Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 73
Found at i:8266776 original size:20 final size:20
Alignment explanation
Indices: 8266739--8266778 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8266729 CCCATTCTAA
*
8266739 AATTAATTTTTTCTTTAATT
1 AATTAATTTTTTCATTAATT
8266759 AATTAATTATTTT-ATTAATT
1 AATTAATT-TTTTCATTAATT
8266779 GTATCTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
AATTAATTTTTTCATTAATT
Found at i:8266893 original size:3 final size:3
Alignment explanation
Indices: 8266887--8266955 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
8266877 TTATTATTTT
8266887 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8266935 ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
8266956 TATTGTATTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8267963 original size:7 final size:7
Alignment explanation
Indices: 8267947--8268004 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
8267937 GCTAACATTT
8267947 CTAA-CA
1 CTAACCA
8267953 CTAACCA
1 CTAACCA
**
8267960 CTAATTA
1 CTAACCA
8267967 CTAA-CA
1 CTAACCA
8267973 TCTAACCA
1 -CTAACCA
*
8267981 CTAACTA
1 CTAACCA
8267988 CTAA-CA
1 CTAACCA
*
8267994 CAAACCA
1 CTAACCA
8268001 CTAA
1 CTAA
8268005 TTTTTATTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
6 9 0.22
7 30 0.73
8 2 0.05
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAACCA
Found at i:8267979 original size:21 final size:20
Alignment explanation
Indices: 8267947--8268006 Score: 93
Period size: 21 Copynumber: 3.0 Consensus size: 20
8267937 GCTAACATTT
8267947 CTAACACTAACCACTAATTA
1 CTAACACTAACCACTAATTA
*
8267967 CTAACATCTAACCACTAACTA
1 CTAACA-CTAACCACTAATTA
*
8267988 CTAACACAAACCACTAATT
1 CTAACACTAACCACTAATT
8268007 TTTATTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 17 0.47
21 19 0.53
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (20 bp):
CTAACACTAACCACTAATTA
Found at i:8274119 original size:95 final size:99
Alignment explanation
Indices: 8273925--8274127 Score: 270
Period size: 95 Copynumber: 2.1 Consensus size: 99
8273915 AGCAAAGATA
* **
8273925 AAAAATTTCTCACTTAAGATGGTTTTTCTTAAAATCAAATTCATCTTTTTTGAAATAGTTCACCT
1 AAAAATTTCTCACTTAAGATAGTTTTTCTTAAAATCAAATT-ATCTTGCTTGAAATAGTTCACCT
8273990 TGGAACATAAATTTTGAAATTATTTCACTCGAAAC
65 TGGAACATAAATTTTGAAATTATTTCACTCGAAAC
* ** *
8274025 AAAAATTTTTCACTTAAGATAGTTTTTCTTAAAATC-AA-T-T-TTGCTTGAGGTAGTTCCCCTT
1 AAAAATTTCTCACTTAAGATAGTTTTTCTTAAAATCAAATTATCTTGCTTGAAATAGTTCACCTT
* * * *
8274086 GGAACATAGATTTTGGAATTGTTTCACTTGAAAC
66 GGAACATAAATTTTGAAATTATTTCACTCGAAAC
8274120 AAAAATTT
1 AAAAATTT
8274128 ATTTTTTTCT
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
95 54 0.59
96 1 0.01
98 1 0.01
99 2 0.02
100 34 0.37
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (99 bp):
AAAAATTTCTCACTTAAGATAGTTTTTCTTAAAATCAAATTATCTTGCTTGAAATAGTTCACCTT
GGAACATAAATTTTGAAATTATTTCACTCGAAAC
Found at i:8274485 original size:25 final size:22
Alignment explanation
Indices: 8274433--8274484 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
8274423 AGTTCTTAAT
8274433 GAGAAGAACTCATCCGATGAGG
1 GAGAAGAACTCATCCGATGAGG
8274455 GAGAAGAACTCATCCGATGAGG
1 GAGAAGAACTCATCCGATGAGG
8274477 GAGAAGAA
1 GAGAAGAA
8274485 GTTCATAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.33, T:0.12
Consensus pattern (22 bp):
GAGAAGAACTCATCCGATGAGG
Found at i:8274712 original size:139 final size:139
Alignment explanation
Indices: 8274458--8274793 Score: 503
Period size: 139 Copynumber: 2.4 Consensus size: 139
8274448 GATGAGGGAG
*
8274458 AAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATGCA-AAGAACTTGTTCAACCTTAGCTTGA
1 AAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATG-AGAAGAACTTGTTCAACCTTAGCTCGA
* ** *
8274522 TTCATCACATATAGAATTGAATCAGAAACACCTTACTCGAGGGATCAACATTTGTATTGCAGAGT
65 TTCATCACATATAGAATTGAATCAGAAACACCTCACTCGAGGGATCAACATTTCCAGTGCAGAGT
8274587 TCATAATGAA
130 TCATAATGAA
* *
8274597 AAGAACTCGTACGATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGAT
1 AAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGAT
* * * * * *
8274662 TCATCACATATGGAGTTGAATCAGCAACACCTCACTCGAGGTATCGACATTTCCAGTGGAGAGTT
66 TCATCACATATAGAATTGAATCAGAAACACCTCACTCGAGGGATCAACATTTCCAGTGCAGAGTT
*
8274727 CATAATGAG
131 CATAATGAA
* * *
8274736 AAGAACTCATCCAATAAGGGAGAAGAAGTTCATAGTGAGAAGAACTTGTTCAACCTTA
1 AAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTA
8274794 TCTTGTTTCC
Statistics
Matches: 177, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
138 1 0.01
139 176 0.99
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (139 bp):
AAGAACTCATCCGATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGAT
TCATCACATATAGAATTGAATCAGAAACACCTCACTCGAGGGATCAACATTTCCAGTGCAGAGTT
CATAATGAA
Found at i:8279136 original size:22 final size:23
Alignment explanation
Indices: 8279087--8279137 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
8279077 ACAACAAGAC
* *
8279087 CAACAACCGGGAACACAACACTA
1 CAACAACCCGAAACACAACACTA
*
8279110 GAACAACCCGAAACACAA-ACTA
1 CAACAACCCGAAACACAACACTA
8279132 CAACAA
1 CAACAA
8279138 TATAGCTACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.53, C:0.33, G:0.10, T:0.04
Consensus pattern (23 bp):
CAACAACCCGAAACACAACACTA
Found at i:8279611 original size:37 final size:37
Alignment explanation
Indices: 8279556--8279667 Score: 197
Period size: 37 Copynumber: 3.0 Consensus size: 37
8279546 AACATAACGT
* *
8279556 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
*
8279593 TAGAGTTTTACTATGATTCAAATTCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
8279630 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
8279667 T
1 T
8279668 CCATAAGCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (37 bp):
TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
Found at i:8280166 original size:36 final size:35
Alignment explanation
Indices: 8280125--8280195 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
8280115 TTTTTAAAAC
*
8280125 ATTTTATTT-ATATGCATATTCATTATATATATTTTT
1 ATTTTATTTCATATCCATA-TCATTAT-TATATTTTT
* *
8280161 ATTTTATTTCATTTCCCTATCATTATTATATTTTT
1 ATTTTATTTCATATCCATATCATTATTATATTTTT
8280196 TTCTCTCTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 9 0.29
36 16 0.52
37 6 0.19
ACGTcount: A:0.27, C:0.10, G:0.01, T:0.62
Consensus pattern (35 bp):
ATTTTATTTCATATCCATATCATTATTATATTTTT
Found at i:8280376 original size:3 final size:3
Alignment explanation
Indices: 8280363--8280396 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
8280353 CTTTACTTAC
* *
8280363 TAT TTT TAT TAT TAG TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8280397 CTATTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8280656 original size:18 final size:18
Alignment explanation
Indices: 8280635--8280674 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8280625 GGTCGTTTTT
8280635 TTTATTTTC-TTTATTCTA
1 TTTATTTTCATTT-TTCTA
*
8280653 TTTATTTTCATTTTTTTA
1 TTTATTTTCATTTTTCTA
8280671 TTTA
1 TTTA
8280675 ACACGTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTATTTTCATTTTTCTA
Found at i:8283473 original size:95 final size:95
Alignment explanation
Indices: 8283291--8283553 Score: 366
Period size: 95 Copynumber: 2.7 Consensus size: 95
8283281 AGATTATAAT
* *
8283291 ATTATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGGCTTTA
1 ATTATA-ATATACAATAAAGCTTGAGCTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTA
* *
8283356 TGGATAAGATTTAACTAGCCTGATAAAGGTG
65 TGGATAAGATTCAACTAACCTGATAAAGGTG
* * *
8283387 ATTATAATATACAATAAAGCTTGAGTTATCCCTCTAGAGAAATTGGTTAAACGCCCCAGCTTTAT
1 ATTATAATATACAATAAAGCTTGAGCTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTAT
* *
8283452 GGATAATATTCAGCTAACCTGATAAAGGTG
66 GGATAAGATTCAACTAACCTGATAAAGGTG
* * *
8283482 ATTATAATAT-CTATACAATGATATTAAGCTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCT
1 ATTATAATATACAATA-AA-G--CTTGAGCTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCT
8283546 TTATGGAT
62 TTATGGAT
8283554 TCAGCTAACC
Statistics
Matches: 148, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
94 4 0.03
95 92 0.62
96 7 0.05
98 45 0.30
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (95 bp):
ATTATAATATACAATAAAGCTTGAGCTGTCCCTCTAGAGAAATTGGTTAAACGCCCCGGCTTTAT
GGATAAGATTCAACTAACCTGATAAAGGTG
Found at i:8284910 original size:84 final size:84
Alignment explanation
Indices: 8284717--8285658 Score: 876
Period size: 84 Copynumber: 11.3 Consensus size: 84
8284707 TCTGTCAGCC
* * * * *
8284717 AAGACCTTCGTGTTCGACTACGCTCAGCTCCAAGACACATCATTTGCAGCATAACTCAAGGCAAA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
* *
8284782 AAGGGCTATCTACC-ACC-
66 AAGGGTTATCTGCCAACCA
* * * * *
8284799 AAGACCTTCGAGTTTGACTACGCTCAGCTCTAAGGCATATCATTTGCAGTATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
8284864 AAGGGTTATCTGCCAACCA
66 AAGGGTTATCTGCCAACCA
* * *
8284883 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
8284948 AAGGGTTATCTG----CCA
66 AAGGGTTATCTGCCAACCA
* * ** * * * * * * *
8284963 AAGACCCTCGAGTTCGATTAAACTCAGCTTCGAGGGTACATCATTTACAGTATAACTTAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCAA
*
8285028 GAAGGGTTATCTG-TAACCAA
65 GAAGGGTTATCTGCCAACC-A
* * * * *
8285048 AAGACCTTCGAGTTCGACTACGCTTAACTCCAAGGCATATCATTTACAACATAACTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
*
8285113 AAGGGTTATCTGCCAAACA
66 AAGGGTTATCTGCCAACCA
* * * * *
8285132 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCGAT
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
*
8285197 AAGGGCTATCT--C--CCA
66 AAGGGTTATCTGCCAACCA
* * * * * * * ** * * *
8285212 AAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGTACATCATTTATAGCATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCAA
* * * *
8285277 GAAGGGCTATATG-TAACTAA
65 GAAGGGTTATCTGCCAAC-CA
* *
8285297 AATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
*
8285362 AAGGGTTATCTACCAACCA
66 AAGGGTTATCTGCCAACCA
* * * * *
8285381 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAATGCGCATCATTTGTAGTATATCTTAAGTCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
*
8285446 AAGGGCTATCTGCCAA--A
66 AAGGGTTATCTGCCAACCA
* * * ** * * * * * * *
8285463 GA-ACC-TCGAGTTTGATTATACTCAGCTTCGAGGGCACACCATTTACAACATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTC-A
* *
8285526 A-AAGGGTTATTTGTC-ACCAA
64 AGAAGGGTTATCTGCCAACC-A
* * * * * ** *
8285546 AAGACCTTCGAGTTTGACCACACTCAGCCCCAAGGAACATCATTTGCAGCATCGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
* * *
8285611 AAGAGCTATCTGCCAACCG
66 AAGGGTTATCTGCCAACCA
* *
8285630 AAGACCTTCGAGTTCGATTACACTCAGCT
1 AAGACCTTCGAGTTCGACTACGCTCAGCT
8285659 TAGAGGTAAA
Statistics
Matches: 688, Mismatches: 149, Indels: 44
0.78 0.17 0.05
Matches are distributed among these distances:
80 70 0.10
81 114 0.17
82 72 0.10
83 6 0.01
84 352 0.51
85 74 0.11
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (84 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAG
AAGGGTTATCTGCCAACCA
Found at i:8285239 original size:249 final size:249
Alignment explanation
Indices: 8284753--8285658 Score: 1278
Period size: 249 Copynumber: 3.6 Consensus size: 249
8284743 GCTCCAAGAC
* * * * * * *
8284753 ACATCATTTGCAGCATAACTCAAGGCAAAAAGGG--CTATCT-ACCACCAAGACCTTCGAGTTTG
1 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTAACCA-AAAGACCTTCGAGTTCG
* * *
8284815 ACTACGCTCAGCTCTAAGGCATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAA
