Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 46 of 73
Found at i:11001127 original size:29 final size:29
Alignment explanation
Indices: 11001072--11001126 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
11001062 AAATGTTCTG
*
11001072 TAAATAAATAAAAAATTAGATTTTTTTAT
1 TAAATAAATAAAAAATCAGATTTTTTTAT
11001101 TAAAT-AATAAAAAATCAGATTTTTTT
1 TAAATAAATAAAAAATCAGATTTTTTT
11001127 TGGTAAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (29 bp):
TAAATAAATAAAAAATCAGATTTTTTTAT
Found at i:11001133 original size:29 final size:29
Alignment explanation
Indices: 11001070--11001143 Score: 89
Period size: 28 Copynumber: 2.5 Consensus size: 29
11001060 TGAAATGTTC
*
11001070 TGTAAATAAATAAAAAATTAGATTTTTTTA
1 TGTAAAT-AATAAAAAATCAGATTTTTTTA
11001100 T-TAAATAATAAAAAATCAGATTTTTTT-
1 TGTAAATAATAAAAAATCAGATTTTTTTA
*
11001127 TGGTAAAAGAATAAAAA
1 T-GT-AAATAATAAAAA
11001144 GAATTTGAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 1 0.03
28 20 0.51
29 6 0.15
30 12 0.31
ACGTcount: A:0.53, C:0.01, G:0.08, T:0.38
Consensus pattern (29 bp):
TGTAAATAATAAAAAATCAGATTTTTTTA
Found at i:11009375 original size:42 final size:42
Alignment explanation
Indices: 11009328--11009420 Score: 186
Period size: 42 Copynumber: 2.2 Consensus size: 42
11009318 AATTAATTAT
11009328 TTTTCTTTTGTTAAGTTTTCAAGTTTAACTTTCAAATCAAAA
1 TTTTCTTTTGTTAAGTTTTCAAGTTTAACTTTCAAATCAAAA
11009370 TTTTCTTTTGTTAAGTTTTCAAGTTTAACTTTCAAATCAAAA
1 TTTTCTTTTGTTAAGTTTTCAAGTTTAACTTTCAAATCAAAA
11009412 TTTTCTTTT
1 TTTTCTTTT
11009421 TCTAAATCAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.28, C:0.12, G:0.06, T:0.54
Consensus pattern (42 bp):
TTTTCTTTTGTTAAGTTTTCAAGTTTAACTTTCAAATCAAAA
Found at i:11009498 original size:20 final size:19
Alignment explanation
Indices: 11009461--11009508 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
11009451 TCTAAATCAT
*
11009461 TTTTCAAAATATCATTTTG
1 TTTTCAAAATAACATTTTG
11009480 ATTTTCAAAATCAAC-TTTTG
1 -TTTTCAAAAT-AACATTTTG
*
11009500 CTTTCAAAA
1 TTTTCAAAA
11009509 CCAAATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.32
20 15 0.60
21 2 0.08
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (19 bp):
TTTTCAAAATAACATTTTG
Found at i:11013857 original size:30 final size:30
Alignment explanation
Indices: 11013817--11013873 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
11013807 GGATATTGCA
* *
11013817 CTTTTGGTCCCCAAATTTTTTAAAATTACC
1 CTTTTAGTCCCCAAACTTTTTAAAATTACC
* *
11013847 CTTTTAGTCCCTAAACTTTTTCAAATT
1 CTTTTAGTCCCCAAACTTTTTAAAATT
11013874 GTATACTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.46
Consensus pattern (30 bp):
CTTTTAGTCCCCAAACTTTTTAAAATTACC
Found at i:11018746 original size:2 final size:2
Alignment explanation
Indices: 11018739--11018767 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11018729 ATTTACATAA
11018739 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11018768 CTTGTTCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11020120 original size:133 final size:132
Alignment explanation
Indices: 11019850--11020107 Score: 401
Period size: 133 Copynumber: 1.9 Consensus size: 132
11019840 CCCTCTACTG
11019850 TTTTTATTCTTGAAGCACATACACATAAAAGAAAACGAAAGAAAGGAAAATATTCCAATGAACCC
1 TTTTTATTCTTGAAGCACATACACATAAAAGAAAACGAAAGAAAGGAAAATATTCCAATGAACCC
* **** * **
11019915 TTTTTTATTGCATATATTTCGAAAATCTGGAGGGAGCCTCGGTTTCTTCTCTCAATTTCCCTCTA
66 TTTTTTATTGCATATATTTCGAAAATCTGGAGGGAGCCTCGGTTACAAAGCT-AATTACAATCTA
**
11019980 CTG
130 CCC
11019983 TTTTTATTCTTGAAGCACATACACATAAAAGAAAACGAAAGAAAGGAAAATATTCCAATGAACCC
1 TTTTTATTCTTGAAGCACATACACATAAAAGAAAACGAAAGAAAGGAAAATATTCCAATGAA-CC
11020048 CTTTTTTATTGCATATATTTCGAAAATCTGGAGGGAGCCTCGGTTACAAAGCT-ATTACAA
65 CTTTTTTATTGCATATATTTCGAAAATCTGGAGGGAGCCTCGGTTACAAAGCTAATTACAA
11020108 AATGTCCCTT
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
132 4 0.03
133 62 0.53
134 50 0.43
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (132 bp):
TTTTTATTCTTGAAGCACATACACATAAAAGAAAACGAAAGAAAGGAAAATATTCCAATGAACCC
TTTTTTATTGCATATATTTCGAAAATCTGGAGGGAGCCTCGGTTACAAAGCTAATTACAATCTAC
CC
Found at i:11020509 original size:3 final size:3
Alignment explanation
Indices: 11020469--11020523 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
11020459 CCTGCAACAG
* * * *
11020469 TAA TAAA TAA TAT TAA TAA AAA TAA CAA TAA TAT TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
11020516 TAA TAA TA
1 TAA TAA TA
11020524 TTTTTTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
3 36 0.86
4 6 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:11023812 original size:18 final size:18
Alignment explanation
Indices: 11023788--11023830 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
11023778 ATTTGCGCAT
*
11023788 AAAATTATTAAA-AATAT
1 AAAATTATTAAATAATAG
11023805 ATAAATTA-TAAATAATAG
1 A-AAATTATTAAATAATAG
11023823 AAAATTAT
1 AAAATTAT
11023831 ATTTTCTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATTATTAAATAATAG
Found at i:11042581 original size:61 final size:60
Alignment explanation
Indices: 11042431--11042584 Score: 161
Period size: 60 Copynumber: 2.5 Consensus size: 60
11042421 GCATCATATG
* * * *
11042431 TCCCGAAACTATAACCCTCTTTTTAAATTAGTCTTTAAACTTTTGAATATTTCAATTTCA
1 TCCCTAAACTATAACCCTCTTTATAAATTAGTCATTAAACTTTTGAACATTTCAATTTCA
* ** * *
11042491 T-CCTCAAACTATGAGTCTCATTATAAATTAGTCATTAAACTTTTTAACA-TTCTAATTTTCA
1 TCCCT-AAACTATAACCCTCTTTATAAATTAGTCATTAAACTTTTGAACATTTC-AA-TTTCA
*
11042552 TCCCTAAACTATAACCCT-TTTCCTAAATTAGTC
1 TCCCTAAACTATAACCCTCTTT-ATAAATTAGTC
11042585 CCCAAAATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
59 5 0.07
60 41 0.55
61 26 0.35
62 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (60 bp):
TCCCTAAACTATAACCCTCTTTATAAATTAGTCATTAAACTTTTGAACATTTCAATTTCA
Found at i:11042840 original size:61 final size:61
Alignment explanation
Indices: 11042737--11042872 Score: 157
Period size: 61 Copynumber: 2.2 Consensus size: 61
11042727 ATGCGTATGA
* * ** *
11042737 TTTG-GGATGAAATTGGAATTTTCAAAAAGTTTGGGGATTAATTTAAAATAAAAATCATAG
1 TTTGAGGATGAAATTGAAATGTTCAAAAAGTTTGAAGACTAATTTAAAATAAAAATCATAG
* * *** *
11042797 TTTGAGGATGAAGTTGAAATGTTCAAAAAGTTTGAAGACTAATTTAGAATGGTAGTCATAG
1 TTTGAGGATGAAATTGAAATGTTCAAAAAGTTTGAAGACTAATTTAAAATAAAAATCATAG
*
11042858 TTTAAGGATGAAATT
1 TTTGAGGATGAAATT
11042873 TTAGGGAGCA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
60 4 0.06
61 58 0.94
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.35
Consensus pattern (61 bp):
TTTGAGGATGAAATTGAAATGTTCAAAAAGTTTGAAGACTAATTTAAAATAAAAATCATAG
Found at i:11043652 original size:20 final size:20
Alignment explanation
Indices: 11043627--11043666 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11043617 TAAAGTGCCT
11043627 AAAAATAACAAAACCAGTAG
1 AAAAATAACAAAACCAGTAG
* *
11043647 AAAAATAGCAAAACCGGTAG
1 AAAAATAACAAAACCAGTAG
11043667 CGTTTTACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.10
Consensus pattern (20 bp):
AAAAATAACAAAACCAGTAG
Found at i:11043841 original size:10 final size:10
Alignment explanation
Indices: 11043826--11043850 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
11043816 TTAATTAATG
11043826 TATTTATTTT
1 TATTTATTTT
11043836 TATTTATTTT
1 TATTTATTTT
11043846 TATTT
1 TATTT
11043851 TAGGGTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TATTTATTTT
Found at i:11050843 original size:21 final size:20
Alignment explanation
Indices: 11050819--11050871 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
11050809 ACTTTACATA
11050819 AATTTTAATTAATTTCAAATC
1 AATTTTAATTAATTT-AAATC
* *
11050840 AATTTTTTATT-ATTTACATC
1 AA-TTTTAATTAATTTAAATC
11050860 ATATTTTAATTA
1 A-ATTTTAATTA
11050872 CAATCTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 12 0.46
21 7 0.27
22 7 0.27
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (20 bp):
AATTTTAATTAATTTAAATC
Found at i:11051092 original size:21 final size:20
Alignment explanation
Indices: 11051058--11051096 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
11051048 ATTAATTATT
11051058 TAAAAAATTAAATAAAAATA
1 TAAAAAATTAAATAAAAATA
*
11051078 TAAAAACATTTAATAAAAA
1 TAAAAA-ATTAAATAAAAA
11051097 ACTGTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAAAAATTAAATAAAAATA
Found at i:11054494 original size:24 final size:23
Alignment explanation
Indices: 11054467--11054522 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
11054457 AACCATAAGG
*
11054467 AACGTGTCACAAGAGCAGATAAAA
1 AACGTGTCACAAGAACAGA-AAAA
* *
11054491 AACGTGCCACAAGAACATAAAAA
1 AACGTGTCACAAGAACAGAAAAA
*
11054514 AATGTGTCA
1 AACGTGTCA
11054523 TAAGGACAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.14
Consensus pattern (23 bp):
AACGTGTCACAAGAACAGAAAAA
Found at i:11059402 original size:19 final size:19
Alignment explanation
Indices: 11059371--11059419 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
11059361 AATAAAAAGA
11059371 AATAAAT-AAAAAGAATA-
1 AATAAATAAAAAAGAATAG
*
11059388 ATTAAATTAAAAAAGAATAG
1 AATAAA-TAAAAAAGAATAG
11059408 AATAAATAAAAA
1 AATAAATAAAAA
11059420 TTTCAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 16 0.59
20 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.20
Consensus pattern (19 bp):
AATAAATAAAAAAGAATAG
Found at i:11059535 original size:22 final size:20
Alignment explanation
Indices: 11059504--11059563 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 20
11059494 AAGTTAGATT
* *
11059504 TAAATGAAATAACAATTAAGAA
1 TAAAT-AAATAA-AATGAACAA
11059526 TAAAATAAATTAAAATGAACAA
1 T-AAATAAA-TAAAATGAACAA
*
11059548 TAAATAAATGAAATGA
1 TAAATAAATAAAATGA
11059564 TAAAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 7 0.21
21 7 0.21
22 12 0.36
23 7 0.21
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.23
Consensus pattern (20 bp):
TAAATAAATAAAATGAACAA
Found at i:11059587 original size:19 final size:19
Alignment explanation
Indices: 11059527--11059581 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
11059517 AATTAAGAAT
*
11059527 AAAATAAATTAAAATGA-ACA
1 AAAATAAA-TGAAATGATA-A
11059547 ATAAATAAATGAAATGATAA
1 A-AAATAAATGAAATGATAA
11059567 AAAATAAGATGAAAT
1 AAAATAA-ATGAAAT
11059582 TTAAAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 6 0.19
20 17 0.55
21 8 0.26
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (19 bp):
AAAATAAATGAAATGATAA
Found at i:11059745 original size:187 final size:190
Alignment explanation
Indices: 11059527--11059906 Score: 739
