGTCAACGGGTCGGGTCAGA
1 TCGGTCAACGGGTCGGGTCAGA
*
8186822 CCGGTCAAC
1 TCGGTCAAC
8186831 CCGGTTTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.19
Consensus pattern (22 bp):
TCGGTCAACGGGTCGGGTCAGA
Found at i:8186881 original size:57 final size:57
Alignment explanation
Indices: 8186812--8186923 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
8186802 GGTCAACGGG
* *
8186812 TCGGGTCAGACCGGTCA-ACCCGGTTTAGACTGGTCAACCCAGTTCGGACCGGTCAGA
1 TCGGGTCAGACCGGTCAGA-CCGGTTTAGACCGGTCAAACCAGTTCGGACCGGTCAGA
* * * * *
8186869 TCGGTTCAGACCGGTCAGATCGGTTTAGACCGGTCAAATCGGTTTGGACCGGTCA
1 TCGGGTCAGACCGGTCAGACCGGTTTAGACCGGTCAAACCAGTTCGGACCGGTCA
8186924 AGCCAGTCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
57 46 0.98
58 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (57 bp):
TCGGGTCAGACCGGTCAGACCGGTTTAGACCGGTCAAACCAGTTCGGACCGGTCAGA
Found at i:8186883 original size:10 final size:10
Alignment explanation
Indices: 8186853--8186902 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
8186843 GGTCAACCCA
*
8186853 GTTCGGACCG
1 GTTCAGACCG
*
8186863 G-TCAGATCG
1 GTTCAGACCG
8186872 GTTCAGACCG
1 GTTCAGACCG
*
8186882 G-TCAGATCG
1 GTTCAGACCG
*
8186891 GTTTAGACCG
1 GTTCAGACCG
8186901 GT
1 GT
8186903 CAAATCGGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
9 15 0.47
10 17 0.53
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (10 bp):
GTTCAGACCG
Found at i:8186924 original size:19 final size:19
Alignment explanation
Indices: 8186819--8186924 Score: 104
Period size: 19 Copynumber: 5.6 Consensus size: 19
8186809 GGGTCGGGTC
**
8186819 AGACCGGTCAACCCGGTTT
1 AGACCGGTCAAATCGGTTT
* ** * *
8186838 AGACTGGTCAACCCAGTTC
1 AGACCGGTCAAATCGGTTT
* * *
8186857 GGACCGGTCAGATCGGTTC
1 AGACCGGTCAAATCGGTTT
*
8186876 AGACCGGTCAGATCGGTTT
1 AGACCGGTCAAATCGGTTT
8186895 AGACCGGTCAAATCGGTTT
1 AGACCGGTCAAATCGGTTT
*
8186914 GGACCGGTCAA
1 AGACCGGTCAA
8186925 GCCAGTCAAC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 74 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (19 bp):
AGACCGGTCAAATCGGTTT
Found at i:8187892 original size:54 final size:54
Alignment explanation
Indices: 8187828--8187983 Score: 276
Period size: 54 Copynumber: 2.9 Consensus size: 54
8187818 ACCATAACTG
* *
8187828 GTTCGTAAAACATTTGACAACACATTCATCCTTTCGTGTGGCTTCTGTCTAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCTAGAT
8187882 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCTAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCTAGAT
* *
8187936 GTTCGTAAAACATTTGACAACACGTTCATCCTTTCCTATGGCTTCTGC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGC
8187984 ACATATTTTT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCTAGAT
Found at i:8191121 original size:10 final size:10
Alignment explanation
Indices: 8191106--8191143 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
8191096 CTTGATTCAA
8191106 TTTTTTCTTT
1 TTTTTTCTTT
8191116 TTTTTTCTTT
1 TTTTTTCTTT
8191126 TTTTTTCATCTT
1 TTTTTTC-T-TT
8191138 TTTTTT
1 TTTTTT
8191144 TTGAATGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 17 0.65
11 1 0.04
12 8 0.31
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:8191131 original size:13 final size:13
Alignment explanation
Indices: 8191113--8191145 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8191103 CAATTTTTTC
8191113 TTTTTTTT-TCTT
1 TTTTTTTTATCTT
*
8191125 TTTTTTTCATCTT
1 TTTTTTTTATCTT
8191138 TTTTTTTT
1 TTTTTTTT