65 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAA
8284880 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTC
130 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTC
* *
8284945 GAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTAAACTCAGCTTCGAGGGT
195 GAGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTAAACTCAGCTTCGAGGGT
* * *
8285000 ACATCATTTACAGTATAACTTAAGGCTAGAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGA
1 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTAACCAAAAGACCTTCGAGTTCGA
* * * * *
8285065 CTACGCTTAACTCCAAGGCATATCATTTACAACATAACTTAAGTCAAGAAGGGTTATCTGCCAAA
66 CTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC
*
8285130 CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCG
131 CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCG
* * *
8285195 ATAAGGGCTATCTCCCAAAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGT
196 AGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTAAACTCAGCTTCGAGGGT
* * * *
8285249 ACATCATTTATAGCATAACTCAAGGCTAGAAGGGCTATATGTAACTAAAATACCTTCGAGTTCGA
1 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTAACCAAAAGACCTTCGAGTTCGA
*
8285314 CTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTACCAAC
66 CTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC
* * * * *
8285379 CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAATGCGCATCATTTGTAGTATATCTTAAGTCA
131 CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCG
* * *
8285444 AGAAGGGCTATCTGCCAAAGAACCTCGAGTTTGATTATACTCAGCTTCGAGGGC
196 AGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTAAACTCAGCTTCGAGGGT
* * * * * *
8285498 ACACCATTTACAACATAACTCAAGGCTAAAAGGGTTATTTGTCACCAAAAGACCTTCGAGTTTGA
1 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTAACCAAAAGACCTTCGAGTTCGA
* * * * * ** * * *
8285563 CCACACTCAGCCCCAAGGAACATCATTTGCAGCATCGCTTAAGTCGAGAAGAGCTATCTGCCAAC
66 CTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC
* * *
8285628 CGAAGACCTTCGAGTTCGATTACACTCAGCT
131 CAAAGACCTTCGAGTTCGACTACGCTCAGCT
8285659 TAGAGGTAAA
Statistics
Matches: 584, Mismatches: 72, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
247 29 0.05
249 551 0.94
250 4 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (249 bp):
ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTAACCAAAAGACCTTCGAGTTCGA
CTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC
CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTCG
AGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTAAACTCAGCTTCGAGGGT
Found at i:8286651 original size:3 final size:3
Alignment explanation
Indices: 8286643--8286689 Score: 60
Period size: 3 Copynumber: 15.0 Consensus size: 3
8286633 TTTTTCTTAC
8286643 TAT TAT TAT TA- TAT ATACT TCAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TA-T T-AT TAT TAT TAT TAT TAT TAT TAT TAT
8286690 ATTTTATATG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 2 0.05
3 31 0.77
4 5 0.12
5 2 0.05
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:8286996 original size:3 final size:3
Alignment explanation
Indices: 8286983--8287034 Score: 77
Period size: 3 Copynumber: 17.3 Consensus size: 3
8286973 CTTTACTTAA
* * *
8286983 TAT TTT TAT TAT TAG TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8287031 TAT T
1 TAT T
8287035 CTATTTTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8287049 original size:9 final size:10
Alignment explanation
Indices: 8286983--8287048 Score: 63
Period size: 9 Copynumber: 7.1 Consensus size: 10
8286973 CTTTACTTAA
8286983 TATT-TTTAT
1 TATTATTTAT
*
8286992 TATTA-GTAT
1 TATTATTTAT
8287001 TATTA-TTAT
1 TATTATTTAT
8287010 TATTA-TTAT
1 TATTATTTAT
*
8287019 TATTA-CTAT
1 TATTATTTAT
8287028 TATTATTCTAT
1 TATTATT-TAT
8287039 T-TTATTTAT
1 TATTATTTAT
8287048 T
1 T
8287049 TCTATTTGCC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
9 41 0.82
10 5 0.10
11 4 0.08
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (10 bp):
TATTATTTAT
Found at i:8289744 original size:60 final size:60
Alignment explanation
Indices: 8289680--8289806 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 60
8289670 AAAAATATAT
* * ** * * *
8289680 TTACATTAATATAATTATGTGTTTATTTTTAGGTACTAATATATTGGGAGATATAAATAC
1 TTACACTAATATAAGTATGCATTTATTTTTAGGTACCAAGATATTGAGAGATATAAATAC
** * * *
8289740 TTACACTGGTGTAAGTATGCATTTATTTTTAGGTACCAAGATATTGAGAGATGTACATAC
1 TTACACTAATATAAGTATGCATTTATTTTTAGGTACCAAGATATTGAGAGATATAAATAC
8289800 TTACACT
1 TTACACT
8289807 TGTGCAAGTA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (60 bp):
TTACACTAATATAAGTATGCATTTATTTTTAGGTACCAAGATATTGAGAGATATAAATAC
Found at i:8289816 original size:60 final size:60
Alignment explanation
Indices: 8289701--8289818 Score: 173
Period size: 60 Copynumber: 2.0 Consensus size: 60
8289691 TAATTATGTG
* * * *
8289701 TTTATTTTTAGGTACTAATATATTGGGAGATATAAATACTTACACTGGTGTAAGTATGCA
1 TTTATTTTTAGGTACCAAGATATTGAGAGATATAAATACTTACACTGGTGCAAGTATGCA
* * *
8289761 TTTATTTTTAGGTACCAAGATATTGAGAGATGTACATACTTACACTTGTGCAAGTATG
1 TTTATTTTTAGGTACCAAGATATTGAGAGATATAAATACTTACACTGGTGCAAGTATG
8289819 TGTTAATTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (60 bp):
TTTATTTTTAGGTACCAAGATATTGAGAGATATAAATACTTACACTGGTGCAAGTATGCA
Found at i:8294503 original size:19 final size:19
Alignment explanation
Indices: 8294457--8294505 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
8294447 ACCGGTTTTC
8294457 AACCGGTTTGATCGGTTCG
1 AACCGGTTTGATCGGTTCG
**
8294476 AACTAGTTTGATCGG-TCTG
1 AACCGGTTTGATCGGTTC-G
8294495 AACCGGTTTGA
1 AACCGGTTTGA
8294506 CTGACCCGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 2 0.08
19 23 0.92
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (19 bp):
AACCGGTTTGATCGGTTCG
Found at i:8298699 original size:190 final size:188
Alignment explanation
Indices: 8298377--8298755 Score: 715
Period size: 190 Copynumber: 2.0 Consensus size: 188
8298367 ACCCAGGATT
8298377 GATGATTTATTTGATCAATTGCGAGGAGCTACTGTATTCTAAGATTGATCTTCGTTCGGGGTATT
1 GATGATTTATTTGATCAATTGCGAGGAGCTACTGTATTCTAAGATTGATCTTCGTTCGGGGTATT
8298442 ATCATTGAAAGTTAAAGGATCAGATATTGCAAAAACGGCTATTCGCACTAATATGGTCATTATGA
66 ATCATTGAAAGTTAAAGGATCAGATATTGCAAAAACGGC-ATTCGCACTAATATGGTCATTATGA
8298507 ATTCTTAGTGATGCCTTTTGGTTTGATGAACGCTCCTGCAGCTTTCATGGATTTGATGA
130 ATTCTTAGTGATGCCTTTTGGTTTGATGAACGCTCCTGCAGCTTTCATGGATTTGATGA
8298566 GATGATTTATTTGATCAATTGCGAGGAGCTACTGTATTTCTAAGATTGATCTTCGTTCGGGGTAT
1 GATGATTTATTTGATCAATTGCGAGGAGCTACTGTA-TTCTAAGATTGATCTTCGTTCGGGGTAT
8298631 TATCAATTGAAAGTTAAAGGATCAGATATTGCAAAAACGGC-TTCGCACTAGATATGGTCATTAT
65 TATC-ATTGAAAGTTAAAGGATCAGATATTGCAAAAACGGCATTCGCACTA-ATATGGTCATTAT
8298695 GAATTCTTAGTGATGCCTTTTGGTTTGATGAACGCTCCTGCAGCTTTCATGGATTTGATGA
128 GAATTCTTAGTGATGCCTTTTGGTTTGATGAACGCTCCTGCAGCTTTCATGGATTTGATGA
8298756 ATCGGGTGTT
Statistics
Matches: 187, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
189 45 0.24
190 106 0.57
191 36 0.19
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (188 bp):
GATGATTTATTTGATCAATTGCGAGGAGCTACTGTATTCTAAGATTGATCTTCGTTCGGGGTATT
ATCATTGAAAGTTAAAGGATCAGATATTGCAAAAACGGCATTCGCACTAATATGGTCATTATGAA
TTCTTAGTGATGCCTTTTGGTTTGATGAACGCTCCTGCAGCTTTCATGGATTTGATGA
Found at i:8301724 original size:10 final size:10
Alignment explanation
Indices: 8301709--8301787 Score: 73
Period size: 10 Copynumber: 8.3 Consensus size: 10
8301699 CCAGTTTTCA
8301709 ACCGGTTCTG
1 ACCGGTTCTG
8301719 ACCGGTTC-G
1 ACCGGTTCTG
8301728 AACCGGTT-TG
1 -ACCGGTTCTG
8301738 ACCGG-TCTG
1 ACCGGTTCTG
*
8301747 AACCAGTT-TG
1 -ACCGGTTCTG
8301757 ACCGG-TCTG
1 ACCGGTTCTG
8301766 AACCGGTT-TG
1 -ACCGGTTCTG
8301776 ACCGG-TCTG
1 ACCGGTTCTG
8301785 ACC
1 ACC
8301788 CGACCGACCC
Statistics
Matches: 58, Mismatches: 2, Indels: 19
0.73 0.03 0.24
Matches are distributed among these distances:
8 3 0.05
9 24 0.41
10 29 0.50
11 2 0.03
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.25
Consensus pattern (10 bp):
ACCGGTTCTG
Found at i:8301741 original size:19 final size:19
Alignment explanation
Indices: 8301708--8301785 Score: 122
Period size: 19 Copynumber: 4.1 Consensus size: 19
8301698 ACCAGTTTTC
8301708 AACCGGTTCTGACCGGT-TCG
1 AACCGGTT-TGACCGGTCT-G
8301728 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
8301747 AACCAGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
8301766 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
8301785 A
1 A
8301786 CCCGACCGAC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
19 46 0.84
20 9 0.16
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:8301813 original size:15 final size:14
Alignment explanation
Indices: 8301784--8301822 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
8301774 TGACCGGTCT
8301784 GACCCGACCGACCC
1 GACCCGACCGACCC
8301798 GACCCGACCTGACCC
1 GACCCGACC-GACCC
*
8301813 GACCGGACCG
1 GACCCGACCG
8301823 TTGACCGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.21, C:0.51, G:0.26, T:0.03
Consensus pattern (14 bp):
GACCCGACCGACCC
Found at i:8301822 original size:5 final size:5
Alignment explanation
Indices: 8301784--8301821 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
8301774 TGACCGGTCT
* *
8301784 GACCC GA-CC GACCC GACCC GACCT GACCC GACCG GACC
1 GACCC GACCC GACCC GACCC GACCC GACCC GACCC GACC
8301822 GTTGACCGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.21, C:0.53, G:0.24, T:0.03
Consensus pattern (5 bp):
GACCC
Found at i:8304088 original size:20 final size:20
Alignment explanation
Indices: 8304063--8304101 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8304053 GTTTTCTAGG
8304063 TTGTAGTATCGATACTATTC
1 TTGTAGTATCGATACTATTC
8304083 TTGTAGTATCGATACTATT
1 TTGTAGTATCGATACTATT
8304102 ATTACAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (20 bp):
TTGTAGTATCGATACTATTC
Found at i:8304112 original size:20 final size:20
Alignment explanation
Indices: 8304069--8304112 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
8304059 TAGGTTGTAG
* ** *
8304069 TATCGATACTATTCTTGTAG
1 TATCGATACTATTATTACAA
8304089 TATCGATACTATTATTACAA
1 TATCGATACTATTATTACAA
8304109 TATC
1 TATC
8304113 TGTATTTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (20 bp):
TATCGATACTATTATTACAA
Found at i:8304178 original size:15 final size:15
Alignment explanation
Indices: 8304158--8304188 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8304148 AATACTATTG
8304158 TAGTACCAATAATGT
1 TAGTACCAATAATGT
*
8304173 TAGTACCAATATTGT
1 TAGTACCAATAATGT
8304188 T
1 T
8304189 TTAATACCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (15 bp):
TAGTACCAATAATGT
Found at i:8310145 original size:20 final size:20
Alignment explanation
Indices: 8310116--8310157 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8310106 GATATTGAGC
8310116 CCCTTCAGTATTGATACTAA
1 CCCTTCAGTATTGATACTAA
* *
8310136 CCCTTGAGTATTGATATTAA
1 CCCTTCAGTATTGATACTAA
8310156 CC
1 CC
8310158 TCTGGGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.36
Consensus pattern (20 bp):
CCCTTCAGTATTGATACTAA
Found at i:8313702 original size:178 final size:178
Alignment explanation
Indices: 8313403--8313764 Score: 688
Period size: 178 Copynumber: 2.0 Consensus size: 178
8313393 AGTGTTTAAG
* *
8313403 TATGTTAAGGTTTTTGCTTGATTTATGCCATAAATGACATTCTATTTCATCCCCAAACTATGACA
1 TATGTTAAGGGTTTCGCTTGATTTATGCCATAAATGACATTCTATTTCATCCCCAAACTATGACA
8313468 TTCATTCTAAATTAGTCTCCAAACTTTTTGAACATTCCAATTGTATCCTAACTATACATATATAC
66 TTCATTCTAAATTAGTCTCCAAACTTTTTGAACATTCCAATTGTATCCTAACTATACATATATAC