Period size: 187 Copynumber: 2.0 Consensus size: 190
11059517 AATTAAGAAT
11059527 AAAATAAATTAAAATGAACAATAAATAAATGAAATGATAAAAAATAAGATGAAATTTAAAATTTA
1 AAAATAAATTAAAATGAACAATAAATAAATGAAATGATAAAAAATAAGATGAAATTTAAAATTTA
11059592 ATATATAATATTAAAGAAATAAAATTGCT-AAAATAACCAAAATAAAAAAT-ATGAGAATTAGAA
66 ATATATAATATTAAAGAAATAAAATTGCTAAAAATAACCAAAATAAAAAATAATGAGAATTAGAA
11059655 GACTACAATGGAAAGAAATTAAAGGACGAGGTCTAGTGATTGAACTGT-AAAATACGAAA
131 GACTACAATGGAAAGAAATTAAAGGACGAGGTCTAGTGATTGAACTGTAAAAATACGAAA
11059714 AAAATAAATTAAAATGAACAATAAATAAATGAAATGATAAAAAATAAGATGAAATTTAAAATTTA
1 AAAATAAATTAAAATGAACAATAAATAAATGAAATGATAAAAAATAAGATGAAATTTAAAATTTA
11059779 ATATATAATATTAAAGAAATAAAATTGCTAAAAATAACCAAAATAAAAAATAATGAGAATTAGAA
66 ATATATAATATTAAAGAAATAAAATTGCTAAAAATAACCAAAATAAAAAATAATGAGAATTAGAA
11059844 GACTACAATGGAAAGAAATTAAAGGACGAGGTCTAGTGATTGAACTGTAAAAATACGAAA
131 GACTACAATGGAAAGAAATTAAAGGACGAGGTCTAGTGATTGAACTGTAAAAATACGAAA
11059904 AAA
1 AAA
11059907 GGTTTGAGGA
Statistics
Matches: 190, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
187 94 0.49
188 21 0.11
189 61 0.32
190 14 0.07
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (190 bp):
AAAATAAATTAAAATGAACAATAAATAAATGAAATGATAAAAAATAAGATGAAATTTAAAATTTA
ATATATAATATTAAAGAAATAAAATTGCTAAAAATAACCAAAATAAAAAATAATGAGAATTAGAA
GACTACAATGGAAAGAAATTAAAGGACGAGGTCTAGTGATTGAACTGTAAAAATACGAAA
Found at i:11059774 original size:19 final size:19
Alignment explanation
Indices: 11059712--11059768 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
11059702 TAAAATACGA
*
11059712 AAAAAATAAATTAAAATGA-
1 AAAAAATAAA-TGAAATGAT
11059731 ACAATAAATAAATGAAATGAT
1 A-AA-AAATAAATGAAATGAT
11059752 AAAAAATAAGATGAAAT
1 AAAAAATAA-ATGAAAT
11059769 TTAAAATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 7 0.21
20 18 0.55
21 8 0.24
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (19 bp):
AAAAAATAAATGAAATGAT
Found at i:11059906 original size:94 final size:94
Alignment explanation
Indices: 11059621--11059906 Score: 219
Period size: 94 Copynumber: 3.0 Consensus size: 94
11059611 TAAAATTGCT
11059621 AAAATAACCAAAATAAAAAAT-ATGAGAATTAGAAGACTACAATGGAAAGAAATTAAAGGACGAG
1 AAAATAACCAAAATAAAAAATAATGAGAATTAGAAGACTACAATGGAAAGAAATTAAAGGACGAG
11059685 GTCTAGTGATTGAACTGT-AAAATACGAAA
66 GTCTAGTGATTGAACTGTAAAAATACG-AA
** * * * * *** *
11059714 AAAATAAATTAAAATGAACAATAAAT-A-AATGA-AATGA-TAAAAAATAAGATGAAATTTAAAA
1 AAAAT-AACCAAAATAAAAAAT-AATGAGAATTAGAA-GACTACAATGGAA-A-GAAA-TTAAAG
**** ** * * * *** * * *
11059775 TTTAATATATAAT-ATTAAAGAAATAAAATTGC-TA
60 GACGAGGTCTAGTGATTGAA-CTGTAAAAATACGAA
11059809 AAAATAACCAAAATAAAAAATAATGAGAATTAGAAGACTACAATGGAAAGAAATTAAAGGACGAG
1 AAAATAACCAAAATAAAAAATAATGAGAATTAGAAGACTACAATGGAAAGAAATTAAAGGACGAG
11059874 GTCTAGTGATTGAACTGTAAAAATACGAA
66 GTCTAGTGATTGAACTGTAAAAATACGAA
11059903 AAAA
1 AAAA
11059907 GGTTTGAGGA
Statistics
Matches: 128, Mismatches: 50, Indels: 29
0.62 0.24 0.14
Matches are distributed among these distances:
93 33 0.26
94 46 0.36
95 23 0.18
96 21 0.16
97 5 0.04
ACGTcount: A:0.57, C:0.06, G:0.14, T:0.22
Consensus pattern (94 bp):
AAAATAACCAAAATAAAAAATAATGAGAATTAGAAGACTACAATGGAAAGAAATTAAAGGACGAG
GTCTAGTGATTGAACTGTAAAAATACGAA
Found at i:11066825 original size:87 final size:88
Alignment explanation
Indices: 11066678--11066850 Score: 303
Period size: 87 Copynumber: 2.0 Consensus size: 88
11066668 CCTAACACAC
*
11066678 CCTTTTATAGCCAAGTTACCCTAATCATATTAGAGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGAGATTTTATTATTTCAAATTAATTAAATCTAT
*
11066743 ATTTAATTAATTGGAATTAAAAT
66 ATTTAATTAATTGAAATTAAAAT
* *
11066766 CCTTTTATATCCAAGTTACCCT-ATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGAGATTTTATTATTTCAAATTAATTAAATCTAT
11066830 ATTTAATTAATTGAAATTAAA
66 ATTTAATTAATTGAAATTAAA
11066851 TATTCAGGAT
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 60 0.74
88 21 0.26
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.45
Consensus pattern (88 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGAGATTTTATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGAAATTAAAAT
Found at i:11071956 original size:85 final size:84
Alignment explanation
Indices: 11071791--11072114 Score: 400
Period size: 85 Copynumber: 3.8 Consensus size: 84
11071781 TCCCATCCTA
* * * * *
11071791 TTACAGTATAGCTCAAGGTGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTTA
1 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCA
*
11071856 GCTTAAGGACATATCAAAT
66 GCTCAAGGACATATCAAAT
* * * *
11071875 TTACAGCATAACTCAAGGCAAGAAGGGTTATCTGTCAACCAAAATCTTCGAGTTTGATAACATTC
1 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAA-CAAAACCTTCGAGTTCGATTACATTC
11071940 AGCTCAAGGACATATCAAAT
65 AGCTCAAGGACATATCAAAT
* * * * * *
11071960 TTACAACATAACTCAAGGGGAGAAGGGTTATCTATCAATAAAAACCTTTGAGTTCGATTCCATTC
1 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAA-CAAAACCTTCGAGTTCGATTACATTC
*
11072025 AGCTCAAGGGCATAAT-AAAT
65 AGCTCAAGGACAT-ATCAAAT
* * * *
11072045 TTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAATGAAAACTTTCAAGTTCGATCT-CATT
1 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAA-CAAAACCTTCGAGTTCGAT-TACATT
11072109 CAGCTC
64 CAGCTC
11072115 GAGGGCCTAT
Statistics
Matches: 207, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
84 33 0.16
85 171 0.83
86 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (84 bp):
TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCA
GCTCAAGGACATATCAAAT
Found at i:11074453 original size:14 final size:14
Alignment explanation
Indices: 11074430--11074463 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
11074420 TTTCCTAGAA
11074430 TTTATT-TTTTATT
1 TTTATTATTTTATT
11074443 TTTATTATTTTATT
1 TTTATTATTTTATT
*
11074457 TATATTA
1 TTTATTA
11074464 ATAAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTATTTTATT
Found at i:11078315 original size:19 final size:19
Alignment explanation
Indices: 11078287--11078332 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
11078277 CTCCTGATCA
*
11078287 GAATGCCCCATTACACACC
1 GAATGTCCCATTACACACC
11078306 GAATGTCCCATTACACACC
1 GAATGTCCCATTACACACC
11078325 GAATGTCC
1 GAATGTCC
11078333 ATGCCCCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.30, C:0.37, G:0.13, T:0.20
Consensus pattern (19 bp):
GAATGTCCCATTACACACC
Found at i:11083394 original size:44 final size:44
Alignment explanation
Indices: 11083346--11083436 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 44
11083336 AGTGTTATTA
* * *
11083346 GGATGAATCCCCTTCGCGAGTTTAAGTCGGGTGAAACATTCTTC
1 GGATGAATCACCTTCGCGAGTTTAAGCCAGGTGAAACATTCTTC
* * * *
11083390 GGATGACTTACCTTCGTGGGTTTAAGCCAGGTGAAACATTCTTC
1 GGATGAATCACCTTCGCGAGTTTAAGCCAGGTGAAACATTCTTC
11083434 GGA
1 GGA
11083437 CCGAATATCC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (44 bp):
GGATGAATCACCTTCGCGAGTTTAAGCCAGGTGAAACATTCTTC
Found at i:11089600 original size:26 final size:26
Alignment explanation
Indices: 11089552--11089607 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
11089542 AATGATTCAA
** *
11089552 GAATATCCCCAAACTCAGGAATGATT
1 GAATATCCCCAAACTCAAAAATGACT
* *
11089578 GAATATCCTCAAGCTCAAAAATGACT
1 GAATATCCCCAAACTCAAAAATGACT
11089604 GAAT
1 GAAT
11089608 TAATATTGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.23
Consensus pattern (26 bp):
GAATATCCCCAAACTCAAAAATGACT
Found at i:11090648 original size:24 final size:24
Alignment explanation
Indices: 11090620--11090687 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
11090610 TTTTATTTGA
*
11090620 ATTCTGTTATGATACCTGACATGG
1 ATTCTATTATGATACCTGACATGG
* * * *
11090644 TTTCTATTATAATACATGACCTGG
1 ATTCTATTATGATACCTGACATGG
* * *
11090668 ATTCTTTTCTGATATCTGAC
1 ATTCTATTATGATACCTGAC
11090688 CTGAATTATG
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43
Consensus pattern (24 bp):
ATTCTATTATGATACCTGACATGG
Found at i:11094875 original size:24 final size:24
Alignment explanation
Indices: 11094848--11094928 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
11094838 ATTTGAATTC
**
11094848 TGTTATGATACCTGATGTGGATTA
1 TGTTATGATACCTGACCTGGATTA
* * * *
11094872 TGTTCTAATACCTAACCTGGATTC
1 TGTTATGATACCTGACCTGGATTA
* *
11094896 TGTTATGATATCTGACCTGAATTA
1 TGTTATGATACCTGACCTGGATTA
*
11094920 TGTTTTGAT
1 TGTTATGAT
11094929 TTTTGATATA
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.43
Consensus pattern (24 bp):
TGTTATGATACCTGACCTGGATTA
Found at i:11097977 original size:82 final size:82
Alignment explanation
Indices: 11097865--11098151 Score: 291
Period size: 82 Copynumber: 3.5 Consensus size: 82
11097855 CATATCACGA
* * * *
11097865 CGTTTTTTAAACAAACGCCACAATAGAGTGGTAATTTAGCGGCGTTTATAGCTA-AAACGCCGCA
1 CGTTTGTTCAACAAATGCCACAATAGAGTAGTAATTTAGCGGCGTTTATA-C-ACAAACGCCGCA
11097929 ATAGATATGTTTATAGTGG
64 ATAGATATGTTTATAGTGG
* * * * *
11097948 CGTTT-TTTAACAAATGCCGCAATAGAGTGGTAATTTAGTGGCGTTTTTACACAAACGCCGCAAT
1 CGTTTGTTCAACAAATGCCACAATAGAGTAGTAATTTAGCGGCGTTTATACACAAACGCCGCAAT
* *
11098012 A-ATGTTGTTTATAGTGA
66 AGAT-ATGTTTATAGTGG
* * * *
11098029 CGTTTGTTCAACAAA---CACAATAGAGAAGTAATTTCGCGGCGTTTATCAAACAAACGCCGTAA
1 CGTTTGTTCAACAAATGCCACAATAGAGTAGTAATTTAGCGGCGTTTAT-ACACAAACGCCGCAA
*
11098091 TAG-TATTGTTTATAATGG
65 TAGATA-TGTTTATAGTGG
* * * * *
11098109 CGTTTGTGCAAAAAATGCCGCAATAGAGTAATAATATAGCGGC
1 CGTTTGTTCAACAAATGCCACAATAGAGTAGTAATTTAGCGGC
11098152 ATTTGTCCTA
Statistics
Matches: 169, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
79 25 0.15
80 42 0.25
81 30 0.18
82 47 0.28
83 25 0.15
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (82 bp):
CGTTTGTTCAACAAATGCCACAATAGAGTAGTAATTTAGCGGCGTTTATACACAAACGCCGCAAT
AGATATGTTTATAGTGG
Found at i:11097987 original size:41 final size:40
Alignment explanation
Indices: 11097868--11098012 Score: 152
Period size: 41 Copynumber: 3.5 Consensus size: 40
11097858 ATCACGACGT
* *
11097868 TTTTTAAACAAACGCCACAATAGAGTGGTAATTTAGCGGCG
1 TTTTT-AACAAACGCCGCAATAGAGTGGTAATTTAGTGGCG
* * *
11097909 TTTATAGCTAAAACGCCGCAATAGA-TATGT--TTATAGTGGCG
1 TTTTTAAC--AAACGCCGCAATAGAGT-GGTAATT-TAGTGGCG
*
11097950 TTTTTTAACAAATGCCGCAATAGAGTGGTAATTTAGTGGCG
1 -TTTTTAACAAACGCCGCAATAGAGTGGTAATTTAGTGGCG
11097991 TTTTTACACAAACGCCGCAATA
1 TTTTTA-ACAAACGCCGCAATA
11098013 ATGTTGTTTA
Statistics
Matches: 85, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
40 26 0.31
41 35 0.41
42 24 0.28
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (40 bp):
TTTTTAACAAACGCCGCAATAGAGTGGTAATTTAGTGGCG
Found at i:11098043 original size:41 final size:40