8191146 GAATGAGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTATCTT
Found at i:8192670 original size:19 final size:18
Alignment explanation
Indices: 8192637--8192673 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8192627 TTGTTGATCA
*
8192637 CATTTTCAATTAATTCTC
1 CATTTTCAATAAATTCTC
8192655 CATTTATCAATAAATTCTC
1 CATTT-TCAATAAATTCTC
8192674 GAATTCCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.32, C:0.22, G:0.00, T:0.46
Consensus pattern (18 bp):
CATTTTCAATAAATTCTC
Found at i:8195413 original size:17 final size:18
Alignment explanation
Indices: 8195391--8195435 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
8195381 AAATTAGAGC
* *
8195391 AAAATAAAATGCATA-AA
1 AAAATAAAATGAAAATAA
8195408 AAAATAAAAT-AAAATAA
1 AAAATAAAATGAAAATAA
8195425 AAAATAAAATG
1 AAAATAAAATG
8195436 GTTAGTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (18 bp):
AAAATAAAATGAAAATAA
Found at i:8195433 original size:22 final size:22
Alignment explanation
Indices: 8195391--8195434 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8195381 AAATTAGAGC
* *
8195391 AAAATAAAATGCATAAAAAAAT
1 AAAATAAAATGAAAAAAAAAAT
8195413 AAAATAAAAT-AAAAAATAAAAT
1 AAAATAAAATGAAAAAA-AAAAT
8195435 GGTTAGTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (22 bp):
AAAATAAAATGAAAAAAAAAAT
Found at i:8196590 original size:2 final size:2
Alignment explanation
Indices: 8196585--8196627 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8196575 GAAAAAACAT
8196585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8196627 T
1 T
8196628 TTAGGGTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8196746 original size:18 final size:17
Alignment explanation
Indices: 8196709--8196756 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
8196699 GTCTTTTCTT
8196709 TAATATTAATAAATAAA
1 TAATATTAATAAATAAA
*
8196726 TAAATATTAATAAGA-ATA
1 T-AATATTAATAA-ATAAA
*
8196744 TAATAATAATAAA
1 TAATATTAATAAA
8196757 AACTAAGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 1 0.04
17 11 0.41
18 14 0.52
19 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
TAATATTAATAAATAAA
Found at i:8198388 original size:3 final size:3
Alignment explanation
Indices: 8198380--8198421 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8198370 AATTATTTAT
8198380 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8198422 TGAAAAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8198537 original size:13 final size:13
Alignment explanation
Indices: 8198519--8198549 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8198509 AAATCTCTTT
8198519 GTATTCGTAAGAA
1 GTATTCGTAAGAA
8198532 GTATTCGTAAGAA
1 GTATTCGTAAGAA
*
8198545 ATATT
1 GTATT
8198550 TAAAGACGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (13 bp):
GTATTCGTAAGAA
Found at i:8199280 original size:3 final size:3
Alignment explanation
Indices: 8199274--8199328 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
8199264 ATTAGTAATA
* * *
8199274 ATT ATT ATT A-T ATT AAT ATT ATT -TC ATT AAT ATT ATT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
8199319 ATT AAT ATT A
1 ATT ATT ATT A
8199329 CATTTTACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
2 5 0.12
3 36 0.88
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:8199295 original size:14 final size:14
Alignment explanation
Indices: 8199262--8199322 Score: 70
Period size: 14 Copynumber: 4.2 Consensus size: 14
8199252 GGGTCTTTTT