8313533 TTATCACATTCATTGTCAATAAAATCGTTAGGCCAAGTTATATTATTA
131 TTATCACATTCATTGTCAATAAAATCGTTAGGCCAAGTTATATTATTA
8313581 TATGTTAAGGGTTTCGCTTGATTTATGCCATAAATGACATTCTATTTCATCCCCAAACTATGACA
1 TATGTTAAGGGTTTCGCTTGATTTATGCCATAAATGACATTCTATTTCATCCCCAAACTATGACA
* *
8313646 TTCATTCTAAATTAGTCTTCAAACTTTTTGAACATTCCAATTGTATCCTAACTATACGTATATAC
66 TTCATTCTAAATTAGTCTCCAAACTTTTTGAACATTCCAATTGTATCCTAACTATACATATATAC
8313711 TTATCACATTCATTGTCAATAAAATCGTTAGGCCAAGTTATATTATTA
131 TTATCACATTCATTGTCAATAAAATCGTTAGGCCAAGTTATATTATTA
8313759 TATGTT
1 TATGTT
8313765 TGCAAAAACA
Statistics
Matches: 180, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
178 180 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (178 bp):
TATGTTAAGGGTTTCGCTTGATTTATGCCATAAATGACATTCTATTTCATCCCCAAACTATGACA
TTCATTCTAAATTAGTCTCCAAACTTTTTGAACATTCCAATTGTATCCTAACTATACATATATAC
TTATCACATTCATTGTCAATAAAATCGTTAGGCCAAGTTATATTATTA
Found at i:8323399 original size:17 final size:17
Alignment explanation
Indices: 8323377--8323419 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
8323367 CATTGATCAA
8323377 CAACAAGAAACAAAAAT
1 CAACAAGAAACAAAAAT
8323394 CAACAAGAAACAAAAAT
1 CAACAAGAAACAAAAAT
8323411 CAACAAGAA
1 CAACAAGAA
8323420 TCAAGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.70, C:0.19, G:0.07, T:0.05
Consensus pattern (17 bp):
CAACAAGAAACAAAAAT
Found at i:8326599 original size:207 final size:204
Alignment explanation
Indices: 8326247--8326653 Score: 787
Period size: 207 Copynumber: 2.0 Consensus size: 204
8326237 TTATGAGCTT
8326247 CTTCATCATTTTCCATTTAGTCAGAATGTAGAGATTTGAAATTGTAATCAATTAAAAGTTCTTAA
1 CTTCATCATTTTCCATTTAGTCAGAATGTAGAGATTTGAAATTGTAATCAATTAAAAGTTCTTAA
8326312 AACTTGAATCCAATTACCATTTAAAGAACAATTACATGATACATTGATACTTACTAGGGCTCCCT
66 AACTTGAATCCAATTACCATTTAAAGAACAATTACATGATACATTGATACTTACTAGGGCTCCCT
8326377 CCATTTGAAGGTCATCACCATCGGAGTGGAAGAGTTCTCTGCCTTTAGGGTTTTTCGATTTGAGT
131 CCATTTGAAGGTCATCACCATCGGAGTGGAAGAGTTCTCTGCCTTTAGGGTTTTTCGATTTGAGT
8326442 TTTGTCTTC
196 TTTGTCTTC
8326451 CTTCATCATTTTCCATTTAGTCAGAATGTAGAGATTTGAAATTTGTAATCAATTAAAAGTTCTTA
1 CTTCATCATTTTCCATTTAGTCAGAATGTAGAGATTTGAAA-TTGTAATCAATTAAAAGTTCTT-
8326516 AAAACTTGAATCCAATTACCATTTAAAGAACAATTACATGAATACATTGATACTTACTAGGGCTC
64 AAAACTTGAATCCAATTACCATTTAAAGAACAATTACATG-ATACATTGATACTTACTAGGGCTC
8326581 CCTCCATTTGAAGGTCATCACCATCGGAGTGGAAGAGTTCTCTGCCTTTAGGGTTTTTCGATTTG
128 CCTCCATTTGAAGGTCATCACCATCGGAGTGGAAGAGTTCTCTGCCTTTAGGGTTTTTCGATTTG
8326646 AGTTTTGT
193 AGTTTTGT
8326654 ATAAAAATAA
Statistics
Matches: 200, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
204 41 0.20
205 22 0.11
206 40 0.20
207 97 0.49
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (204 bp):
CTTCATCATTTTCCATTTAGTCAGAATGTAGAGATTTGAAATTGTAATCAATTAAAAGTTCTTAA
AACTTGAATCCAATTACCATTTAAAGAACAATTACATGATACATTGATACTTACTAGGGCTCCCT
CCATTTGAAGGTCATCACCATCGGAGTGGAAGAGTTCTCTGCCTTTAGGGTTTTTCGATTTGAGT
TTTGTCTTC
Found at i:8327137 original size:199 final size:198
Alignment explanation
Indices: 8326753--8327221 Score: 588
Period size: 199 Copynumber: 2.4 Consensus size: 198
8326743 TTCTATTTAC
* * *
8326753 ACCGATAAATTTCAACCAGTTACATTGTAAATTGACCTATTACATTATAATTTTTGATTTCGATG
1 ACCGATAAATTTAAACCGGTTACATTGTAAATTGACCTATTACATTATAATTTTAGATTTCGATG
* * * * * *
8326818 TATTTGAGGTCGATACTTTTTATAAATATATCGAAACTTTATGCGTGGACATCGGTTGGCATTAA
66 TATTTGAGGTCGATACCTTTAATAAATATATCGAAACTTTAAGCGTGCACATAGGTTGGAATTAA
* *
8326883 TTATGGATATAAGTATCGACACAAATGTAAAAAGTATCGATACATTATGTAGACCTATTTCCTCA
131 TTATGGATAAAAGTATCGA-ACAAATGAAAAAAGTATCGATACATTATGTAGACCTATTTCCTCA
8326948 TAAA
195 TAAA
*
8326952 ACCGATAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTTTCAG-TCTT-GA
1 ACCGATAAATTTAAACCGGTTACATTGTAAATTGACCTATTACATTATAATTTT-AGAT-TTCGA
* * * *
8327015 TGTATTTGGGGTCGATACCTTTAATAAATGTATCGACACTTTAAGCGTGCACATAGTTTGAGAAT
64 TGTATTTGAGGTCGATACCTTTAATAAATATATCGAAACTTTAAGCGTGCACATAGGTTG-GAAT
* * * * *
8327080 TCATTATGGATAAAAAGTATCG-ACAAAT-AAATAAAGTGTCGATATATTATTTAGACCTATTTT
128 TAATTATGGAT-AAAAGTATCGAACAAATGAAA-AAAGTATCGATACATTATGTAGACCTATTTC
8327143 CTCATAAA
191 CTCATAAA
* * * * * *
8327151 ACC-AGTAAATTTAAACCGATTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGAT
1 ACCGA-TAAATTTAAACCGGTTACATTGTAAATTGACCTATTACATTATAATTTTAGATTTCGAT
*
8327215 GTTTTTG
65 GTATTTG
8327222 GGATCTCCAC
Statistics
Matches: 234, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
198 6 0.03
199 203 0.87
200 16 0.07
201 9 0.04
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (198 bp):
ACCGATAAATTTAAACCGGTTACATTGTAAATTGACCTATTACATTATAATTTTAGATTTCGATG
TATTTGAGGTCGATACCTTTAATAAATATATCGAAACTTTAAGCGTGCACATAGGTTGGAATTAA
TTATGGATAAAAGTATCGAACAAATGAAAAAAGTATCGATACATTATGTAGACCTATTTCCTCAT
AAA
Found at i:8327296 original size:199 final size:196
Alignment explanation
Indices: 8326893--8327670 Score: 556
Period size: 199 Copynumber: 3.9 Consensus size: 196
8326883 TTATGGATAT
* * * *
8326893 AAGTATCGACACAAATGTAA-AAAGTATCGATACATTATGTAGACCTATTTCCTCATAAAACCGA
1 AAGTATCG--ACAAATATAATAAAGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCG-
* * * * * *
8326957 TAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTTTCAGTCTT-GATGTATT
63 TAAATTTAAACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGAGT-TTCGATGTTTT
* * * * * * * * *
8327021 TGGGGTCGATAC-CTTTAATAAATGTATCGACACTTTAAGCGTGCACATAG-TTTGAGAATTCAT
127 TGGGATC--TACACTTTTATAAATGTATCGACACTTT--G-TTGCACTTGGTTTTTAAAATACAC
** *
8327084 TATGGATAAA
187 GCTGGAAAAA
*
8327094 AAGTATCGACAAATA-AATAAAGTGTCGATATATTATTTAGACCTATTTTCTCATAAAACCAGTA
1 AAGTATCGACAAATATAATAAAGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACC-GTA
* *
8327158 AATTTAAACCGATTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
65 AATTTAAACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGG
*
8327223 GATCTCCACTTATTATAAATGTATCGACACTTTGTTGACCACTTGGTTTTTAAAATACACGCTGG
130 GATCTACACTT-TTATAAATGTATCGACACTTTGTTG--CACTTGGTTTTTAAAATACACGCTGG
8327288 AAAAA
192 AAAAA
** ** ** * ** *
8327293 AAGTATCGACACTTATTGTATTTGTGTCGATACT-TTATGTATATTTGTTTTCTCA-AAAACCGG
1 AAGTATCGACAAATATAATA-AAGTGTCGATA-TATTATGTAGACCTATTTTCTCATAAAACC-G
* ** * * *
8327356 TATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCTATGTGTTTCTATGTTTT
63 TAAATTTAAACCGGTTACATTGTTAATTTACCTATTACATTATAAT-TATGAGTTTCGATGTTTT
* * * * *
8327420 TAGTATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTATAAAATACACGC
127 TGGGATCTACACTT-TTATAAATGTATCGACACTTTGT--TGCACTTGGTTTTTAAAATACACGC
*
8327485 TGGACAAA
189 TGGAAAAA
* ** ** *** * * *
8327493 AAGTATCAACACTTATTGTATTTTTGTCGATACT-TTATGTATA--TATGTTTTTCTTAAAAATC
1 AAGTATCGACAAATATAATA-AAGTGTCGATA-TATTATGTAGACCTAT-TTTCTCAT-AAAA-C
* * ** * * ** *
8327555 GGTATATTTAGGCTGGTTACATTGTTATTTTACCTATTACATTAT-A-TCCGTGTTTCGATGTTT
61 CGTAAATTTAAACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGAGTTTCGATGTTT
* * * * *
8327618 TTAGTATCGACACTTGTTATAAATGTATAGACACTTTTTCCTGCACTTGGTTT
126 TTGGGATCTACACTT-TTATAAATGTATCGACACTTTGT--TGCACTTGGTTT
8327671 GGAAATACAT
Statistics
Matches: 493, Mismatches: 66, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
196 2 0.00
197 3 0.01
198 14 0.03
199 223 0.45
200 166 0.34
201 81 0.16
202 4 0.01
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (196 bp):
AAGTATCGACAAATATAATAAAGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCGTAA
ATTTAAACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGG
ATCTACACTTTTATAAATGTATCGACACTTTGTTGCACTTGGTTTTTAAAATACACGCTGGAAAA
A
Found at i:8327419 original size:200 final size:201
Alignment explanation
Indices: 8327139--8327656 Score: 749
Period size: 200 Copynumber: 2.6 Consensus size: 201
8327129 TTTAGACCTA
* * ** * *
8327139 TTTTCTCATAAAACCAGTAAATTTAAACCGATTACATTGTTAATTTACCTATTACATTATAAT-T
1 TTTTCTCA-AAAACCGGTATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCT
* * * ** *
8327203 ATGGGTTTCGATGTTTTTGGGATCTCCACTTATTATAAATGTATCGACACTTTGTT-GACCACTT
64 ATGTGTTTCGATGTTTTTAGTATCGACACTTGTTATAAATGTATCGACACTTT-TTAGACCACTT
* *
8327267 GGTTTTTAAAATACACGCTGGAAAAAAAGTATCGACACTTATTGTATTTGTGTCGATACTTTATG
128 GGTTTATAAAATACACGCTGGAAAAAAAGTATCAACACTTATTGTATTTGTGTCGATACTTTATG
*
8327332 TATATTTG-
193 TATATATGT
8327340 TTTTCTCAAAAACCGGTATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTAT
1 TTTTCTCAAAAACCGGTATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTAT
* **
8327405 GTGTTTCTATGTTTTTAGTATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGT
66 GTGTTTCGATGTTTTTAGTATCGACACTTGTTATAAATGTATCGACACTTTTTAGACCACTTGGT
* *
8327470 TTATAAAATACACGCTGGACAAAAAGTATCAACACTTATTGTATTTTTGTCGATACTTTATGTAT
131 TTATAAAATACACGCTGGAAAAAAAGTATCAACACTTATTGTATTTGTGTCGATACTTTATGTAT
8327535 ATATGT
196 ATATGT
* * * *
8327541 TTTTCTTAAAAATCGGTATATTTAGGCTGGTTACATTGTTATTTTACCTATTACATTATATC--C
1 TTTTCTCAAAAACCGGTATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTAT
*
8327604 GTGTTTCGATGTTTTTAGTATCGACACTTGTTATAAATGTATAGACACTTTTT
66 GTGTTTCGATGTTTTTAGTATCGACACTTGTTATAAATGTATCGACACTTTTT
8327657 CCTGCACTTG
Statistics
Matches: 288, Mismatches: 26, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
199 55 0.19
200 166 0.58
201 67 0.23
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (201 bp):
TTTTCTCAAAAACCGGTATATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTAT
GTGTTTCGATGTTTTTAGTATCGACACTTGTTATAAATGTATCGACACTTTTTAGACCACTTGGT
TTATAAAATACACGCTGGAAAAAAAGTATCAACACTTATTGTATTTGTGTCGATACTTTATGTAT
ATATGT
Found at i:8327924 original size:24 final size:24
Alignment explanation
Indices: 8327887--8327933 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8327877 ATTTACATTT
8327887 AAATTCAAACTCAAACTCAAATTG
1 AAATTCAAACTCAAACTCAAATTG
* * *
8327911 AAATTTAAATTCAAACTCTAATT
1 AAATTCAAACTCAAACTCAAATT
8327934 ATAAATGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (24 bp):
AAATTCAAACTCAAACTCAAATTG
Found at i:8330184 original size:2 final size:2
Alignment explanation
Indices: 8330177--8330208 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8330167 GTTTCCGGAG
8330177 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8330209 CCTTCACCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8330582 original size:15 final size:15
Alignment explanation
Indices: 8330528--8330584 Score: 71
Period size: 14 Copynumber: 3.7 Consensus size: 15
8330518 TGGCGATTAT
8330528 TTGAGAAGGAGGTTGTGG
1 TTGAGAA-GAGG-TG-GG
*
8330546 TTGAGAAGAGCTGGG
1 TTGAGAAGAGGTGGG
8330561 TTG-GAAGAGGTGGG
1 TTGAGAAGAGGTGGG
8330575 TTGAGAAGAG
1 TTGAGAAGAG
8330585 CTTTGAGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
14 13 0.36
15 11 0.31
16 2 0.06
17 3 0.08
18 7 0.19
ACGTcount: A:0.26, C:0.02, G:0.49, T:0.23
Consensus pattern (15 bp):
TTGAGAAGAGGTGGG
Found at i:8331385 original size:199 final size:198
Alignment explanation
Indices: 8330932--8331633 Score: 983
Period size: 199 Copynumber: 3.5 Consensus size: 198
8330922 TTTTCAAATT
* *
8330932 AAACTGGTATTTTTATACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
1 AAACTGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
* * * * *
8330997 TGTTTTTGGGATCGACACTTGTTATAAATGTATTGACACTTTGTTGTGCACTTGGTTTTTAAAAT
66 TATTTTTGGGATCGACACTTCTTATAAATGTATCGACACTTT-TAGTGCACTTGG-TTTTGAAAT
* * ** * *
8331062 ACACTCTGGACAAAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACCTGTTTT
129 ACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTT
*
8331127 CTCAT
194 CTCAA
* * * *
