Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 73
Found at i:9179786 original size:15 final size:15
Alignment explanation
Indices: 9179766--9179803 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
9179756 GAAACTGGAT
9179766 GGTCGCCGCCTTGCA
1 GGTCGCCGCCTTGCA
9179781 GGTCGCCGCCTTGCA
1 GGTCGCCGCCTTGCA
9179796 GGTCGCCG
1 GGTCGCCG
9179804 TTGATCGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.39, G:0.37, T:0.18
Consensus pattern (15 bp):
GGTCGCCGCCTTGCA
Found at i:9181336 original size:85 final size:85
Alignment explanation
Indices: 9181247--9182611 Score: 1689
Period size: 85 Copynumber: 16.0 Consensus size: 85
9181237 TGCTAATCTA
** * * * *
9181247 TAAATTTGACATGCCCTTGAGCTGAATGTAATCGAACTCAAAGGTATTTGTTGACAAATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
9181312 TCTCGCCTTGAGTTATGCTG
66 TCTCGCCTTGAGTTATGCTG
* * * * * * *
9181332 TAAATTTAATATGCGTTTGAGCTGAATGTAATTGAACTCGATGGTCTTTGCTGACAGATAACCTT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
* *
9181397 TCTCACCTTGAGTTATGATG
66 TCTCGCCTTGAGTTATGCTG
* * * * * * * *
9181417 TAAATTGGATATTCATTTGAGCTGAATGTAATCAAACTTGAAGGTCTTTTGTTAACAGATAGCCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACCC
* *
9181482 TTCTCGCCTTGAGCTATGTTG
65 TTCTCGCCTTGAGTTATGCTG
* * *
9181503 TAAATTTGATGTGCCTTTGAGTTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
*
9181568 TCTCGCCTTGAGTTATGTTG
66 TCTCGCCTTGAGTTATGCTG
* * * *
9181588 TAAATTTGATGTGCCTTTGAGTTGAGTGGAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
9181653 TCTCGCCTTGAGTTATGCTG
66 TCTCGCCTTGAGTTATGCTG
* * * * * * *
9181673 TAAATATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAATGTCTTGGTTGACAGATAGCCCA
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
*
9181738 TCTCGCCTTGAGCTATGCTG
66 TCTCGCCTTGAGTTATGCTG
* *
9181758 TAAATTTAATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTC-TTGATTGACAGATAACCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTG-TTGACAGATAACCC
* *
9181822 TTCTCACCTTGAGTTATGCTA
65 TTCTCGCCTTGAGTTATGCTG
* * * * *
9181843 TAAATTTGATGTGCCTTTGAGCTGAGTGGAATCGAACTTCGAAGGTATTGGTTGACAGATAGCCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAAC-TCGAAGGTCTTTGTTGACAGATAACCC
* * *
9181908 TTTTCACCTTGAGCTATGCTG
65 TTCTCGCCTTGAGTTATGCTG
* * * * *
9181929 TAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGACATATAACTCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
9181994 TCTCGCCTTGAGTTATGCTG
66 TCTCGCCTTGAGTTATGCTG
* * * * * **
9182014 TAAATTTGATATGCCTTTGAGCTGAGTGTAATTGAACTCAAAGGTCTTTTGTTGATAGATAGTCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACCC
* ** *
9182079 TTATCGCCTTGAGCCATGCTA
65 TTCTCGCCTTGAGTTATGCTG
* * * *
9182100 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCAAACTTGAAGGTCTTGGTTGACAAATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
* * *
9182165 TTTCACCTTGAGTTATGCTA
66 TCTCGCCTTGAGTTATGCTG
* * * * *
9182185 TAAATTTGATATGCCTTTGAGCT-AAGTGTAATCAAACTTGAAGGTCTTTTGTTGATAGATAGCC
1 TAAATTTGATGTGCCTTTGAGCTGAA-TGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACC
9182249 CTTCTCGCCTTGAGTTATGCTG
64 CTTCTCGCCTTGAGTTATGCTG
* *
9182271 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT-TTCTGCTGGCAGATAACCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTT-TGTTGACAGATAACCC
* *
9182335 TTCTCGTCTTGAGTTATGTTG
65 TTCTCGCCTTGAGTTATGCTG
* * * *
9182356 TAAATTGGATATGCCTTTGAGCTGAATGTAATTGAACTCGAAGGTCTTTTGTTG-CAGATAGCCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACCC
*
9182420 TTCTCGCCTTGAGCTATGCTG
65 TTCTCGCCTTGAGTTATGCTG
* * * * *
9182441 TAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTATTAGTTGACAGATAGCCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
9182506 TCT-GTCCTTGAGTTATGCTG
66 TCTCG-CCTTGAGTTATGCTG
* * * * *
9182526 CAAATTTGATATGCCTTTGAGCTGAATGTAATCAAACTTGAAGGT-TTTGGTTGATAGATAACCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTT-GTTGACAGATAACCC
*
9182590 TTCTCGCCTTGAGCTATGCTG
65 TTCTCGCCTTGAGTTATGCTG
9182611 T
1 T
9182612 CAATAATTCC
Statistics
Matches: 1113, Mismatches: 152, Indels: 30
0.86 0.12 0.02
Matches are distributed among these distances:
84 15 0.01
85 803 0.72
86 289 0.26
87 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (85 bp):
TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCT
TCTCGCCTTGAGTTATGCTG
Found at i:9181494 original size:171 final size:170
Alignment explanation
Indices: 9181247--9182611 Score: 1725
Period size: 171 Copynumber: 8.0 Consensus size: 170
9181237 TGCTAATCTA
** * * *
9181247 TAAATTTGACATGCCCTTGAGCTGAATGTAATCGAACTCAAAGGTATTTGTTGACAAATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
* * * *
9181312 TCTCGCCTTGAGTTATGCTGTAAATTTAATATGCGTTTGAGCTGAATGTAATTGAACTCGATGGT
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
* * * * *
9181377 CTTTGCTGACAGATAACCTTTCTCACCTTGAGTTATGATG
131 CTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* * * * * ** * *
9181417 TAAATTGGATATTCATTTGAGCTGAATGTAATCAAACTTGAAGGTCTTTTGTTAACAGATAGCCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTC-TTTGTTGACAGATAACCC
* * * * *
9181482 TTCTCGCCTTGAGCTATGTTGTAAATTTGATGTGCCTTTGAGTTGAATGTAATCGAACTCAAAGG
65 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
* * *
9181547 TCTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATGTTG
130 TCTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* * * * *
9181588 TAAATTTGATGTGCCTTTGAGTTGAGTGGAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
* * * * *
9181653 TCTCGCCTTGAGTTATGCTGTAAATATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAATGT
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
* * *
9181718 CTTGGTTGACAGATAGCCCATCTCGCCTTGAGCTATGCTG
131 CTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
*
9181758 TAAATTTAATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTC-TTGATTGACAGATAACCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTG-TTGACAGATAACCC
* * * * *
9181822 TTCTCACCTTGAGTTATGCTATAAATTTGATGTGCCTTTGAGCTGAGTGGAATCGAACTTCGAAG
65 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAAC-TCGAAG
* * * * *
9181887 GTATTGGTTGACAGATAGCCCTTTTCACCTTGAGCTATGCTG
129 GTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* * * *
9181929 TAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGACATATAACTCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
* * *
9181994 TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATTGAACTCAAAGGT
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
* ** * * *
9182059 CTTTTGTTGATAGATAGTCCTTATCGCCTTGAGCCATGCTA
131 C-TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* ** * *
9182100 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCAAACTTGAAGGTCTTGGTTGACAAATAACCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
* * * * *
9182165 TTTCACCTTGAGTTATGCTATAAATTTGATATGCCTTTGAGCT-AAGTGTAATCAAACTTGAAGG
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAA-TGTAATCGAACTCGAAGG
* * *
9182229 TCTTTTGTTGATAGATAGCCCTTCTCGCCTTGAGTTATGCTG
130 TC-TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* * *
9182271 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT-TTCTGCTGGCAGATAACCC
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTT-TGTTGACAGATAACCC
* * * *
9182335 TTCTCGTCTTGAGTTATGTTGTAAATTGGATATGCCTTTGAGCTGAATGTAATTGAACTCGAAGG
65 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
*
9182400 TCTTTTGTTG-CAGATAGCCCTTCTCGCCTTGAGCTATGCTG
130 TC-TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
* * * *
9182441 TAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTATTAGTTGACAGATAGCCCT
1 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
* * *
9182506 TCT-GTCCTTGAGTTATGCTGCAAATTTGATATGCCTTTGAGCTGAATGTAATCAAACTTGAAGG
66 TCTCG-CCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
*
9182570 T-TTTGGTTGATAGATAACCCTTCTCGCCTTGAGCTATGCTG
130 TCTTT-GTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
9182611 T
1 T
9182612 CAATAATTCC
Statistics
Matches: 1049, Mismatches: 134, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
168 3 0.00
169 7 0.01
170 438 0.42
171 597 0.57
172 4 0.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (170 bp):
TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTTGTTGACAGATAACCCT
TCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
CTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
Found at i:9181566 original size:256 final size:255
Alignment explanation
Indices: 9181247--9182611 Score: 1759
Period size: 256 Copynumber: 5.3 Consensus size: 255
9181237 TGCTAATCTA
* * * * *
9181247 TAAATTTGACATGCCCTTGAGCTGAATGTAATCGAACTCAAAGGTATTTGTTGACAAATAACCCT
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
* * * * *
9181312 TCTCGCCTTGAGTTATGCTGTAAATTTAATATGCGTTTGAGCTGAATGTAATTGAACTCGATGGT
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
* * * * * * *
9181377 CTTTGCTGACAGATAACCTTTCTCACCTTGAGTTATGATGTAAATTGGATATTCATTTGAGCTGA
131 CTTGGTTGACAGATAACCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGA
* * ** * * * *
9181442 ATGTAATCAAACTTGAAGGTCTTTTGTTAACAGATAGCCCTTCTCGCCTTGAGCTATGTTG
196 GTGTAATCGAACTCAAAGGTC-TTGGTTGACAGATAGCCCTTCTCGCCTTGAGTTATGCTG
* *
9181503 TAAATTTGATGTGCCTTTGAGTTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
* * * *
9181568 TCTCGCCTTGAGTTATGTTGTAAATTTGATGTGCCTTTGAGTTGAGTGGAATCGAACTCGAAGGT
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
* * *
9181633 CTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATATGATGTGCCTTTGAGCTGA
131 CTTGGTTGACAGATAACCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGA
* * *
9181698 GTGTAATCGAACTCAAATGTCTTGGTTGACAGATAGCCCATCTCGCCTTGAGCTATGCTG
196 GTGTAATCGAACTCAAAGGTCTTGGTTGACAGATAGCCCTTCTCGCCTTGAGTTATGCTG
* * *
9181758 TAAATTTAATGTGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGATTGACAGATAACCCT
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
* * * *
9181823 TCTCACCTTGAGTTATGCTATAAATTTGATGTGCCTTTGAGCTGAGTGGAATCGAACTTCGAAGG
66 TCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAAC-TCGAAGG
* * *
9181888 TATTGGTTGACAGATAGCCCTTT-TCACCTTGAGCTATGCTGTAAATTTGATGTGCCTTTGAGCT
130 TCTTGGTTGACAGATA-ACCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCT
* * *
9181952 GAGTGTAATCGAACTCAAAGGTCTTGGTTGACATATAACTCTTCTCGCCTTGAGTTATGCTG
194 GAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGATAGCCCTTCTCGCCTTGAGTTATGCTG
* * * * **