*
8199262 TTATTAGTAATAATTA
1 TTATTA-TATTAA-TA
8199278 TTATTATATTAATA
1 TTATTATATTAATA
8199292 TTATT-TCATTAATA
1 TTATTAT-ATTAATA
*
8199306 TTATTATATTATTA
1 TTATTATATTAATA
8199320 TTA
1 TTA
8199323 ATATTACATT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
13 1 0.02
14 28 0.68
15 6 0.15
16 6 0.15
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (14 bp):
TTATTATATTAATA
Found at i:8199308 original size:20 final size:19
Alignment explanation
Indices: 8199274--8199328 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
8199264 ATTAGTAATA
8199274 ATTATTATT-ATATTA-AT
1 ATTATTATTAATATTATAT
8199291 ATTATTTCATTAATATTATTAT
1 ATTA-TT-ATTAATATTA-TAT
8199313 ATTATTATTAATATTA
1 ATTATTATTAATATTA
8199329 CATTTTACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
17 4 0.12
18 2 0.06
19 3 0.09
20 16 0.48
21 2 0.06
22 6 0.18
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTATTATTAATATTATAT
Found at i:8200265 original size:15 final size:16
Alignment explanation
Indices: 8200245--8200279 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8200235 CGTGTTTCTC
8200245 ATATTTTTA-GGGTAA
1 ATATTTTTAGGGGTAA
8200260 ATATTTTTAGGGGTAA
1 ATATTTTTAGGGGTAA
8200276 ATAT
1 ATAT
8200280 CTATTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (16 bp):
ATATTTTTAGGGGTAA
Found at i:8201280 original size:21 final size:21
Alignment explanation
Indices: 8201245--8201288 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
8201235 ATTCAATTTG
* *
8201245 TATTTTTTAATAGATGAGGAAA
1 TATTTTTTAACAGAT-AAGAAA
8201267 TATTTTTT-ACAGATAAGAAA
1 TATTTTTTAACAGATAAGAAA
8201287 TA
1 TA
8201289 GAAGAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 5 0.25
22 8 0.40
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (21 bp):
TATTTTTTAACAGATAAGAAA
Found at i:8203459 original size:21 final size:20
Alignment explanation
Indices: 8203421--8203460 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8203411 GATCAACATT
*
8203421 TTTGCATCTGCATTTGCATC
1 TTTGCATCTGCATATGCATC
*
8203441 TTTGCATTTTGCATATGCAT
1 TTTGCA-TCTGCATATGCAT
8203461 TTCATTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (20 bp):
TTTGCATCTGCATATGCATC
Found at i:8204831 original size:13 final size:13
Alignment explanation
Indices: 8204813--8204847 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8204803 ACAAAAAGAG
*
8204813 GACAAAGAGCATA
1 GACAAAGAGCACA
8204826 GACAAAGAGCACA
1 GACAAAGAGCACA
8204839 GACAAAGAG
1 GACAAAGAG
8204848 TCTCTCGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.54, C:0.17, G:0.26, T:0.03
Consensus pattern (13 bp):
GACAAAGAGCACA
Found at i:8205693 original size:22 final size:21
Alignment explanation
Indices: 8205668--8205733 Score: 60
Period size: 24 Copynumber: 2.9 Consensus size: 21
8205658 CAAAAGGGAC
8205668 AATATTTTCAAACTTTTGATT
1 AATATTTTCAAACTTTTGATT
*
8205689 AAATATTTTTCAAAACTCTTTTAATT
1 -AATA-TTTTC-AAA--CTTTTGATT
* *
8205715 GATATTTTCATACTTTTGA
1 AATATTTTCAAACTTTTGA
8205734 AAATACAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
21 6 0.17
22 4 0.11
23 7 0.19
24 8 0.22
25 3 0.08
26 8 0.22
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.52
Consensus pattern (21 bp):
AATATTTTCAAACTTTTGATT
Found at i:8206677 original size:107 final size:103
Alignment explanation
Indices: 8206429--8206744 Score: 381
Period size: 107 Copynumber: 3.0 Consensus size: 103
8206419 GCTTGAGACA
* *