8331132 AAACCGGTATGTTTAGACTGATTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
1 AAACTGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
* ** *
8331197 TGTTTTCAGGATCGACACTTCTTATAAATGTATCAACACTCTTTAGTGCACTTGGTTTTGAAATA
66 TATTTTTGGGATCGACACTTCTTATAAATGTATCGACACT-TTTAGTGCACTTGGTTTTGAAATA
* *
8331262 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTTGATACTTTTTGTACACATGTTTTC
130 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
8331327 TCAA
195 TCAA
* * * *
8331331 AAACTGGTATATTTAGACCAGTTAAATTGTAAATTTACCTATTACATCATAATTATGGGTTTCGA
1 AAACTGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
* * **
8331396 TATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTAAGAAATA
66 TATTTTTGGGATCGACACTTCTTATAAATGTATCGACAC-TTTTAGTGCACTTGGTTTTGAAATA
* * * * *
8331461 CATTCTAGACCAAAAGTATCGACACTTGTTTTAGTTATGTCGATACATTTTGTACACCTATTTTC
130 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
8331526 TCAA
195 TCAA
* *
8331530 AAA-TCGGTATATTTAGACTGGTTACATTGCTAATTTACCTATTACATTATAATTATGGGTTTCG
1 AAACT-GGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCG
* *
8331594 ATATTTTTGGGATCGACACTTCTTATAAATGAATAGACAC
65 ATATTTTTGGGATCGACACTTCTTATAAATGTATCGACAC
8331634 ATAAGTTTAC
Statistics
Matches: 446, Mismatches: 53, Indels: 7
0.88 0.10 0.01
Matches are distributed among these distances:
198 1 0.00
199 336 0.75
200 107 0.24
201 2 0.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.41
Consensus pattern (198 bp):
AAACTGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
TATTTTTGGGATCGACACTTCTTATAAATGTATCGACACTTTTAGTGCACTTGGTTTTGAAATAC
ATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCT
CAA
Found at i:8334113 original size:22 final size:21
Alignment explanation
Indices: 8334085--8334141 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
8334075 AACCTGCATT
*
8334085 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
8334107 TATAATAACTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
*
8334131 TATAAAAAAAC
1 TATAATAAAAC
8334142 AAAAATATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
24 18 0.60
25 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:8335425 original size:19 final size:19
Alignment explanation
Indices: 8335397--8335484 Score: 140
Period size: 19 Copynumber: 4.6 Consensus size: 19
8335387 TATTTATACA
* *
8335397 ACCTAAAATATCATTTTCT
1 ACCTATAATATCATTTTTT
8335416 ACCTATAATATCATTTTTTT
1 ACCTATAATATCA-TTTTTT
8335436 ACCTATAATATCATTTTTT
1 ACCTATAATATCATTTTTT
8335455 ACCTATAATATCATTTTTT
1 ACCTATAATATCATTTTTT
*
8335474 ACATATAATAT
1 ACCTATAATAT
8335485 TAAATAAAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
19 47 0.72
20 18 0.28
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (19 bp):
ACCTATAATATCATTTTTT
Found at i:8335451 original size:39 final size:38
Alignment explanation
Indices: 8335397--8335484 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 38
8335387 TATTTATACA
*
8335397 ACCTAAAATATCATTTTCTACCTATAATATCATTTTTTT
1 ACCTATAATATCATTTTCTACCTATAATATCA-TTTTTT
*
8335436 ACCTATAATATCATTTTTTACCTATAATATCATTTTTT
1 ACCTATAATATCATTTTCTACCTATAATATCATTTTTT
*
8335474 ACATATAATAT
1 ACCTATAATAT
8335485 TAAATAAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 16 0.35
39 30 0.65
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (38 bp):
ACCTATAATATCATTTTCTACCTATAATATCATTTTTT
Found at i:8336185 original size:183 final size:182
Alignment explanation
Indices: 8335865--8336514 Score: 970
Period size: 183 Copynumber: 3.6 Consensus size: 182
8335855 TTATTACGCG
**
8335865 TACTTAT-TT-AAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTTG
1 TACTTATATTAAAGTATCGACACTTTCAACATATCCGGTAGCTTTTTACCGGTTTTGTCATTTTG
* * *
8335928 AGACCGGTTTTTATCATATTTTTACCTGTTATATTGTTATGGGTCGATACATTTTTTAAAAGTAT
66 AGACC-GATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTAT
8335993 CGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
130 CGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* * *
8336046 TACTTATATTAAATTATCGACACTTTCAACATATCCGGTATCTTTTTACCGGTTATGTCATTTTT
1 TACTTATATTAAAGTATCGACACTTTCAACATATCCGGTAGCTTTTTACCGGTTTTGTCA-TTTT
* *
8336111 TAGACCTATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTAT
65 GAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTAT
8336176 CGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
130 CGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* *
8336229 TACTTATA-TAAAGTATGGACACTTTCAACATATCCGGTAG-TTATTTACCAGTTTTGTCATTTT
1 TACTTATATTAAAGTATCGACACTTTCAACATATCCGGTAGCTT-TTTACCGGTTTTGTCATTTT
* * * * ** *
8336292 GAAACCGGTTTTGTCATATTTTTAGCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGT
65 GAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTAT
* * *
8336357 TGACACTTTTTAGGCTCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGA
130 CGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGA
* * *
8336410 TACTTATATTAAATTATCGACAATTTCAACATATCTGGTAGCTTTTTACCGGTTTTGTCATTTTG
1 TACTTATATTAAAGTATCGACACTTTCAACATATCCGGTAGCTTTTTACCGGTTTTGTCATTTTG
* * *
8336475 AGACCGATTTTGTCATA-TTTTACCTGTAATATTGCTATGG
66 AGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGG
8336515 TCATATTTTT
Statistics
Matches: 425, Mismatches: 37, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
180 2 0.00
181 144 0.34
182 108 0.25
183 162 0.38
184 9 0.02
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (182 bp):
TACTTATATTAAAGTATCGACACTTTCAACATATCCGGTAGCTTTTTACCGGTTTTGTCATTTTG
AGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATC
GACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
Found at i:8336530 original size:29 final size:28
Alignment explanation
Indices: 8336486--8336543 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 28
8336476 GACCGATTTT
8336486 GTCATATTTTACCTGTAATATTGCTATG
1 GTCATATTTTACCTGTAATATTGCTATG
8336514 GTCATATTTTTACCTGTAATATTGCTATG
1 GTCATA-TTTTACCTGTAATATTGCTATG
8336543 G
1 G
8336544 AGCGATACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.47
Consensus pattern (28 bp):
GTCATATTTTACCTGTAATATTGCTATG
Found at i:8339611 original size:25 final size:24
Alignment explanation
Indices: 8339583--8339629 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8339573 GTAAATGAAT
8339583 GTACTAAATACAAGAGTACACAATG
1 GTACT-AATACAAGAGTACACAATG
* *
8339608 GTACTAATACGAGAGTGCACAA
1 GTACTAATACAAGAGTACACAA
8339630 AGCACTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (24 bp):
GTACTAATACAAGAGTACACAATG
Found at i:8339719 original size:24 final size:24
Alignment explanation
Indices: 8339620--8339734 Score: 65
Period size: 24 Copynumber: 4.8 Consensus size: 24
8339610 ACTAATACGA
* *
8339620 GAGTGCAC-AAAGCACTAATGCAG
1 GAGTGCACGAATGCACTAATTCAG
** * * * *
8339643 GAGTGCTGGAA-GGACTCATACAT
1 GAGTGCACGAATGCACTAATTCAG
* ** *
8339666 GAGTACACGAATGTGCTAGAATCAG
1 GAGTGCACGAATGCACTA-ATTCAG
*
8339691 AAGTGCACGAATGCACTAATTCAG
1 GAGTGCACGAATGCACTAATTCAG
*
8339715 GAGTGCA-AAATTGCACTAAT
1 GAGTGCACGAA-TGCACTAAT
8339735 ACATGAGTTC
Statistics
Matches: 66, Mismatches: 22, Indels: 7
0.69 0.23 0.07
Matches are distributed among these distances:
23 24 0.36
24 25 0.38
25 17 0.26
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (24 bp):
GAGTGCACGAATGCACTAATTCAG
Found at i:8339742 original size:24 final size:24
Alignment explanation
Indices: 8339700--8339800 Score: 82
Period size: 23 Copynumber: 4.3 Consensus size: 24
8339690 GAAGTGCACG
* *
8339700 AATGCACTAATTCAGGAGTGCA-A
1 AATGCACTAATACATGAGTGCATA
*
8339723 AATTGCACTAATACATGAGTTCATA
1 AA-TGCACTAATACATGAGTGCATA
* **
8339748 AA-GCACTGATACATGAGTGCGCA
1 AATGCACTAATACATGAGTGCATA
* * * *
8339771 AA-GCATTGATACAGGAGTGCATG
1 AATGCACTAATACATGAGTGCATA
8339794 AATGCAC
1 AATGCAC
8339801 CAATCAAGAT
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
23 39 0.63
24 20 0.32
25 3 0.05
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (24 bp):
AATGCACTAATACATGAGTGCATA
Found at i:8349304 original size:19 final size:19
Alignment explanation
Indices: 8349280--8349327 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
8349270 ACTATGCTAA
8349280 GAAAGAAATATTTATTTTT
1 GAAAGAAATATTTATTTTT
8349299 GAAAGAAATATTTATTTTT
1 GAAAGAAATATTTATTTTT
*
8349318 GAAAAAAATA
1 GAAAGAAATA
8349328 ATATTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (19 bp):
GAAAGAAATATTTATTTTT
Found at i:8349332 original size:18 final size:19
Alignment explanation
Indices: 8349280--8349333 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
8349270 ACTATGCTAA
* *
8349280 GAAAGAAATATTTATTTTT
1 GAAAAAAATATATATTTTT
* *
8349299 GAAAGAAATATTTATTTTT
1 GAAAAAAATATATATTTTT
8349318 GAAAAAAATA-ATATTT
1 GAAAAAAATATATATTT
8349334 ATGTTAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
18 5 0.15
19 28 0.85
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
GAAAAAAATATATATTTTT
Found at i:8349400 original size:24 final size:23
Alignment explanation
Indices: 8349373--8349433 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
8349363 TATTTTATAA
8349373 AATTATATTTATTATAAT-AG-T
1 AATTATATTTATTATAATGAGTT
8349394 -ATTA-ATTATTATTATAATGAGTT
1 AATTATA-T-TTATTATAATGAGTT
*
8349417 AATTA-ATTTTTTATAAT
1 AATTATATTTATTATAAT
8349434 TTCTCTATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
19 1 0.03
20 5 0.15
21 10 0.29
22 11 0.32
23 2 0.06
24 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (23 bp):
AATTATATTTATTATAATGAGTT
Found at i:8349407 original size:21 final size:23
Alignment explanation
Indices: 8349380--8349433 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
8349370 TAAAATTATA
8349380 TTTATTATAAT-AG-T-ATTAAT
1 TTTATTATAATGAGTTAATTAAT
8349400 TATTATTATAATGAGTTAATTAAT
1 T-TTATTATAATGAGTTAATTAAT
8349424 TTT-TTATAAT
1 TTTATTATAAT
8349434 TTCTCTATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.03
21 10 0.33
22 9 0.30
23 3 0.10
24 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (23 bp):
TTTATTATAATGAGTTAATTAAT
Found at i:8350403 original size:17 final size:18
Alignment explanation
Indices: 8350381--8350415 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8350371 ACCATGTGGA
*
8350381 GAAAAAATTA-ATTTTAT
1 GAAAAAAATATATTTTAT
8350398 GAAAAAAATATATTTTAT
1 GAAAAAAATATATTTTAT
8350416 CATTTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
GAAAAAAATATATTTTAT
Found at i:8350706 original size:45 final size:46
Alignment explanation
Indices: 8350640--8350733 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 46
8350630 TTAGTAACAC
8350640 AAAAACAAAAAGGGGACCCATCCTTCATGATTGATCAACAACAAAA
1 AAAAACAAAAAGGGGACCCATCCTTCATGATTGATCAACAACAAAA
* * *
8350686 AAAAAC-AAAGGGGGATCCATCCTTCATGATTGATCAACAACAGAA
1 AAAAACAAAAAGGGGACCCATCCTTCATGATTGATCAACAACAAAA
8350731 AAA
1 AAA
8350734 GAATATTAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
45 39 0.87
46 6 0.13
ACGTcount: A:0.49, C:0.20, G:0.15, T:0.16
Consensus pattern (46 bp):
AAAAACAAAAAGGGGACCCATCCTTCATGATTGATCAACAACAAAA
Found at i:8354715 original size:10 final size:10
Alignment explanation
Indices: 8354700--8354724 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8354690 TGCACAACAT
8354700 TTTAGTTGCA
1 TTTAGTTGCA
8354710 TTTAGTTGCA
1 TTTAGTTGCA
8354720 TTTAG
1 TTTAG
8354725 GTTATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.20, T:0.52
Consensus pattern (10 bp):
TTTAGTTGCA
Found at i:8355213 original size:19 final size:19
Alignment explanation