9182014 TAAATTTGATATGCCTTTGAGCTGAGTGTAATTGAACTCAAAGGTCTTTTGTTGATAGATAGTCC
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTC-TTGGTTGACAGATAACCC
* ** * * *
9182079 TTATCGCCTTGAGCCATGCTATAAATTTGATGTGCCTTTGAGCTGAATGTAATCAAACTTGAAGG
65 TTCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
* * *
9182144 TCTTGGTTGACAAATAACCCTTT-TCACCTTGAGTTATGCTATAAATTTGATATGCCTTTGAGCT
130 TCTTGGTTGACAGATAA-CCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCT
* * ** * *
9182208 AAGTGTAATCAAACTTGAAGGTCTTTTGTTGATAGATAGCCCTTCTCGCCTTGAGTTATGCTG
194 GAGTGTAATCGAACTCAAAGGTC-TTGGTTGACAGATAGCCCTTCTCGCCTTGAGTTATGCTG
* * * * *
9182271 TAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT-TTCTGCTGGCAGATAACCC
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTT-GGTTGACAGATAACCC
* * * * *
9182335 TTCTCGTCTTGAGTTATGTTGTAAATTGGATATGCCTTTGAGCTGAATGTAATTGAACTCGAAGG
65 TTCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
* * * * *
9182400 TCTTTTGTTG-CAGATAGCCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATGTGCCTTTGAGCT
130 TC-TTGGTTGACAGATAACCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCT
* *
9182464 GAGTGTAATCGAACTCAAAGGTATTAGTTGACAGATAGCCCTTCT-GTCCTTGAGTTATGCTG
194 GAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGATAGCCCTTCTCG-CCTTGAGTTATGCTG
* * ** * *
9182526 CAAATTTGATATGCCTTTGAGCTGAATGTAATCAAACTTGAAGGTTTTGGTTGATAGATAACCCT
1 TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
*
9182591 TCTCGCCTTGAGCTATGCTGT
66 TCTCGCCTTGAGTTATGCTGT
9182612 CAATAATTCC
Statistics
Matches: 967, Mismatches: 132, Indels: 21
0.86 0.12 0.02
Matches are distributed among these distances:
254 1 0.00
255 263 0.27
256 554 0.57
257 149 0.15
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (255 bp):
TAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCAAAGGTCTTGGTTGACAGATAACCCT
TCTCGCCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT
CTTGGTTGACAGATAACCTTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGA
GTGTAATCGAACTCAAAGGTCTTGGTTGACAGATAGCCCTTCTCGCCTTGAGTTATGCTG
Found at i:9187399 original size:48 final size:49
Alignment explanation
Indices: 9187311--9187410 Score: 184
Period size: 48 Copynumber: 2.0 Consensus size: 49
9187301 AAACCATCGA
9187311 AAGAAATTGTCAGTACAACTATTTATTTGAAAAAGTAATCAAAAGTAAGT
1 AAGAAATTGTCAGTACAAC-ATTTATTTGAAAAAGTAATCAAAAGTAAGT
9187361 AAGAAATTGTCAGTACAAC-TTTATTTGAAAAAGTAATCAAAAGTAAGT
1 AAGAAATTGTCAGTACAACATTTATTTGAAAAAGTAATCAAAAGTAAGT
9187409 AA
1 AA
9187411 TAAGGATCGA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 31 0.62
50 19 0.38
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (49 bp):
AAGAAATTGTCAGTACAACATTTATTTGAAAAAGTAATCAAAAGTAAGT
Found at i:9188085 original size:18 final size:17
Alignment explanation
Indices: 9188046--9188106 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
9188036 AGGAATAAAA
*
9188046 TAAATTAAAAAAACAAC
1 TAAAATAAAAAAACAAC
* *
9188063 GAAAATAAAAAAATAACC
1 TAAAATAAAAAAACAA-C
*
9188081 TAAAA-AAATAAAACAAAA
1 TAAAATAAA-AAAAC-AAC
9188099 TAAAATAA
1 TAAAATAA
9188107 TGAAAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 16 0.47
18 14 0.41
19 4 0.12
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (17 bp):
TAAAATAAAAAAACAAC
Found at i:9188117 original size:9 final size:9
Alignment explanation
Indices: 9188082--9188123 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
9188072 AAAATAACCT
*
9188082 AAAAAAATA
1 AAAAAAATG
9188091 AAACAAAAT-
1 AAA-AAAATG
*
9188100 AAAATAATG
1 AAAAAAATG
9188109 AAAAAAATG
1 AAAAAAATG
9188118 AAAAAA
1 AAAAAA
9188124 TACTAAAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 4 0.14
9 20 0.69
10 5 0.17
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (9 bp):
AAAAAAATG
Found at i:9188280 original size:16 final size:17
Alignment explanation
Indices: 9188253--9188288 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
9188243 GAAAGCAAAT
*
9188253 AATAATAATAAAGATAA
1 AATAATAATAAAGAAAA
9188270 AATAA-AATAAAGAAAA
1 AATAATAATAAAGAAAA
9188286 AAT
1 AAT
9188289 TTAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AATAATAATAAAGAAAA
Found at i:9188376 original size:3 final size:3
Alignment explanation
Indices: 9188368--9188406 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
9188358 TATATATGTA
9188368 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9188407 TATTATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9188489 original size:18 final size:19
Alignment explanation
Indices: 9188466--9188516 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
9188456 AATTAAAAAG
*
9188466 AAAAAAGAAAAATAGT-AT
1 AAAAAAGAAAAATAATAAT
*
9188484 AAAAAAGAATAATAATAAT
1 AAAAAAGAAAAATAATAAT
9188503 AAATAATAGAAAAA
1 AAA-AA-AGAAAAA
9188517 AGAAACAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 14 0.52
19 5 0.19
20 2 0.07
21 6 0.22
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.18
Consensus pattern (19 bp):
AAAAAAGAAAAATAATAAT
Found at i:9188530 original size:2 final size:2
Alignment explanation
Indices: 9188525--9188559 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9188515 AAAGAAACAA
9188525 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9188560 ATAATAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9189409 original size:38 final size:37
Alignment explanation
Indices: 9189358--9189432 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
9189348 TATTAAAAAA
*
9189358 ATCTATTTTAGGAGCCCTAGTGACACTAAACTCCTTG
1 ATCTATTTTAGGAGCCCTAGTGAAACTAAACTCCTTG
9189395 ATCTATTTTTAGGAGCCCTAGTGAAACTAAACTCCTTG
1 ATCTA-TTTTAGGAGCCCTAGTGAAACTAAACTCCTTG
9189433 TTTGGTTGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 5 0.14
38 31 0.86
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (37 bp):
ATCTATTTTAGGAGCCCTAGTGAAACTAAACTCCTTG
Found at i:9192221 original size:60 final size:60
Alignment explanation
Indices: 9192157--9192310 Score: 166
Period size: 60 Copynumber: 2.5 Consensus size: 60
9192147 CATGTATTTC
* * * * * ** * **
9192157 TTATTTTAAAATAGTCCCTAAATTTTTAAATATTTTAATTTCATCCTTATACTATGGTTT
1 TTATTCTAAATTAGTCCCTAAATTTTTAAACATTTCAATTCCATCCACAAACTATGACTT
* *
9192217 TTATTCTAAATTAGT-CCTCAAACTTTTGAACATTTCAATTCCATCCACAAACTATGACTT
1 TTATTCTAAATTAGTCCCT-AAATTTTTAAACATTTCAATTCCATCCACAAACTATGACTT
*
9192277 TTATTCTAAATTAGTCCCTAAACTTTTTGAACAT
1 TTATTCTAAATTAGTCCCTAAA-TTTTTAAACAT
9192311 GCCAATTTAA
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
59 3 0.04
60 62 0.79
61 13 0.17
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (60 bp):
TTATTCTAAATTAGTCCCTAAATTTTTAAACATTTCAATTCCATCCACAAACTATGACTT
Found at i:9193901 original size:173 final size:173
Alignment explanation
Indices: 9193608--9193957 Score: 693
Period size: 173 Copynumber: 2.0 Consensus size: 173
9193598 CTGTCACAAA
9193608 ACAA-CTTGGATGGTTGGTCCTGTTTCACTCCTAGCTTGCTTAGCAATCCACTTAGCCAAACTAA
1 ACAATCTTGGATGGTTGGTCCTGTTTCACTCCTAGCTTGCTTAGCAATCCACTTAGCCAAACTAA
9193672 TTCTGCTGTAGTCATAGCCATACTTCTATACTCAGTTTCAGCTGAAGAACGAGCTATTGTGTTCT
66 TTCTGCTGTAGTCATAGCCATACTTCTATACTCAGTTTCAGCTGAAGAACGAGCTATTGTGTTCT
9193737 GCTTTTTTGACTTCCACAAAATCAAGGAATTCTCAAGTTTTAC
131 GCTTTTTTGACTTCCACAAAATCAAGGAATTCTCAAGTTTTAC
9193780 ACAATCTTGGATGGTTGGTCCTGTTTCACTCCTAGCTTGCTTAGCAATCCACTTAGCCAAACTAA
1 ACAATCTTGGATGGTTGGTCCTGTTTCACTCCTAGCTTGCTTAGCAATCCACTTAGCCAAACTAA
9193845 TTCTGCTGTAGTCATAGCCATACTTCTATACTCAGTTTCAGCTGAAGAACGAGCTATTGTGTTCT
66 TTCTGCTGTAGTCATAGCCATACTTCTATACTCAGTTTCAGCTGAAGAACGAGCTATTGTGTTCT
9193910 GCTTTTTTGACTTCCACAAAATCAAGGAATTCTCAAGTTTTAC
131 GCTTTTTTGACTTCCACAAAATCAAGGAATTCTCAAGTTTTAC
9193953 ACAAT
1 ACAAT
9193958 ATGCTGTTAC
Statistics
Matches: 177, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
172 4 0.02
173 173 0.98
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (173 bp):
ACAATCTTGGATGGTTGGTCCTGTTTCACTCCTAGCTTGCTTAGCAATCCACTTAGCCAAACTAA
TTCTGCTGTAGTCATAGCCATACTTCTATACTCAGTTTCAGCTGAAGAACGAGCTATTGTGTTCT
GCTTTTTTGACTTCCACAAAATCAAGGAATTCTCAAGTTTTAC
Found at i:9202336 original size:14 final size:14
Alignment explanation
Indices: 9202317--9202343 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9202307 CGATAATTGG
9202317 ATCCAAGACATTAT
1 ATCCAAGACATTAT
9202331 ATCCAAGACATTA
1 ATCCAAGACATTA
9202344 CATCATGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26
Consensus pattern (14 bp):
ATCCAAGACATTAT
Found at i:9207502 original size:13 final size:13
Alignment explanation
Indices: 9207466--9207504 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
9207456 AATGACGCAT
9207466 AATGCGCGTCATA
1 AATGCGCGTCATA
**
9207479 AATGCATGTCATA
1 AATGCGCGTCATA
9207492 AATGCGCGTCATA
1 AATGCGCGTCATA
9207505 GATTTATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:9214624 original size:35 final size:35
Alignment explanation
Indices: 9214585--9214652 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
9214575 TGTCCTACCT
9214585 TAGTTTATATGCCTCACTAAGTGGAAACTTAGCTG
1 TAGTTTATATGCCTCACTAAGTGGAAACTTAGCTG
9214620 TAGTTTATATGCCTCACTAAGTGGAAACTTAGC
1 TAGTTTATATGCCTCACTAAGTGGAAACTTAGC
9214653 GTGTGATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (35 bp):
TAGTTTATATGCCTCACTAAGTGGAAACTTAGCTG
Found at i:9217863 original size:21 final size:21
Alignment explanation
Indices: 9217837--9217894 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
9217827 GTCGAGGGTT
* *
9217837 TTATGTGGTCATTCGGGATAA
1 TTATGTGGTCATTCAGGACAA
*
9217858 TTATGTGGTCCTTCAGGACAA
1 TTATGTGGTCATTCAGGACAA
*
9217879 ATATGTGG-CACTTCAG
1 TTATGTGGTCA-TTCAG
9217895 AGCAAACCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 1 0.03
21 30 0.97
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (21 bp):
TTATGTGGTCATTCAGGACAA
Found at i:9217900 original size:21 final size:22
Alignment explanation
Indices: 9217859--9217914 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 22
9217849 TCGGGATAAT
9217859 TATGTGGTCCTTCAGGACAAA-
1 TATGTGGTCCTTCAGGACAAAC
9217880 TATGTGG-CACTTCA-GAGCAAACC
1 TATGTGGTC-CTTCAGGA-CAAA-C
9217903 TATGTGGTCCTT
1 TATGTGGTCCTT
9217915 TGTGATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 3 0.10
21 16 0.53
23 10 0.33
24 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (22 bp):
TATGTGGTCCTTCAGGACAAAC
Found at i:9224690 original size:21 final size:21
Alignment explanation
Indices: 9224644--9224713 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
9224634 TTATGTTATC
* *