8206429 ATTTCTTTCAAAACAAATTTCGTCTCATTTGAGACATTTTTCCTTTGAGATAGAAAATTT-GAAT
1 ATTT-TTTCAAAACAAATTTCGTCTCATTTGAGACATTTTTCCTTTGAAATA-CAAATTTCGAAT
*
8206493 TTGTTTCATATTAAACAAAGTTGATCTCATTTGAGATCGT
64 TTGTTTCATATTAAACAAAGTTGATCTCACTTGAGATCGT
* * *
8206533 ATTTTCTT-AAAACAAACTTCGTCT-TTCTTGAGACATTTTTCCCTTTGATATACAAATTTCGAA
1 ATTTT-TTCAAAACAAATTTCGTCTCAT-TTGAGACATTTTT-CCTTTGAAATACAAATTTCGAA
* * * *
8206596 TTTGATTCACT-TGAAACAAAAATTAATCTCACTTGAGA-CTGTT
63 TTTGTTTCA-TATTAAAC-AAAGTTGATCTCACTTGAGATC-G-T
* *
8206639 ATTCTTTTCAAAACAAATTTCGTCTCGTTTGAGACATTTTTCCTTTGAGAATACAAATTTCAAAT
1 ATT-TTTTCAAAACAAATTTCGTCTCATTTGAGACATTTTTCCTTTGA-AATACAAATTTCGAAT
8206704 TTGTTTTCATATTAAACAAAGTTGATCTCACTTGAGATCGT
64 TTG-TTTCATATTAAACAAAGTTGATCTCACTTGAGATCGT
8206745 TTTCTCAAAC
Statistics
Matches: 180, Mismatches: 17, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
102 1 0.01
103 35 0.19
104 33 0.18
105 19 0.11
106 14 0.08
107 67 0.37
108 11 0.06
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (103 bp):
ATTTTTTCAAAACAAATTTCGTCTCATTTGAGACATTTTTCCTTTGAAATACAAATTTCGAATTT
GTTTCATATTAAACAAAGTTGATCTCACTTGAGATCGT
Found at i:8206809 original size:35 final size:35
Alignment explanation
Indices: 8206751--8206849 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 35
8206741 TCGTTTTCTC
*
8206751 AAACAATGTTT-TCTCGCTTGAGACAATTTCTCTA
1 AAACAATTTTTGTCTCGCTTGAGACAATTTCTCTA
* *
8206785 AAACAATTTTTGTGTCGTTTGAGACAATTTCTCTA
1 AAACAATTTTTGTCTCGCTTGAGACAATTTCTCTA
* * *
8206820 AAACAAATGTTGTCTCACTTGAGACAATTT
1 AAACAATTTTTGTCTCGCTTGAGACAATTT
8206850 TCCAAATTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 10 0.18
35 46 0.82
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (35 bp):
AAACAATTTTTGTCTCGCTTGAGACAATTTCTCTA
Found at i:8206838 original size:210 final size:208
Alignment explanation
Indices: 8206393--8206849 Score: 452
Period size: 210 Copynumber: 2.2 Consensus size: 208
8206383 AAATTTTGAG
* * *
8206393 ATTTTTCTAAAAACAAATTTTGTCTCGCTTGAGACAATTTCTTTCAAAACAAATTTCGTCTCATT
1 ATTTCTCT-AAAACAAATATTGTCTCACTTGAGACAATTTCTTTCAAAACAAATTTCGTCTCATT
* *
8206458 TGAGACATTTTTCCTTTGAGATAGAAAATTTGAATTTGTTTCATATTAAACAAAGTTGATCTCAT
65 TGAGACATTTTTCCTTTGAGATAGAAAATTTAAATTTGTTTCATATTAAACAAAGTTGATCTCAC
** * * *
8206523 TTGAGATCGTATTTTCTTAAAACAAACTTCGTCTTTCTTGAGACATTTTTCCCTTTGATATACAA
130 TTGAGATCG-ATTTTCTTAAAACAAACTTCGTCTCGCTTGAGACATATTT-CCTCTGATAAACAA
**
8206588 ATTTCGAATTTGATTC
193 ATTTCGAATTTGAGAC
* * * **
8206604 A---CT-TGAAACAAAAATTAATCTCACTTGAGACTGTTATTCTTTTCAAAACAAATTTCGTCTC
1 ATTTCTCTAAAACAAATATT-GTCTCACTTGAGAC-AAT-TTC-TTTCAAAACAAATTTCGTCTC
* *
8206665 GTTTGAGACATTTTTCCTTTGAGAATA-CAAATTTCAAATTTGTTTTCATATTAAACAAAGTTGA
62 ATTTGAGACATTTTTCCTTTGAG-ATAGAAAATTT-AAATTTG-TTTCATATTAAACAAAGTTGA
* ** *
8206729 TCTCACTTGAGATCG-TTTTC-TCAAACAATGTT-TTCTCGCTTGAGACA-ATTT-CTCT-A-AA
124 TCTCACTTGAGATCGATTTTCTTAAAACAAACTTCGTCTCGCTTGAGACATATTTCCTCTGATAA
* * **
8206787 ACAATTTTTGTGTCGTTTGAGAC
189 ACAA-ATTT-CG-AATTTGAGAC
*
8206810 AATTTCTCTAAAACAAATGTTGTCTCACTTGAGACAATTT
1 -ATTTCTCTAAAACAAATATTGTCTCACTTGAGACAATTT
8206850 TCCAAATTAT
Statistics
Matches: 198, Mismatches: 33, Indels: 33
0.75 0.12 0.12
Matches are distributed among these distances:
203 5 0.03
204 4 0.02
205 4 0.02
206 15 0.08
207 17 0.09
208 16 0.08
209 13 0.07
210 69 0.35
211 20 0.10
212 35 0.18
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.41
Consensus pattern (208 bp):