Indices: 8355189--8355233 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
8355179 GATCTTTACT
8355189 TGAAGTGTGAGCAAGCAAC
1 TGAAGTGTGAGCAAGCAAC
*
8355208 TGAAGTGTGAGCGAGCAAC
1 TGAAGTGTGAGCAAGCAAC
*
8355227 TGTAGTG
1 TGAAGTG
8355234 CTTCCCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.36, T:0.20
Consensus pattern (19 bp):
TGAAGTGTGAGCAAGCAAC
Found at i:8359727 original size:24 final size:24
Alignment explanation
Indices: 8359680--8359728 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
8359670 TTTTGTCAAA
*
8359680 GGTAAAGCTAGATAAGACAGAATT
1 GGTAAAGCTAGATAAGACACAATT
*
8359704 GGTACAAGCTAGATATGAC-CAATT
1 GGTA-AAGCTAGATAAGACACAATT
8359728 G
1 G
8359729 AATCTAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (24 bp):
GGTAAAGCTAGATAAGACACAATT
Found at i:8360085 original size:12 final size:12
Alignment explanation
Indices: 8360070--8360112 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
8360060 TGAAAGAATG
8360070 AATAAAATAAAA
1 AATAAAATAAAA
8360082 AATAAAAT-AAA
1 AATAAAATAAAA
8360093 AAT-AAATAAATA
1 AATAAAATAAA-A
8360105 AATAAAAT
1 AATAAAAT
8360113 GGAGGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 4 0.14
11 8 0.29
12 12 0.43
13 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AATAAAATAAAA
Found at i:8361771 original size:133 final size:132
Alignment explanation
Indices: 8361601--8361859 Score: 383
Period size: 133 Copynumber: 2.0 Consensus size: 132
8361591 CTTTTGAGTC
* * *
8361601 TGATCTCCCTAAAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGTTCTTCCTAAAGAGCAA
1 TGATCTCCCTAAAGAGTAGTAGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTCATAAAGAGCAA
* ** *
8361666 CGAAGCAAATCAAGTTCGATTCAATTTTTCCTGAAGAGCAGCGAAGTGAATCAAAATTTTCTAAA
66 CGAAGCAAATCAACTTCGATTCAACCTTTCCTGAAGAGCAGAGAAGTGAATCAAAATTTTCTAAA
8361731 TA
131 TA
* * *
8361733 TGATCTCCCCTAAAGAGTAGTAGAGGATATTCTTCTTCTTTCAGATTTGGTCTTCATGAAGAGCA
1 TGATCT-CCCTAAAGAGTAGTAGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTCATAAAGAGCA
** * *
8361798 GTGAAGCAAATCAACTTCGATTCAACCTTTCCTGAAGAGCAGAGAAGTGACTCAAATTTTTC
65 ACGAAGCAAATCAACTTCGATTCAACCTTTCCTGAAGAGCAGAGAAGTGAATCAAAATTTTC
8361860 AGATCTAATT
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
132 6 0.05
133 106 0.95
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (132 bp):
TGATCTCCCTAAAGAGTAGTAGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTCATAAAGAGCAA
CGAAGCAAATCAACTTCGATTCAACCTTTCCTGAAGAGCAGAGAAGTGAATCAAAATTTTCTAAA
TA
Found at i:8362210 original size:38 final size:39
Alignment explanation
Indices: 8362159--8362232 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 39
8362149 TTGATTGTTA
* *
8362159 AATATGTAGGTTATATGAGTAAG-TGTATATATATAAGT
1 AATATATAGGTTATATGAGTAAGATATATATATATAAGT
* *
8362197 AATATATATGTTATATGCGTAAGATATATATATATA
1 AATATATAGGTTATATGAGTAAGATATATATATATA
8362233 TATATATACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 20 0.65
39 11 0.35
ACGTcount: A:0.42, C:0.01, G:0.16, T:0.41
Consensus pattern (39 bp):
AATATATAGGTTATATGAGTAAGATATATATATATAAGT
Found at i:8364189 original size:24 final size:24
Alignment explanation
Indices: 8364142--8364218 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
8364132 TGTCATCGTG
* *
8364142 AAGTGATTGCCTTAAAAGTGTAAGA
1 AAGTGATTGTCTT-AAAGTATAAGA
8364167 AAGTGATTGTCTTAAAGTATAAGA
1 AAGTGATTGTCTTAAAGTATAAGA
8364191 AAGTGATTGTCTTAAAGTATAAGA
1 AAGTGATTGTCTTAAAGTATAAGA
8364215 AAGT
1 AAGT
8364219 TTTTTTCGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 38 0.76
25 12 0.24
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (24 bp):
AAGTGATTGTCTTAAAGTATAAGA
Found at i:8368105 original size:39 final size:39
Alignment explanation
Indices: 8368047--8368279 Score: 266
Period size: 39 Copynumber: 6.2 Consensus size: 39
8368037 AGATTCTAAA
* * *
8368047 AAAATAAATTCAATGATTTATTTCTTTTTACAAAATAGG
1 AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
*
8368086 AAAATAAATCCAATAATTTATTTCC---T--AAAATGGG
1 AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
* *
8368120 AAAATAAGTCCAATAAGTTATTTCCTTTTACAAAATA-G
1 AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
* * * * *
8368158 -AAATAAGTCCAATGATTTATTTTCTTTAACAAAATAGA
1 AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
* *
8368196 AAAATAAATCCAATGATTTATTTCCTTCTACAAAATAGG
1 AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
* *
8368235 AAAATAAATCTAATGAA-TTATTCCCTTTTACAAAATAGG
1 AAAATAAATCCAAT-AATTTATTTCCTTTTACAAAATAGG
8368274 AAAATA
1 AAAATA
8368280 TTCCTTTTAC
Statistics
Matches: 165, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
34 30 0.18
36 1 0.01
37 33 0.20
38 1 0.01
39 99 0.60
40 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (39 bp):
AAAATAAATCCAATAATTTATTTCCTTTTACAAAATAGG
Found at i:8368122 original size:34 final size:34
Alignment explanation
Indices: 8368078--8368145 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
8368068 TTCTTTTTAC
*
8368078 AAAATAGGAAAATAAATCCAATAATTTATTTCCT
1 AAAATAGGAAAATAAATCCAATAAGTTATTTCCT
* *
8368112 AAAATGGGAAAATAAGTCCAATAAGTTATTTCCT
1 AAAATAGGAAAATAAATCCAATAAGTTATTTCCT
8368146 TTTACAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (34 bp):
AAAATAGGAAAATAAATCCAATAAGTTATTTCCT
Found at i:8368190 original size:110 final size:113
Alignment explanation
Indices: 8368048--8368272 Score: 298
Period size: 110 Copynumber: 2.0 Consensus size: 113
8368038 GATTCTAAAA
* * *
8368048 AAATAAATTCAATGATTTATTTCTTTTTACAAAATAGGAAAATAAATCCAATAATTTATTT-C-C
1 AAATAAATCCAATGATTTATTTCTTTTAACAAAATAGAAAAATAAATCCAATAATTTATTTCCTC
* * *
8368111 T-AAAATGGGAAAATAAGTCCAAT-AAGTTATTTCCTTTTACAAAATAG
66 TAAAAATAGGAAAATAAATCCAATGAA-TTATTCCCTTTTACAAAATAG
* *
8368158 AAATAAGTCCAATGATTTATTT-TCTTTAACAAAATAGAAAAATAAATCCAATGATTTATTTCCT
1 AAATAAATCCAATGATTTATTTCT-TTTAACAAAATAGAAAAATAAATCCAATAATTTATTTCC-
*
8368222 TCTACAAAATAGGAAAATAAATCTAATGAATTATTCCCTTTTACAAAATAG
64 TCTA-AAAATAGGAAAATAAATCCAATGAATTATTCCCTTTTACAAAATAG
8368273 GAAAATATTC
Statistics
Matches: 99, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
109 1 0.01
110 54 0.55
111 1 0.01
113 2 0.02
115 39 0.39
116 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.36
Consensus pattern (113 bp):
AAATAAATCCAATGATTTATTTCTTTTAACAAAATAGAAAAATAAATCCAATAATTTATTTCCTC
TAAAAATAGGAAAATAAATCCAATGAATTATTCCCTTTTACAAAATAG
Found at i:8368365 original size:58 final size:58
Alignment explanation
Indices: 8368297--8368411 Score: 167
Period size: 58 Copynumber: 2.0 Consensus size: 58
8368287 TACATATCAC
* *
8368297 AATCATATAAGATTCCTAGAAAAATAAATTAAATGATTTATTTTCTGTTACAAAATAT
1 AATCAGATAAGATTCCTAGAAAAATAAATTAAATAATTTATTTTCTGTTACAAAATAT
* * * * *
8368355 AATCAGATAAGATTCTTAGGAAAATAAATTCATTAATTTATTTTCTTTTACAAAATA
1 AATCAGATAAGATTCCTAGAAAAATAAATTAAATAATTTATTTTCTGTTACAAAATA
8368412 GGAAAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (58 bp):
AATCAGATAAGATTCCTAGAAAAATAAATTAAATAATTTATTTTCTGTTACAAAATAT
Found at i:8368433 original size:39 final size:39
Alignment explanation
Indices: 8368371--8368451 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
8368361 ATAAGATTCT
* ** *
8368371 TAGGAAAATAAATTCATTAATTTATTTTCTTTTACAAA-A
1 TAGGAAAATAAATCCAACAATTTATTTCCTTTTA-AAATA
*
8368410 TAGGAAAATAAATCCAACGATTTATTTCCTTTTAAAATA
1 TAGGAAAATAAATCCAACAATTTATTTCCTTTTAAAATA
8368449 TAG
1 TAG
8368452 AATCATTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
38 3 0.08
39 33 0.92
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (39 bp):
TAGGAAAATAAATCCAACAATTTATTTCCTTTTAAAATA
Found at i:8368456 original size:97 final size:97
Alignment explanation
Indices: 8368317--8368494 Score: 216
Period size: 97 Copynumber: 1.8 Consensus size: 97
8368307 GATTCCTAGA
* * * * * *
8368317 AAAATAAATTAAATGATTTATTTTCTGTTACAAAATATAATCAGAT-AAGATTCTTAGGAAAATA
1 AAAATAAATCAAACGATTTATTTCCTGTTACAAAATAGAATCA-ATAAAGATTCATAAGAAAATA
*
8368381 AATTCATTAATTTATTTTCTTTTACAAAATAGG
65 AATTCAATAATTTATTTTCTTTTACAAAATAGG
* * * *
8368414 AAAATAAATCCAACGATTTATTTCCTTTTA-AAATATAGAATCATTAAATATTCATAAGAAAATA
1 AAAATAAATCAAACGATTTATTTCCTGTTACAAA-ATAGAATCAATAAAGATTCATAAGAAAATA
*
8368478 AATTTAATAATTTATTT
65 AATTCAATAATTTATTT
8368495 ATTTATTTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
96 4 0.06
97 63 0.94
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (97 bp):
AAAATAAATCAAACGATTTATTTCCTGTTACAAAATAGAATCAATAAAGATTCATAAGAAAATAA
ATTCAATAATTTATTTTCTTTTACAAAATAGG
Found at i:8368639 original size:56 final size:56
Alignment explanation
Indices: 8368503--8368826 Score: 192
Period size: 58 Copynumber: 5.7 Consensus size: 56
8368493 TTATTTATTT
* * *
8368503 ATTCAAGATTC-CTGAGAAAATAAATTTAAAAATTTATTTCATTTAACAAAATAGAATC
1 ATTCAAGATTCTC-AAGAAAATAAATTTAAAAATTTATTT-TTTTAA-AAGATAGAATC
* * * * *
8368561 ATTTAATATTTTCAAGAAAATAAATTTAATAATTTATTTTTTTAAAAGATAGAATT
1 ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTTTTTAAAAGATAGAATC
* * ** * * *
8368617 ATCCACGATTCTCAAGAAAATAAATTCGACAATTTATTTTTCTTACGAAGTTAGAATC
1 ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTTT-TTA-AAAGATAGAATC
* ** * * * *
8368675 ATTCAAGATTCTC----AAATAAATTCAACTATTTATTTTCATTACTAAGTTAGAGTC
1 ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTT-TTTA-AAAGATAGAATC
* * * * * ** *
8368729 ATTTAAGATTTTCATGGAAATAAATTCAACTATTT-TTTTTCCTTACAAAGTTAGAATC
1 ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTTT--TTA-AAAGATAGAATC
* * * * **
8368787 ATTTAAGATTCTTAAGGAAATAAATTCAACTATTTATTTT
1 ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTT
8368827 CCTTACGAAG
Statistics
Matches: 221, Mismatches: 34, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
54 46 0.21
56 42 0.19
57 12 0.05
58 116 0.52
59 5 0.02
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (56 bp):
ATTCAAGATTCTCAAGAAAATAAATTTAAAAATTTATTTTTTTAAAAGATAGAATC
Found at i:8368780 original size:58 final size:58
Alignment explanation
Indices: 8368554--8368845 Score: 285
Period size: 58 Copynumber: 5.1 Consensus size: 58
8368544 TTTAACAAAA
* * * * * * *
8368554 TAGAATCATTTAATATTTTCAAGAAAATAAATTTAA-TAATTTATTTT-TTTA-AAAGA
1 TAGAATCATTTAAGATTTTCATGGAAATAAATTCAACT-ATTTATTTTCCTTACGAAGT
* ** * * * * * * *
8368610 TAGAATTATCCACGATTCTCAAGAAAATAAATTCGACAATTTATTTTTCTTACGAAGT
1 TAGAATCATTTAAGATTTTCATGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
* * * *
8368668 TAGAATCATTCAAGA--TTC-T-CAAATAAATTCAACTATTTATTTTCATTACTAAGT
1 TAGAATCATTTAAGATTTTCATGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
* * *
8368722 TAGAGTCATTTAAGATTTTCATGGAAATAAATTCAACTATTTTTTTTCCTTACAAAGT
1 TAGAATCATTTAAGATTTTCATGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
*
8368780 TAGAATCATTTAAGATTCTT-AAGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
1 TAGAATCATTTAAGATT-TTCATGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
8368838 TAGAATCA
1 TAGAATCA
8368846 ACACAAGATT
Statistics
Matches: 195, Mismatches: 33, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
54 42 0.22
56 42 0.22
57 4 0.02
58 105 0.54
59 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (58 bp):
TAGAATCATTTAAGATTTTCATGGAAATAAATTCAACTATTTATTTTCCTTACGAAGT
Found at i:8368783 original size:112 final size:114
Alignment explanation
Indices: 8368634--8368841 Score: 305
Period size: 112 Copynumber: 1.8 Consensus size: 114
8368624 ATTCTCAAGA
* *
8368634 AAATAAATTCGACAATTTATTTTTCTTACGAAGTTAGAATCATTCAAGATTC-T-CAAATAAATT
1 AAATAAATTCAACAATTTATTTTTCTTACAAAGTTAGAATCATTCAAGATTCTTACAAATAAATT
*