Alignment explanation
Indices: 11097919--11098044 Score: 134
Period size: 41 Copynumber: 3.1 Consensus size: 40
11097909 TTTATAGCTA
*
11097919 AAACGCCGCAATAGAT-ATGTTTATAGTGGCGTTTTTTAAC
1 AAACGCCGCAATAGATGTTGTTTATAGTGGCG-TTTTTAAC
* *
11097959 AAATGCCGCAATAGA-GTGGTAATT-TAGTGGCGTTTTTACAC
1 AAACGCCGCAATAGATGTTGT--TTATAGTGGCGTTTTTA-AC
*
11098000 AAACGCCGCAATA-ATGTTGTTTATAGTGACGTTTGTTCAAC
1 AAACGCCGCAATAGATGTTGTTTATAGTGGCGTTT-TT-AAC
11098041 AAAC
1 AAAC
11098045 ACAATAGAGA
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
39 2 0.03
40 33 0.46
41 34 0.47
42 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (40 bp):
AAACGCCGCAATAGATGTTGTTTATAGTGGCGTTTTTAAC
Found at i:11098139 original size:80 final size:79
Alignment explanation
Indices: 11097919--11098140 Score: 220
Period size: 80 Copynumber: 2.8 Consensus size: 79
11097909 TTTATAGCTA
*
11097919 AAACGCCGCAATAG-ATATGTTTATAGTGGCGTTT-TTTAACAAATGCCGCAATAGAGTGGTAAT
1 AAACGCCGCAATAGTAT-TGTTTATAGTGGCGTTTGTTCAACAAATGCCGCAATAGA---GTAAT
* * *
11097982 TTAGTGGCGTTTTTACAC
62 TTAGCGGCGTTTTCAAAC
* * * *
11098000 AAACGCCGCAATAATGTTGTTTATAGTGACGTTTGTTCAACAAA---CACAATAGAGAAGTAATT
1 AAACGCCGCAATAGTATTGTTTATAGTGGCGTTTGTTCAACAAATGCCGCAAT--AG-AGTAATT
*
11098062 TCGCGGCGTTTATCAAAC
63 TAGCGGCGTTT-TCAAAC
* * * *
11098080 AAACGCCGTAATAGTATTGTTTATAATGGCGTTTGTGCAAAAAATGCCGCAATAGAGTAAT
1 AAACGCCGCAATAGTATTGTTTATAGTGGCGTTTGTTCAACAAATGCCGCAATAGAGTAAT
11098141 AATATAGCGG
Statistics
Matches: 115, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
79 20 0.17
80 47 0.41
81 33 0.29
82 10 0.09
83 5 0.04
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (79 bp):
AAACGCCGCAATAGTATTGTTTATAGTGGCGTTTGTTCAACAAATGCCGCAATAGAGTAATTTAG
CGGCGTTTTCAAAC
Found at i:11100174 original size:18 final size:18
Alignment explanation
Indices: 11100151--11100186 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
11100141 CCCAATCAGT
11100151 TGCTCAGTTTCCTCCATC
1 TGCTCAGTTTCCTCCATC
11100169 TGCTCAGTTTCCTCCATC
1 TGCTCAGTTTCCTCCATC
11100187 AACCCTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.39, G:0.11, T:0.39
Consensus pattern (18 bp):
TGCTCAGTTTCCTCCATC
Found at i:11104094 original size:44 final size:44
Alignment explanation
Indices: 11103953--11104095 Score: 178
Period size: 44 Copynumber: 3.2 Consensus size: 44
11103943 CACTAACTTT
* * * *
11103953 TAGCGGCGTTTGTATCCTAAAAATGCCACTATATAGCAGACCTA
1 TAGCAGCGTTTGTATCCTAAAAACGCCGCTATATACCAGACCTA
* * * *
11103997 TCGCAACGTTTGTATCCTAAAAACGTCGCTATATACCTGACCTA
1 TAGCAGCGTTTGTATCCTAAAAACGCCGCTATATACCAGACCTA
* *
11104041 TAGCAGCGTTTGTATCCTAAAAACGCCGTTAAATACCAGACCTA
1 TAGCAGCGTTTGTATCCTAAAAACGCCGCTATATACCAGACCTA
* *
11104085 TTGCGGCGTTT
1 TAGCAGCGTTT
11104096 TCATAAAAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
TAGCAGCGTTTGTATCCTAAAAACGCCGCTATATACCAGACCTA
Found at i:11104095 original size:88 final size:86
Alignment explanation
Indices: 11103907--11104095 Score: 207
Period size: 88 Copynumber: 2.2 Consensus size: 86
11103897 AATATTAACT
* * * * *
11103907 CCTATTGCGGCGTTTGTATCAAAAAATGCCGCTATGCACTAACTTTTAGCGGCGTTTGTATCCTA
1 CCTATTGCGGCGTTTGTATCAAAAAACGCCGCTATACACTAACCTATAGCAGCGTTTGTATCCTA
* * *
11103972 AAAATGCCACTATATAGCAGA
66 AAAACGCCACTAAATACCAGA
* ** * * * *
11103993 CCTATCGCAACGTTTGTATCCTAAAAACGTCGCTATATACCTGACCTATAGCAGCGTTTGTATCC
1 CCTATTGCGGCGTTTGTAT-CAAAAAACGCCGCTATACA-CTAACCTATAGCAGCGTTTGTATCC
**
11104058 TAAAAACGCCGTTAAATACCAGA
64 TAAAAACGCCACTAAATACCAGA
11104081 CCTATTGCGGCGTTT
1 CCTATTGCGGCGTTT
11104096 TCATAAAAAA
Statistics
Matches: 81, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
86 16 0.20
87 14 0.17
88 51 0.63
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (86 bp):
CCTATTGCGGCGTTTGTATCAAAAAACGCCGCTATACACTAACCTATAGCAGCGTTTGTATCCTA
AAAACGCCACTAAATACCAGA
Found at i:11104194 original size:43 final size:42
Alignment explanation
Indices: 11104059--11104227 Score: 160
Period size: 43 Copynumber: 4.0 Consensus size: 42
11104049 TTTGTATCCT
* * *
11104059 AAAAACGCCGTTAAATA-CCAGACCTATTGCGGCGTTTTCATAA
1 AAAAACGCCGCTAAATATCGACACCTATTGCGGCGTTTT--TAA
** * * * * * *
11104102 AAAAATACCGCGAAATATCAACACTTATTGCGGCATTTGTGAT
1 AAAAACGCCGCTAAATATCGACACCTATTGCGGCGTTT-TTAA
*
11104145 AAAAACGCCGCTAAATATTGACACCTATTGCGGCGTTTTTAA
1 AAAAACGCCGCTAAATATCGACACCTATTGCGGCGTTTTTAA
* **
11104187 GACAAACGCCGCTAAATATCGGTACCTATTGCGGCGTTTTT
1 -AAAAACGCCGCTAAATATCGACACCTATTGCGGCGTTTTT
11104228 GGTTAACAAA
Statistics
Matches: 100, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
42 2 0.02
43 81 0.81
44 16 0.16
45 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
AAAAACGCCGCTAAATATCGACACCTATTGCGGCGTTTTTAA
Found at i:11104899 original size:46 final size:46
Alignment explanation
Indices: 11104849--11104941 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
11104839 GGGTTCTTGT
*
11104849 AAGTAATTTATGCTAAAAACATGTTCTGTTACATGTTTTGTTTAAA
1 AAGTAATTTATGCTAAAAACATGTTCTGTTACATCTTTTGTTTAAA
* *
11104895 AAGTAATTTATGCTAAAAACATGTTTTGTTACGTCTTTTGTTTAAA
1 AAGTAATTTATGCTAAAAACATGTTCTGTTACATCTTTTGTTTAAA
11104941 A
1 A
11104942 TCTTGTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (46 bp):
AAGTAATTTATGCTAAAAACATGTTCTGTTACATCTTTTGTTTAAA
Found at i:11107271 original size:18 final size:18
Alignment explanation
Indices: 11107248--11107286 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
11107238 CACTGAGGGG
11107248 TACCTTCCATCTTAGGAA
1 TACCTTCCATCTTAGGAA
11107266 TACCTTCCATCTTAGGAA
1 TACCTTCCATCTTAGGAA
11107284 TAC
1 TAC
11107287 TCACCAGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (18 bp):
TACCTTCCATCTTAGGAA
Found at i:11107574 original size:21 final size:21
Alignment explanation
Indices: 11107548--11107589 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
11107538 AGTCACTGTC
11107548 ATTGATTCTGTCACTGTATCT
1 ATTGATTCTGTCACTGTATCT
11107569 ATTGATTCTGTCACTGTATCT
1 ATTGATTCTGTCACTGTATCT
11107590 TTGTAGCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (21 bp):
ATTGATTCTGTCACTGTATCT
Found at i:11107704 original size:3 final size:3
Alignment explanation
Indices: 11107696--11107725 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
11107686 TATATTATAC
*
11107696 TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11107726 ATAATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:11108240 original size:27 final size:26
Alignment explanation
Indices: 11108202--11108252 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
11108192 ATTCGAGGAG
*
11108202 GAGGCCGTTGAACAGAAAAAAATAAGC
1 GAGGCAGTTGAACA-AAAAAAATAAGC
*
11108229 GAGGCAGTTGAACAAAAAAGATAA
1 GAGGCAGTTGAACAAAAAAAATAA
11108253 AAAGGGGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.51, C:0.12, G:0.25, T:0.12
Consensus pattern (26 bp):
GAGGCAGTTGAACAAAAAAAATAAGC
Found at i:11109322 original size:2 final size:2
Alignment explanation
Indices: 11109315--11109348 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
11109305 TTAACATTGT
11109315 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11109349 ATTTTTTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11109426 original size:23 final size:24
Alignment explanation
Indices: 11109385--11109434 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
11109375 AGACTGAACA
**
11109385 TTTTTCTTCATTATTATTTTTATT
1 TTTTTCTTCATTAACATTTTTATT
11109409 TTTTTCTTC-TTAACATTTTTATT
1 TTTTTCTTCATTAACATTTTTATT
11109432 TTT
1 TTT
11109435 ATTTTCTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTCTTCATTAACATTTTTATT
Found at i:11109456 original size:27 final size:28
Alignment explanation
Indices: 11109426--11109491 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
11109416 TCTTAACATT
*
11109426 TTTATTTTTATTT-TCTC-AATTTATTTA
1 TTTATTTTTATTTCTCTCTAATTTA-ATA
*
11109453 TTTATTTATTTTTTCCTCTCTAATTTAATA
1 TTTATTT-TTATTT-CTCTCTAATTTAATA
11109483 TTTATTTTT
1 TTTATTTTT
11109492 CAATCTAACC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 7 0.21
28 5 0.15
29 2 0.06
30 13 0.39
31 6 0.18
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTATTTTTATTTCTCTCTAATTTAATA
Found at i:11111542 original size:21 final size:21
Alignment explanation
Indices: 11111518--11111561 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
11111508 AGGATGAATC
11111518 AAGAAAACAAATGACCAAGTT
1 AAGAAAACAAATGACCAAGTT
*
11111539 AAGAGAACAAATGACCAAGTT
1 AAGAAAACAAATGACCAAGTT
11111560 AA
1 AA
11111562 TAGACATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.14
Consensus pattern (21 bp):
AAGAAAACAAATGACCAAGTT
Found at i:11113597 original size:99 final size:99
Alignment explanation
Indices: 11113482--11113676 Score: 311
Period size: 99 Copynumber: 2.0 Consensus size: 99
11113472 TATATATATA
* * *
11113482 TACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTGAA-TGCCCCGGCTTTATGGATAAGA
1 TACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACT-CCCCAGCTTTATGGATAAGA
* *
11113546 TTCAACTAGCCTGATAAATGTGATTATAATATCTG
65 TTCAACTAGCATGATAAAGGTGATTATAATATCTG
*
11113581 TACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACTTCCCAGCTTTATGGATAAGAT
1 TACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACTCCCCAGCTTTATGGATAAGAT
*
11113646 TCAACTAGCATGATAAAGGTGGTTATAATAT
66 TCAACTAGCATGATAAAGGTGATTATAATAT
11113677 TGAGTTGTCC
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
99 87 0.99
100 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (99 bp):
TACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACTCCCCAGCTTTATGGATAAGAT
TCAACTAGCATGATAAAGGTGATTATAATATCTG
Found at i:11115426 original size:83 final size:82
Alignment explanation
Indices: 11115283--11115446 Score: 211
Period size: 83 Copynumber: 2.0 Consensus size: 82
11115273 CTGTAAACAA
* * * * * *
11115283 AAACCTTCAAGTTTGATTTCATTCAGCTCAAGGTCAGTCGAATTTATAGCATAGCTCAAGGCGAG
1 AAACCTTCAAGTTCGATTACATTCAGATCAAGGACAATCAAATTTATAGCATAGCTCAAGGCGAG
*
11115348 AAATGATATCTATCAAT
66 AAAGGATATCTATCAAT
** *
11115365 AAACCTTTGAGTTCGATTACATTCAGATCAAGGACATATCAAATTTATAGCATAGCTCAAGGTGA
1 AAACCTTCAAGTTCGATTACATTCAGATCAAGGACA-ATCAAATTTATAGCATAGCTCAAGGCGA
* *
11115430 GAAGGGTTATCTATCAA
65 GAAAGGATATCTATCAA
11115447 CCAAAACCTT
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
82 30 0.43
83 39 0.57
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (82 bp):
AAACCTTCAAGTTCGATTACATTCAGATCAAGGACAATCAAATTTATAGCATAGCTCAAGGCGAG
AAAGGATATCTATCAAT
Found at i:11118629 original size:147 final size:151