9224644 CTTCGGGACAATTATGTGGTC-
1 CTTCGGGAAAAATATGTGG-CA
*
9224665 TTTCGGGAAAAATATGTGGCA
1 CTTCGGGAAAAATATGTGGCA
* *
9224686 CTTCGGTGCAAAACTATGTTGCA
1 CTTCGG-G-AAAAATATGTGGCA
9224709 CTTCG
1 CTTCG
9224714 ATGCAAACCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 1 0.03
21 21 0.52
22 1 0.03
23 17 0.43
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (21 bp):
CTTCGGGAAAAATATGTGGCA
Found at i:9224703 original size:23 final size:23
Alignment explanation
Indices: 9224672--9224737 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
9224662 GTCTTTCGGG
* *
9224672 AAAAATATGTGGCACTTCGGTGC
1 AAAACTATGTGGCACTTCGATGC
*
9224695 AAAACTATGTTGCACTTCGATGC
1 AAAACTATGTGGCACTTCGATGC
*
9224718 AAACCTATGTGGTCA-TTCGA
1 AAAACTATGTGG-CACTTCGA
9224738 GACAATTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 35 0.95
24 2 0.05
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAACTATGTGGCACTTCGATGC
Found at i:9226445 original size:23 final size:20
Alignment explanation
Indices: 9226419--9226477 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 20
9226409 CATATTAACA
9226419 CACACATATAACATATATAAATT
1 CACACATATAA-ATATAT--ATT
*
9226442 CACACACATAAAT-TATATT
1 CACACATATAAATATATATT
*
9226461 AACACATAT-AATATATA
1 CACACATATAAATATATA
9226478 CTATTTAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 3 0.09
19 14 0.44
21 3 0.09
22 2 0.06
23 10 0.31
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.31
Consensus pattern (20 bp):
CACACATATAAATATATATT
Found at i:9227915 original size:22 final size:20
Alignment explanation
Indices: 9227886--9227937 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
9227876 TTTATAAAAG
**
9227886 TTTTCTTTTCTTTTATTTCAT
1 TTTTCTTTTAATTTATTT-AT
9227907 TTTTACTTTTAATTTATTTA-
1 TTTT-CTTTTAATTTATTTAT
9227927 TTTTCTTTTAA
1 TTTTCTTTTAA
9227938 AATGCTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 5 0.18
22 12 0.43
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTAATTTATTTAT
Found at i:9236616 original size:21 final size:21
Alignment explanation
Indices: 9236587--9236626 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9236577 ATATATGTTA
* *
9236587 TATGTGGTCCTTTAGGACATC
1 TATGAGGTCATTTAGGACATC
*
9236608 TATGAGGTCATTTGGGACA
1 TATGAGGTCATTTAGGACA
9236627 AATTTTTATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (21 bp):
TATGAGGTCATTTAGGACATC
Found at i:9236780 original size:170 final size:170
Alignment explanation
Indices: 9236498--9236837 Score: 664
Period size: 170 Copynumber: 2.0 Consensus size: 170
9236488 TAAATTATAA
9236498 TGCCCATGTTATGTGATATGAGAGCTAGGGGTATAGTTGGCATGCTAAGAGTCGAGGGTTACATG
1 TGCCCATGTTATGTGATATGAGAGCTAGGGGTATAGTTGGCATGCTAAGAGTCGAGGGTTACATG
9236563 TGGTTATTCGGGACATATATGTTATATGTGGTCCTTTAGGACATCTATGAGGTCATTTGGGACAA
66 TGGTTATTCGGGACATATATGTTATATGTGGTCCTTTAGGACATCTATGAGGTCATTTGGGACAA
9236628 A-TTTTTATGCCCCTAGTGGGACCTTATAACGAGCTGTGGT
131 ATTTTTTATGCCCCTAGTGGGACCTTAT-ACGAGCTGTGGT
9236668 TGCCCATGTTATGTGATATGAGAGCTAGGGGTATAGTTGGCATGCTAAGAGTCGAGGGTTACATG
1 TGCCCATGTTATGTGATATGAGAGCTAGGGGTATAGTTGGCATGCTAAGAGTCGAGGGTTACATG
9236733 TGGTTATTCGGGACATATATGTTATATGTGGTCCTTTAGGACATCTATGAGGTCATTTGGGACAA
66 TGGTTATTCGGGACATATATGTTATATGTGGTCCTTTAGGACATCTATGAGGTCATTTGGGACAA
9236798 ATTTTTTATGCCCCTAGTGGGACCTTATACGAGCTGTGGT
131 ATTTTTTATGCCCCTAGTGGGACCTTATACGAGCTGTGGT
9236838 GACAGCATAT
Statistics
Matches: 169, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
170 143 0.85
171 26 0.15
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (170 bp):
TGCCCATGTTATGTGATATGAGAGCTAGGGGTATAGTTGGCATGCTAAGAGTCGAGGGTTACATG
TGGTTATTCGGGACATATATGTTATATGTGGTCCTTTAGGACATCTATGAGGTCATTTGGGACAA
ATTTTTTATGCCCCTAGTGGGACCTTATACGAGCTGTGGT
Found at i:9236786 original size:21 final size:21
Alignment explanation
Indices: 9236757--9236796 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9236747 ATATATGTTA
* *
9236757 TATGTGGTCCTTTAGGACATC
1 TATGAGGTCATTTAGGACATC
*
9236778 TATGAGGTCATTTGGGACA
1 TATGAGGTCATTTAGGACA
9236797 AATTTTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (21 bp):
TATGAGGTCATTTAGGACATC
Found at i:9237052 original size:17 final size:18
Alignment explanation
Indices: 9237021--9237063 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
9237011 TAAAAGGAAT
*
9237021 TAATGATAATAATG-TAA
1 TAATGATAAGAATGTTAA
*
9237038 TAATGATAAGCATGTTAA
1 TAATGATAAGAATGTTAA
*
9237056 TGATGATA
1 TAATGATA
9237064 TATGTGTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.35
Consensus pattern (18 bp):
TAATGATAAGAATGTTAA
Found at i:9268616 original size:90 final size:89
Alignment explanation
Indices: 9268495--9268667 Score: 292
Period size: 90 Copynumber: 1.9 Consensus size: 89
9268485 TAATCCCGAA
* * *
9268495 TATTTAATTTCAATTAATTAAATATATATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAATATGAT
9268560 TAGGGTAACGTGGATATAAGAGGAT
65 TAGGGTAACGTGGATATAAGAGGAT
9268585 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
* *
9268650 AGGGTAACTTGGCTATAA
66 AGGGTAACGTGGATATAA
9268668 AAGGGTGTGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 29 0.37
90 49 0.63
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (89 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
AGGGTAACGTGGATATAAGAGGAT
Found at i:9275023 original size:18 final size:18
Alignment explanation
Indices: 9274976--9275024 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
9274966 GCTATACAAG
* *
9274976 TGTGACTATTCCAAGACT
1 TGTGTCTATTCTAAGACT
9274994 TGTGTCTATTCTAAGACT
1 TGTGTCTATTCTAAGACT
9275012 TGTGTCTATTCTA
1 TGTGTCTATTCTA
9275025 GATATAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (18 bp):
TGTGTCTATTCTAAGACT
Found at i:9275412 original size:90 final size:89
Alignment explanation
Indices: 9275297--9275469 Score: 301
Period size: 90 Copynumber: 1.9 Consensus size: 89
9275287 TAATCCCGAA
* *
9275297 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAAAATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAAAATGAT
9275362 TAGGGTAACTTGGATATAAGAGGAT
65 TAGGGTAACTTGGATATAAGAGGAT
*
9275387 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAAAATGATT
*
9275452 AGGGTAACTTGGCTATAA
66 AGGGTAACTTGGATATAA
9275470 AAGGTGTGTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 29 0.37
90 50 0.63
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.38
Consensus pattern (89 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAAAATGATT
AGGGTAACTTGGATATAAGAGGAT
Found at i:9279649 original size:31 final size:31
Alignment explanation
Indices: 9279614--9279672 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
9279604 ACTGAATTAA
9279614 TATTTTAAATAAAAGATAAATGTTTTGTCGG
1 TATTTTAAATAAAAGATAAATGTTTTGTCGG
*
9279645 TATTTTAAATAAAAGATATATGTTTTGT
1 TATTTTAAATAAAAGATAAATGTTTTGT
9279673 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.46
Consensus pattern (31 bp):
TATTTTAAATAAAAGATAAATGTTTTGTCGG
Found at i:9279682 original size:30 final size:30
Alignment explanation
Indices: 9279610--9279682 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
9279600 TATCACTGAA
9279610 TTAATATTTTAAATAAAAGATAAATGTTTTG
1 TTAA-ATTTTAAATAAAAGATAAATGTTTTG
*** *
9279641 TCGGTATTTTAAATAAAAGATATATGTTTTG
1 T-TAAATTTTAAATAAAAGATAAATGTTTTG
9279672 TTAAATTTTAA
1 TTAAATTTTAA
9279683 GTTATCTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
30 7 0.21
31 27 0.79
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (30 bp):
TTAAATTTTAAATAAAAGATAAATGTTTTG
Found at i:9282093 original size:29 final size:29
Alignment explanation
Indices: 9282051--9282138 Score: 167
Period size: 29 Copynumber: 3.0 Consensus size: 29
9282041 ATTTTCACCT
9282051 AACTAAATTGATGTAAGCTATGACATCAA
1 AACTAAATTGATGTAAGCTATGACATCAA
9282080 AACTAAATTGATGTAAGCTATGACATCAA
1 AACTAAATTGATGTAAGCTATGACATCAA
*
9282109 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCTATGACATCAA
9282138 A
1 A
9282139 TTAATTTAGG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCTATGACATCAA
Found at i:9286683 original size:29 final size:29
Alignment explanation
Indices: 9286641--9286699 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
9286631 ATTTTCCCCT
9286641 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
9286670 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
9286699 A
1 A
9286700 TTAATTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:9293499 original size:20 final size:20
Alignment explanation
Indices: 9293474--9293516 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
9293464 TTCTTATGGT
9293474 GTATGCAAACCGGAACGAAG
1 GTATGCAAACCGGAACGAAG
9293494 GTATGCAAACCGGAACGAAG
1 GTATGCAAACCGGAACGAAG
9293514 GTA
1 GTA
9293517 AACTTAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.30, T:0.12
Consensus pattern (20 bp):
GTATGCAAACCGGAACGAAG
Found at i:9306605 original size:34 final size:35
Alignment explanation
Indices: 9306534--9306628 Score: 129
Period size: 34 Copynumber: 2.7 Consensus size: 35
9306524 TCATCAACCC
*
9306534 CATGCAACATATAACGTTTATTCATTCCTTCATTCATT
1 CATGCAACATATAACGTTTATGCA---CTTCATTCATT
9306572 CATGCAACATATAACGTTTATGCA-TTCATTCATT
1 CATGCAACATATAACGTTTATGCACTTCATTCATT
* *
9306606 CATGCAACATATAATGTTCATGC
1 CATGCAACATATAACGTTTATGC
9306629 TTAAGAGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
34 31 0.57
38 23 0.43
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (35 bp):
CATGCAACATATAACGTTTATGCACTTCATTCATT
Found at i:9306627 original size:18 final size:17
Alignment explanation
Indices: 9306570--9306628 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 17
9306560 CCTTCATTCA
9306570 TTCATGCAACATATAACG
1 TTCATGCAACATATAA-G
* * *
9306588 TTTATGCATTCAT-TCA-
1 TTCATGCA-ACATATAAG
9306604 TTCATGCAACATATAATG
1 TTCATGCAACATATAA-G
9306622 TTCATGC
1 TTCATGC
9306629 TTAAGAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
15 3 0.10
16 9 0.29
18 16 0.52
19 3 0.10
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (17 bp):
TTCATGCAACATATAAG
Found at i:9308103 original size:82 final size:84
Alignment explanation
Indices: 9307962--9308152 Score: 212
Period size: 82 Copynumber: 2.3 Consensus size: 84
9307952 AAAAACATAG
* * * * * *
9307962 CTAAAGACTCATGCTTTAGTGGCATTTTTTATACAAACGTCGATATAGACTTGTACTTTAGTTG-
1 CTAAAGACTCGTACTTTAGTGGCAGTTTTTATACAAACGACGATAAAGACTCGTACTTTAGTTGT
9308026 CGTT-T-TTATACAAACACCA
66 C-TTGTGTT-TACAAACACCA
* *
9308045 CTATAGACTCGTACTTTAGTGGC-GTTTTTATACAAAC-ACAGCTAAAGACTCGTACTTTAGTTG