ATTTCTCTAAAACAAATATTGTCTCACTTGAGACAATTTCTTTCAAAACAAATTTCGTCTCATTT
GAGACATTTTTCCTTTGAGATAGAAAATTTAAATTTGTTTCATATTAAACAAAGTTGATCTCACT
TGAGATCGATTTTCTTAAAACAAACTTCGTCTCGCTTGAGACATATTTCCTCTGATAAACAAATT
TCGAATTTGAGAC
Found at i:8208219 original size:28 final size:28
Alignment explanation
Indices: 8208155--8208234 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 28
8208145 AACACATCAC
*
8208155 CTTTGAGTATGTTT-TTCTTGAAACAAAT
1 CTTTGAGTCTGTTTCTT-TTGAAACAAAT
8208183 CTTTGAGTCTGTTTCTTTTGAAACAAAT
1 CTTTGAGTCTGTTTCTTTTGAAACAAAT
* * **
8208211 CTTTAAGTCGGTTTCCCTTGAAAC
1 CTTTGAGTCTGTTTCTTTTGAAAC
8208235 CACAATCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 44 0.96
29 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (28 bp):
CTTTGAGTCTGTTTCTTTTGAAACAAAT
Found at i:8208358 original size:43 final size:43
Alignment explanation
Indices: 8208247--8208374 Score: 106
Period size: 43 Copynumber: 3.0 Consensus size: 43
8208237 CAATCACTAA
* * *
8208247 AGATGACCAGCCGTCCTCATCACGTAGGAGAAGTGTCATCCCCT
1 AGAT-ACCAGACGTCCTCATCACGTAGGAGACGTGTTATCCCCT
* * * *
8208291 -G--ACCAGATC-TCTTCATCGCATAGGAGTCGTGTTA-CCCCT
1 AGATACCAGA-CGTCCTCATCACGTAGGAGACGTGTTATCCCCT
8208330 AGATAACCAGACGTCCTCATCACGTAGGA-ACCGTGTTATCGCCCT
1 AGAT-ACCAGACGTCCTCATCACGTAGGAGA-CGTGTTATC-CCCT
8208375 TTCTAAAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
39 5 0.08
40 25 0.39
41 1 0.02
42 1 0.02
43 27 0.42
44 1 0.02
45 4 0.06
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (43 bp):
AGATACCAGACGTCCTCATCACGTAGGAGACGTGTTATCCCCT
Found at i:8208623 original size:134 final size:134
Alignment explanation
Indices: 8208263--8208583 Score: 473
Period size: 134 Copynumber: 2.4 Consensus size: 134
8208253 CCAGCCGTCC
* * * * *
8208263 TCATCACGTAGGAGAAGTGTCATCCCCTGACCAGATCTCTTCATCGCATAGGAGTCGTGTTACCC
1 TCATCACGTATGAGCAGTGTCATCCCCTGACCAGATCTCTTCATCACGTAGGAGTCGTGTCACCC
* * * * * *
8208328 CTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCGCCCTTTCTAAAAATGACCAGAA
66 ATAGATAACCAGACGTCCTCATCGCGTAGGAACCGAGTTATCACCATTCCTAAAAATGACCAGAA
8208393 CTCT
131 CTCT
8208397 TCATCACGTATGAGCCA-TGTCATCCCCTGACCAGATCTCTTCATCACGTAGGAGTCGTGTCACC
1 TCATCACGTATGAG-CAGTGTCATCCCCTGACCAGATCTCTTCATCACGTAGGAGTCGTGTCACC
* * * *
8208461 CATAGATAATCAGTCGTCCTCATCGCGTAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGA
65 CATAGATAACCAGACGTCCTCATCGCGTAGGAACCGAGTTATCACCATTCCTAAAAATGACCAGA
8208526 ACTCT
130 ACTCT
* *
8208531 TCATCACGTATGAGCAGTGTCATCCCCTGACCAGATTTCCTCATCACGTAGGA
1 TCATCACGTATGAGCAGTGTCATCCCCTGACCAGATCTCTTCATCACGTAGGA
8208584 ACCGAGTCAC
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
133 2 0.01
134 165 0.98
135 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (134 bp):
TCATCACGTATGAGCAGTGTCATCCCCTGACCAGATCTCTTCATCACGTAGGAGTCGTGTCACCC
ATAGATAACCAGACGTCCTCATCGCGTAGGAACCGAGTTATCACCATTCCTAAAAATGACCAGAA
CTCT
Found at i:8208806 original size:3 final size:3
Alignment explanation
Indices: 8208800--8208854 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
8208790 ATTAGTAATA
* * *
8208800 ATT ATT ATT A-T ATT AAT ATT ATT -TC ATT AAT ATT ATT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
8208845 ATT AAT ATT A
1 ATT ATT ATT A
8208855 CATTTTACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
2 5 0.12
3 36 0.88
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:8208821 original size:14 final size:14
Alignment explanation
Indices: 8208788--8208848 Score: 70