Alignment explanation
Indices: 11118462--11118738 Score: 517
Period size: 149 Copynumber: 1.9 Consensus size: 151
11118452 ATTTTACAAA
11118462 TTCTAATTCACCCCTCTTGTTG-TTTAAT-CTATACAAGCTTTCCTTAAGCTTATCTAACACCCA
1 TTCTAATTCACCCCTCTTGTTGTTTTAATCCTATACAAGCTTTCCTTAAGCTTATCTAACACCCA
11118525 AGCTTTCAACACCGACCC-AAATTGAAAGAACCAACGAATTTCATAAGCTTA-TTTGAAGTGGCA
66 AGCTTTCAACACCGACCCAAAATTGAAAGAACCAACGAATTTCATAAGCTTACTTTGAAGTGGCA
11118588 AAACCCATTTTACAAATTAAT
131 AAACCCATTTTACAAATTAAT
11118609 TTCTAATTCACCCCTCTTGTTGTTTTAATCCTATACAAGCTTTCCTTAAGCTTATCTAACACCCA
1 TTCTAATTCACCCCTCTTGTTGTTTTAATCCTATACAAGCTTTCCTTAAGCTTATCTAACACCCA
11118674 AGCTTTCAACACCGACCCAAAATTGAAAGAACCAACGAATTTCATAAGCTTACCTTTGAAGTGGC
66 AGCTTTCAACACCGACCCAAAATTGAAAGAACCAACGAATTTCATAAGCTTA-CTTTGAAGTGGC
11118739 TTCCACGAGC
Statistics
Matches: 125, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
147 22 0.18
148 6 0.05
149 53 0.42
150 33 0.26
152 11 0.09
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (151 bp):
TTCTAATTCACCCCTCTTGTTGTTTTAATCCTATACAAGCTTTCCTTAAGCTTATCTAACACCCA
AGCTTTCAACACCGACCCAAAATTGAAAGAACCAACGAATTTCATAAGCTTACTTTGAAGTGGCA
AAACCCATTTTACAAATTAAT
Found at i:11121654 original size:21 final size:21
Alignment explanation
Indices: 11121628--11121668 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11121618 AGTCCAACCG
11121628 TTTGTAACTCATGCAATTACA
1 TTTGTAACTCATGCAATTACA
* *
11121649 TTTGTAACTCTTGCATTTAC
1 TTTGTAACTCATGCAATTAC
11121669 TCTGTAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTGTAACTCATGCAATTACA
Found at i:11129074 original size:14 final size:14
Alignment explanation
Indices: 11129055--11129090 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
11129045 GAGATTTTTC
11129055 GAATTTCTCATAAG
1 GAATTTCTCATAAG
11129069 GAATTTCTCATAAG
1 GAATTTCTCATAAG
11129083 GAATTTCT
1 GAATTTCT
11129091 TAGTTGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (14 bp):
GAATTTCTCATAAG
Found at i:11135153 original size:22 final size:21
Alignment explanation
Indices: 11135113--11135153 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
11135103 TCTACTATAT
**
11135113 AAAATAATAAATAGGACTAGC
1 AAAATAATAAATACAACTAGC
11135134 AAAATAATGAAATACAACTA
1 AAAATAAT-AAATACAACTA
11135154 ATTAAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAATAATAAATACAACTAGC
Found at i:11135169 original size:109 final size:111
Alignment explanation
Indices: 11135023--11135243 Score: 419
Period size: 109 Copynumber: 2.0 Consensus size: 111
11135013 ATATTATCAT
11135023 GCAAAATAATGAAATACAACTAATTAAAGAAAATCACTATTATAGATTAAATTAAAAAATTAAAA
1 GCAAAATAATGAAATACAACTAATTAAAGAAAATCACTATTATAGATTAAATTAAAAAATTAAAA
11135088 AATACAAGGATTAAATCTACTATATAAAATAA-TAAA-TAGGACTA
66 AATACAAGGATTAAATCTACTATATAAAATAACTAAATTAGGACTA
11135132 GCAAAATAATGAAATACAACTAATTAAAGAAAATCACTATTATAGATTAAATTAAAAAATTAAAA
1 GCAAAATAATGAAATACAACTAATTAAAGAAAATCACTATTATAGATTAAATTAAAAAATTAAAA
11135197 AATACAAGGATTAAATCTACTATATAAAATAATCTAAATTAGGACTA
66 AATACAAGGATTAAATCTACTATATAAAATAA-CTAAATTAGGACTA
11135244 AAATAATTGA
Statistics
Matches: 109, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
109 97 0.89
111 4 0.04
112 8 0.07
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (111 bp):
GCAAAATAATGAAATACAACTAATTAAAGAAAATCACTATTATAGATTAAATTAAAAAATTAAAA
AATACAAGGATTAAATCTACTATATAAAATAACTAAATTAGGACTA
Found at i:11136550 original size:22 final size:22
Alignment explanation
Indices: 11136524--11136569 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
11136514 CTGAAAGAGA
*
11136524 AATAAAAAATAAAAATATTAAT
1 AATAAAAAATAAAAATAGTAAT
** *
11136546 AATAATTAATAATAATAGTAAT
1 AATAAAAAATAAAAATAGTAAT
11136568 AA
1 AA
11136570 CATAAAAACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
AATAAAAAATAAAAATAGTAAT
Found at i:11139652 original size:507 final size:509
Alignment explanation
Indices: 11138691--11139693 Score: 1178
Period size: 507 Copynumber: 2.0 Consensus size: 509
11138681 TTTGTGTTGG
* *
11138691 TTCATTGAACTTTGATGTAATGTTTCATGAAAAGCAAATCAAAGCAATATTTTTACCTAATTTTA
1 TTCATTGAACTATGATGTAAAGTTTCATGAAAAGCAAATCAAAGCAATATTTTTACCTAATTTTA
* * * ** * **
11138756 AAAACCATCAAAAGTTTATTATGAATAATAATTTAGTGTGACATTGGACCATCAATTTTTTTAAA
66 AAAACCATAAAAAGTTTAATATAAATAATAATTTACCGTGACATTGAACCATCAATAATTTTAAA
* * * *
11138821 TATTGTTGAAATATATTTTACTTGAATTTAAAGCAAAAACAATTATAACTATAATCGTATTAAAT
131 TATTATTGAAATATATTTTACATGAATTGAAA-CAAAAACAACTATAACTATAATCGTATTAAAT
* * *
11138886 ATGTACTTAGATTTAACACTCATTTTTAAAATTTAAATCATATGAACATTAAGTTATTTCTTTTA
195 A--TACTTACATATAACACTCACTTTTAAAATTTAAATCATATGAACATTAAGTTATTTCTTTTA
* * * * * *
11138951 TCTATTTGAAAAATTCAATGCATGTGTATTTTTTAGATTTGTTTTGTTTTAATTTTATTTATATT
258 TCTATTTGAAAAATCCAATGCAAGTGCATTTCTAAGATTTGTTTTATTTTAATTTTATTTATATT
** * * * *
11139016 AATAAAAAAACCTATAGTAATTTATTTCTATGATGACAACAAGCACCAATGGTCTAGTGGTAGAA
323 AATAAAAAAACCTATAGTAAAGTATTTCTATAATCACAACAAGCACCAATGGTCCAGTGATAGAA
* *
11139081 TAGTACCTTACCACAATACAAATGCGGGTTCAATTCTTGGCTGGTGCACCTTAGAAGTAATGATG
388 TAGTACCTTACCACAATACAAATGCGGGTTCAATTCTCGGCTGGTGCACCTTAGAAGCAATGATG
* *
11139146 AAAGCCGTATTATAGAAGAATATGGTTGTTTTTGAAAATCTGACAAAATATTTTTGA
453 AAAGCCGTATTATAGAAGAATATGGTTATTCTTGAAAATCTGACAAAATATTTTTGA
* * * * *
11139203 TTCATTGACCTATGATTTAAAGTTTCATGAAAAGCAAATGAATGCAAT-TTTTCTACCTAGTTTT
1 TTCATTGAACTATGATGTAAAGTTTCATGAAAAGCAAATCAAAGCAATATTTT-TACCTAATTTT
*
11139267 AAAAACCATAAAAAAAG-TTAATATAAATAATAATTTACCGTGACTTTGAACCAAT-AA-AATTT
65 AAAAACCAT--AAAAAGTTTAATATAAATAATAATTTACCGTGACATTGAACC-ATCAATAATTT
* *
11139329 TCAATATTATTGAAAAATATATTTTTACATGAATTGAAA-ATAAAA-GACTATAACTATAATCGT
127 TAAATATTATTG--AAATATA-TTTTACATGAATTGAAACA-AAAACAACTATAACTATAATCGT
* * ** * *
11139392 ATTAAA-A-ATTTACATAT-A-ACTCACTTTT-AAATTTAAGTTGTGTGAATATTAAGTTATTT-
188 ATTAAATATACTTACATATAACACTCACTTTTAAAATTTAAATCATATGAACATTAAGTTATTTC
*
11139451 TATTCTATCTATTTGAAAAATCCAATGCAAGTGCATTTCTAAGATTTCCTTTTTATTTTAATTTT
253 T-TT-TATCTATTTGAAAAATCCAATGCAAGTGCATTTCTAAGATTT--GTTTTATTTTAATTTT
** * *
11139516 ATTTATATTAAT-AAAAATTCTATAG-AAGAGT-TTTCTATAATCAGATCAAGCACCAATGGTCC
314 ATTTATATTAATAAAAAAACCTATAGTAA-AGTATTTCTATAATCACAACAAGCACCAATGGTCC
* * **
11139578 AGTGATAGAATAGTATCC-TATCACGATACAAACT-CGGGTTTGATTCTCGGCATGGT-CACCTT
378 AGTGATAGAATAGTA-CCTTACCACAATACAAA-TGCGGGTTCAATTCTCGGC-TGGTGCACCTT
* **
11139640 TGAAGCAATGATGAAAGTTGTATTATAGAAGAATATGGTTATTCTTGAAAATCT
440 AGAAGCAATGATGAAAGCCGTATTATAGAAGAATATGGTTATTCTTGAAAATCT
11139694 AAAATCTAGA
Statistics
Matches: 416, Mismatches: 59, Indels: 37
0.81 0.12 0.07
Matches are distributed among these distances:
505 1 0.00
506 28 0.07
507 168 0.40
508 20 0.05
509 33 0.08
511 4 0.01
512 75 0.18
513 54 0.13
514 18 0.04
515 15 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (509 bp):
TTCATTGAACTATGATGTAAAGTTTCATGAAAAGCAAATCAAAGCAATATTTTTACCTAATTTTA
AAAACCATAAAAAGTTTAATATAAATAATAATTTACCGTGACATTGAACCATCAATAATTTTAAA
TATTATTGAAATATATTTTACATGAATTGAAACAAAAACAACTATAACTATAATCGTATTAAATA
TACTTACATATAACACTCACTTTTAAAATTTAAATCATATGAACATTAAGTTATTTCTTTTATCT
ATTTGAAAAATCCAATGCAAGTGCATTTCTAAGATTTGTTTTATTTTAATTTTATTTATATTAAT
AAAAAAACCTATAGTAAAGTATTTCTATAATCACAACAAGCACCAATGGTCCAGTGATAGAATAG
TACCTTACCACAATACAAATGCGGGTTCAATTCTCGGCTGGTGCACCTTAGAAGCAATGATGAAA
GCCGTATTATAGAAGAATATGGTTATTCTTGAAAATCTGACAAAATATTTTTGA
Found at i:11144379 original size:92 final size:92
Alignment explanation
Indices: 11144222--11144408 Score: 374
Period size: 92 Copynumber: 2.0 Consensus size: 92
11144212 TCCCGATAGT
11144222 TTCACCTTTAAAGCAATGATAAAAGTTGGATCATAGATGAATAGGTTCTTCTTGAAAATCTAAGG
1 TTCACCTTTAAAGCAATGATAAAAGTTGGATCATAGATGAATAGGTTCTTCTTGAAAATCTAAGG
11144287 TTTAATGTTTAAGGTTGACATGTTTTG
66 TTTAATGTTTAAGGTTGACATGTTTTG
11144314 TTCACCTTTAAAGCAATGATAAAAGTTGGATCATAGATGAATAGGTTCTTCTTGAAAATCTAAGG
1 TTCACCTTTAAAGCAATGATAAAAGTTGGATCATAGATGAATAGGTTCTTCTTGAAAATCTAAGG
11144379 TTTAATGTTTAAGGTTGACATGTTTTG
66 TTTAATGTTTAAGGTTGACATGTTTTG
11144406 TTC
1 TTC
11144409 TTAATTTAGT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (92 bp):
TTCACCTTTAAAGCAATGATAAAAGTTGGATCATAGATGAATAGGTTCTTCTTGAAAATCTAAGG
TTTAATGTTTAAGGTTGACATGTTTTG
Found at i:11146638 original size:10 final size:10
Alignment explanation
Indices: 11146625--11146666 Score: 66
Period size: 10 Copynumber: 4.1 Consensus size: 10
11146615 CATTTTCCCT
11146625 TATTTTTCTC
1 TATTTTTCTC
11146635 TATTTTTCTC
1 TATTTTTCTC
11146645 TATTTTTCTC
1 TATTTTTCTC
*
11146655 TTTTGTTTCTC
1 TATT-TTTCTC
11146666 T
1 T
11146667 CTCCCTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 23 0.77
11 7 0.23
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.71
Consensus pattern (10 bp):
TATTTTTCTC
Found at i:11147433 original size:14 final size:14
Alignment explanation
Indices: 11147414--11147469 Score: 51
Period size: 14 Copynumber: 3.8 Consensus size: 14
11147404 TTATTTTTAT
11147414 TATTAATAATAATA
1 TATTAATAATAATA
11147428 TATTAATAATATAATAA
1 TATTAAT-A-ATAAT-A
*
11147445 TATT-ATAACAATA
1 TATTAATAATAATA
*
11147458 TTATTAGTAATA
1 -TATTAATAATA
11147470 TCAAAAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 15 0.44
15 6 0.18
16 7 0.21
17 5 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (14 bp):
TATTAATAATAATA
Found at i:11147436 original size:11 final size:11
Alignment explanation
Indices: 11147417--11147457 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
11147407 TTTTTATTAT
11147417 TAATAATAATA
1 TAATAATAATA
*
11147428 TATTAATAATA
1 TAATAATAATA
*
11147439 TAATAATATTA
1 TAATAATAATA
*
11147450 TAACAATA
1 TAATAATA
11147458 TTATTAGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (11 bp):
TAATAATAATA
Found at i:11147457 original size:19 final size:19
Alignment explanation
Indices: 11147419--11147458 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
11147409 TTTATTATTA
*
11147419 ATAATAATATATTAATAAT
1 ATAATAATATATTAACAAT
11147438 ATAATAATAT-TATAACAAT
1 ATAATAATATAT-TAACAAT
11147457 AT
1 AT
11147459 TATTAGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAATAATATATTAACAAT
Found at i:11147875 original size:114 final size:116
Alignment explanation
Indices: 11147659--11147902 Score: 336
Period size: 114 Copynumber: 2.1 Consensus size: 116
11147649 TGCACTCAGA
* * * *
11147659 GAATATCAAATCTTGGAAGATAAGGATTTGTTCTGTTTCTTCTTGAAGGAAATATCAGATCTGAA
1 GAATATCAAATCTTAGAAAATAAGGATTTGTTCCGTTACTTCTTGAAGGAAATATCAGATCTGAA
* * * *
11147724 AGGAGTTTGATCCATTGAATTGGGGCAGACTTATTCCACTTACTCTGAAGG
66 AGGAGGTTGATCCATTGAATCGGAGCAGACATATTCCACTTACTCTGAAGG