8368697 CAACTATTTATTTTCATTACTAAGTTAGAGTCATTTAAGATTTTCATGG
66 CAACTATTTATTTTCATTACGAAGTTAGAGTCATTTAAGATTTTCATGG
* * *
8368746 AAATAAATTCAACTATTT-TTTTTCCTTACAAAGTTAGAATCATTTAAGATTCTTAAGGAAATAA
1 AAATAAATTCAACAATTTATTTTT-CTTACAAAGTTAGAATCATTCAAGATTCTT-A-CAAATAA
*
8368810 ATTCAACTATTTATTTTCCTTACGAAGTTAGA
63 ATTCAACTATTTATTTTCATTACGAAGTTAGA
8368842 ATCAACACAA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
111 5 0.06
112 42 0.50
113 1 0.01
116 36 0.43
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (114 bp):
AAATAAATTCAACAATTTATTTTTCTTACAAAGTTAGAATCATTCAAGATTCTTACAAATAAATT
CAACTATTTATTTTCATTACGAAGTTAGAGTCATTTAAGATTTTCATGG
Found at i:8374823 original size:17 final size:17
Alignment explanation
Indices: 8374801--8374838 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
8374791 CATGGACAAG
8374801 ATCTTTGATAGCAGCTA
1 ATCTTTGATAGCAGCTA
8374818 ATCTTTGATAGCAGCTA
1 ATCTTTGATAGCAGCTA
8374835 ATCT
1 ATCT
8374839 CTGAAGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (17 bp):
ATCTTTGATAGCAGCTA
Found at i:8377283 original size:61 final size:61
Alignment explanation
Indices: 8377204--8377342 Score: 269
Period size: 61 Copynumber: 2.3 Consensus size: 61
8377194 TGTGTGCATT
*
8377204 GGGTAAGACCTTATGGACCCAAGGTGCTCCCTTAGGTTGGAACCTACGCCCTTTAGGCCTA
1 GGGTAAGTCCTTATGGACCCAAGGTGCTCCCTTAGGTTGGAACCTACGCCCTTTAGGCCTA
8377265 GGGTAAGTCCTTATGGACCCAAGGTGCTCCCTTAGGTTGGAACCTACGCCCTTTAGGCCTA
1 GGGTAAGTCCTTATGGACCCAAGGTGCTCCCTTAGGTTGGAACCTACGCCCTTTAGGCCTA
8377326 GGGTAAGTCCTTATGGA
1 GGGTAAGTCCTTATGGA
8377343 TGCAGTTATG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 77 1.00
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (61 bp):
GGGTAAGTCCTTATGGACCCAAGGTGCTCCCTTAGGTTGGAACCTACGCCCTTTAGGCCTA
Found at i:8378796 original size:85 final size:83
Alignment explanation
Indices: 8378636--8378805 Score: 191
Period size: 85 Copynumber: 2.0 Consensus size: 83
8378626 GCAACTGTAC
* ***
8378636 ATCATAAATTTATGACGCGCATTTATGACGCTTATTGCGCGTCATTGAAGCCCCCGTCATAAATG
1 ATCATAAATTTATGACACGCATTTATGAC-CTTATTGCGCGTCATTGAAGCAAACGTCATAAA-G
* *
8378701 AAGACGACACACATTTGTGT
64 AAGACAACACACATTCGTGT
* *
8378721 ATCATAAATTTATGACACGCATTTATGA-CTTACATTGTGTGTCATTGAAGCAAACGTCATTAGA
1 ATCATAAATTTATGACACGCATTTATGACCTT--ATTGCGCGTCATTGAAGCAAACGTCA-TA-A
*
8378785 A-AAGATAACACACATTCGTGT
62 AGAAGACAACACACATTCGTGT
8378806 TTCGTGATTG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
83 3 0.04
85 65 0.90
86 2 0.03
87 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (83 bp):
ATCATAAATTTATGACACGCATTTATGACCTTATTGCGCGTCATTGAAGCAAACGTCATAAAGAA
GACAACACACATTCGTGT
Found at i:8378837 original size:2 final size:2
Alignment explanation
Indices: 8378830--8378862 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8378820 TCATAATTAT
8378830 TA TA TA TA TA TA TA TA TA -A TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8378863 TGTAGATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8378853 original size:9 final size:9
Alignment explanation
Indices: 8378830--8378862 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
8378820 TCATAATTAT
8378830 TATATATATA
1 TATATATA-A
8378840 TATATATAA
1 TATATATAA
8378849 TATATATAA
1 TATATATAA
8378858 TATAT
1 TATAT
8378863 TGTAGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TATATATAA
Found at i:8384405 original size:25 final size:27
Alignment explanation
Indices: 8384377--8384427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
8384367 TTATTTATAG
*
8384377 AAATG-CCCTAAAGTGT-AAATGACCA
1 AAATGCCCCGAAAGTGTAAAATGACCA
8384402 AAATGCCCCGAAAGTGTAAAATGACC
1 AAATGCCCCGAAAGTGTAAAATGACC
8384428 TAAAGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 10 0.43
27 8 0.35
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATGCCCCGAAAGTGTAAAATGACCA
Found at i:8389684 original size:19 final size:20
Alignment explanation
Indices: 8389657--8389715 Score: 77
Period size: 19 Copynumber: 3.0 Consensus size: 20
8389647 CCCGAACCAG
8389657 TCTGACCCGTTGACTTTGAC
1 TCTGACCCGTTGACTTTGAC
*
8389677 TC-GACCCGTTCACTTTGAC
1 TCTGACCCGTTGACTTTGAC
* *
8389696 -CTGATCCATTGACTTTGAC
1 TCTGACCCGTTGACTTTGAC
8389715 T
1 T
8389716 AGAGTTGGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 1 0.03
19 30 0.91
20 2 0.06
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.36
Consensus pattern (20 bp):
TCTGACCCGTTGACTTTGAC
Found at i:8389765 original size:17 final size:17
Alignment explanation
Indices: 8389743--8389776 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8389733 TTGACTTTGA
8389743 CCAAAAAGTCAAATTTT
1 CCAAAAAGTCAAATTTT
*
8389760 CCAAAAAGTCATATTTT
1 CCAAAAAGTCAAATTTT
8389777 ATGTTTTTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (17 bp):
CCAAAAAGTCAAATTTT
Found at i:8397721 original size:485 final size:482
Alignment explanation
Indices: 8396795--8397765 Score: 1854
Period size: 485 Copynumber: 2.0 Consensus size: 482
8396785 TGTTATTCGT
8396795 TATGGTTTTCTGTTTTTTTTTTCTTTTTCTGTTTATTGAAGGATTTATGCTGTTTGGTTGTGACT
1 TATGGTTTTCTGTTTTTTTTTTCTTTTTCTGTTTATTGAAGGATTTATGCTGTTTGGTTGTGACT
8396860 GCAAAAATCGCTGAGATGATAATAAACGAGAATAGATAATGGTTTGATCTATCTATGGAAATTCA
66 GCAAAAATCGCTGAGATGATAATAAACGAGAATAGATAATGGTTTGATCTATCTATGGAAATTCA
8396925 AATCAAGTCGATATCCCTCTATTTGTCTTTTTTTCTTTTATAATAGTATAATTTCTTTTGGGATG
131 AATCAAGTCGATATCCCTCTATTTGTCTTTTTTTCTTTTATAATAGTATAATTTCTTTTGGGATG
8396990 TAAATATGGGCCTGATGGAATAATTATTGATAATTCTATTTCTATGTAAGAGAGAACAAGTGGGG
196 TAAATATGGGCCTGATGGAATAATTATTGATAATTCTATTTCTATGTAAGAGAGAACAAGTGGGG
8397055 GGAATTCCTTGGTTTGATTCTTCTTTTTTTTAAGTAAAGGCGTTGTTGATGATGAGAGAAAATGG
261 GGAATTCCTTGGTTTGATTCTTCTTTTTTTTAAGTAAAGGCGTTGTTGATGATGAGAGAAAATGG
*
8397120 ATATCCATTTTTAGATTTTTATATGTTGTTATTTGATTGGTGATTGAATTTTTAAAGTTTGAAGC
326 ATATCCATTTTTAGATTTGTATATGTTGTTATTTGATTGGTGATTGAATTTTTAAAGTTTGAAGC
*
8397185 AATCATTTTCTTCCACCTTATTTGGTTGCTGTTGACTTGTTTAGTTTAAAGCTTTCTGTAAAAGT
391 AATCATTTTCTTCCACCTTATTTGGTTGCTGTTGACTTGCTTAGTTTAAAGCTTTCTGTAAAAGT
8397250 CTTTTGCTGAATCTACAAGTTGTACTA
456 CTTTTGCTGAATCTACAAGTTGTACTA
8397277 TATGGTTTTCTGTTTTTTTCTTTTTCTTTTTCTGTTTATTGAAGGATTTATGCTGTTTGGTTGTG
1 TATGGTTTTCTG--TTTTT-TTTTTCTTTTTCTGTTTATTGAAGGATTTATGCTGTTTGGTTGTG
*
8397342 GCTGCAAAAATCGCTGAGATGATAATAAACGAGAATAGATAATGGTTTGATCTATCTATGGAAAT
63 ACTGCAAAAATCGCTGAGATGATAATAAACGAGAATAGATAATGGTTTGATCTATCTATGGAAAT
8397407 TCAAATCAAGTCGATATCCCTCTATTTGTCTTTTTTTCTTTTTATAATAGTATAATTTCTTTTGG
128 TCAAATCAAGTCGATATCCCTCTATTTGTCTTTTTTTC-TTTTATAATAGTATAATTTCTTTTGG
8397472 GATGTAAATATGGGCCTGATGGAATAATTATTGATAATTCTATTTCTATGTAAGAGAGAACAAGT
192 GATGTAAATATGGGCCTGATGGAATAATTATTGATAATTCTATTTCTATGTAAGAGAGAACAAGT
*
8397537 GGGGGGAATTCCTTGGTTTGATTCTTC-TTTTTTTAAGTAAAGGTGTTGTTGATGATGAGAGAAA
257 GGGGGGAATTCCTTGGTTTGATTCTTCTTTTTTTTAAGTAAAGGCGTTGTTGATGATGAGAGAAA
*
8397601 ATGGATATCCATTTTTAGATTTGTATCTGTTGTTATTTGATTGGTGATTGAATTTTTAAAGTTTG
322 ATGGATATCCATTTTTAGATTTGTATATGTTGTTATTTGATTGGTGATTGAATTTTTAAAGTTTG
8397666 AAGCAATCATTTTCTTCCACCTTATTTGGTTGCTGTTGACTTGCTTAGTTTAAAGCTTTCTGTAA
387 AAGCAATCATTTTCTTCCACCTTATTTGGTTGCTGTTGACTTGCTTAGTTTAAAGCTTTCTGTAA
8397731 AAGTCTTTTGCTGAATCTACAAGTTGTACTA
452 AAGTCTTTTGCTGAATCTACAAGTTGTACTA
8397762 TATG
1 TATG
8397766 ATTGCCGATT
Statistics
Matches: 480, Mismatches: 5, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
482 12 0.03
484 5 0.01
485 345 0.72
486 118 0.25
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (482 bp):
TATGGTTTTCTGTTTTTTTTTTCTTTTTCTGTTTATTGAAGGATTTATGCTGTTTGGTTGTGACT
GCAAAAATCGCTGAGATGATAATAAACGAGAATAGATAATGGTTTGATCTATCTATGGAAATTCA
AATCAAGTCGATATCCCTCTATTTGTCTTTTTTTCTTTTATAATAGTATAATTTCTTTTGGGATG
TAAATATGGGCCTGATGGAATAATTATTGATAATTCTATTTCTATGTAAGAGAGAACAAGTGGGG
GGAATTCCTTGGTTTGATTCTTCTTTTTTTTAAGTAAAGGCGTTGTTGATGATGAGAGAAAATGG
ATATCCATTTTTAGATTTGTATATGTTGTTATTTGATTGGTGATTGAATTTTTAAAGTTTGAAGC
AATCATTTTCTTCCACCTTATTTGGTTGCTGTTGACTTGCTTAGTTTAAAGCTTTCTGTAAAAGT
CTTTTGCTGAATCTACAAGTTGTACTA
Found at i:8404668 original size:20 final size:20
Alignment explanation
Indices: 8404645--8404687 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8404635 TTACAATAAA
*
8404645 CTTAATA-CTTAACTCTTACT
1 CTTAATATC-TAACACTTACT
*
8404665 CTTAGTATCTAACACTTACT
1 CTTAATATCTAACACTTACT
8404685 CTT
1 CTT
8404688 GTTAGGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.44
Consensus pattern (20 bp):
CTTAATATCTAACACTTACT
Found at i:8404902 original size:17 final size:18
Alignment explanation
Indices: 8404857--8404902 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
8404847 ATATTACATG
8404857 TATCCCAAAACCCAGTATA
1 TATCCCAAAACCCAG-ATA
* *
8404876 GATGCCAAAACCCA-ATA
1 TATCCCAAAACCCAGATA
8404893 TATCCCAAAA
1 TATCCCAAAA
8404903 ACACTCTTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 11 0.48
19 12 0.52
ACGTcount: A:0.46, C:0.30, G:0.07, T:0.17
Consensus pattern (18 bp):
TATCCCAAAACCCAGATA
Found at i:8413827 original size:19 final size:19
Alignment explanation
Indices: 8413803--8413878 Score: 80
Period size: 21 Copynumber: 3.7 Consensus size: 19
8413793 ACCCCGTGGA
8413803 GGGTATCGATACCCTCAGG
1 GGGTATCGATACCCTCAGG
8413822 GGGTATCGATACCCACTCAAAGG
1 GGGTATCGATA-CC-CTC--AGG
* *
8413845 GGGTATCGGTACCCATTCAAG
1 GGGTATCGATACCC--TCAGG
8413866 GGGTATCGATACC
1 GGGTATCGATACC
8413879 TAGCATCGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 11 0.23
20 2 0.04
21 18 0.38
22 2 0.04
23 15 0.31
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (19 bp):
GGGTATCGATACCCTCAGG
Found at i:8413845 original size:23 final size:22
Alignment explanation
Indices: 8413803--8413878 Score: 97
Period size: 23 Copynumber: 3.6 Consensus size: 22
8413793 ACCCCGTGGA
8413803 GGGTATCGATA-CC-CTC-AGG
1 GGGTATCGATACCCACTCAAGG
8413822 GGGTATCGATACCCACTCAAAGG
1 GGGTATCGATACCCACTC-AAGG
* *
8413845 GGGTATCGGTACCCATTCAA-G
1 GGGTATCGATACCCACTCAAGG
8413866 GGGTATCGATACC
1 GGGTATCGATACC
8413879 TAGCATCGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.22
20 2 0.04
21 16 0.32
22 2 0.04
23 19 0.38
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (22 bp):
GGGTATCGATACCCACTCAAGG
Found at i:8425483 original size:22 final size:22
Alignment explanation
Indices: 8425457--8425514 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
8425447 TATCTTCAAA
* *
8425457 ATCTAAACCCTAAAATTTTAAG
1 ATCTAAACCCTAAAATATTAAC
* *
8425479 TTCTAAACCAT-AAATATTAAC
1 ATCTAAACCCTAAAATATTAAC
*
8425500 ATCTAAATCCTAAAA
1 ATCTAAACCCTAAAA
8425515 GTGGGGACTC
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.31
Consensus pattern (22 bp):
ATCTAAACCCTAAAATATTAAC
Found at i:8425498 original size:21 final size:22
Alignment explanation
Indices: 8425458--8425498 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8425448 ATCTTCAAAA
* *
8425458 TCTAAACCCTAAAATTTTAAGT
1 TCTAAACCATAAAATATTAAGT
8425480 TCTAAACCAT-AAATATTAA
1 TCTAAACCATAAAATATTAA
8425499 CATCTAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.34
Consensus pattern (22 bp):
TCTAAACCATAAAATATTAAGT
Found at i:8434540 original size:2 final size:2
Alignment explanation
Indices: 8434528--8434561 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8434518 TAAGATTTTA
*
8434528 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8434562 TAATTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:8434541 original size:10 final size:10
Alignment explanation
Indices: 8434524--8434582 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