1 CTAAAGACTCGTACTTTAGTGGCAGTTTTTATACAAACGAC-GATAAAGACTCGTACTTTAGTTG
* *
9308108 TTCTTGTGTTTACAAACGCCG
65 -TCTTGTGTTTACAAACACCA
*
9308129 CTAAAGACTAGTACTTTAGTGGCA
1 CTAAAGACTCGTACTTTAGTGGCA
9308153 TTTATGTTTA
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
81 1 0.01
82 33 0.37
83 22 0.24
84 32 0.36
85 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (84 bp):
CTAAAGACTCGTACTTTAGTGGCAGTTTTTATACAAACGACGATAAAGACTCGTACTTTAGTTGT
CTTGTGTTTACAAACACCA
Found at i:9308136 original size:43 final size:41
Alignment explanation
Indices: 9307961--9308148 Score: 182
Period size: 41 Copynumber: 4.5 Consensus size: 41
9307951 CAAAAACATA
* * * * **
9307961 GCTAAAGACTCATGCTTTAGTGGCATTTTTTATACAAACGTC
1 GCTAAAGACTCGTACTTTAGTTGC-GTTTTTATACAAACACC
* * *
9308003 GATATAGACTTGTACTTTAGTTGCGTTTTTATACAAACACC
1 GCTAAAGACTCGTACTTTAGTTGCGTTTTTATACAAACACC
* * * *
9308044 ACTATAGACTCGTACTTTAGTGGCGTTTTTATACAAACACA
1 GCTAAAGACTCGTACTTTAGTTGCGTTTTTATACAAACACC
*
9308085 GCTAAAGACTCGTACTTTAGTTGTTC-TTGTGTT-TACAAACGCC
1 GCTAAAGACTCGTACTTTAGTTG--CGTT-T-TTATACAAACACC
*
9308128 GCTAAAGACTAGTACTTTAGT
1 GCTAAAGACTCGTACTTTAGT
9308149 GGCATTTATG
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
41 70 0.57
42 20 0.16
43 30 0.25
44 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (41 bp):
GCTAAAGACTCGTACTTTAGTTGCGTTTTTATACAAACACC
Found at i:9311228 original size:41 final size:41
Alignment explanation
Indices: 9311156--9311284 Score: 152
Period size: 41 Copynumber: 3.1 Consensus size: 41
9311146 TTAGAACATT
* *
9311156 ATTTGGAAAA-AATGCCGCTAAATATCTTTACCTTTAGCGGC
1 ATTTGTAAAACAATGCCGCT-AATATCATTACCTTTAGCGGC
* * *
9311197 GTTTGTAAAACAATGCCGCTCATATCATTACCTTTAGCAGC
1 ATTTGTAAAACAATGCCGCTAATATCATTACCTTTAGCGGC
* * * * *
9311238 ATTTGCAAAACAACGCCGCTAAAAACATAACCTTTAGCGGC
1 ATTTGTAAAACAATGCCGCTAATATCATTACCTTTAGCGGC
9311279 ATTTGT
1 ATTTGT
9311285 TTCAAGTGTG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 64 0.88
42 9 0.12
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (41 bp):
ATTTGTAAAACAATGCCGCTAATATCATTACCTTTAGCGGC
Found at i:9312314 original size:6 final size:6
Alignment explanation
Indices: 9312305--9312329 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9312295 TGTCCCGTCC
9312305 CCGTAT CCGTAT CCGTAT CCGTAT C
1 CCGTAT CCGTAT CCGTAT CCGTAT C
9312330 TATATCGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (6 bp):
CCGTAT
Found at i:9313431 original size:39 final size:39
Alignment explanation
Indices: 9313388--9313600 Score: 149
Period size: 39 Copynumber: 5.8 Consensus size: 39
9313378 TATAGTATAG
9313388 TTTTGAAAACATATATATAATATATAGTTTTTGAAAACA
1 TTTTGAAAACATATATATAATATATAGTTTTTGAAAACA
*
9313427 TTTTGAAAACATATATATAGTATATAGTTTTTG-AAA-A
1 TTTTGAAAACATATATATAATATATAGTTTTTGAAAACA
* *
9313464 ---T----ATATATA-AT-ATATA-G-TTTTTGAAAACA
1 TTTTGAAAACATATATATAATATATAGTTTTTGAAAACA
* * *
9313492 TTTGGAATATATATATATATATATATAG-TTTTGAAAAACGA
1 TTTTGAAAACATATATATA-ATATATAGTTTTTG-AAAAC-A
* *
9313533 CTTTTGAAAACATATATAT--TATATAG-TTTCGAAAATAA
1 -TTTTGAAAACATATATATAATATATAGTTTTTGAAAA-CA
* *
9313571 TTTTTGAAAGC--ATATATCATATATAGTTTT
1 -TTTTGAAAACATATATATAATATATAGTTTT
9313601 AAAAATGATT
Statistics
Matches: 140, Mismatches: 13, Indels: 42
0.72 0.07 0.22
Matches are distributed among these distances:
26 6 0.04
27 3 0.02
28 5 0.04
29 2 0.01
30 6 0.04
34 1 0.01
35 7 0.05
36 8 0.06
37 1 0.01
38 29 0.21
39 51 0.36
40 5 0.04
41 1 0.01
42 15 0.11
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (39 bp):
TTTTGAAAACATATATATAATATATAGTTTTTGAAAACA
Found at i:9313440 original size:28 final size:27
Alignment explanation
Indices: 9313383--9313441 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
9313373 ATTAATATAG
* *
9313383 TATAGTTTTGAAAACATATATATAATA
1 TATAGTTTTGAAAACATATATAAAACA
*
9313410 TATAGTTTTTGAAAACAT-TTTGAAAACA
1 TATAG-TTTTGAAAACATATAT-AAAACA
9313438 TATA
1 TATA
9313442 TATAGTATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (27 bp):
TATAGTTTTGAAAACATATATAAAACA
Found at i:9313458 original size:28 final size:28
Alignment explanation
Indices: 9313427--9313492 Score: 109
Period size: 26 Copynumber: 2.4 Consensus size: 28
9313417 TTTGAAAACA
*
9313427 TTTTGAAAACATATATATAGTATATAGT
1 TTTTGAAAACATATATATAATATATAGT
9313455 TTTTG-AAA-ATATATATAATATATAGT
1 TTTTGAAAACATATATATAATATATAGT
9313481 TTTTGAAAACAT
1 TTTTGAAAACAT
9313493 TTGGAATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
26 22 0.63
27 6 0.17
28 7 0.20
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (28 bp):
TTTTGAAAACATATATATAATATATAGT
Found at i:9313478 original size:65 final size:65
Alignment explanation
Indices: 9313363--9313528 Score: 228
Period size: 65 Copynumber: 2.5 Consensus size: 65
9313353 CTTATTTAGT
*
9313363 ATATATATATATTAATATAGTATAGTTTTGAAAACATATATATAATATATAGTTTTTGAAAACAT
1 ATATACATATA-T-ATATA-TATAGTTTTG-AAA-ATATATATAATATATAGTTTTTGAAAACAT
*
9313428 TTTGA
61 TTGGA
9313433 A-A-ACATATATATAGTATATAGTTTTTGAAAATATATATAATATATAGTTTTTGAAAACATTTG
1 ATATACATATATATA-TATATAG-TTTTGAAAATATATATAATATATAGTTTTTGAAAACATTTG
9313496 GA
64 GA
*
9313498 ATATATATATATATATATATAGTTTTGAAAA
1 ATATACATATATATATATATAGTTTTGAAAA
9313529 ACGACTTTTG
Statistics
Matches: 89, Mismatches: 3, Indels: 13
0.85 0.03 0.12
Matches are distributed among these distances:
65 44 0.49
66 19 0.21
67 18 0.20
68 6 0.07
69 1 0.01
70 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.43
Consensus pattern (65 bp):
ATATACATATATATATATATAGTTTTGAAAATATATATAATATATAGTTTTTGAAAACATTTGGA
Found at i:9313500 original size:26 final size:26
Alignment explanation
Indices: 9313427--9313504 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 26
9313417 TTTGAAAACA
*
9313427 TTTTGAAAACATATATATAGTATATAGT
1 TTTTGAAAACATATAGA-A-TATATAGT
* *
9313455 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAACATATAGAATATATAGT
* *
9313481 TTTTGAAAACATTTGGAATATATA
1 TTTTGAAAACATATAGAATATATA
9313505 TATATATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 28 0.62
27 1 0.02
28 16 0.36
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (26 bp):
TTTTGAAAACATATAGAATATATAGT
Found at i:9313520 original size:40 final size:41
Alignment explanation
Indices: 9313459--9313561 Score: 128
Period size: 40 Copynumber: 2.6 Consensus size: 41
9313449 TATAGTTTTT
9313459 GAAAATATATATA-ATATATAGTTTTTG-AAAAC-A-TTTG
1 GAAAATATATATATATATATAGTTTTTGAAAAACGACTTTG
*
9313496 GAATATATATATATATATATATAG-TTTTGAAAAACGACTTTT
1 GAA-A-ATATATATATATATATAGTTTTTGAAAAACGACTTTG
*
9313538 GAAAACATATATAT-TATATAGTTT
1 GAAAATATATATATATATATAGTTT
9313562 CGAAAATAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
37 3 0.05
38 1 0.02
39 21 0.37
40 24 0.42
41 2 0.04
42 6 0.11
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.42
Consensus pattern (41 bp):
GAAAATATATATATATATATAGTTTTTGAAAAACGACTTTG
Found at i:9313548 original size:38 final size:37
Alignment explanation
Indices: 9313454--9313638 Score: 137
Period size: 38 Copynumber: 4.8 Consensus size: 37
9313444 TAGTATATAG
*
9313454 TTTTTGAAAATATATATAATATATAGTTTTTG-AAAACA
1 TTTTTGAAAACATATAT-ATATATAG-TTTTGAAAAACA
* *
9313492 -TTTGGAATATATATATATATATATATAGTTTTGAAAAACGA
1 TTTTTG-A-A-A-ACATATATATATATAGTTTTGAAAAAC-A
* *
9313533 CTTTTGAAAACATATATATTATATAGTTTCGAAAATA-A
1 TTTTTGAAAACATATATA-TATATAGTTTTGAAAA-ACA
* *
9313571 TTTTTGAAAGCATATATCATATATAGTTTT-AAAAATGA
1 TTTTTGAAAACATATAT-ATATATAGTTTTGAAAAA-CA
* *
9313609 TTTTTTTGAAAACATAT-TATTTTTAGTTTT
1 --TTTTTGAAAACATATATATATATAGTTTT
9313639 TATTATATAT
Statistics
Matches: 123, Mismatches: 10, Indels: 28
0.76 0.06 0.17
Matches are distributed among these distances:
36 1 0.01
37 8 0.07
38 46 0.37
39 24 0.20
40 30 0.24
41 10 0.08
42 4 0.03
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAACATATATATATATAGTTTTGAAAAACA
Found at i:9313660 original size:32 final size:29
Alignment explanation
Indices: 9313624--9313695 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 29
9313614 TTGAAAACAT
9313624 ATTATTTTTAGTTT-TTATTATATATTATATTA
1 ATTATTTTTA-TTTATTATT-T-TATTA-ATTA
9313656 ATTATTTTTATTTATTATTTTATTAATTA
1 ATTATTTTTATTTATTATTTTATTAATTA
9313685 ATAATATTTTT
1 AT--TATTTTT
9313696 CCCGATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
29 6 0.16
30 5 0.14
31 11 0.30
32 15 0.41
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (29 bp):
ATTATTTTTATTTATTATTTTATTAATTA
Found at i:9313661 original size:12 final size:12
Alignment explanation
Indices: 9313636--9313684 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
9313626 TATTTTTAGT
9313636 TTTTATT-ATATA
1 TTTTATTAAT-TA
*
9313648 TTATATTAATTA
1 TTTTATTAATTA
*
9313660 TTTTTATTTATTA
1 -TTTTATTAATTA
9313673 TTTTATTAATTA
1 TTTTATTAATTA
9313685 ATAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTATTAATTA
Found at i:9313674 original size:25 final size:25
Alignment explanation
Indices: 9313635--9313684 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
9313625 TTATTTTTAG
9313635 TTTTTATTATATATTATATTAATTA
1 TTTTTATTATATATTATATTAATTA
*
9313660 TTTTTATT-TATTATTTTATTAATTA
1 TTTTTATTATA-TATTATATTAATTA
9313685 ATAATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (25 bp):
TTTTTATTATATATTATATTAATTA
Found at i:9313692 original size:25 final size:26
Alignment explanation
Indices: 9313641--9313693 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
9313631 TTAGTTTTTA
* **
9313641 TTATATATTATATTAATTATTTTTAT
1 TTATATATTATATTAATTAATAATAT
*
9313667 TTAT-TATTTTATTAATTAATAATAT
1 TTATATATTATATTAATTAATAATAT
9313692 TT
1 TT
9313694 TTCCCGATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (26 bp):
TTATATATTATATTAATTAATAATAT
Found at i:9319308 original size:99 final size:100
Alignment explanation
Indices: 9319195--9319384 Score: 265
Period size: 99 Copynumber: 1.9 Consensus size: 100
9319185 ATTATAATAT
* * * * *
9319195 TATATTATACAATAAACCTTGTGCTATCCCTCTAGAGAAATTGCTTAATTACCCCGATTTTATGG
1 TATATTATACAATAAACCATGAGCTATCCCTCTAGAGAAATTGCTTAATCACCCCGACTTTATAG
*
9319260 ATAAGATTCAGCTAGCCTAATAAAGGTGATTATAA
66 ATAAGATTCAACTAGCCTAATAAAGGTGATTATAA
* * * * * *
9319295 TATA-TATACAATAAAGCATGAGCTGTCCCTCTAGAGAAATTGGTTAATCGCCCTGGCTTTATAG
1 TATATTATACAATAAACCATGAGCTATCCCTCTAGAGAAATTGCTTAATCACCCCGACTTTATAG
9319359 ATAAGATTCAACTAGCCTAATAAAGG
66 ATAAGATTCAACTAGCCTAATAAAGG
9319385 CAAATTACAA
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