Period size: 14 Copynumber: 4.2 Consensus size: 14
8208778 GGGTCTTTTT
*
8208788 TTATTAGTAATAATTA
1 TTATTA-TATTAA-TA
8208804 TTATTATATTAATA
1 TTATTATATTAATA
8208818 TTATT-TCATTAATA
1 TTATTAT-ATTAATA
*
8208832 TTATTATATTATTA
1 TTATTATATTAATA
8208846 TTA
1 TTA
8208849 ATATTACATT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
13 1 0.02
14 28 0.68
15 6 0.15
16 6 0.15
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (14 bp):
TTATTATATTAATA
Found at i:8208834 original size:20 final size:19
Alignment explanation
Indices: 8208800--8208854 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
8208790 ATTAGTAATA
8208800 ATTATTATT-ATATTA-AT
1 ATTATTATTAATATTATAT
8208817 ATTATTTCATTAATATTATTAT
1 ATTA-TT-ATTAATATTA-TAT
8208839 ATTATTATTAATATTA
1 ATTATTATTAATATTA
8208855 CATTTTACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
17 4 0.12
18 2 0.06
19 3 0.09
20 16 0.48
21 2 0.06
22 6 0.18
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTATTATTAATATTATAT
Found at i:8210531 original size:21 final size:21
Alignment explanation
Indices: 8210496--8210539 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
8210486 ATTCAATTTG
* *
8210496 TATTTTTTAATAGATGAGGAAA
1 TATTTTTTAACAGAT-AAGAAA
8210518 TATTTTTT-ACAGATAAGAAA
1 TATTTTTTAACAGATAAGAAA
8210538 TA
1 TA
8210540 GACGAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 5 0.25
22 8 0.40
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (21 bp):
TATTTTTTAACAGATAAGAAA
Found at i:8219596 original size:18 final size:19
Alignment explanation
Indices: 8219556--8219599 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
8219546 TTTGGTTCAC
* *
8219556 GGAATATAAGATTACCGGTG
1 GGAATAAAAGATTACC-GAG
8219576 GGAATAAAAGATTACC-AG
1 GGAATAAAAGATTACCGAG
8219594 GGAATA
1 GGAATA
8219600 GGATTACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
20 15 0.68
ACGTcount: A:0.43, C:0.09, G:0.27, T:0.20
Consensus pattern (19 bp):
GGAATAAAAGATTACCGAG
Found at i:8219821 original size:37 final size:37
Alignment explanation
Indices: 8219748--8219822 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
8219738 GTTGGAAAAT
* * *
8219748 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAAGTGAAAATCATAAA
* *
8219785 ATTTATATAATTTTTTTTACAAAAGTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAAGTGAAAATCATAAA
8219822 A
1 A
8219823 AGGTAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 14 0.44
38 18 0.56
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAAGTGAAAATCATAAA
Found at i:8220770 original size:31 final size:31
Alignment explanation
Indices: 8220719--8220798 Score: 142
Period size: 31 Copynumber: 2.5 Consensus size: 31
8220709 TTGTTGATGA
*
8220719 TCTTATCAAAAAAAAATTACGAGGCCTCCACT
1 TCTTATC-AAAAAAATTTACGAGGCCTCCACT
8220751 TCTTATCAAAAAAATTTACGAGGCCTCCACT
1 TCTTATCAAAAAAATTTACGAGGCCTCCACT
8220782 TCTTATCAAAAAAATTT
1 TCTTATCAAAAAAATTT
8220799 GCTGATGATC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 40 0.85
32 7 0.15
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (31 bp):
TCTTATCAAAAAAATTTACGAGGCCTCCACT
Found at i:8238626 original size:12 final size:12
Alignment explanation
Indices: 8238609--8238633 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8238599 GATTGTGACA
8238609 AGGGATGTAACT
1 AGGGATGTAACT
8238621 AGGGATGTAACT
1 AGGGATGTAACT
8238633 A
1 A
8238634 TGGAACAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (12 bp):