8434514 GACATAAGAT
8434524 TTTA-ATATA
1 TTTATATATA
8434533 TTTATATATA
1 TTTATATATA
*
8434543 TATATATATA
1 TTTATATATA
*
8434553 TATATATATTAA
1 TTTATATA-T-A
8434565 TTTAT-T-TA
1 TTTATATATA
*
8434573 TTTGTATATA
1 TTTATATATA
8434583 ATATGAGGGG
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
8 5 0.12
9 6 0.14
10 24 0.57
11 2 0.05
12 5 0.12
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (10 bp):
TTTATATATA
Found at i:8445884 original size:14 final size:14
Alignment explanation
Indices: 8445865--8445891 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8445855 GATCAGAACT
8445865 TCAAGATTCCAGAG
1 TCAAGATTCCAGAG
8445879 TCAAGATTCCAGA
1 TCAAGATTCCAGA
8445892 CATGCAATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (14 bp):
TCAAGATTCCAGAG
Found at i:8446523 original size:99 final size:99
Alignment explanation
Indices: 8446341--8446524 Score: 271
Period size: 99 Copynumber: 1.9 Consensus size: 99
8446331 ATATCGTGCC
* * *
8446341 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAAGG
1 AATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCACAGCGAAGG
*
8446406 GACGGCTGATTGTCAACAAAAAACTTTCAGAGTT
66 GACGGCTGATGGTCAACAAAAAACTTTCAGAGTT
* * * *
8446440 AATTTCAACTTCACAATGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACGGTGAAGG
1 AATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCACAGCGAAGG
*
8446505 GGCGGCTGACTGGT-AACAAA
66 GACGGCTGA-TGGTCAACAAA
8446525 CAATTTCCCA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 72 0.96
100 3 0.04
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (99 bp):
AATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCACAGCGAAGG
GACGGCTGATGGTCAACAAAAAACTTTCAGAGTT
Found at i:8446768 original size:280 final size:273
Alignment explanation
Indices: 8446375--8446922 Score: 866
Period size: 280 Copynumber: 2.0 Consensus size: 273
8446365 ATTGGACTCG
* * * *
8446375 AGACAACACAAGTTCAACTTCACAGCGAAGGGACGGCTGATTGTCAACAAAAAACTTTCAGAGTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAAAAATTTCAGAGTC
* * *
8446440 AATTTCAACTTCACAATGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACGGTGAAGG
66 AATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
8446505 GGCGGCTGACTGGT-AACAAACAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACGACGGAGGA
131 GGCGGCTGACT-GTCAACAAACAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACGACGGAGGA
*
8446569 TATTGGACTCGGAGCAATACAACTTACTTGGATTTCAACTTCACGACGAAGGATATCCAATTACC
195 TATTGGACTCAGAGCAATACAACTTACTTGGATTTCAACTTCACGACGAAGGATATCCAATTACC
*
8446634 TGACTCAACACTTA
260 AGACTCAACACTTA
*
8446648 AGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAACTTCCCAATTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAA-AA------AATTT
* *
8446713 CAGAGTCAATTT-AACCTTCACAGCGAAGGATATTAGACTCGAGACAGCACAAGCTCAACTTCAC
59 CAGAGTCAATTTCAA-CTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCAC
*
8446777 AGCGAAGGGGCGGCTGACTGTCAACAAATAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACGA
123 AGCGAAGGGGCGGCTGACTGTCAACAAACAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACGA
*
8446842 TGGAGGATATTGGACTCAGAGCAATACAACTTACTTGGATTTCAACTTCACGACGAAGGATATCC
188 CGGAGGATATTGGACTCAGAGCAATACAACTTACTTGGATTTCAACTTCACGACGAAGGATATCC
*
8446907 AATTACCAGGCTCAAC
253 AATTACCAGACTCAAC
8446923 TTCACGACGG
Statistics
Matches: 251, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
273 48 0.19
274 2 0.01
279 4 0.02
280 197 0.78
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (273 bp):
AGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGATTGTCAACAAAAAAATTTCAGAGTC
AATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
GGCGGCTGACTGTCAACAAACAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACGACGGAGGAT
ATTGGACTCAGAGCAATACAACTTACTTGGATTTCAACTTCACGACGAAGGATATCCAATTACCA
GACTCAACACTTA
Found at i:8446858 original size:106 final size:106
Alignment explanation
Indices: 8446648--8446839 Score: 260
Period size: 106 Copynumber: 1.8 Consensus size: 106
8446638 TCAACACTTA
* ** *
8446648 AGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAACTTCCCAATTT
1 AGACAACACAAGCTCAACTTCACAACGAAGGGACGACTGACTGTCAACAAACAACTTCCCAATTC
*
8446713 CAGAGTCAATTTAACCTTCACAGCGAAGGATATTAGACTCG
66 CAGAGCCAATTTAACCTTCACAGCGAAGGATATTAGACTCG
* * * * * * *
8446754 AGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAATAATTTCCCAGTTC
1 AGACAACACAAGCTCAACTTCACAACGAAGGGACGACTGACTGTCAACAAACAACTTCCCAATTC
8446819 CAGAGCCAATTTCAA-CTTCAC
66 CAGAGCCAATTT-AACCTTCAC
8446840 GATGGAGGAT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
106 71 0.97
107 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.21
Consensus pattern (106 bp):
AGACAACACAAGCTCAACTTCACAACGAAGGGACGACTGACTGTCAACAAACAACTTCCCAATTC
CAGAGCCAATTTAACCTTCACAGCGAAGGATATTAGACTCG
Found at i:8448056 original size:2 final size:2
Alignment explanation
Indices: 8448049--8448078 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8448039 ATTTATAATT
8448049 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8448079 TCTGATTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8448107 original size:6 final size:6
Alignment explanation
Indices: 8448093--8448131 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
8448083 ATTTAGTTAT
* *
8448093 ATTTCC ATTTTC ATTTTC ATTTTC ATTTTC ATATTC ATT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATT
8448132 ATAATTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.62
Consensus pattern (6 bp):
ATTTTC
Found at i:8448138 original size:18 final size:18
Alignment explanation
Indices: 8448099--8448138 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8448089 TTATATTTCC
* * *
8448099 ATTTTCATTTTCATTTTC
1 ATTTTCATATTCATTATA
8448117 ATTTTCATATTCATTATA
1 ATTTTCATATTCATTATA
8448135 ATTT
1 ATTT
8448139 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTCATATTCATTATA
Found at i:8448155 original size:22 final size:22
Alignment explanation
Indices: 8448133--8448191 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
8448123 ATATTCATTA
*
8448133 TAATTTCTTTTATTTTTTTTTAT
1 TAATTT-TATTATTTTTTTTTAT
*
8448156 TACTTTTATTATTTTTTTATT-T
1 TAATTTTATTATTTTTTT-TTAT
*
8448178 TAATACTTATTATT
1 TAAT-TTTATTATT
8448192 ACTATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (22 bp):
TAATTTTATTATTTTTTTTTAT
Found at i:8448161 original size:19 final size:20
Alignment explanation
Indices: 8448139--8448176 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8448129 ATTATAATTT
8448139 CTTTTATT-TTTTTTTATTA
1 CTTTTATTATTTTTTTATTA
8448158 CTTTTATTATTTTTTTATT
1 CTTTTATTATTTTTTTATT
8448177 TTAATACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
CTTTTATTATTTTTTTATTA
Found at i:8448230 original size:2 final size:2
Alignment explanation
Indices: 8448223--8448254 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8448213 TATAAGTTAT
8448223 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8448255 CTCATATAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8448376 original size:12 final size:12
Alignment explanation
Indices: 8448361--8448445 Score: 54
Period size: 11 Copynumber: 7.2 Consensus size: 12
8448351 TTAACTTGTA
8448361 TTTTT-TTTATT
1 TTTTTCTTTATT
8448372 TTTTTCTTTATT
1 TTTTTCTTTATT
**
8448384 TTATGTGATTGTATT
1 TT-T-TTCTT-TATT
*
8448399 TTTTT-TTCATT
1 TTTTTCTTTATT
8448410 TTTTTC--TATT
1 TTTTTCTTTATT
* *
8448420 TTCTT-TGTATT
1 TTTTTCTTTATT
*
8448431 TTTTTCATTATT
1 TTTTTCTTTATT
8448443 TTT
1 TTT
8448446 ATTGTTGTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
10 7 0.12
11 21 0.37
12 17 0.30
13 2 0.04
14 4 0.07
15 6 0.11
ACGTcount: A:0.12, C:0.06, G:0.05, T:0.78
Consensus pattern (12 bp):
TTTTTCTTTATT
Found at i:8448412 original size:11 final size:10
Alignment explanation
Indices: 8448399--8448445 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
8448389 TGATTGTATT
8448399 TTTTTTTC-A
1 TTTTTTTCTA
8448408 TTTTTTTCTA
1 TTTTTTTCTA
*
8448418 TTTTCTTTGTA
1 TTTT-TTTCTA
8448429 TTTTTTTC-A
1 TTTTTTTCTA
8448438 TTATTTTT
1 TT-TTTTT
8448446 ATTGTTGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 11 0.33
10 13 0.39
11 9 0.27
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTTTTCTA
Found at i:8448419 original size:21 final size:20
Alignment explanation
Indices: 8448361--8448445 Score: 61
Period size: 21 Copynumber: 4.3 Consensus size: 20
8448351 TTAACTTGTA
8448361 TTTTTTTTATTTTTTTC---
1 TTTTTTTTATTTTTTTCTAT
* * ** *
8448378 TTTATTTTATGTGATTGTAT
1 TTTTTTTTATTTTTTTCTAT
8448398 TTTTTTTTCATTTTTTTCTAT
1 TTTTTTTT-ATTTTTTTCTAT
*
8448419 TTTCTTTGTATTTTTTTC-AT
1 TTT-TTTTTATTTTTTTCTAT
8448439 TATTTTT
1 T-TTTTT
8448446 ATTGTTGTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
17 12 0.24
20 13 0.25
21 22 0.43
22 4 0.08
ACGTcount: A:0.12, C:0.06, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTTTTTATTTTTTTCTAT
Found at i:8462896 original size:18 final size:18
Alignment explanation
Indices: 8462873--8462907 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8462863 TTGCATTGTT
* *
8462873 ATATCAATACTATGTGTA
1 ATATCAACACTAAGTGTA
8462891 ATATCAACACTAAGTGT
1 ATATCAACACTAAGTGT
8462908 GCAACTCACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (18 bp):
ATATCAACACTAAGTGTA
Found at i:8462973 original size:54 final size:54
Alignment explanation
Indices: 8462898--8463221 Score: 373
Period size: 54 Copynumber: 6.0 Consensus size: 54
8462888 GTAATATCAA
* *
8462898 CACTAAGTGTGCAACTCACAGAATTCATAATAAGTTTATGAACGACCATATCGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAACGACCGTATCGG
* * * ** * *
8462952 TAGTATGTGTGCAACTTACAGAATTCATAATAAGTTTATGAACGAACGCATCGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAACGACCGTATCGG
* * * * *
8463006 CACTAAGTGTGCAACCTACAAAATTCATAATAAGTTAATGAACGACTGTATTGG
1 CACTAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAACGACCGTATCGG
** * * * * *
8463060 CAAAAAGTGTACAACCCACAAAATTCATAATAAGTTTATAAACGACTGTATCGA
1 CACTAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAACGACCGTATCGG
* * *
8463114 CACTAAGTGTGTAACCCAC-GAAATTCATAATAAGTTTATGAATGACCGTATCAG
1 CACTAAGTGTGCAACCCACAG-AATTCATAATAAGTTTATGAACGACCGTATCGG
* * *
8463168 CACTAAGTGTGCAACTCAC-GAAATTCATAATAAGTTTATGAATGACTGTATCGG
1 CACTAAGTGTGCAACCCACAG-AATTCATAATAAGTTTATGAACGACCGTATCGG
8463222 AGCTACGTGA
Statistics
Matches: 230, Mismatches: 39, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 230 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (54 bp):
CACTAAGTGTGCAACCCACAGAATTCATAATAAGTTTATGAACGACCGTATCGG
Found at i:8463194 original size:162 final size:162
Alignment explanation
Indices: 8462902--8463218 Score: 422
Period size: 162 Copynumber: 2.0 Consensus size: 162
8462892 TATCAACACT
* * * * ** * *
8462902 AAGTGTGCAACTCACAGAATTCATAATAAGTTTATGAACGACCATATCGGTAGTATGTGTGCAAC
1 AAGTGTACAACCCACAAAATTCATAATAAGTTTATAAACGACCATATCGACACTAAGTGTGCAAC
** *
8462967 TTACAGAATTCATAATAAGTTTATGAACGAACGCATCGGCACTAAGTGTGCAACCTACAAAATTC
66 CCACAGAATTCATAATAAGTTTATGAACGAACGCATCAGCACTAAGTGTGCAACCTACAAAATTC
8463032 ATAATAAGTTAATGAACGACTGTATTGGCAAA
131 ATAATAAGTTAATGAACGACTGTATTGGCAAA
** *
8463064 AAGTGTACAACCCACAAAATTCATAATAAGTTTATAAACGACTGTATCGACACTAAGTGTGTAAC
1 AAGTGTACAACCCACAAAATTCATAATAAGTTTATAAACGACCATATCGACACTAAGTGTGCAAC
* * * *
8463129 CCAC-GAAATTCATAATAAGTTTATGAATGACCGTATCAGCACTAAGTGTGCAA-CTCACGAAAT
66 CCACAG-AATTCATAATAAGTTTATGAACGAACGCATCAGCACTAAGTGTGCAACCT-ACAAAAT
* *
8463192 TCATAATAAGTTTATGAATGACTGTAT