99 74 0.95
100 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (100 bp):
TATATTATACAATAAACCATGAGCTATCCCTCTAGAGAAATTGCTTAATCACCCCGACTTTATAG
ATAAGATTCAACTAGCCTAATAAAGGTGATTATAA
Found at i:9321423 original size:37 final size:37
Alignment explanation
Indices: 9321353--9321593 Score: 252
Period size: 39 Copynumber: 6.2 Consensus size: 37
9321343 ATTAATATAG
*
9321353 TATAGTTTTTGAAGACATTTTGAAAACATATATATAATA
1 TATAGTTTTTGAAAACATTTTGAAAAC--ATATATAATA
*
9321392 AATAGTTTTTGAAAACATTTTGAAAACATATATATATATATA
1 TATAGTTTTTGAAAACATTTTGAAAAC----ATATATA-ATA
*
9321434 TATAGTTTTTGAAAACATTTTGAAAACATTTATAATA
1 TATAGTTTTTGAAAACATTTTGAAAACATATATAATA
* * *
9321471 TATAGTTTTTGAAAACAATTTGAAAATATATATACTA
1 TATAGTTTTTGAAAACATTTTGAAAACATATATAATA
*
9321508 TATAG-TTTTGAAAAACAATTTTTGAAAACATATATATTA
1 TATAGTTTTTG-AAAAC-A-TTTTGAAAACATATATAATA
** * * *
9321547 TATAG-TTTCAAAAATAATTTTTGAAAGCATATATCATA
1 TATAGTTTTTGAAAA-CA-TTTTGAAAACATATATAATA
9321585 TATAGTTTT
1 TATAGTTTT
9321594 AAAAATTATT
Statistics
Matches: 177, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
36 5 0.03
37 46 0.26
38 35 0.20
39 53 0.30
41 9 0.05
42 29 0.16
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.42
Consensus pattern (37 bp):
TATAGTTTTTGAAAACATTTTGAAAACATATATAATA
Found at i:9321456 original size:11 final size:11
Alignment explanation
Indices: 9321440--9321464 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9321430 TATATATAGT
9321440 TTTTGAAAACA
1 TTTTGAAAACA
9321451 TTTTGAAAACA
1 TTTTGAAAACA
9321462 TTT
1 TTT
9321465 ATAATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:9321486 original size:26 final size:28
Alignment explanation
Indices: 9321451--9321502 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
9321441 TTTGAAAACA
*
9321451 TTTTGAAAAC-ATTT-ATAATATATAGT
1 TTTTGAAAACAATTTGAAAATATATAGT
9321477 TTTTGAAAACAATTTGAAAATATATA
1 TTTTGAAAACAATTTGAAAATATATA
9321503 TACTATATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 10 0.43
27 4 0.17
28 9 0.39
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (28 bp):
TTTTGAAAACAATTTGAAAATATATAGT
Found at i:9321569 original size:38 final size:38
Alignment explanation
Indices: 9321347--9321618 Score: 213
Period size: 37 Copynumber: 7.0 Consensus size: 38
9321337 ATATATATTA
* *
9321347 ATATAGTATAGTTTTTGAAGAC-A-TTTTGAAAACATAT
1 ATATA-TATAGTTTTTAAAAACAATTTTTGAAAACATAT
*
9321384 ATATAATAAATAGTTTTTGAAAAC-A-TTTTGAAAACATATATATAT
1 ATAT-AT--ATAGTTTTTAAAAACAATTTTTGAAAAC------ATAT
* *
9321429 ATATATATAGTTTTTGAAAAC-A-TTTTGAAAACATTT
1 ATATATATAGTTTTTAAAAACAATTTTTGAAAACATAT
* *
9321465 ATAATATATAGTTTTTGAAAACAA--TTTGAAAATATAT
1 AT-ATATATAGTTTTTAAAAACAATTTTTGAAAACATAT
*
9321502 ATACTATATAGTTTTGAAAAACAATTTTTGAAAACATAT
1 ATA-TATATAGTTTTTAAAAACAATTTTTGAAAACATAT
* * *
9321541 ATATTATATAG-TTTCAAAAATAATTTTTGAAAGCATAT
1 ATA-TATATAGTTTTTAAAAACAATTTTTGAAAACATAT
* *
9321579 ATCATATATAG-TTTTAAAAATTATTTTTTTGAAAACATAT
1 AT-ATATATAGTTTTTAAAAA-CA-ATTTTTGAAAACATAT
9321619 TACTTTTAGT
Statistics
Matches: 204, Mismatches: 14, Indels: 31
0.82 0.06 0.12
Matches are distributed among these distances:
36 6 0.03
37 55 0.27
38 43 0.21
39 50 0.25
40 14 0.07
42 26 0.13
44 2 0.01
45 8 0.04
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (38 bp):
ATATATATAGTTTTTAAAAACAATTTTTGAAAACATAT
Found at i:9321629 original size:38 final size:36
Alignment explanation
Indices: 9321489--9321632 Score: 112
Period size: 38 Copynumber: 3.8 Consensus size: 36
9321479 TTGAAAACAA
* * *
9321489 TTTGAAAATATATATACTATATAGTTTTGAAAAACAATT
1 TTTGAAAACATAT-TACT-TTTAGTTTT-AAAAATAATT
*
9321528 TTTGAAAACATATATA-TTATATAGTTTCAAAAATAATT
1 TTTGAAAACATAT-TACTT-T-TAGTTTTAAAAATAATT
* * *
9321566 TTTGAAAGCATA-TATCATATATAGTTTTAAAAATTATTTT
1 TTTGAAAACATATTA-C-T-TTTAGTTTTAAAAA-TA-ATT
9321606 TTTGAAAACATATTACTTTTAGTTTTA
1 TTTGAAAACATATTACTTTTAGTTTTA
9321633 TTATATATTA
Statistics
Matches: 86, Mismatches: 10, Indels: 19
0.75 0.09 0.17
Matches are distributed among these distances:
36 2 0.02
37 1 0.01
38 41 0.48
39 25 0.29
40 15 0.17
41 2 0.02
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (36 bp):
TTTGAAAACATATTACTTTTAGTTTTAAAAATAATT
Found at i:9321662 original size:13 final size:12
Alignment explanation
Indices: 9321644--9321676 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
9321634 TATATATTAC
9321644 ATTAATTATTTTT
1 ATTAATTA-TTTT
9321657 ATTAATTATTTT
1 ATTAATTATTTT
9321669 ATTAATTA
1 ATTAATTA
9321677 ATATTTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTAATTATTTT
Found at i:9322947 original size:41 final size:41
Alignment explanation
Indices: 9322897--9322976 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
9322887 TTTCTTTTTA
*
9322897 TTCTGTTATTTTTT-TACTTAC-TTTCAAAATTTAACATTTCT
1 TTCTGTTATTTTTTAT-CTT-CTTTTCAAAAATTAACATTTCT
* *
9322938 TTCTTTTATTTTTTATCTTCTTTTTAAAAATTAACATTT
1 TTCTGTTATTTTTTATCTTCTTTTCAAAAATTAACATTT
9322977 TTCACTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 1 0.03
41 32 0.94
42 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.01, T:0.61
Consensus pattern (41 bp):
TTCTGTTATTTTTTATCTTCTTTTCAAAAATTAACATTTCT
Found at i:9322998 original size:51 final size:49
Alignment explanation
Indices: 9322942--9323051 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 49
9322932 ATTTCTTTCT
*
9322942 TTTATTTTTTATCTTCTTTTTAAAAATTAACA-TTT-TTCACTCTTTTTA-TTA
1 TTTATTTTTTAT-TTC-CTTTAAAAATTAA-ATTTTCTTCA-T-TTTTTATTTA
*
9322993 TTTATTTATTTATTTCCTTTAAAATTTAAATTTTCTTCATTTTTTATTTA
1 TTTATTT-TTTATTTCCTTTAAAAATTAAATTTTCTTCATTTTTTATTTA
*
9323043 GTTATTTTT
1 TTTATTTTT
9323052 ATTCTATTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
49 9 0.17
50 24 0.46
51 14 0.27
52 5 0.10
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.65
Consensus pattern (49 bp):
TTTATTTTTTATTTCCTTTAAAAATTAAATTTTCTTCATTTTTTATTTA
Found at i:9324955 original size:59 final size:59
Alignment explanation
Indices: 9324883--9324999 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 59
9324873 AATAGATGGA
* * * * *
9324883 TAAGTGTCCTATCGAACCTTCCTAGTCTCAATGAAAA-GACAAACTCGGTTATATGGCTC
1 TAAGTGTCCTATCGAACCCTCCTAGTCGCAATAAAAAGGA-AAACTCGATAATATGGCTC
*
9324942 TAAGTGTCCTATCGAACCCTCGTAGTCGCAATAAAAAGGAAAACTCGATAATATGGCT
1 TAAGTGTCCTATCGAACCCTCCTAGTCGCAATAAAAAGGAAAACTCGATAATATGGCT
9325000 ATAACCAACC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
59 49 0.96
60 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (59 bp):
TAAGTGTCCTATCGAACCCTCCTAGTCGCAATAAAAAGGAAAACTCGATAATATGGCTC
Found at i:9334875 original size:16 final size:16
Alignment explanation
Indices: 9334833--9334877 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
9334823 ATATATTAAG
9334833 TTCAAACATCC-AACA
1 TTCAAACATCCAAACA
* *
9334848 TCCATAATATCCAAACA
1 TTCA-AACATCCAAACA
9334865 TTCAAACATCCAA
1 TTCAAACATCCAA
9334878 TCCAAAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.12
16 14 0.58
17 7 0.29
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (16 bp):
TTCAAACATCCAAACA
Found at i:9342912 original size:65 final size:64
Alignment explanation
Indices: 9342841--9342995 Score: 195
Period size: 65 Copynumber: 2.4 Consensus size: 64
9342831 ACACTAGGGG
* * *
9342841 TGCATCGATGCATTAATTACATTCGATGTTTCAA-ACAAGCCAATAGTGCATCGATGCATGGTCT
1 TGCATCGATGCATAAAATACATTCGATGTTTCAATAAAAGCCAA-AGTGCATCGATGCATGGT-T
9342905 A
64 A
* ** * *
9342906 TGCATCGATGCATAAAATGCATTCGATGTTTCAATAAAATTCTAAGTGCATCGATGCATGGTTG
1 TGCATCGATGCATAAAATACATTCGATGTTTCAATAAAAGCCAAAGTGCATCGATGCATGGTTA
* *
9342970 TGCATCGGTGCATAAAATGCATTCGA
1 TGCATCGATGCATAAAATACATTCGA
9342996 AATGGGGTGT
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
64 26 0.32
65 49 0.61
66 5 0.06
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (64 bp):
TGCATCGATGCATAAAATACATTCGATGTTTCAATAAAAGCCAAAGTGCATCGATGCATGGTTA
Found at i:9343430 original size:20 final size:22
Alignment explanation
Indices: 9343405--9343446 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9343395 CAGGTTGCAC
*
9343405 TAAAAT-A-TTATACATGGTAA
1 TAAAATGAGTTATAAATGGTAA
9343425 TAAAATGAGTTATAAATGGTAA
1 TAAAATGAGTTATAAATGGTAA
9343447 ATGTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.33
Consensus pattern (22 bp):
TAAAATGAGTTATAAATGGTAA
Found at i:9343955 original size:263 final size:263
Alignment explanation
Indices: 9343473--9343956 Score: 602
Period size: 263 Copynumber: 1.8 Consensus size: 263
9343463 TAATATTTTA
* * * * *
9343473 GGTTGTGCCTAAAATGTTATCAGAGTTTAATGTAATTCAACATTGGATTTTCTCACGATAAGAAA
1 GGTTATGCCTAAAATGTTATCAGACTTTAATGTAATGCAACATTGAATTTTCCCACGATAAGAAA
** **
9343538 ATAAATTAAAAGCTGAAAATGTTATAAATATATATAAGAAATATGGTTTCGTCCAATAACATCAT
66 ATAAATTAAAAGCTGAAAATGTTATAAATATATATAAGAAATACAGTCGCGTCCAATAACATCAT
* *
9343603 GGTTAGTAAGAAAAAGGTTACGATCTGCAACGTTAATATTTTTATCAATAAAATAGGTTGCATCC
131 GGTTACTAAGAAAAAGGTTACGATATGCAACGTTAATATTTTTATCAATAAAATAGGTTGCATCC
* **
9343668 TAAAATGTCATGGTTTACTAAGAAAGCATGTTGCAATCTGAAATCTAAATATTTTTAATAATAAA
196 CAAAATGTCATGGTCCACTAAGAAAGCATGTTGCAATCTGAAATCTAAATATTTTTAATAATAAA
9343733 ATG
261 ATG
* * * *
9343736 GGTTATGCCTAAAATGTTATCAGACTTTAA-GTTGATGGAGCTTTGAATTTTCCCACGATAA-AA
1 GGTTATGCCTAAAATGTTATCAGACTTTAATG-TAATGCAACATTGAATTTTCCCACGATAAGAA
* * * * *
9343799 AAGT-AATTTAAGGTTGAAAATGTTATGAATATATATAAGAAATACAGTCGCGTCCAATAATATC
65 AA-TAAATTAAAAGCTGAAAATGTTATAAATATATATAAGAAATACAGTCGCGTCCAATAACATC
** * * *
9343863 ATGGTTCACTAAGAAATAA-GTTGTGATATGTAATGTTAATATTTTTATTAATAAAATAGGTTGC
129 ATGGTT-ACTAAGAAA-AAGGTTACGATATGCAACGTTAATATTTTTATCAATAAAATAGGTTGC
* *
9343927 A-CCCAAGAATG-CTATTGTCCATTAAGAAAG
192 ATCCCAA-AATGTC-ATGGTCCACTAAGAAAG
9343957 TAGATTGTGA
Statistics
Matches: 185, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
262 67 0.36
263 116 0.63
264 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (263 bp):
GGTTATGCCTAAAATGTTATCAGACTTTAATGTAATGCAACATTGAATTTTCCCACGATAAGAAA
ATAAATTAAAAGCTGAAAATGTTATAAATATATATAAGAAATACAGTCGCGTCCAATAACATCAT
GGTTACTAAGAAAAAGGTTACGATATGCAACGTTAATATTTTTATCAATAAAATAGGTTGCATCC
CAAAATGTCATGGTCCACTAAGAAAGCATGTTGCAATCTGAAATCTAAATATTTTTAATAATAAA
ATG
Found at i:9344546 original size:3 final size:3
Alignment explanation
Indices: 9344538--9344564 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9344528 TATCTTACTT
9344538 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
9344565 AAAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9346095 original size:29 final size:29