*
11147775 GAATATCAAATCTTAGAAAAT-AGAGATTTGTTCCGCTTAC-TC-TGAAGGGAATATCAGATCT-
1 GAATATCAAATCTTAGAAAATAAG-GATTTGTTCCG-TTACTTCTTGAAGGAAATATCAGATCTG
*
11147836 AAAGGAGGTTGATCCATTGAATCGGAGTAGACCAT-TTCCACTTACTCTGAAGG
64 AAAGGAGGTTGATCCATTGAATCGGAGCAGA-CATATTCCACTTACTCTGAAGG
11147889 GAATATCAAATCTT
1 GAATATCAAATCTT
11147903 GGAGGAGTTT
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
114 59 0.51
115 22 0.19
116 31 0.27
117 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (116 bp):
GAATATCAAATCTTAGAAAATAAGGATTTGTTCCGTTACTTCTTGAAGGAAATATCAGATCTGAA
AGGAGGTTGATCCATTGAATCGGAGCAGACATATTCCACTTACTCTGAAGG
Found at i:11147926 original size:67 final size:67
Alignment explanation
Indices: 11147802--11148263 Score: 703
Period size: 67 Copynumber: 6.9 Consensus size: 67
11147792 AAATAGAGAT
* * ** * *
11147802 TTGTTCCGCTTACTCTGAAGGGAATATCAGATC-TAAAGGAGGTTGATCCATTGAATCGGAGTAG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11147866 ACC
66 A-C
*
11147869 AT-TTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11147933 AC
66 AC
* * *
11147935 TTGTTCCACTTACTCTGAATGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATAGGGGAAG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11148000 AC
66 AC
* * *
11148002 TTGTTCCACTTACTCTGAAGGGAATATTAAATCTTGGAGAAGTTTGATCCATTGAATCGGGGTAA
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11148067 AC
66 AC
* * * * *
11148069 TTGTTCAACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGTTTGATCCATTGAATCGAGGCAG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11148134 AC
66 AC
* * *
11148136 TTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGGAGTTTGATCTATTGAATCGGGGCAG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
11148201 AC
66 AC
*
11148203 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAATTTGATCCATTGAATCGGG
1 TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGG
11148264 ACAGATTTGC
Statistics
Matches: 363, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
66 30 0.08
67 333 0.92
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (67 bp):
TTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCGGGGTAG
AC
Found at i:11148814 original size:183 final size:180
Alignment explanation
Indices: 11148509--11148871 Score: 674
Period size: 183 Copynumber: 2.0 Consensus size: 180
11148499 AACTTGGCAC
11148509 ATATATCATTATCATGCGTTTCCGTGTCATGATCCTATTTATGCTATCATGTATGTATGATTACT
1 ATATATCATTATCATGCGTTTCCGTGTCATGATCCTATTTATGCTATCATGTATGTATGATTACT
11148574 TTAAAAGTATTTATGTCTGATGCGAATTTTCTCTTGTTGAGGGCCTTGTACTTCAATCGAATTTG
66 TTAAAAGTATTTATGTCTGATGCGAATTTTCTCTTGTTGAGGGCCTTGTACTTCAATCGAATTTG
11148639 GGGCAGGAAAAAGCTGACCATAATTTATCCTAA-TTTAACTTGGGTTGGA
131 GGGCAGGAAAAAGCTGACCATAATTTATCCTAATTTTAACTTGGGTTGGA
11148688 ATATATCATTATCATGCGTTTCCGTGTCATGATCCTATTTATGCCTATCATGTATGTAATGATTA
1 ATATATCATTATCATGCGTTTCCGTGTCATGATCCTATTTATG-CTATCATGTATGT-ATGATTA
*
11148753 CTTTAAAAGTATTTTATTGTCTGATGCGAATTTTCTCTTGTTGATGGCCTTGTACTTCAATCGAA
64 CTTTAAAAGTA-TTTA-TGTCTGATGCGAATTTTCTCTTGTTGAGGGCCTTGTACTTCAATCGAA
11148818 TTTGGGGCAGGAAAAAGCTGACCATAATTTATCCTAATTTTAACTTGGGTTGGA
127 TTTGGGGCAGGAAAAAGCTGACCATAATTTATCCTAATTTTAACTTGGGTTGGA
11148872 TACTCTTTCG
Statistics
Matches: 178, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
179 43 0.24
180 13 0.07
181 18 0.10
182 4 0.02
183 84 0.47
184 16 0.09
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (180 bp):
ATATATCATTATCATGCGTTTCCGTGTCATGATCCTATTTATGCTATCATGTATGTATGATTACT
TTAAAAGTATTTATGTCTGATGCGAATTTTCTCTTGTTGAGGGCCTTGTACTTCAATCGAATTTG
GGGCAGGAAAAAGCTGACCATAATTTATCCTAATTTTAACTTGGGTTGGA
Found at i:11149633 original size:6 final size:6
Alignment explanation
Indices: 11149613--11149652 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
11149603 TTTCATATAT
11149613 TTTTTC TTCTTTC TTTTTC -TTTTC -TTTTC TTTTTC TTTTT
1 TTTTTC TT-TTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
11149653 TTCAAGCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 10 0.31
6 16 0.50
7 6 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:11149638 original size:11 final size:11
Alignment explanation
Indices: 11149614--11149651 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
11149604 TTCATATATT
11149614 TTTTCTTCTTTC
1 TTTTCTT-TTTC
11149626 TTTT-TCTTTTC
1 TTTTCT-TTTTC
11149637 TTTTCTTTTTC
1 TTTTCTTTTTC
11149648 TTTT
1 TTTT
11149652 TTTCAAGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 18 0.75
12 6 0.25
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:11153210 original size:26 final size:26
Alignment explanation
Indices: 11153176--11153245 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
11153166 TCGCATATTA
11153176 AAATAGAATAAAATAATAATAAATAAC
1 AAAT-GAATAAAATAATAATAAATAAC
*
11153203 AAATGAATGAAATAATAATAAATAAC
1 AAATGAATAAAATAATAATAAATAAC
11153229 AAATGAATGAAAA-AATA
1 AAATGAAT-AAAATAATA
11153246 TGCATGAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 33 0.82
27 7 0.17
ACGTcount: A:0.69, C:0.03, G:0.07, T:0.21
Consensus pattern (26 bp):
AAATGAATAAAATAATAATAAATAAC
Found at i:11162983 original size:17 final size:17
Alignment explanation
Indices: 11162961--11162997 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
11162951 ATTTTTATTG
11162961 TTAATAATAATAATAA-A
1 TTAATAAT-ATAATAATA
11162978 TTAATAATATAATAATA
1 TTAATAATATAATAATA
11162995 TTA
1 TTA
11162998 TAACAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAATAATATAATAATA
Found at i:11162984 original size:8 final size:9
Alignment explanation
Indices: 11162961--11162997 Score: 51
Period size: 8 Copynumber: 4.3 Consensus size: 9
11162951 ATTTTTATTG
11162961 TTAATAATA
1 TTAATAATA
*
11162970 ATAATAA-A
1 TTAATAATA
11162978 TTAATAATA
1 TTAATAATA
11162987 -TAATAATA
1 TTAATAATA
11162995 TTA
1 TTA
11162998 TAACAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
8 15 0.62
9 9 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
TTAATAATA
Found at i:11162993 original size:11 final size:11
Alignment explanation
Indices: 11162964--11163005 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
11162954 TTTATTGTTA
11162964 ATAATAATAAT
1 ATAATAATAAT
11162975 A-AATTAATAAT
1 ATAA-TAATAAT
*
11162986 ATAATAATATT
1 ATAATAATAAT
*
11162997 ATAACAATA
1 ATAATAATA
11163006 TTATTAGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 2 0.07
11 23 0.85
12 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:11163858 original size:6 final size:6
Alignment explanation
Indices: 11163847--11163872 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11163837 TTCAATATTT
11163847 AAACCG AAACCG AAACCG AAACCG AA
1 AAACCG AAACCG AAACCG AAACCG AA
11163873 TAGTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.31, G:0.15, T:0.00
Consensus pattern (6 bp):
AAACCG
Found at i:11163959 original size:18 final size:18
Alignment explanation
Indices: 11163904--11163967 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
11163894 TGAAACCGAT
*
11163904 TTTTTCGGTTCGGTTTGG
1 TTTTTCGGTTCGGTTCGG
11163922 TTTTT---TTAACGGTTCGGG
1 TTTTTCGGTT--CGGTTC-GG
11163940 TTTTTCGGTTCGGTTCGG
1 TTTTTCGGTTCGGTTCGG
*
11163958 TTTATCGGTT
1 TTTTTCGGTT
11163968 TTTCAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
15 2 0.05
17 5 0.13
18 23 0.61
19 6 0.16
21 2 0.05
ACGTcount: A:0.05, C:0.12, G:0.30, T:0.53
Consensus pattern (18 bp):
TTTTTCGGTTCGGTTCGG
Found at i:11175932 original size:288 final size:280
Alignment explanation
Indices: 11175379--11175948 Score: 1043
Period size: 288 Copynumber: 2.0 Consensus size: 280
11175369 AATGATTGCA
11175379 GCAGGGAACTACAGGTCTTGAGGTCCTGCTATGAACAGGTTGCTGACATTTTAACTAAACCACTG
1 GCAGGGAACTACAGGTCTTGAGGTCCTGCTATGAACAGGTTGCTGACATTTTAACTAAACCACTG
11175444 TCAGCACCGTTGTTTATAAAACTAGACAGAAAAACGTGGTTGTTCAACTACAATGTGGAGTTTTT
66 TCAGCACCGTTGTTTATAAAACTAGACAG-AAAACGTGGTTGTTCAACTACAATGTGGAGTTTTT
11175509 AAAGCATGAAGTTTGAAGCAGTAGGGAAATGTTAGTGTCTATGCAGTAAGGGAGTTAGCAGAGTA
130 AAAGCATGAAGTTTGAAGCAGTAGGGAAATGTTAGTGTCTATGCAGTAAGGGAGTTAGCAGAGTA
11175574 AAGATTGGATAGTAAGGGGAATGTTAGTGTATGATGTATGCATGTATTTCATACATGTGCATATG
195 AAGATTGGATAGTAAGGGGAATGTTAGTGTATGATGTATGCATGTATTTCATACATGTGCATATG
11175639 TGCATGTGTGAAGAGTGTGAG
260 TGCATGTGTGAAGAGTGTGAG
11175660 GCAGGGAAACTACAGGTTCTTGAGGTCCCTGCATATGAACAGGTTGCTGACATTTTAACTAAACC
1 GCAGGG-AACTACAGG-TCTTGAGGT-CCTGC-TATGAACAGGTTGCTGACATTTTAACTAAACC
11175725 ACTGTCAGCACCGTTGTTTATAAAACATAGACAG-AAACTGTTGGTTGTTCAACTACAATGTGGA
62 ACTGTCAGCACCGTTGTTTATAAAAC-TAGACAGAAAAC-G-TGGTTGTTCAACTACAATGTGGA
11175789 GTTTTTAAAGCATGAAGTTTGAAGCAGTAAGGGAAATGTTAGTGTCTATGCAGTAAGGGAGTTAG
124 GTTTTTAAAGCATGAAGTTTGAAGCAGT-AGGGAAATGTTAGTGTCTATGCAGTAAGGGAGTTAG
11175854 CAGAGTAAAGATTGGATTAGTAAGGGGAATGTTAGTGTATGATGTATGCATGTATTTCATACATG
188 CAGAGTAAAGATTGGA-TAGTAAGGGGAATGTTAGTGTATGATGTATGCATGTATTTCATACATG
11175919 TGCATATGTGCATGTGTGAAGAGTGTGAG
252 TGCATATGTGCATGTGTGAAGAGTGTGAG
11175948 G
1 G
11175949 TGGTTAGAGC
Statistics
Matches: 280, Mismatches: 0, Indels: 11
0.96 0.00 0.04
Matches are distributed among these distances:
281 6 0.02
282 9 0.03
283 9 0.03
284 9 0.03
285 59 0.21
286 58 0.21
287 52 0.19
288 78 0.28
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (280 bp):
GCAGGGAACTACAGGTCTTGAGGTCCTGCTATGAACAGGTTGCTGACATTTTAACTAAACCACTG
TCAGCACCGTTGTTTATAAAACTAGACAGAAAACGTGGTTGTTCAACTACAATGTGGAGTTTTTA
AAGCATGAAGTTTGAAGCAGTAGGGAAATGTTAGTGTCTATGCAGTAAGGGAGTTAGCAGAGTAA
AGATTGGATAGTAAGGGGAATGTTAGTGTATGATGTATGCATGTATTTCATACATGTGCATATGT
GCATGTGTGAAGAGTGTGAG
Found at i:11179395 original size:3 final size:3
Alignment explanation
Indices: 11179387--11179413 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
11179377 TTGAAAGGAG
11179387 GTT GTT GTT GTT GTT GTT GTT GTT GTT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT
11179414 CAGCCTCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
GTT
Found at i:11195678 original size:23 final size:23
Alignment explanation
Indices: 11195648--11195702 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
11195638 TTGTGGGCCT
11195648 CTTC-TCTTCTTATTTACTCGGA
1 CTTCATCTTCTTATTTACTCGGA
* *
11195670 CTTCATCTTCTTCTTTACTTGGA
1 CTTCATCTTCTTATTTACTCGGA
11195693 CTTCATCTTC
1 CTTCATCTTC
11195703 ATGATCCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.13, C:0.29, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCATCTTCTTATTTACTCGGA
Found at i:11195924 original size:6 final size:6
Alignment explanation