AGGGATGTAACT
Found at i:8243775 original size:21 final size:21
Alignment explanation
Indices: 8243751--8243793 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8243741 AAAAACTTAT
* *
8243751 TTAAAATATTATTATTTTTAA
1 TTAAAATAATAATATTTTTAA
8243772 TTAAAATAATAATATTTTTAA
1 TTAAAATAATAATATTTTTAA
8243793 T
1 T
8243794 ATTTTCGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAAATAATAATATTTTTAA
Found at i:8244407 original size:2 final size:2
Alignment explanation
Indices: 8244400--8244428 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8244390 TATCTTTTTC
8244400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8244429 GAATAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8244507 original size:14 final size:14
Alignment explanation
Indices: 8244485--8244519 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8244475 AATAATTTAA
8244485 AATAAAATTTATTT
1 AATAAAATTTATTT
*
8244499 AATAGAATTTATTT
1 AATAAAATTTATTT
*
8244513 GATAAAA
1 AATAAAA
8244520 ATATAAACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (14 bp):
AATAAAATTTATTT
Found at i:8251659 original size:72 final size:72
Alignment explanation
Indices: 8251542--8251685 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
8251532 TAAACTTTTT
8251542 GTCATTGAATTCAAAAAACATAAGATTTAGTCATTTCCATTTCGTAATTAAGGTGTGGTCAAAGG
1 GTCATTGAATTCAAAAAACATAAGATTTAGTCATTTCCATTTCGTAATTAAGGTGTGGTCAAAGG
8251607 TTAATGG
66 TTAATGG
8251614 GTCATTGAATTCAAAAAACATAAGATTTAGTCATTTCCATTTCGTAATTAAGGTGTGGTCAAAGG
1 GTCATTGAATTCAAAAAACATAAGATTTAGTCATTTCCATTTCGTAATTAAGGTGTGGTCAAAGG
8251679 TTAATGG
66 TTAATGG
8251686 TCGTTAAAAC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (72 bp):
GTCATTGAATTCAAAAAACATAAGATTTAGTCATTTCCATTTCGTAATTAAGGTGTGGTCAAAGG
TTAATGG
Found at i:8253190 original size:54 final size:54
Alignment explanation
Indices: 8253132--8253535 Score: 585
Period size: 54 Copynumber: 7.5 Consensus size: 54
8253122 TAAGCTCATT
* *
8253132 ATGAATTTTGTAGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * * * *
8253186 ATGAATTCCATGGGTTGCACACTTAGTTCCTATACGGTTGTTCATTAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
*
8253240 ATGAATTTCGTGGGTTGCACACTTAGTGGCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * *
8253294 ATGAATTTCGTAGGTTACACACTTAGTGCCTATACGGTCGTTCATCTACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * * * *
8253348 ATGAATTCCGTAGGTTGTACACTTAGTGCCAATACAGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * *
8253402 ATGAACTACGTGGGTTGCACGCTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * *
8253456 ATGAA-TTCTGTGGGTTGTACACTTGGTGCCTATACGGTCGTTCATCAATATATG
1 ATGAATTTC-GTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
*
8253510 ATGAATTTTGTGGGTTGCACACTTAG
1 ATGAATTTCGTGGGTTGCACACTTAG
8253536 AGTAACATCT
Statistics
Matches: 310, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
53 2 0.01
54 306 0.99
55 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (54 bp):
ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
Found at i:8254413 original size:20 final size:20
Alignment explanation
Indices: 8254390--8254437 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
8254380 TTAGTGTAGT
8254390 ATCGATACTAGAGGTGTAAC
1 ATCGATACTAGAGGTGTAAC
*
8254410 ATCGATACTAGAGGTGTAGC
1 ATCGATACTAGAGGTGTAAC
8254430 ATCGATAC
1 ATCGATAC
8254438 CAAGGGTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (20 bp):
ATCGATACTAGAGGTGTAAC