Alignment explanation
Indices: 9346057--9346121 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
9346047 CTTTTGCATC
*
9346057 TTTGCATCTTTGCATTTACATTCATATCT
1 TTTGCATCTTTGCATTTACATTCATAACT
9346086 TTTGCATCTTTGCATTTACATTCATAACT
1 TTTGCATCTTTGCATTTACATTCATAACT
9346115 TTTGCAT
1 TTTGCAT
9346122 TCGCATCTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.08, T:0.51
Consensus pattern (29 bp):
TTTGCATCTTTGCATTTACATTCATAACT
Found at i:9346134 original size:29 final size:28
Alignment explanation
Indices: 9346057--9346136 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 28
9346047 CTTTTGCATC
* *
9346057 TTTGCATCTTTGCATTTACATTCATATCT
1 TTTGCA-CTTCGCATTTACATTCATAACT
*
9346086 TTTGCATCTTTGCATTTACATTCATAACT
1 TTTGCA-CTTCGCATTTACATTCATAACT
9346115 TTTGCA-TTCGCATCTCTACATT
1 TTTGCACTTCGCAT-T-TACATT
9346137 ATACATTGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
27 6 0.13
28 1 0.02
29 40 0.85
ACGTcount: A:0.21, C:0.23, G:0.07, T:0.49
Consensus pattern (28 bp):
TTTGCACTTCGCATTTACATTCATAACT
Found at i:9347324 original size:20 final size:20
Alignment explanation
Indices: 9347291--9347341 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
9347281 TCAAACGACT
* *
9347291 GAAAGCATGCCAAAAGAT-A
1 GAAAACATGTCAAAAGATAA
9347310 GAAAAACATGTC-AAAGATAA
1 G-AAAACATGTCAAAAGATAA
9347330 GAAAACATGTCA
1 GAAAACATGTCA
9347342 TAAATACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.14
Consensus pattern (20 bp):
GAAAACATGTCAAAAGATAA
Found at i:9347325 original size:19 final size:19
Alignment explanation
Indices: 9347303--9347341 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9347293 AAGCATGCCA
9347303 AAAGAT-AGAAAAACATGTC
1 AAAGATAAG-AAAACATGTC
9347322 AAAGATAAGAAAACATGTC
1 AAAGATAAGAAAACATGTC
9347341 A
1 A
9347342 TAAATACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.59, C:0.10, G:0.15, T:0.15
Consensus pattern (19 bp):
AAAGATAAGAAAACATGTC
Found at i:9348510 original size:21 final size:21
Alignment explanation
Indices: 9348486--9348562 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 21
9348476 ACCGGAAACA
*
9348486 TTATTATTTCTACCGGTTTTG
1 TTATTATTTATACCGGTTTTG
*
9348507 TTATTATTGGGCATTTTACCGGTTTTG
1 TTATTA-T-----TTATACCGGTTTTG
* *
9348534 TTATTTTTTATTCCGGTTTTG
1 TTATTATTTATACCGGTTTTG
9348555 TTATTATT
1 TTATTATT
9348563 GGGTACTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
21 25 0.56
22 1 0.02
26 1 0.02
27 18 0.40
ACGTcount: A:0.14, C:0.10, G:0.16, T:0.60
Consensus pattern (21 bp):
TTATTATTTATACCGGTTTTG
Found at i:9348528 original size:48 final size:48
Alignment explanation
Indices: 9348474--9348578 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
9348464 GGTAAAAAAA
* *
9348474 TTACCGGAAACATTATTATTTCTACCGGTTTTGTTATTATTGGGCATT
1 TTACCGGAAACATTATTATTTATACCGGTTTTGTTATTATTGGGCACT
***** * * *
9348522 TTACCGGTTTTGTTATTTTTTATTCCGGTTTTGTTATTATTGGGTACT
1 TTACCGGAAACATTATTATTTATACCGGTTTTGTTATTATTGGGCACT
9348570 TTA-CGGAAA
1 TTACCGGAAA
9348579 ATGTTAAAAA
Statistics
Matches: 44, Mismatches: 13, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
47 3 0.07
48 41 0.93
ACGTcount: A:0.20, C:0.12, G:0.18, T:0.50
Consensus pattern (48 bp):
TTACCGGAAACATTATTATTTATACCGGTTTTGTTATTATTGGGCACT
Found at i:9350683 original size:13 final size:14
Alignment explanation
Indices: 9350650--9350690 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
9350640 ATTCTTATAT
9350650 TTTTATTG-ACATA
1 TTTTATTGAACATA
9350663 TTTT-TTGAACA-A
1 TTTTATTGAACATA
9350675 TTTTATTG-ACATA
1 TTTTATTGAACATA
9350688 TTT
1 TTT
9350691 GAAAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (14 bp):
TTTTATTGAACATA
Found at i:9361429 original size:18 final size:18
Alignment explanation
Indices: 9361406--9361450 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
9361396 GAAAGGCCTA
*
9361406 GTAATAAATCTATTGTAT
1 GTAATAAATCTACTGTAT
9361424 GTAATAAATCTACTGTAT
1 GTAATAAATCTACTGTAT
*
9361442 GTACTAAAT
1 GTAATAAAT
9361451 GGGTGTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (18 bp):
GTAATAAATCTACTGTAT
Found at i:9363167 original size:21 final size:22
Alignment explanation
Indices: 9363143--9363197 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
9363133 CTCCTTGCTA
9363143 TGTATCGATACA-CCTTGAATG
1 TGTATCGATACATCCTTGAATG
* *
9363164 TGTACCAATACATTCCTTGAATG
1 TGTATCGATACA-TCCTTGAATG
9363187 TGTATCGATAC
1 TGTATCGATAC
9363198 CCCTCATGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 10 0.36
23 18 0.64
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (22 bp):
TGTATCGATACATCCTTGAATG
Found at i:9366372 original size:14 final size:14
Alignment explanation
Indices: 9366355--9366388 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
9366345 TTATATACGT
9366355 TATTATA-TATATAA
1 TATTATATTAT-TAA
9366369 TATTATATTATTAA
1 TATTATATTATTAA
9366383 TATTAT
1 TATTAT
9366389 TATTTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATATTATTAA
Found at i:9368487 original size:23 final size:23
Alignment explanation
Indices: 9368454--9368516 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
9368444 TATTTTATAT
*
9368454 GGCACTACGGTGCAATTCTAAGC
1 GGCACTTCGGTGCAATTCTAAGC
* * *
9368477 GGCACTTCGGTGCAATTGTACGT
1 GGCACTTCGGTGCAATTCTAAGC
*
9368500 GGCACTTCGATGCAATT
1 GGCACTTCGGTGCAATT
9368517 TATACGAGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTAAGC
Found at i:9371333 original size:54 final size:54
Alignment explanation
Indices: 9371251--9371358 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
9371241 CTATTCTATA
9371251 ATGGAGTAAACGCACCCACGAGGACGATGCTAGATGCCTCGGCAAATGGGACGT
1 ATGGAGTAAACGCACCCACGAGGACGATGCTAGATGCCTCGGCAAATGGGACGT
9371305 ATGGAGTAAACGCACCCACGAGGACGATGCTAGATGCCTCGGCAAATGGGACGT
1 ATGGAGTAAACGCACCCACGAGGACGATGCTAGATGCCTCGGCAAATGGGACGT
9371359 TACTTGACAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.24, G:0.31, T:0.15
Consensus pattern (54 bp):
ATGGAGTAAACGCACCCACGAGGACGATGCTAGATGCCTCGGCAAATGGGACGT
Found at i:9387288 original size:23 final size:23
Alignment explanation
Indices: 9387262--9387317 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
9387252 TATGGCACTA
9387262 CGGTGCAATTCTACGTGGGACTT
1 CGGTGCAATTCTACGTGGGACTT
* *
9387285 CGGTGCAATTCTTCGTGGTACTT
1 CGGTGCAATTCTACGTGGGACTT
9387308 CGGTGCAATT
1 CGGTGCAATT
9387318 TATAACAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (23 bp):
CGGTGCAATTCTACGTGGGACTT
Found at i:9388786 original size:23 final size:24
Alignment explanation
Indices: 9388741--9388786 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
9388731 ATTATTATAT
* *
9388741 GATTAATTATTATTAATACTTTAG
1 GATTAATTATTATGAATAATTTAG
*
9388765 GATT-ATTATTATGCATAATTTA
1 GATTAATTATTATGAATAATTTA
9388787 TAATTTAACC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
GATTAATTATTATGAATAATTTAG
Found at i:9395820 original size:20 final size:20
Alignment explanation
Indices: 9395797--9395840 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
9395787 TAAAGCCTCC
9395797 GGGTTATTAGTAAAACCTTT
1 GGGTTATTAGTAAAACCTTT
* *
9395817 GGGTTATTTGTAAATCCTTT
1 GGGTTATTAGTAAAACCTTT
9395837 GGGT
1 GGGT
9395841 CATCTGTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.25, T:0.43
Consensus pattern (20 bp):
GGGTTATTAGTAAAACCTTT
Found at i:9396178 original size:87 final size:86
Alignment explanation
Indices: 9396043--9396268 Score: 326
Period size: 87 Copynumber: 2.6 Consensus size: 86
9396033 CTCTCCATGA
* *
9396043 AAGAGTAGTGGAACAGATGTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTACTGAAGTAGTCC
1 AAGAGTAGTGGAACAGATTTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTACTGAAGTAATCC
* *
9396108 AACCAAATTTAACTCTCCACAG
66 AACCAAAATCAACTCTCC-CAG
* *
9396130 AAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTAGTGAAGTAATCC
1 AAGAGTAGTGGAACAGATTTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTACTGAAGTAATCC
** **
9396195 AACCAAAATCCGCTCTCCTGG
66 AACCAAAATCAACTCTCCCAG
* * *
9396216 AAGAGTAGTGGAACAGATTTTTCAGCAAAGTATGAAACCTTCATGAAAGAGTA
1 AAGAGTAGTGGAACAGATTTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTA
9396269 ATGCAAATTC
Statistics
Matches: 125, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
86 50 0.40
87 75 0.60
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (86 bp):
AAGAGTAGTGGAACAGATTTTTCAGCAAAGTATGAGACCTTCACGGAAGAGTACTGAAGTAATCC
AACCAAAATCAACTCTCCCAG
Found at i:9396567 original size:14 final size:14
Alignment explanation
Indices: 9396539--9396572 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
9396529 TTATATACAT
9396539 TATTATATATATAA
1 TATTATATATATAA
9396553 TATTATAT-TATTAA
1 TATTATATATA-TAA
9396567 TATTAT
1 TATTAT
9396573 TATTTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 17 0.89
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATATATATAA
Found at i:9400141 original size:18 final size:18
Alignment explanation
Indices: 9400118--9400179 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
9400108 TCATATCGGA
*
9400118 TCGGGTAGGCTGGTCAGG
1 TCGGGTAGACTGGTCAGG
* *
9400136 TCGGGTAAACTGGTCAGA
1 TCGGGTAGACTGGTCAGG
*
9400154 TCGGGTAGACGGGTCAGG
1 TCGGGTAGACTGGTCAGG
*
9400172 TTGGGTAG
1 TCGGGTAG
9400180 TTTCTAGAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.18, C:0.15, G:0.45, T:0.23
Consensus pattern (18 bp):
TCGGGTAGACTGGTCAGG
Found at i:9414683 original size:25 final size:25
Alignment explanation
Indices: 9414636--9414684 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9414626 TTCATTATTC
* * *
9414636 TTTTTTCTCTGGGATCTTGCGTCAA
1 TTTTTTCTCTAGGATCCTACGTCAA
*
9414661 TTTTTTCTTTAGGATCCTACGTCA
1 TTTTTTCTCTAGGATCCTACGTCA
9414685 GATTCTTCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.49
Consensus pattern (25 bp):
TTTTTTCTCTAGGATCCTACGTCAA
Found at i:9416861 original size:19 final size:19
Alignment explanation
Indices: 9416837--9416884 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
9416827 AATTTTAAAG
9416837 AAAGTAAAATAAAAAATAT
1 AAAGTAAAATAAAAAATAT
* *
9416856 AAAGTAAAATAAAAACTTT
1 AAAGTAAAATAAAAAATAT
9416875 AAAGTAAAAT
1 AAAGTAAAAT
9416885 GTAAGAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
AAAGTAAAATAAAAAATAT
Found at i:9422149 original size:19 final size:19
Alignment explanation
Indices: 9422121--9422170 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
9422111 AGTTAGTTTT
9422121 GGTATCGATACTGACGGTA