Indices: 11195888--11196018 Score: 99
Period size: 6 Copynumber: 21.7 Consensus size: 6
11195878 TCACTTTGGT
* * * * *
11195888 TTTTTC -TTTTA TTTTTA TTTTTA TTTTTC TTTCTC TTTTTTC TTTTAC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC
* * *
11195936 TTTATCTC TTTCTC TTTCTTC TTTTTC TTTTTC TTTTTC TTTTAC TTTTAC
1 TTT-T-TC TTTTTC TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
* *
11195987 TTTTAC -TTTAC TTTTT- TTCTTT- TTTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTT
11196019 CTTCTTTTAA
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
5 14 0.13
6 78 0.73
7 11 0.10
8 4 0.04
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:11195945 original size:27 final size:27
Alignment explanation
Indices: 11195915--11196018 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 27
11195905 TTTTTATTTT
11195915 TCTTTCTCTTTTTTCTTTTACTTTATC
1 TCTTTCTCTTTTTTCTTTTACTTTATC
* * *
11195942 TCTTTCTCTTTCTTCTTTTTCTTTTTC
1 TCTTTCTCTTTTTTCTTTTACTTTATC
* * *
11195969 TTTTTCTTTTACTTTTACTTTTACTTTACTT
1 TCTTTCTCTT--TTTT-CTTTTACTTTA-TC
* *
11196000 TTTTTCTTTTTTTTCTTTT
1 TCTTTCTCTTTTTTCTTTT
11196019 CTTCTTTTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
27 32 0.50
28 5 0.08
29 7 0.11
30 9 0.14
31 11 0.17
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (27 bp):
TCTTTCTCTTTTTTCTTTTACTTTATC
Found at i:11200208 original size:16 final size:16
Alignment explanation
Indices: 11200187--11200224 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
11200177 AAACAAATAA
11200187 AAGAAATGTAAAAATG-
1 AAGAAATGT-AAAATGC
*
11200203 AAGAAATGTGAAATGC
1 AAGAAATGTAAAATGC
11200219 AAGAAA
1 AAGAAA
11200225 ACGATTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.61, C:0.03, G:0.21, T:0.16
Consensus pattern (16 bp):
AAGAAATGTAAAATGC
Found at i:11200491 original size:17 final size:18
Alignment explanation
Indices: 11200463--11200496 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11200453 TTCCCTGGCT
*
11200463 TGTTGCATTCTTCAACCA
1 TGTTGCATTCTTAAACCA
11200481 TGTTG-ATTCTTAAACC
1 TGTTGCATTCTTAAACC
11200497 CTCCATGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTGCATTCTTAAACCA
Found at i:11208600 original size:28 final size:28
Alignment explanation
Indices: 11208563--11208625 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
11208553 GAAAAAGAAA
11208563 GTGTCAGAGTTTGTCACAGGTGTCTAGT
1 GTGTCAGAGTTTGTCACAGGTGTCTAGT
11208591 GTGTCAGAGTTTGTCACAGGTGTCTAGT
1 GTGTCAGAGTTTGTCACAGGTGTCTAGT
11208619 GTGTCAG
1 GTGTCAG
11208626 GAGGTTAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.14, G:0.33, T:0.35
Consensus pattern (28 bp):
GTGTCAGAGTTTGTCACAGGTGTCTAGT
Found at i:11211019 original size:20 final size:20
Alignment explanation
Indices: 11210996--11211036 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
11210986 AAGAGGTGGG
*
11210996 TATCGATA-TTAAGGGGTCAA
1 TATCGATACTGAA-GGGTCAA
11211016 TATCGATACTGAAGGGTCAA
1 TATCGATACTGAAGGGTCAA
11211036 T
1 T
11211037 GTTGGTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
TATCGATACTGAAGGGTCAA
Found at i:11213999 original size:60 final size:60
Alignment explanation
Indices: 11213930--11214073 Score: 184
Period size: 60 Copynumber: 2.4 Consensus size: 60
11213920 ATATTTCCCA
* * * *
11213930 AAACTATGACTCTCATT-TCAAATTAGTCTTTAAAATTTTTAATATTTC-AATTTCATCCTT
1 AAACTATGACTCTCATTCT-AAATTAGTCCTTAAAATTTTGAACA-TTCGAATTTCATCCTC
* *
11213990 AAACTATGACTCTCATTCTAATTTAGTCCTTAAACTTTTGAACATTCGAATTTCATCCTC
1 AAACTATGACTCTCATTCTAAATTAGTCCTTAAAATTTTGAACATTCGAATTTCATCCTC
**
11214050 AAACTATGAAACTCATTCTAAATT
1 AAACTATGACTCTCATTCTAAATT
11214074 GGTCTCTAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
59 3 0.04
60 69 0.95
61 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.05, T:0.42
Consensus pattern (60 bp):
AAACTATGACTCTCATTCTAAATTAGTCCTTAAAATTTTGAACATTCGAATTTCATCCTC
Found at i:11214248 original size:60 final size:60
Alignment explanation
Indices: 11214153--11214310 Score: 176
Period size: 60 Copynumber: 2.6 Consensus size: 60
11214143 TATTTTAAGA
* * * * * *
11214153 GAAAATTGAAATATTCTAAAATTTTGGGGACTAATTTAGGATAA-AGATCATAGCTTGGGGAG
1 GAAAA-TGAAATGTTC-AAAAGTTTGAGGACTAATTTAGAATAATAG-TCAAAGCTTGAGGAG
*
11214215 GAAAATGAAATGTTCAAAAGTTTGAGGACTAATTTAGAATAATAGTCAAAGCTTGAGGAT
1 GAAAATGAAATGTTCAAAAGTTTGAGGACTAATTTAGAATAATAGTCAAAGCTTGAGGAG
* * *
11214275 GAAATTGAAATGTTTAAAAGTTT-ATGGATTAATTTA
1 GAAAATGAAATGTTCAAAAGTTTGA-GGACTAATTTA
11214311 AAACGAGGGT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
59 1 0.01
60 67 0.80
61 11 0.13
62 5 0.06
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (60 bp):
GAAAATGAAATGTTCAAAAGTTTGAGGACTAATTTAGAATAATAGTCAAAGCTTGAGGAG
Found at i:11220138 original size:30 final size:30
Alignment explanation
Indices: 11220082--11220139 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
11220072 TTTTATTGTC
* *
11220082 TTTTTTATTTTATTCATTATACTTTTAATT
1 TTTTTTAATTTATTCATTATAATTTTAATT
11220112 TTTTTTAATTTATTCATTGA-AATTTTAA
1 TTTTTTAATTTATTCATT-ATAATTTTAA
11220140 ATTATTCCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (30 bp):
TTTTTTAATTTATTCATTATAATTTTAATT
Found at i:11220400 original size:27 final size:27
Alignment explanation
Indices: 11220359--11220422 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
11220349 AACATGTCCT
* *
11220359 ATAATAATAATAAAATATTTTATAATA
1 ATAAAAATAATAAAATAATTTATAATA
*
11220386 ATTAAAATAATAAAATAATTTATAATA
1 ATAAAAATAATAAAATAATTTATAATA
11220413 ATAAAAATAA
1 ATAAAAATAA
11220423 GAACAATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
ATAAAAATAATAAAATAATTTATAATA
Found at i:11220410 original size:15 final size:15
Alignment explanation
Indices: 11220365--11220413 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
11220355 TCCTATAATA
*
11220365 ATAATAAAATATTTT
1 ATAATAAAATAATTT
* *
11220380 ATAAT-AATTAA--A
1 ATAATAAAATAATTT
11220392 ATAATAAAATAATTT
1 ATAATAAAATAATTT
11220407 ATAATAA
1 ATAATAA
11220414 TAAAAATAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 4 0.15
15 12 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAATAAAATAATTT
Found at i:11220414 original size:18 final size:17
Alignment explanation
Indices: 11220382--11220418 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
11220372 AATATTTTAT
11220382 AATAATTAAAATAATAA
1 AATAATTAAAATAATAA
*
11220399 AATAATTTATAATAATAA
1 AATAA-TTAAAATAATAA
11220417 AA
1 AA
11220419 ATAAGAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAATTAAAATAATAA
Found at i:11220902 original size:31 final size:31
Alignment explanation
Indices: 11220859--11220923 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
11220849 TAAGCTATGA
* * *
11220859 TCACTTTTGTTTTTATTTAATTAAGTTGTTG
1 TCACTTTCGTTTTTATTTAATTAAGATATTG
11220890 TCACTTTCGTTTTTATTTAATTAAGATATTG
1 TCACTTTCGTTTTTATTTAATTAAGATATTG
11220921 TCA
1 TCA
11220924 TCCTGAGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.57
Consensus pattern (31 bp):
TCACTTTCGTTTTTATTTAATTAAGATATTG
Found at i:11222377 original size:21 final size:21
Alignment explanation
Indices: 11222353--11222398 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
11222343 CAGTGACCAA
* *
11222353 AAGTGTACAAAATATAAACAT
1 AAGTGGACAAAACATAAACAT
11222374 AAGTGGACAAAACATAAACAT
1 AAGTGGACAAAACATAAACAT
11222395 AAGT
1 AAGT
11222399 AATTTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.20
Consensus pattern (21 bp):
AAGTGGACAAAACATAAACAT
Found at i:11237381 original size:22 final size:20
Alignment explanation
Indices: 11237334--11237381 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
11237324 ATAAGGAATA
* *
11237334 AATTATTTTTAAAACATAAT
1 AATTATTTTTAAAAAAAAAT
*
11237354 ATTTATTTTTATCAAAAAAAAT
1 AATTATTTTTA--AAAAAAAAT
11237376 AATTAT
1 AATTAT
11237382 AGTTTAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTATTTTTAAAAAAAAAT
Found at i:11238499 original size:20 final size:19
Alignment explanation
Indices: 11238458--11238499 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
11238448 AGTAGTGGAC
*
11238458 TTTAAATATATTTTATATA
1 TTTAAATATATTTTAGATA
11238477 TTTATAATATAATTTTAGA-A
1 TTTA-AATAT-ATTTTAGATA
11238497 TTT
1 TTT
11238500 TTCAGCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 9 0.45
21 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTAAATATATTTTAGATA
Found at i:11241985 original size:92 final size:92
Alignment explanation
Indices: 11241746--11241991 Score: 352
Period size: 92 Copynumber: 2.7 Consensus size: 92
11241736 ATGATCTTTT
* ** * *
11241746 TACTGGAAACGTTGGTCCCTCGAGTGAGGCATTGCTGATTCAAAGTGTTTTGAATCGAGCCAAGG
1 TACTGGAAATGTTGGTCCCTCGAGTGAGGCATCACTGATTCAAAGTGTTATGAATCGAGTCAAGG
*
11241811 TTGAATAAGTTCTTTTCATGAATTCTC
66 TTGAATAAGTTCTTCTCATGAATTCTC
* **
11241838 TACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCACTGATTCAAAGTGTCGTGAATCGAGTCAAGG
1 TACTGGAAATGTTGGTCCCTCGAGTGAGGCATCACTGATTCAAAGTGTTATGAATCGAGTCAAGG
*
11241903 TTGAGTAAGTTCTTCTCATGAATTCTC
66 TTGAATAAGTTCTTCTCATGAATTCTC
* * *
11241930 TACTGGAAATGTTTGTCCCTC-ATGTGAGGCATCACTGATTCGAAGTGTTAAGAATCGA-TCAA
1 TACTGGAAATGTTGGTCCCTCGA-GTGAGGCATCACTGATTCAAAGTGTTATGAATCGAGTCAA
11241992 AGGAAATGTG
Statistics
Matches: 138, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
91 5 0.04
92 133 0.96
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (92 bp):
TACTGGAAATGTTGGTCCCTCGAGTGAGGCATCACTGATTCAAAGTGTTATGAATCGAGTCAAGG
TTGAATAAGTTCTTCTCATGAATTCTC
Found at i:11242336 original size:39 final size:39
Alignment explanation
Indices: 11242259--11242782 Score: 782
Period size: 39 Copynumber: 13.5 Consensus size: 39
11242249 GTTTTAAGAA
* * *
11242259 AAACAATCTCAAGTGAGAT-AAATCTTCTATTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242297 AAACTATCTCAAGCAAGATAAAATCTTCTGTTTCCAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242336 AAATTATCTCTAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
11242375 AAACTATCTCAAGCGATATAAAATCTTATGTTTCGAGTA
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
11242414 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
11242453 AAACTATCTCAAGCGAGATAAAATCTTATGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * * *
11242492 AAACCATCTCAAGCAAGGTAAAATATTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
11242531 AAACTATCTAAAGCGAGATAAAATCTTATGTTTTGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242570 AAACTATCTCAAGCAAGATAAAATCTTCTGTTTCAAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
11242609 AAACTATCTCAAGGGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242648 AAACTATCTCAAGGGAGATAAAATATTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242687 AAACTATCTCAAGTGAGATAAAATCTTCTGTTTCAAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
11242726 AAA-TATCTCAAGCGAGATAAAATCTTTTATTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
11242764 AAACTATCTCAGGCGAGAT
1 AAACTATCTCAAGCGAGAT
11242783 GAATTTTGTT
Statistics
Matches: 437, Mismatches: 47, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
38 50 0.11
39 387 0.89
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (39 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
Found at i:11242430 original size:19 final size:20
Alignment explanation
Indices: 11242408--11242475 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
11242398 TCTTATGTTT
11242408 CGAG-TAAAACTATCTCAAG
1 CGAGATAAAACTATCTCAAG
****
11242427 CGAGATAAAATCT-TCTGTTT
1 CGAGATAAAA-CTATCTCAAG
*
11242447 CGAG-TGAAACTATCTCAAG
1 CGAGATAAAACTATCTCAAG
11242466 CGAGATAAAA
1 CGAGATAAAA
11242476 TCTTATGTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 7
0.67 0.19 0.13
Matches are distributed among these distances:
18 2 0.06
19 15 0.43
20 16 0.46
21 2 0.06
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (20 bp):
CGAGATAAAACTATCTCAAG
Found at i:11242856 original size:76 final size:76
Alignment explanation
Indices: 11242755--11242976 Score: 286
Period size: 76 Copynumber: 2.9 Consensus size: 76
11242745 AAATCTTTTA
* * *
11242755 TTTCGAGT-GAAACTATCTCAGGCGAGATGAATTTTGTTTTAAGAAAAACAATATGTAGTGAACT
1 TTTCGAGTAAAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAAAAACAATATGTAGTGAAAT
*
11242819 GAAATGCCTTG
66 GAAATGCATTG
* *
11242830 TTTTGAGTAAAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATATGTAGTGAAAT
1 TTTCGAGTAAAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAAAAACAATATGTAGTGAAAT
*
11242895 GAAATGTATTG
66 GAAATGCATTG
** ** * * *
11242906 TTTCGAGTAAAAACCGTCTCAAGCGAGACAAAGTTTTTTTTTAAGAAAAACAATCT-TAAGTGAG
1 TTTCGAGTAAAAACTATCTCAAGCGAGATGAA-TTTTGTTTTAAGAAAAACAATATGT-AGTGAA
11242970 ATGAAAT
64 ATGAAAT
11242977 TTCATATTAA
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
75 7 0.05
76 89 0.70
77 32 0.25
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (76 bp):
TTTCGAGTAAAAACTATCTCAAGCGAGATGAATTTTGTTTTAAGAAAAACAATATGTAGTGAAAT
GAAATGCATTG
Found at i:11242897 original size:36 final size:36
Alignment explanation
Indices: 11242781--11242897 Score: 117
Period size: 36 Copynumber: 3.1 Consensus size: 36
11242771 CTCAGGCGAG
*
11242781 ATGAATTTTGTTTTAAGAAAAACAATATGTAGTGAA
1 ATGAATCTTGTTTTAAGAAAAACAATATGTAGTGAA
* * * * ** * *
11242817 CTGAAATGCCTTGTTTTGAGTAAAAACTATCTCAAGCGAG
1 ATG-AAT--CTTGTTTTAAG-AAAAACAATATGTAGTGAA
11242857 ATGAATCTTGTTTTAAGAAAAACAATATGTAGTGAA
1 ATGAATCTTGTTTTAAGAAAAACAATATGTAGTGAA
11242893 ATGAA
1 ATGAA
11242898 ATGTATTGTT
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
36 20 0.33
37 13 0.22
39 12 0.20
40 15 0.25
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (36 bp):
ATGAATCTTGTTTTAAGAAAAACAATATGTAGTGAA
Found at i:11265681 original size:164 final size:165
Alignment explanation
Indices: 11265410--11265738 Score: 651
Period size: 164 Copynumber: 2.0 Consensus size: 165
11265400 AACATTCTGT
11265410 TGATCGATACTTTGGAGCAAAACCCGAATTACATCAAGTTCACGAAGGAAGTTCTTTCCAAAAAG
1 TGATCGATACTTTGGAGCAAAACCCGAATTACATCAAGTTCACGAAGGAAGTTCTTTCCAAAAAG
11265475 TGAAAACTTGGTGAATTTGAAACTATTGTACTCATTGAAGGGTGCAGTACCATGG-TGCGAGTAG
66 TGAAAACTTGGTGAATTTGAAACTATTGTACTCATTGAAGGGTGCAGTACCATGGCTGCGAGTAG
11265539 ATTGCCACCAAAATTAAAGGCTCCAGGGATTTTTA
131 ATTGCCACCAAAATTAAAGGCTCCAGGGATTTTTA
11265574 TGATCGATACTTTGGAGCAAAACCCGAATTACATCAAGTTCACGAAGGAAGTTCTTTCCAAAAAG
1 TGATCGATACTTTGGAGCAAAACCCGAATTACATCAAGTTCACGAAGGAAGTTCTTTCCAAAAAG
11265639 TGAAAACTTGGTGAATTTGAAACTATTGTACTCATTGAAGGGTGCAGTACCATGGCTGCGAGTAG
66 TGAAAACTTGGTGAATTTGAAACTATTGTACTCATTGAAGGGTGCAGTACCATGGCTGCGAGTAG
11265704 ATTGCCACCAAAATTAAAGGCTCCAGGGATTTTTA
131 ATTGCCACCAAAATTAAAGGCTCCAGGGATTTTTA
11265739 CTATCCCTTG
Statistics
Matches: 164, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
164 120 0.73
165 44 0.27
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (165 bp):
TGATCGATACTTTGGAGCAAAACCCGAATTACATCAAGTTCACGAAGGAAGTTCTTTCCAAAAAG
TGAAAACTTGGTGAATTTGAAACTATTGTACTCATTGAAGGGTGCAGTACCATGGCTGCGAGTAG
ATTGCCACCAAAATTAAAGGCTCCAGGGATTTTTA
Found at i:11267520 original size:49 final size:48
Alignment explanation
Indices: 11267467--11267628 Score: 236
Period size: 49 Copynumber: 3.3 Consensus size: 48
11267457 TTTTGTGTCG
* *
11267467 AAATGCACCGTTATGTATTTAACTTGCATTAGTGGCATCTTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCA-CTTTCTGCCAA
* *
11267516 AAATGCA-CTTTAAGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCA-CTTTCTGCCAA
* *
11267564 AAATGCACCATTATGCATTTAACTTGCATTAGTGACACATTTTTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCAC-TTTCTGCCAA
11267613 AAATGCACCATTATGC
1 AAATGCACCATTATGC
11267629 CAAAAATGCA
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
48 45 0.44
49 58 0.56
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (48 bp):
AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACTTTCTGCCAA
Found at i:11267631 original size:19 final size:19
Alignment explanation
Indices: 11267607--11267643 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11267597 GACACATTTT
11267607 TGCCAAAAATGCACCATTA
1 TGCCAAAAATGCACCATTA
11267626 TGCCAAAAATGCACCATT
1 TGCCAAAAATGCACCATT
11267644 TGCATTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.27, G:0.11, T:0.22
Consensus pattern (19 bp):
TGCCAAAAATGCACCATTA
Found at i:11267678 original size:67 final size:68
Alignment explanation
Indices: 11267549--11267693 Score: 238
Period size: 67 Copynumber: 2.1 Consensus size: 68
11267539 TGCATTAGTG
* * *
11267549 GCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATTAGTGACACATTTTTGCCAAA
1 GCACCATTATGCCAAAAATGCACCATTATGCATTTAACTTGCATTAGTGACACATTTATGCCAAA
11267614 AAT
66 AAT
* *
11267617 GCACCATTATGCCAAAAATGCACCATT-TGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAA
1 GCACCATTATGCCAAAAATGCACCATTATGCATTTAACTTGCATTAGTGACACATTTATGCCAAA
11267681 AAT
66 AAT
11267684 GCACCATTAT
1 GCACCATTAT
11267694 ACATTTAACT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
67 47 0.65
68 25 0.35
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (68 bp):
GCACCATTATGCCAAAAATGCACCATTATGCATTTAACTTGCATTAGTGACACATTTATGCCAAA
AAT
Found at i:11267717 original size:49 final size:49
Alignment explanation
Indices: 11267617--11267890 Score: 390
Period size: 49 Copynumber: 5.6 Consensus size: 49
11267607 TGCCAAAAAT
* * *
11267617 GCACCATTATGCCAAAAATGCACCATT-TGCATTTAACTTGCATTAGTG
1 GCACCTTTCTGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
*
11267665 GCACCTTTATGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
1 GCACCTTTCTGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
* * *
11267714 GCACCTTTCTGCAAAAAATACACCATTATGCATTTAACTTGCATTAGTG
1 GCACCTTTCTGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
* *
11267763 GCACCTTTCTACCAAAAATGCACCATTATGCATTTAACTTGCATTAGTG
1 GCACCTTTCTGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
* * * *
11267812 ACACATTTCTTCCAAAAATGCACCTTTA-AGCATTTAACTTGCATTAGTG
1 GCACCTTTCTGCCAAAAATGCACCATTATA-CATTTAACTTGCATTAGTG
* *
11267861 GCACCCTTCTGCAAAAAATGCACCATTATA
1 GCACCTTTCTGCCAAAAATGCACCATTATA
11267891 AAAATATATC
Statistics
Matches: 203, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
48 26 0.13
49 176 0.87
50 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (49 bp):
GCACCTTTCTGCCAAAAATGCACCATTATACATTTAACTTGCATTAGTG
Found at i:11267731 original size:116 final size:115
Alignment explanation
Indices: 11267510--11267744 Score: 373
Period size: 116 Copynumber: 2.0 Consensus size: 115
11267500 GGCATCTTTC
*
11267510 TGCCAAAAATGCACTTTAAGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCAT
1 TGCCAAAAATGCACTTT-AGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACCAT
* * * *
11267575 TATGCATTTAACTTGCATTAGTGACACATTTTTGCCAAAAATGCACCATTA
65 TATACATTTAACTTGCATTAGTGACACATTTCTGCAAAAAATACACCATTA
11267626 TGCCAAAAATGCACCATTT-GCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACCA
1 TGCCAAAAATGCA-C-TTTAGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACCA
* *
11267690 TTATACATTTAACTTGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTA
64 TTATACATTTAACTTGCATTAGTGACACATTTCTGCAAAAAATACACCATTA
11267742 TGC
1 TGC
11267745 ATTTAACTTG
Statistics
Matches: 110, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
116 106 0.96
117 1 0.01
118 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (115 bp):
TGCCAAAAATGCACTTTAGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACCATT
ATACATTTAACTTGCATTAGTGACACATTTCTGCAAAAAATACACCATTA
Found at i:11267740 original size:165 final size:165
Alignment explanation
Indices: 11267467--11267793 Score: 523
Period size: 165 Copynumber: 2.0 Consensus size: 165
11267457 TTTTGTGTCG
* * * * *
11267467 AAATGCACCGTTATGTATTTAACTTGCATTAGTGGCATCTTTCTGCCAAAAATGCACTTTAAGCA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACATTAAGCA
* *
11267532 TTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATTAGT
66 TTTAACTTGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTATGCATTTAACTTGCATTAGT
* *
11267597 GACACATTTTTGCCAAAAATGCACCATTATGCCAA
131 GACACATTTCTACCAAAAATGCACCATTATGCCAA
11267632 AAATGCACCATT-TGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACCATTATA-
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCA-CATTA-AG
11267695 CATTTAACTTGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTATGCATTTAACTTGCATTA
64 CATTTAACTTGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTATGCATTTAACTTGCATTA
* *
11267760 GTGGCACCTTTCTACCAAAAATGCACCATTATGC
129 GTGACACATTTCTACCAAAAATGCACCATTATGC
11267794 ATTTAACTTG
Statistics
Matches: 149, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
164 40 0.27
165 108 0.72
166 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (165 bp):
AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACCTTTATGCCAAAAATGCACATTAAGCA
TTTAACTTGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTATGCATTTAACTTGCATTAGT
GACACATTTCTACCAAAAATGCACCATTATGCCAA
Found at i:11270917 original size:17 final size:18
Alignment explanation
Indices: 11270895--11270942 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