Found at i:8260746 original size:23 final size:23
Alignment explanation
Indices: 8260714--8260802 Score: 133
Period size: 23 Copynumber: 3.9 Consensus size: 23
8260704 TCGAGGGTTT
* *
8260714 TACGCAGTCCTTCGGGACAATTC
1 TACGCGGTCCTTCGGGACATTTC
*
8260737 TACGTGGTCCTTCGGGACATTTC
1 TACGCGGTCCTTCGGGACATTTC
*
8260760 TACGCGGTCCTTTGGGACATTTC
1 TACGCGGTCCTTCGGGACATTTC
*
8260783 TACGCGGTCCTTTGGGACAT
1 TACGCGGTCCTTCGGGACAT
8260803 CTATGTGGTC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.16, C:0.27, G:0.26, T:0.31
Consensus pattern (23 bp):
TACGCGGTCCTTCGGGACATTTC
Found at i:8260827 original size:22 final size:22
Alignment explanation
Indices: 8260720--8260832 Score: 120
Period size: 23 Copynumber: 5.0 Consensus size: 22
8260710 GTTTTACGCA
*
8260720 GTCCTTCGGGACAATTCTACGTG
1 GTCCTTTGGGAC-ATTCTACGTG
* *
8260743 GTCCTTCGGGACATTTCTACGCG
1 GTCCTTTGGGACA-TTCTACGTG
*
8260766 GTCCTTTGGGACATTTCTACGCG
1 GTCCTTTGGGACA-TTCTACGTG
*
8260789 GTCCTTTGGGACA-TCTATGTG
1 GTCCTTTGGGACATTCTACGTG
* * *
8260810 GTCATTTTGGACATTCTATGTG
1 GTCCTTTGGGACATTCTACGTG
8260832 G
1 G
8260833 CACTTCGGTG
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
21 17 0.21
22 10 0.12
23 55 0.67
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (22 bp):
GTCCTTTGGGACATTCTACGTG
Found at i:8260893 original size:23 final size:23
Alignment explanation
Indices: 8260823--8260893 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
8260813 ATTTTGGACA
* *
8260823 TTCTATGTGGCACTTCGGTGTAT
1 TTCTATGCGGCACTTCGGTGCAT
* * *
8260846 TACTATACGGCACTTTGGTGCAT
1 TTCTATGCGGCACTTCGGTGCAT
8260869 TTCTATGCGGCACTTCGGTGCAT
1 TTCTATGCGGCACTTCGGTGCAT
8260892 TT
1 TT
8260894 TATACGAGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.39
Consensus pattern (23 bp):
TTCTATGCGGCACTTCGGTGCAT
Found at i:8263280 original size:20 final size:19
Alignment explanation
Indices: 8263252--8263289 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8263242 TGGTACTTAC
*
8263252 CTCTGGGTATCGATACTAA
1 CTCTGGGTATCAATACTAA
8263271 CTCTGAGGTATCAATACTA
1 CTCTG-GGTATCAATACTA
8263290 CTGACTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (19 bp):
CTCTGGGTATCAATACTAA
Found at i:8264335 original size:31 final size:31
Alignment explanation
Indices: 8264300--8264360 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
8264290 GGTTACTTAC
* * *
8264300 GTTATTGTTTTATTAAATTTTGGTCATTTGT
1 GTTATCGTTTTACTAAATTTAGGTCATTTGT
*
8264331 GTTATCGTTTTACTAAGTTTAGGTCATTTG
1 GTTATCGTTTTACTAAATTTAGGTCATTTG
8264361 GACGTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.56
Consensus pattern (31 bp):
GTTATCGTTTTACTAAATTTAGGTCATTTGT
Found at i:8265810 original size:31 final size:31
Alignment explanation
Indices: 8265745--8265810 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
8265735 AAGTCATAAG
* * *
8265745 AACTTAATAAAACAGTAACATAAGTAACCTA
1 AACTAAATAAAACAATAACATAAGTAACCAA
* * *
8265776 AACTAAATAAAACAATAACGTAAGTGATCAA
1 AACTAAATAAAACAATAACATAAGTAACCAA
8265807 AACT
1 AACT
8265811 TATGGTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (31 bp):
AACTAAATAAAACAATAACATAAGTAACCAA
Found at i:8266494 original size:2 final size:2
Alignment explanation
Indices: 8266455--8266483 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8266445 ACTTTGTATG
8266455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8266484 AAGAAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.