1 GGTATCGATACTGACGGTA
*
9422140 GGTATTGATACTGACGGTA
1 GGTATCGATACTGACGGTA
*
9422159 GGTATCAATACT
1 GGTATCGATACT
9422171 AATTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (19 bp):
GGTATCGATACTGACGGTA
Found at i:9422303 original size:19 final size:20
Alignment explanation
Indices: 9422279--9422328 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
9422269 AGTCGGTTTT
*
9422279 AGTATCGATACC-AAGGGTG
1 AGTATCGATACCGAAGGGTC
*
9422298 AGTATCGATACCGAGGGGTC
1 AGTATCGATACCGAAGGGTC
*
9422318 AATATCGATAC
1 AGTATCGATAC
9422329 TGAGAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (20 bp):
AGTATCGATACCGAAGGGTC
Found at i:9422792 original size:3 final size:3
Alignment explanation
Indices: 9422784--9422831 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
9422774 CATTTGCTTA
9422784 TAT TAT TATT TAT TAT TAT TAT TAT T-T TA- TAT TA- TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9422827 TAT TA
1 TAT TA
9422832 AATAATAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
2 6 0.15
3 32 0.78
4 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9422794 original size:16 final size:16
Alignment explanation
Indices: 9422784--9422831 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
9422774 CATTTGCTTA
9422784 TATTATTATTTATTAT
1 TATTATTATTTATTAT
9422800 TATTATTATTT-TATAT
1 TATTATTATTTAT-TAT
9422816 TA-TATTA-TTATTAT
1 TATTATTATTTATTAT
9422830 TA
1 TA
9422832 AATAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.23
15 7 0.23
16 16 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTATTTATTAT
Found at i:9422808 original size:24 final size:24
Alignment explanation
Indices: 9422781--9422831 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
9422771 TCTCATTTGC
9422781 TTATATTATTATT-TATTATTATTA
1 TTATATTA-TATTATATTATTATTA
*
9422805 TTATTTTATATTATATTATTATTA
1 TTATATTATATTATATTATTATTA
9422829 TTA
1 TTA
9422832 AATAATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTATATTATATTATATTATTATTA
Found at i:9424257 original size:20 final size:20
Alignment explanation
Indices: 9424232--9424272 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
9424222 TTTATTTTAA
9424232 TCATTATT-TGTAATATTATT
1 TCATTATTAT-TAATATTATT
*
9424252 TCATTATTATTATTATTATT
1 TCATTATTATTAATATTATT
9424272 T
1 T
9424273 ATATAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (20 bp):
TCATTATTATTAATATTATT
Found at i:9426725 original size:12 final size:13
Alignment explanation
Indices: 9426708--9426736 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
9426698 ACATTCACAT
9426708 ATTTACATTT-GC
1 ATTTACATTTAGC
9426720 ATTTACATTTAGC
1 ATTTACATTTAGC
9426733 ATTT
1 ATTT
9426737 TTTTCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (13 bp):
ATTTACATTTAGC
Found at i:9431082 original size:114 final size:114
Alignment explanation
Indices: 9430877--9431104 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
9430867 GTGCCACGTT
9430877 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
*
9430942 GTTTGGTATGAATCCCAAAACCAATCATTGGATTTGAAAGATGAATTTG
66 GTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTG
9430991 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
*
9431056 GTTTGGTATGAACCCCAAAACTAATCATTGGATTTGAAAGATGAATTTG
66 GTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTG
9431105 ATGATAGTCT
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (114 bp):
CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
GTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTG
Found at i:9433367 original size:53 final size:54
Alignment explanation
Indices: 9433309--9433415 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
9433299 TGTTGTCAAA
* * * *
9433309 TAGCATCTGTGCAGAAGCCACA-G-GAAGGATGAATGTGTTGTCAAATGTTTTAC
1 TAGCATCTGAGCAGAAACCACATGAGAAGG-TGAATGTATTGACAAATGTTTTAC
* *
9433362 TAGCATCTGAGCATAAACCACATGAGATGGTGAATGTATTGACAAATGTTTTAC
1 TAGCATCTGAGCAGAAACCACATGAGAAGGTGAATGTATTGACAAATGTTTTAC
9433416 GAACCAGTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 19 0.41
54 23 0.50
55 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (54 bp):
TAGCATCTGAGCAGAAACCACATGAGAAGGTGAATGTATTGACAAATGTTTTAC
Found at i:9434523 original size:112 final size:112
Alignment explanation
Indices: 9434252--9434872 Score: 1005
Period size: 112 Copynumber: 5.5 Consensus size: 112
9434242 CAACATTTCC
* *
9434252 AGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCT
1 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
** * * * ** * *
9434317 TGAATTCATCA-TTCGATGGATCAGCATTGCCAGGTCGAGTTCATAATG
66 CAAATCCATCACTT-GATGGATCAACATTTCCA-GAAGTGTTTATAATG
*
9434365 AGAAGAACTCATCTGAAGAAGGAAG-GAGAAGTTCATAATGAAAAGAACTTGTTCAACCTTTTGC
1 AGAAGAACTCATCTGAAGAAGGAAGAG-GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
9434429 TCAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
65 TCAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
*
9434477 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGCTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
1 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
9434542 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
66 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
*
9434589 AGAAGAACTCATCTGAAGAATGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
1 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
9434654 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
66 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
* *
9434701 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGCTCATAATGAGAAGAACTTGTTCAACCTTTTTCT
1 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
*
9434766 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTCATAATG
66 CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
* * * *
9434813 AGAAGAACTCATTTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAGCCTTT
1 AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
9434873 GTTTGATTCT
Statistics
Matches: 480, Mismatches: 25, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
111 38 0.08
112 354 0.74
113 86 0.18
114 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (112 bp):
AGAAGAACTCATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT
CAAATCCATCACTTGATGGATCAACATTTCCAGAAGTGTTTATAATG
Found at i:9435206 original size:3 final size:3
Alignment explanation
Indices: 9435194--9435310 Score: 195
Period size: 3 Copynumber: 39.7 Consensus size: 3
9435184 CATTTGCTTA
9435194 TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9435240 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
9435287 TAT TA- TGT TA- TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
9435311 AATAATAAAT
Statistics
Matches: 108, Mismatches: 2, Indels: 8
0.92 0.02 0.07
Matches are distributed among these distances:
2 5 0.05
3 100 0.93
4 3 0.03
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9436788 original size:3 final size:3
Alignment explanation
Indices: 9436775--9436840 Score: 66
Period size: 3 Copynumber: 22.3 Consensus size: 3
9436765 TTATTTGCAA
* *
9436775 TAT TAT T-T TAT TAT TAT TAT TAT TATT TAT TGCT T-T AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT
*
9436820 T-T CAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
9436841 TATATAAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
2 4 0.08
3 44 0.83
4 5 0.09
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9436866 original size:20 final size:18
Alignment explanation
Indices: 9436841--9436877 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
9436831 TATTATTATT
9436841 TATATA-AATAAATATATA
1 TATATATAATAAATA-ATA
9436859 TATATATAATAAATAATA
1 TATATATAATAAATAATA
9436877 T
1 T
9436878 TTGTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATATATAATAAATAATA
Found at i:9446892 original size:15 final size:14
Alignment explanation
Indices: 9446869--9446899 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
9446859 ATTAGAACAT
9446869 TTTATTTAATATTA
1 TTTATTTAATATTA
9446883 TTTATGTTAATATTA
1 TTTAT-TTAATATTA
9446898 TT
1 TT
9446900 ATTAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTATTTAATATTA
Found at i:9446990 original size:19 final size:19
Alignment explanation
Indices: 9446966--9447031 Score: 53
Period size: 22 Copynumber: 3.3 Consensus size: 19
9446956 TTTAAAATAA
9446966 AATTATTATAAATTATATT
1 AATTATTATAAATTATATT
* * *
9446985 AATTATTTATTAAAATAAGAAT
1 AATTA-TTA-T-AAATTATATT
9447007 AATATATTA-ATAATTATATT
1 AAT-TATTATA-AATTATATT
9447027 AATTA
1 AATTA
9447032 ATTACTTATG
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 8 0.22
20 12 0.33
21 1 0.03
22 13 0.36
23 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
AATTATTATAAATTATATT
Found at i:9447085 original size:15 final size:15
Alignment explanation
Indices: 9447065--9447095 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9447055 TGTTAAAATC
9447065 TTAAAATAAAATTAT
1 TTAAAATAAAATTAT
9447080 TTAAAATAAAATTAT
1 TTAAAATAAAATTAT
9447095 T
1 T
9447096 ATATTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAAAATAAAATTAT
Found at i:9448054 original size:31 final size:32
Alignment explanation
Indices: 9447982--9448054 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
9447972 TAATTAAAAA
*
9447982 TAAAAATAAATTTGAAAGTTAGAGTGTTTAAAT
1 TAAAAAT-AATTTGAAAGTTAGAGTATTTAAAT
**
9448015 TATGAATAATTTGAAAGTTA-AGTATTTAAAT
1 TAAAAATAATTTGAAAGTTAGAGTATTTAAAT
9448046 TAAAAATAA
1 TAAAAATAA
9448055 ATAAATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 17 0.49
32 13 0.37
33 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (32 bp):
TAAAAATAATTTGAAAGTTAGAGTATTTAAAT
Found at i:9449019 original size:43 final size:40
Alignment explanation
Indices: 9448959--9449093 Score: 153
Period size: 45 Copynumber: 3.1 Consensus size: 40
9448949 AAAATTGAAA
* * *
9448959 AAAAAATTAAGGTCTCAATTATAAAGGTAGAAATCGAGTTTG
1 AAAAAATTAGGGCCTCAATTATAAAGGTAG-AAT-GAGATTG
*
9449001 AAAAAATTAGGGGCCTCAATTATAAAGGTATAATGCAGATTG
1 AAAAAATTA-GGGCCTCAATTATAAAGGTAGAATG-AGATTG
9449043 AAAAAAAACTTATGGGCCTCAATTATAAAGGTAGAATTGAGATTG
1 --AAAAAA-TTA-GGGCCTCAATTATAAAGGTAGAA-TGAGATTG
9449088 AAAAAA
1 AAAAAA
9449094 CTTATTGAAC
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.01
42 17 0.21
43 24 0.30
44 6 0.07
45 31 0.38
46 2 0.02
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (40 bp):
AAAAAATTAGGGCCTCAATTATAAAGGTAGAATGAGATTG