11270885 TGTATGCTTA
*
11270895 TATATT-GTTTATTTCAT
1 TATATTAGTTTATCTCAT
*
11270912 TATATTATTTTATCTCAT
1 TATATTAGTTTATCTCAT
*
11270930 TCATATTAATTTA
1 T-ATATTAGTTTA
11270943 ATTTTTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 6 0.23
18 10 0.38
19 10 0.38
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (18 bp):
TATATTAGTTTATCTCAT
Found at i:11270929 original size:18 final size:19
Alignment explanation
Indices: 11270902--11270942 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
11270892 TTATATATTG
* *
11270902 TTTATTTCATT-ATATTAT
1 TTTATCTCATTCATATTAA
11270920 TTTATCTCATTCATATTAA
1 TTTATCTCATTCATATTAA
11270939 TTTA
1 TTTA
11270943 ATTTTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATCTCATTCATATTAA
Found at i:11272074 original size:49 final size:49
Alignment explanation
Indices: 11272002--11272412 Score: 416
Period size: 49 Copynumber: 8.2 Consensus size: 49
11271992 TTAAACTATG
* ** *
11272002 AGTGGCACCATTTATGCC-AAAATGCACTGTTATACATTTAACTTGCATT
1 AGTGGCACC-TTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
* *
11272051 AGTGGCACCTTTCTGCCAAAAATGCACCTTTAAGCATTTAACTTGCATT
1 AGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
* * * *
11272100 AATGGCATCTTTCTGCAAAAACAAAAA-GCACCGTTATGTATTTAACTTGCATT
1 AGTGGCACCTTTCTGC-----CAAAAATGCACCATTATGCATTTAACTTGCATT
* * * * *
11272153 AGTTGCACATTTCTGCAAAAAAAAAATGTACCATTGTGCATTTAACTTGCATT
1 AGTGGCACCTTTCTGC----CAAAAATGCACCATTATGCATTTAACTTGCATT
* * * * *
11272206 AGTGACATCTTTATGCCAAAAATGCACCTTTAAGCATTTAACTTGCATT
1 AGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
* * * *
11272255 AGTGACACCTTTCTAG-AAAAAATGCACCATTATGCCTATAACTTGCATT
1 AGTGGCACCTTTCT-GCCAAAAATGCACCATTATGCATTTAACTTGCATT
* *
11272304 AGTGGCATCTTTTTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
1 AGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
* * * *
11272353 AATGGGACCTTTCTGCTAAAAATGCACAATTATGCA-TTAACTTGCATT
1 AGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
*
11272401 TGTGGCACCTTT
1 AGTGGCACCTTT
11272413 AAACATTTAA
Statistics
Matches: 302, Mismatches: 51, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
48 29 0.10
49 189 0.63
50 1 0.00
52 9 0.03
53 68 0.23
54 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (49 bp):
AGTGGCACCTTTCTGCCAAAAATGCACCATTATGCATTTAACTTGCATT
Found at i:11274485 original size:3 final size:3
Alignment explanation
Indices: 11274477--11274539 Score: 83
Period size: 3 Copynumber: 21.0 Consensus size: 3
11274467 GTTTTAGTTT
* **
11274477 TTA TTA TTA -TA TTA TTA TTA TTA TTA TCA TTA CAA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11274524 TTA TTA TTA TATA TTA
1 TTA TTA TTA T-TA TTA
11274540 GATACTAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 2 0.04
3 47 0.90
4 3 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:11274662 original size:42 final size:42
Alignment explanation
Indices: 11274602--11274714 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
11274592 TCTGAATTCT
* *
11274602 CGTGTTTGTTTCACGTAATTTGTTTTCTGAAAAATATTTTCC
1 CGTGTTTGTTTCACGTAATTAGTTTTCCGAAAAATATTTTCC
* *
11274644 CGTGTTTGTTTCATGTAATTAGTTTTCCGAAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTAGTTTTCCGAAAAATATTTTCC
* *
11274686 CGTGTTTGTTTCACCTAATTGGTTTTCCG
1 CGTGTTTGTTTCACGTAATTAGTTTTCCG
11274715 GAATGTAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTAGTTTTCCGAAAAATATTTTCC
Found at i:11275047 original size:19 final size:19
Alignment explanation
Indices: 11275025--11275077 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
11275015 TAAAAAAAGT
*
11275025 ATATATTTAATAATGAATA
1 ATATATTTAATAATAAATA
*
11275044 ATATTATTTATATATTTAAATA
1 ATA-TATTTA-ATA-ATAAATA
11275066 ATAT-TTTAATAA
1 ATATATTTAATAA
11275078 AGATATTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.21
20 10 0.36
21 4 0.14
22 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATATATTTAATAATAAATA
Found at i:11275098 original size:23 final size:23
Alignment explanation
Indices: 11275072--11275116 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
11275062 AATAATATTT
11275072 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
11275095 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
11275117 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:11275508 original size:21 final size:21
Alignment explanation
Indices: 11275484--11275526 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
11275474 AGAATTTAAA
**
11275484 TTCCAGTAATTCATTTTCCAG
1 TTCCAGTAATTCAAATTCCAG
11275505 TTCCAGTAATTCAAATTCCAG
1 TTCCAGTAATTCAAATTCCAG
11275526 T
1 T
11275527 AATTCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (21 bp):
TTCCAGTAATTCAAATTCCAG
Found at i:11275522 original size:36 final size:35
Alignment explanation
Indices: 11275470--11275538 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 35
11275460 GTAATTCATT
*
11275470 TTCCAGAATTTAAATTCCAGTAATTCATTTTCCAG
1 TTCCAGAATTCAAATTCCAGTAATTCATTTTCCAG
11275505 TTCCAGTAATTCAAATTCCAGTAATTCATTTTCC
1 TTCCAG-AATTCAAATTCCAGTAATTCATTTTCC
11275539 GAAAAATCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 6 0.19
36 26 0.81
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (35 bp):
TTCCAGAATTCAAATTCCAGTAATTCATTTTCCAG
Found at i:11275538 original size:15 final size:15
Alignment explanation
Indices: 11275460--11275505 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
11275450 TTCTAGAAAT
11275460 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
* **
11275475 G-AATTTAAATTCCA
1 GTAATTCATTTTCCA
11275489 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
11275504 GT
1 GT
11275506 TCCAGTAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:11276787 original size:13 final size:13
Alignment explanation
Indices: 11276771--11276798 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
11276761 ATTAATTAAC
11276771 TTTATTATATATT
1 TTTATTATATATT
11276784 TTTATTATATATT
1 TTTATTATATATT
11276797 TT
1 TT
11276799 GTTCATGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTATTATATATT
Found at i:11283669 original size:45 final size:47
Alignment explanation
Indices: 11283617--11283705 Score: 146
Period size: 45 Copynumber: 1.9 Consensus size: 47
11283607 TTTAATAAAT
11283617 GCATGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT-TGAACAA
1 GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAA
* *
11283662 GCATGCGAATTAGATATCATGTGGTTAGGATTTATTTTTGTGAA
1 GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAA
11283706 TAACAAAGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 27 0.68
46 9 0.22
47 4 0.10
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (47 bp):
GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAA
Found at i:11296709 original size:42 final size:42
Alignment explanation
Indices: 11296647--11296870 Score: 164
Period size: 42 Copynumber: 5.1 Consensus size: 42
11296637 ACTTAGTAAG
* *
11296647 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTAGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
*
11296689 TCCTTAGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTAGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
* ** *** * * **
11296731 TCCTTAGAGTAATTTGTAAGCCTTCACGGAAG-A-GTAGTGAAGCAAA
1 TCCTTAGGGCCATCAATAAGTCTT-TC-G-AGCATG-A-TG-ATTAAA
* * * * *
11296777 CCCATCAGTAAGTGCCATCAGTAAGTCTTTCGAGCATGATGATGAAG
1 TCC-T---T-AGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
*
11296824 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTAGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
11296866 TCCTT
1 TCCTT
11296871 CGGGAAATTT
Statistics
Matches: 140, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
42 94 0.67
43 3 0.02
44 3 0.02
45 4 0.03
46 7 0.05
47 6 0.04
48 4 0.03
49 3 0.02
50 3 0.02
51 13 0.09
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (42 bp):
TCCTTAGGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
Found at i:11296796 original size:13 final size:13
Alignment explanation
Indices: 11296778--11296802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11296768 TGAAGCAAAC
11296778 CCATCAGTAAGTG
1 CCATCAGTAAGTG
11296791 CCATCAGTAAGT
1 CCATCAGTAAGT
11296803 CTTTCGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (13 bp):
CCATCAGTAAGTG
Found at i:11296830 original size:22 final size:21
Alignment explanation
Indices: 11296798--11296872 Score: 64
Period size: 22 Copynumber: 3.5 Consensus size: 21
11296788 GTGCCATCAG
*
11296798 TAAGTCTTTCGAGCATGATGA
1 TAAGTCCTTCGAGCATGATGA
* *
11296819 TGAAGTCCTTCGGGCCATCA--A
1 T-AAGTCCTTCGAG-CATGATGA
*
11296840 TAAGTCTTTCGAGCATGATGA
1 TAAGTCCTTCGAGCATGATGA
*
11296861 TTAAATCCTTCG
1 -TAAGTCCTTCG
11296873 GGAAATTTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
19 4 0.10
20 10 0.24
21 4 0.10
22 19 0.46
23 4 0.10
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (21 bp):
TAAGTCCTTCGAGCATGATGA
Found at i:11296850 original size:20 final size:20
Alignment explanation
Indices: 11296790--11296853 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
11296780 ATCAGTAAGT
*
11296790 GCCATCAGTAAGTCTTTCGA
1 GCCATCAATAAGTCTTTCGA
* * *
11296810 G-CATGATGATGAAGTCCTTCGG
1 GCCATCA--AT-AAGTCTTTCGA
11296832 GCCATCAATAAGTCTTTCGA
1 GCCATCAATAAGTCTTTCGA
11296852 GC
1 GC
11296854 ATGATGATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
19 4 0.12
20 12 0.36
21 3 0.09
22 10 0.30
23 4 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (20 bp):
GCCATCAATAAGTCTTTCGA
Found at i:11296871 original size:42 final size:42
Alignment explanation
Indices: 11296790--11296996 Score: 174
Period size: 42 Copynumber: 5.0 Consensus size: 42
11296780 ATCAGTAAGT
* *
11296790 GCCATCAGTAAGTCTTTCGAGCATGATGATGAAGTCCTTCGG
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
*
11296832 GCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
** ** * * * * * * ***
11296874 GAAATTTGTAAG-CCTTC-ACGGAAGA-GTAGTGAAGCAAAC--
1 GCCATCAGTAAGTCTTTCGA-GCATGATG-ATTAAATCCTTCGG
* * * *
11296913 -CCATCAGCAAGTCTTTCGAGCATGATGATGAAGTCCTTCGA
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
11296954 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
11296996 G
1 G
11296997 TAATTTGTAA
Statistics
Matches: 120, Mismatches: 37, Indels: 16
0.69 0.21 0.09
Matches are distributed among these distances:
38 6 0.05
39 12 0.10
40 4 0.03
41 14 0.12
42 84 0.70
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGG
Done.