129 TCATAATAAGTTAATGAACGACTGTAT
8463219 CGGAGCTACG
Statistics
Matches: 133, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
161 3 0.02
162 130 0.98
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (162 bp):
AAGTGTACAACCCACAAAATTCATAATAAGTTTATAAACGACCATATCGACACTAAGTGTGCAAC
CCACAGAATTCATAATAAGTTTATGAACGAACGCATCAGCACTAAGTGTGCAACCTACAAAATTC
ATAATAAGTTAATGAACGACTGTATTGGCAAA
Found at i:8465658 original size:16 final size:16
Alignment explanation
Indices: 8465639--8465670 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8465629 AGAATGAAAC
8465639 ATGAAGAATTTAAGTT
1 ATGAAGAATTTAAGTT
8465655 ATGAAGAATTTAAGTT
1 ATGAAGAATTTAAGTT
8465671 GATTTGAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (16 bp):
ATGAAGAATTTAAGTT
Found at i:8466532 original size:18 final size:18
Alignment explanation
Indices: 8466508--8466563 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
8466498 GAGGGATTAT
8466508 AAGTGGTCCTTCGGGACA
1 AAGTGGTCCTTCGGGACA
*
8466526 TAGTGGTCCTTCGGGACA
1 AAGTGGTCCTTCGGGACA
* *
8466544 AAGTGGTCATACGGGACA
1 AAGTGGTCCTTCGGGACA
8466562 AA
1 AA
8466564 TTTTCAGTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (18 bp):
AAGTGGTCCTTCGGGACA
Found at i:8472626 original size:21 final size:23
Alignment explanation
Indices: 8472578--8472630 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
8472568 GTATGAACAA
*
8472578 TATCGATA-GCATATGGAAGGGC
1 TATCGATACCCATATGGAAGGGC
*
8472600 TATCGATACCCATGTGG-AGGG-
1 TATCGATACCCATATGGAAGGGC
8472621 TATCGATACC
1 TATCGATACC
8472631 ATGGAACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 10 0.36
22 12 0.43
23 6 0.21
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (23 bp):
TATCGATACCCATATGGAAGGGC
Found at i:8473321 original size:18 final size:18
Alignment explanation
Indices: 8473298--8473332 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8473288 AGGGATTATA
8473298 AGTGGTCATTCGGGACAT
1 AGTGGTCATTCGGGACAT
*
8473316 AGTGGTCCTTCGGGACA
1 AGTGGTCATTCGGGACA
8473333 AATTTTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:8477555 original size:11 final size:11
Alignment explanation
Indices: 8477535--8477566 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8477525 GTTTAGAGGG
*
8477535 AAATTTATTTA
1 AAATTCATTTA
8477546 AAATTCATTTA
1 AAATTCATTTA
8477557 AAATTCATTT
1 AAATTCATTT
8477567 TAATTGGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (11 bp):
AAATTCATTTA
Found at i:8478699 original size:54 final size:54
Alignment explanation
Indices: 8478634--8479016 Score: 409
Period size: 54 Copynumber: 7.1 Consensus size: 54
8478624 GTACTATTGG
* *
8478634 CACTAAATGTGCAACTCACGAAATTCATAATAAGTTTATGAACGATCGTATCGA
1 CACTAAGTGTGCAACTCACGAAATTCATAATAAGTTTATGAACGACCGTATCGA
* * *
8478688 CACTAAGTGTGCAACCCAC-AGAATTCATAATAAGTTCATGAACGACCATATCGA
1 CACTAAGTGTGCAACTCACGA-AATTCATAATAAGTTTATGAACGACCGTATCGA
* * * * * * *
8478742 AACTAAGTGTGTAACCCACGGAATTCATATTAAGTTTAAGAACGACTGTATC-A
1 CACTAAGTGTGCAACTCACGAAATTCATAATAAGTTTATGAACGACCGTATCGA
** *
8478795 GCACTAAGTGTGCAAC-C-CGCAGAATTCATAATAAGTTTATGAACGATAGTATCGG
1 -CACTAAGTGTGCAACTCACG-A-AATTCATAATAAGTTTATGAACGACCGTATCGA
* * * * * *
8478850 TACAAAGTGTG-ATACTCATGGAATTCATAATAAGTTTATGAACAACCGAATCGA
1 CACTAAGTGTGCA-ACTCACGAAATTCATAATAAGTTTATGAACGACCGTATCGA
* * * *
8478904 CACTAAGTGTGCAACTCAC-ATAATTGATAATAAGTTTATGAACGGCCGTATTGG
1 CACTAAGTGTGCAACTCACGA-AATTCATAATAAGTTTATGAACGACCGTATCGA
* * * *
8478958 CACTAAGTGTACAACTCACGGAATTCATAATAAGTTTATGAATGACTGTATCGA
1 CACTAAGTGTGCAACTCACGAAATTCATAATAAGTTTATGAACGACCGTATCGA
8479012 CACTA
1 CACTA
8479017 CGTATGCACC
Statistics
Matches: 269, Mismatches: 48, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.01
53 4 0.01
54 260 0.97
55 2 0.01
56 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (54 bp):
CACTAAGTGTGCAACTCACGAAATTCATAATAAGTTTATGAACGACCGTATCGA
Found at i:8478824 original size:108 final size:108
Alignment explanation
Indices: 8478635--8479034 Score: 475
Period size: 108 Copynumber: 3.7 Consensus size: 108
8478625 TACTATTGGC
* *
8478635 ACTAAATGTGCAACTCACGAAATTCATAATAAGTTTATGAACGA-TCGTATCGACACTAAGTGTG
1 ACTAAGTGTGCAACTCACGGAATTCATAATAAGTTTATGAACGACT-GTATCGACACTAAGTGTG
* *
8478699 CAACCCACAGAATTCATAATAAGTTCATGAACGACCATATCGAA
65 CAACCCACAGAATTCATAATAAGTTTATGAACGACCATATCGGA
* * * *
8478743 ACTAAGTGTGTAACCCACGGAATTCATATTAAGTTTAAGAACGACTGTATC-AGCACTAAGTGTG
1 ACTAAGTGTGCAACTCACGGAATTCATAATAAGTTTATGAACGACTGTATCGA-CACTAAGTGTG
* * *
8478807 CAACCCGCAGAATTCATAATAAGTTTATGAACGA-TAGTATCGGT
65 CAACCCACAGAATTCATAATAAGTTTATGAACGACCA-TATCGGA
* * * * *
8478851 ACAAAGTGTG-ATACTCATGGAATTCATAATAAGTTTATGAACAACCGAATCGACACTAAGTGTG
1 ACTAAGTGTGCA-ACTCACGGAATTCATAATAAGTTTATGAACGACTGTATCGACACTAAGTGTG
* * * * * * *
8478915 CAACTCACATAATTGATAATAAGTTTATGAACGGCCGTATTGGC
65 CAACCCACAGAATTCATAATAAGTTTATGAACGACCATATCGGA
* * * *
8478959 ACTAAGTGTACAACTCACGGAATTCATAATAAGTTTATGAATGACTGTATCGACACTACGTATGC
1 ACTAAGTGTGCAACTCACGGAATTCATAATAAGTTTATGAACGACTGTATCGACACTAAGTGTGC
* *
8479024 ACCCCAAAGAA
66 AACCCACAGAA
8479035 CTTATGATGA
Statistics
Matches: 244, Mismatches: 41, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
107 3 0.01
108 238 0.98
109 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (108 bp):
ACTAAGTGTGCAACTCACGGAATTCATAATAAGTTTATGAACGACTGTATCGACACTAAGTGTGC
AACCCACAGAATTCATAATAAGTTTATGAACGACCATATCGGA
Found at i:8480014 original size:13 final size:14
Alignment explanation
Indices: 8479991--8480023 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8479981 ACATATTTTC
8479991 TGATCTATAAATTT
1 TGATCTATAAATTT
*
8480005 T-ATCTCTAAATTT
1 TGATCTATAAATTT
8480018 TGATCT
1 TGATCT
8480024 TTGGTTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.30, C:0.12, G:0.06, T:0.52
Consensus pattern (14 bp):
TGATCTATAAATTT
Found at i:8484104 original size:17 final size:17
Alignment explanation
Indices: 8484082--8484115 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8484072 ACTTTGACCC
8484082 AAAAGTCAAATTTTATG
1 AAAAGTCAAATTTTATG
*
8484099 AAAAGTCATATTTTATG
1 AAAAGTCAAATTTTATG
8484116 TTGTTCAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAAGTCAAATTTTATG
Found at i:8486103 original size:3 final size:3
Alignment explanation
Indices: 8486095--8486141 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
8486085 TTTGTCCAGG
*
8486095 TTA TTA TTA ATA TGTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8486140 TT
1 TT
8486142 TCTTTTTACA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8493047 original size:7 final size:7
Alignment explanation
Indices: 8493037--8493164 Score: 84
Period size: 7 Copynumber: 17.7 Consensus size: 7
8493027 GAGAGAAGGA
8493037 AAAAAAG
1 AAAAAAG
8493044 AAAAAAG
1 AAAAAAG
*
8493051 ATTAAAAG
1 A-AAAAAG
8493059 AAAAAAG
1 AAAAAAG
*
8493066 ATTAAAAG
1 A-AAAAAG
8493074 AAAAAAG
1 AAAAAAG
*
8493081 ATTAAAAGG
1 A--AAAAAG
8493090 AAAAAAAG
1 -AAAAAAG
8493098 AAAATATAG
1 AAAA-A-AG
8493107 AAAAAA-
1 AAAAAAG
*
8493113 AAAGAAG
1 AAAAAAG
*
8493120 -GAAAAG
1 AAAAAAG
*
8493126 AGAAAAG
1 AAAAAAG
8493133 -AAAAA-
1 AAAAAAG
*
8493138 AAAAAGG
1 AAAAAAG
8493145 AAAAAGAG
1 AAAAA-AG
*
8493153 GAAAAAG
1 AAAAAAG
8493160 AAAAA
1 AAAAA
8493165 GAGAGAGAAA
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
6 17 0.18
7 42 0.44
8 24 0.25
9 11 0.12
10 1 0.01
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (7 bp):
AAAAAAG
Found at i:8493059 original size:15 final size:15
Alignment explanation
Indices: 8493039--8493095 Score: 105
Period size: 15 Copynumber: 3.7 Consensus size: 15
8493029 GAGAAGGAAA
8493039 AAAAGAAAAAAGATT
1 AAAAGAAAAAAGATT
8493054 AAAAGAAAAAAGATT
1 AAAAGAAAAAAGATT
8493069 AAAAGAAAAAAGATT
1 AAAAGAAAAAAGATT
8493084 AAAAGGAAAAAA
1 AAAA-GAAAAAA
8493096 AGAAAATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
15 34 0.83
16 7 0.17
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (15 bp):
AAAAGAAAAAAGATT
Found at i:8493131 original size:19 final size:17
Alignment explanation
Indices: 8493035--8493164 Score: 63
Period size: 19 Copynumber: 7.3 Consensus size: 17
8493025 GAGAGAGAAG
8493035 GAAAAAAAGAAAAAAGA
1 GAAAAAAAGAAAAAAGA
* *
8493052 TTAAAAGAAA-AAAGATTAAAA
1 -GAAAA-AAAGAAA-A--AAGA
*
8493073 G-AAAAAAGATTAAAAG-
1 GAAAAAAAGA-AAAAAGA
8493089 GAAAAAAAGAAAATATAGA
1 GAAAAAAAGAAAA-A-AGA
*
8493108 AAAAAAAAGAAGGAAAAGA
1 GAAAAAAAGAA--AAAAGA
*
8493127 GAAAAGAAAAAAAAAAG-
1 GAAAA-AAAGAAAAAAGA
* *
8493144 GAAAAAGAGGAAAAAGA
1 GAAAAAAAGAAAAAAGA
8493161 -AAAA
1 GAAAA
8493165 GAGAGAGAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 30
0.67 0.09 0.23
Matches are distributed among these distances:
16 15 0.17
17 16 0.19
18 17 0.20
19 26 0.30
20 7 0.08
21 5 0.06
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
GAAAAAAAGAAAAAAGA
Found at i:8493134 original size:26 final size:28
Alignment explanation
Indices: 8493038--8493164 Score: 93
Period size: 30 Copynumber: 4.4 Consensus size: 28
8493028 AGAGAAGGAA
* *
8493038 AAAAAGAAAAAAGATTAAAAGAAAAAAGA-T
1 AAAAAGAAAAAA-A--AAAAGGAAAAAGAGG
* * *
8493068 TAAAAGAAAAAAGATTAAAAGGAAAAAAAGA
1 AAAAAGAAAAAA-A--AAAAGGAAAAAGAGG
8493099 AAATATAGAAAAAAAAAGAAGG-AAAAGA-G
1 AAA-A-AGAAAAAAAAA-AAGGAAAAAGAGG
8493128 -AAAAG-AAAAAAAAAAGGAAAAAGAGG
1 AAAAAGAAAAAAAAAAAGGAAAAAGAGG
8493154 AAAAAGAAAAA
1 AAAAAGAAAAA
8493165 GAGAGAGAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
24 4 0.05
25 14 0.17
26 3 0.04
27 6 0.07
28 6 0.07
30 33 0.40
31 6 0.07
32 2 0.02
33 8 0.10
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.06
Consensus pattern (28 bp):
AAAAAGAAAAAAAAAAAGGAAAAAGAGG
Found at i:8493137 original size:27 final size:27
Alignment explanation
Indices: 8493084--8493164 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 27
8493074 AAAAAAGATT
* *
8493084 AAAAGGAAAAAAAGAAAATATAGAAAAAAA
1 AAAAGGAAAAAGAGGAAA-A-AG-AAAAAA
8493114 AAGAAGG-AAAAGA-G-AAAAGAAAAAA
1 AA-AAGGAAAAAGAGGAAAAAGAAAAAA
8493139 AAAAGGAAAAAGAGGAAAAAGAAAAA
1 AAAAGGAAAAAGAGGAAAAAGAAAAA
8493165 GAGAGAGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
24 4 0.09
25 14 0.31
26 3 0.07
27 11 0.24
28 2 0.04
30 7 0.16
31 4 0.09
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (27 bp):
AAAAGGAAAAAGAGGAAAAAGAAAAAA
Found at i:8493175 original size:26 final size:25
Alignment explanation
Indices: 8493107--8493175 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
8493097 GAAAATATAG
8493107 AAAAAAAAAGA-AG-GAAAAGAGAA
1 AAAAAAAAAGAGAGAGAAAAGAGAA
*
8493130 AAGAAAAAAA-AAAG-GAAAAAGAGGAA
1 AA-AAAAAAAGAGAGAG-AAAAGA-GAA
*
8493156 AAAGAAAAAGAGAGAGAAAA
1 AAAAAAAAAGAGAGAGAAAA
8493176 TAAATCAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
23 3 0.08
24 10 0.26
25 12 0.32
26 12 0.32
27 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAGAGAGAGAAAAGAGAA
Found at i:8495483 original size:41 final size:41
Alignment explanation
Indices: 8495376--8495483 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
8495366 TTCAAAATTA
* **
8495376 ATAAGTCCTTCGGGCCATCAGTAAGTATTTCGAGCATGCTG
1 ATAAGTCCTTCGGGCCATCAGTAAGTATTTCGAGCAAGAAG
* * * *
8495417 ATTAAATCCTTCGGGTCATCTGTAAGTATTTTGAGCAAGAAG
1 A-TAAGTCCTTCGGGCCATCAGTAAGTATTTCGAGCAAGAAG
* *
8495459 ATAAGTCCTTCGTGCCATCCGTAAG
1 ATAAGTCCTTCGGGCCATCAGTAAG
8495484 AACTTTTGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 21 0.38
42 34 0.62
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (41 bp):
ATAAGTCCTTCGGGCCATCAGTAAGTATTTCGAGCAAGAAG
Done.