Found at i:9449806 original size:26 final size:26
Alignment explanation
Indices: 9449777--9449864 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
9449767 ACAACTCAAA
9449777 CTTTATTGTATAGATATTATAATCAC
1 CTTTATTGTATAGATATTATAATCAC
* ** * * * * *
9449803 CTTTATCAGGCTAGCTGAATCTTATCCAAA
1 CTTTAT-TGTATAGAT-ATTATAAT-C-AC
9449833 CTTTATTGTATAGATATTATAATCAC
1 CTTTATTGTATAGATATTATAATCAC
9449859 CTTTAT
1 CTTTAT
9449865 CAGGCTAGCT
Statistics
Matches: 42, Mismatches: 16, Indels: 8
0.64 0.24 0.12
Matches are distributed among these distances:
26 13 0.31
27 6 0.14
28 10 0.24
29 6 0.14
30 7 0.17
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (26 bp):
CTTTATTGTATAGATATTATAATCAC
Found at i:9449859 original size:56 final size:56
Alignment explanation
Indices: 9449773--9449888 Score: 232
Period size: 56 Copynumber: 2.1 Consensus size: 56
9449763 AGAGACAACT
9449773 CAAACTTTATTGTATAGATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATC
1 CAAACTTTATTGTATAGATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATC
9449829 CAAACTTTATTGTATAGATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATC
1 CAAACTTTATTGTATAGATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATC
9449885 CAAA
1 CAAA
9449889 AAGTCGGGGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (56 bp):
CAAACTTTATTGTATAGATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATC
Found at i:9451251 original size:37 final size:37
Alignment explanation
Indices: 9451159--9451497 Score: 263
Period size: 37 Copynumber: 9.1 Consensus size: 37
9451149 TTTTTTAAAC
* * *
9451159 TATATACTATATAAATTTTC-AAAATGTTTTCAAAAC
1 TATATATTATATATATTTTCAAAAATGTTTTCAAAAT
9451195 TATATATTATATATTTATTTTCAAAAATGTTTTCAAAAT
1 TATATATTATATA--TATTTTCAAAAATGTTTTCAAAAT
* *
9451234 TATATATTATATATATTTTCAAAAACGTTTTCAAAAC
1 TATATATTATATATATTTTCAAAAATGTTTTCAAAAT
* * * *
9451271 TATATAATATATATATTATCCAAAACGTTTTC-AAAT
1 TATATATTATATATATTTTCAAAAATGTTTTCAAAAT
* * * *
9451307 TGTTTTTTCAAAAATATATATTTTCAAAAAT-TTTCCAAAA-
1 TATATATT-----ATATATATTTTCAAAAATGTTTTCAAAAT
9451347 TATATA--ATATATATTTTCAAAAATCGTTTTCAAAAT
1 TATATATTATATATATTTTCAAAAAT-GTTTTCAAAAT
* *
9451383 TATATA-TATAT-T-TTTTCAAAAATCGATTTTAAAAAA
1 TATATATTATATATATTTTCAAAAAT-G-TTTTCAAAAT
* * *
9451419 TATATA-TAT-TACATATTT-AAAACCAT-TTTCTAAAAAC
1 TATATATTATATATAT-TTTCAAAA--ATGTTT-TCAAAAT
* * *
9451456 TATATATTATATATTTTTTTAAAAATATTTTCAAAAAT
1 TATATATTATATATATTTTCAAAAATGTTTTC-AAAAT
9451494 TATA
1 TATA
9451498 CTATATTAAT
Statistics
Matches: 249, Mismatches: 29, Indels: 48
0.76 0.09 0.15
Matches are distributed among these distances:
33 18 0.07
35 22 0.09
36 46 0.18
37 75 0.30
38 26 0.10
39 37 0.15
40 7 0.03
41 18 0.07
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (37 bp):
TATATATTATATATATTTTCAAAAATGTTTTCAAAAT
Found at i:9451282 original size:76 final size:73
Alignment explanation
Indices: 9451159--9451491 Score: 267
Period size: 76 Copynumber: 4.5 Consensus size: 73
9451149 TTTTTTAAAC
* * *
9451159 TATATACTATATAAATTTTC-AAAATGTTTTCAAAACTATATATTATATATTTATTTTCAAAAAT
1 TATATATTATATATATTTTCAAAAACGTTTTCAAAACTATATA-TATATA--TATTTTCAAAAAT
9451223 GTTTTCAAAAT
63 GTTTTCAAAAT
* * *
9451234 TATATATTATATATATTTTCAAAAACGTTTTCAAAACTATATAATATATATATTATCCAAAACGT
1 TATATATTATATATATTTTCAAAAACGTTTTCAAAACTATAT-ATATATATATTTTCAAAAATGT
9451299 TTTC-AAAT
65 TTTCAAAAT
* * *
9451307 TGTTTTTTCAAAAATATATATTTTCAAAAA--TTTTCCAAAA-TATATA-ATATATATTTTCAAA
1 TATATATT-----ATATATATTTTCAAAAACGTTTT-CAAAACTATATATATATATATTTTCAAA
9451368 AATCGTTTTCAAAAT
60 AAT-GTTTTCAAAAT
* * *
9451383 TATATA-TATAT-T-TTTTCAAAAATCGATTTTAAAAAATATATATAT-TACATATTT-AAAACC
1 TATATATTATATATATTTTCAAAAA-CG-TTTTCAAAACTATATATATATATAT-TTTCAAAA--
* *
9451443 AT-TTTCTAAAAAC
61 ATGTTT-TCAAAAT
* * **
9451456 TATATATTATATATTTTTTTAAAAATATTTTCAAAA
1 TATATATTATATATATTTTCAAAAACGTTTTCAAAA
9451492 ATTATACTAT
Statistics
Matches: 212, Mismatches: 23, Indels: 47
0.75 0.08 0.17
Matches are distributed among these distances:
68 10 0.05
69 1 0.00
70 4 0.02
71 4 0.02
72 21 0.10
73 25 0.12
74 46 0.22
75 27 0.13
76 51 0.24
77 6 0.03
78 17 0.08
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (73 bp):
TATATATTATATATATTTTCAAAAACGTTTTCAAAACTATATATATATATATTTTCAAAAATGTT
TTCAAAAT
Found at i:9451361 original size:33 final size:33
Alignment explanation
Indices: 9451319--9451406 Score: 124
Period size: 35 Copynumber: 2.6 Consensus size: 33
9451309 TTTTTTCAAA
9451319 AATATATATTTTCAAAAAT-TTTCCAAAATATAT
1 AATATATATTTTCAAAAATCTTTCCAAAAT-TAT
*
9451352 AATATATATTTTCAAAAATCGTTTTCAAAATTAT
1 AATATATATTTTCAAAAATC-TTTCCAAAATTAT
*
9451386 ATATATATTTTTTCAAAAATC
1 A-ATATATATTTTCAAAAATC
9451407 GATTTTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
33 19 0.38
34 4 0.08
35 27 0.54
ACGTcount: A:0.45, C:0.09, G:0.01, T:0.44
Consensus pattern (33 bp):
AATATATATTTTCAAAAATCTTTCCAAAATTAT
Found at i:9457269 original size:2 final size:2
Alignment explanation
Indices: 9457239--9457296 Score: 80
Period size: 2 Copynumber: 29.0 Consensus size: 2
9457229 ATTTAAGTAT
* * * *
9457239 TA TA CA TA TA CA TA TA CA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9457281 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
9457297 CACTGAAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:9461783 original size:38 final size:39
Alignment explanation
Indices: 9461735--9461813 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 39
9461725 GGGTTTAGGG
*
9461735 TTTTTTAAGTGTGATATTCGGGTCGAGTCGGG-TCGGGT
1 TTTTTTAAGTGAGATATTCGGGTCGAGTCGGGTTCGGGT
* *
9461773 TTTTTTAAGTGAGATATTTGGGTCGGGTCGGGTTCGGGT
1 TTTTTTAAGTGAGATATTCGGGTCGAGTCGGGTTCGGGT
9461812 TT
1 TT
9461814 AGGGTGAACA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
38 29 0.78
39 8 0.22
ACGTcount: A:0.13, C:0.09, G:0.37, T:0.42
Consensus pattern (39 bp):
TTTTTTAAGTGAGATATTCGGGTCGAGTCGGGTTCGGGT
Found at i:9463819 original size:37 final size:37
Alignment explanation
Indices: 9463729--9463833 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
9463719 CCTTTTCGTC
*
9463729 CTACTAGGATTCAAACTCCTAAAAATAAGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
9463766 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
** * *
9463803 CTACTATTATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
9463834 CCACAAGCAT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:9464256 original size:30 final size:27
Alignment explanation
Indices: 9464222--9464352 Score: 74
Period size: 27 Copynumber: 4.7 Consensus size: 27
9464212 TTAATCCTTA
9464222 TTATTTATATGTATATATTATTATTATATT
1 TTATTTAT-T-TAT-TATTATTATTATATT
*
9464252 TTATTTATTTATTATTTTTATTAT-TT
1 TTATTTATTTATTATTATTATTATATT
* * *
9464278 TGTTTTTCATTTTTTGCGTTA-TATTATATT
1 T-TATTT-ATTTATT--ATTATTATTATATT
9464308 ATT-TTCCTA-TTATTATTATTATTATA-T
1 -TTATT--TATTTATTATTATTATTATATT
* * *
9464335 ATATATATTTATTTTTAT
1 TTATTTATTTATTATTAT
9464353 CTATGTTTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
25 2 0.03
26 13 0.16
27 20 0.25
28 16 0.20
29 13 0.16
30 14 0.17
31 2 0.03
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (27 bp):
TTATTTATTTATTATTATTATTATATT
Found at i:9464259 original size:17 final size:17
Alignment explanation
Indices: 9464219--9464273 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
9464209 AATTTAATCC
*
9464219 TTATTATTTATATGTATAT
1 TTATTA-TTATAT-TTTAT
9464238 ATTATTATTATATTTTAT
1 -TTATTATTATATTTTAT
9464256 TTATTTATTAT-TTTTAT
1 TTA-TTATTATATTTTAT
9464273 T
1 T
9464274 ATTTTGTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
17 10 0.30
18 11 0.33
19 6 0.18
20 6 0.18
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTATTATTATATTTTAT
Found at i:9464271 original size:9 final size:9
Alignment explanation
Indices: 9464237--9464278 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
9464227 TATATGTATA
*
9464237 TATTATTAT
1 TATTTTTAT
9464246 TATATTTTAT
1 TAT-TTTTAT
*
9464256 T-TATTTAT
1 TATTTTTAT
9464264 TATTTTTAT
1 TATTTTTAT
9464273 TATTTT
1 TATTTT
9464279 GTTTTTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 6 0.21
9 16 0.57
10 6 0.21
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTTTAT
Found at i:9464272 original size:24 final size:25
Alignment explanation
Indices: 9464219--9464278 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
9464209 AATTTAATCC
9464219 TTATTATTTATATGTATATATTATTA
1 TTATTATTT-TATGTATATATTATTA
* * *
9464245 TTA-TATTTTATTTATTTATTATTT
1 TTATTATTTTATGTATATATTATTA
9464269 TTATTATTTT
1 TTATTATTTT
9464279 GTTTTTCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 16 0.53
25 11 0.37
26 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
TTATTATTTTATGTATATATTATTA
Found at i:9464448 original size:26 final size:24
Alignment explanation
Indices: 9464419--9464500 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 24
9464409 TTCTTATTTA
9464419 TTTTATTTTATATTTCTATGATTACT
1 TTTTA-TTTATATTT-TATGATTACT
* *
9464445 TTTTAGTTAATATTATATGTATTA-T
1 TTTTA-TTTATATTTTATG-ATTACT
*
9464470 TTTTCATTTATTATTTTATTATTACT
1 TTTT-ATTTA-TATTTTATGATTACT
*
9464496 ATTTA
1 TTTTA
9464501 GTATTTATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
25 17 0.38
26 28 0.62
ACGTcount: A:0.27, C:0.05, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTATTTATATTTTATGATTACT
Found at i:9464699 original size:19 final size:19
Alignment explanation
Indices: 9464677--9464728 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
9464667 TTTATCTTCA
9464677 TTTATTTATTTTATTCAAT
1 TTTATTTATTTTATTCAAT
*
9464696 TTTATTT-TTTTCATCCAAT
1 TTTATTTATTTT-ATTCAAT
* *
9464715 TAT-TTTAGTTTATT
1 TTTATTTATTTTATT
9464729 ATTATTGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 9 0.33
19 18 0.67
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATTTATTTTATTCAAT
Found at i:9468739 original size:16 final size:16
Alignment explanation
Indices: 9468718--9468792 Score: 64
Period size: 16 Copynumber: 4.6 Consensus size: 16
9468708 AAAGGGCAAA
9468718 AACAAAAAAGAA-AAG
1 AACAAAAAAGAACAAG
*
9468733 AAGCAAAAAAGAAGAAG
1 AA-CAAAAAAGAACAAG
* *
9468750 AAAAAAAAAGAACAAA
1 AACAAAAAAGAACAAG
*
9468766 AATC-AAAAAGAAAAAGG
1 AA-CAAAAAAGAACAA-G
*
9468783 GACAAAAAAG
1 AACAAAAAAG
9468793 CACATGCAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
15 2 0.04
16 34 0.71
17 12 0.25
ACGTcount: A:0.76, C:0.07, G:0.16, T:0.01
Consensus pattern (16 bp):
AACAAAAAAGAACAAG
Done.