Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 57 of 73
Found at i:13362297 original size:15 final size:15
Alignment explanation
Indices: 13362279--13362329 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
13362269 AACTATATAC
13362279 TATATTAATATAAAT
1 TATATTAATATAAAT
*
13362294 TATAGTTAAGA-AAAT
1 TATA-TTAATATAAAT
* *
13362309 TAACATTAATATAAAC
1 T-ATATTAATATAAAT
13362325 TATAT
1 TATAT
13362330 AGTACATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
15 17 0.61
16 11 0.39
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (15 bp):
TATATTAATATAAAT
Found at i:13362363 original size:36 final size:36
Alignment explanation
Indices: 13362318--13362400 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
13362308 TTAACATTAA
*
13362318 TATAAACTATATAGTACATTAATATAAACTATAGGT
1 TATAAACTATATAGTACACTAATATAAACTATAGGT
* * *
13362354 TATGAACTATATAGTACACTAATATAAACTATTGTT
1 TATAAACTATATAGTACACTAATATAAACTATAGGT
13362390 TATAAACTATA
1 TATAAACTATA
13362401 GGTTACATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (36 bp):
TATAAACTATATAGTACACTAATATAAACTATAGGT
Found at i:13362475 original size:31 final size:31
Alignment explanation
Indices: 13362440--13362508 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
13362430 TATAGATTGT
*
13362440 ATATATACATAATATATATTCTATAGGTTAC
1 ATATATACATAATACATATTCTATAGGTTAC
*
13362471 ATATACACATAATACATATTCTATAGGTTAC
1 ATATATACATAATACATATTCTATAGGTTAC
13362502 ATATATA
1 ATATATA
13362509 GTTTACAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (31 bp):
ATATATACATAATACATATTCTATAGGTTAC
Found at i:13362504 original size:16 final size:16
Alignment explanation
Indices: 13362455--13362505 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
13362445 TACATAATAT
13362455 ATATTCTATAGGTTAC
1 ATATTCTATAGGTTAC
* * *
13362471 ATATACACATA--ATAC
1 ATATTC-TATAGGTTAC
13362486 ATATTCTATAGGTTAC
1 ATATTCTATAGGTTAC
13362502 ATAT
1 ATAT
13362506 ATAGTTTACA
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
14 3 0.12
15 8 0.31
16 12 0.46
17 3 0.12
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGGTTAC
Found at i:13362562 original size:15 final size:16
Alignment explanation
Indices: 13362544--13362578 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
13362534 ATACATATCT
13362544 TATAGGTTATATATA-
1 TATAGGTTATATATAC
*
13362559 TATAGTTTATATATAC
1 TATAGGTTATATATAC
13362575 TATA
1 TATA
13362579 CATAGTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (16 bp):
TATAGGTTATATATAC
Found at i:13362568 original size:22 final size:19
Alignment explanation
Indices: 13362527--13362589 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 19
13362517 ATAAATAGAT
13362527 TATATATATACATA-TCTTA
1 TATATATATACATAGT-TTA
*
13362546 TAGGTTATATATATATAGTTTA
1 TA---TATATATACATAGTTTA
13362568 TATATACTATACATAGTTTA
1 TATATA-TATACATAGTTTA
13362588 TA
1 TA
13362590 CATACATGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 6 0.16
20 14 0.38
22 16 0.43
23 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (19 bp):
TATATATATACATAGTTTA
Found at i:13362578 original size:20 final size:20
Alignment explanation
Indices: 13362551--13362594 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
13362541 TCTTATAGGT
*
13362551 TATA-TATATATAGTTTATA
1 TATACTATACATAGTTTATA
13362570 TATACTATACATAGTTTATA
1 TATACTATACATAGTTTATA
*
13362590 CATAC
1 TATAC
13362595 ATGTACTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (20 bp):
TATACTATACATAGTTTATA
Found at i:13362619 original size:35 final size:36
Alignment explanation
Indices: 13362580--13362653 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
13362570 TATACTATAC
*
13362580 ATAGTTT-ATACATACATGTACTATAAGTTACATAT
1 ATAGTTTAATACATACATATACTATAAGTTACATAT
** *
13362615 ATAGTTTACATGTATACATATACTATAGGTTACATAT
1 ATAGTTTA-ATACATACATATACTATAAGTTACATAT
13362652 AT
1 AT
13362654 TAACTATTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 7 0.21
37 26 0.79
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (36 bp):
ATAGTTTAATACATACATATACTATAAGTTACATAT
Found at i:13362794 original size:2 final size:2
Alignment explanation
Indices: 13362787--13362968 Score: 67
Period size: 2 Copynumber: 90.5 Consensus size: 2
13362777 GACTATAGGT
* * * *
13362787 TA TA TA TA TA GTT TA TA TA AA T- TA TA TA TA AA CTA TA AA T- TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* *
13362829 CA TA TA TA TA TA TA TA TA TA TA TA TA GTT TA TA -A TA -A CTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA
* * * *
13362871 TA GTT TA TA CA TA AA TA TA GTA TA T- TA -A TA TA AA T- TA TA T-
1 TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
13362911 TT TA TA AA CTA TA TA CTT TA TA TA GTT TA TA TA TA TA -A TT TA
1 TA TA TA TA -TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA
*
13362953 TA TA TA CTA TA CA TA T
1 TA TA TA -TA TA TA TA T
13362969 TTTATACATA
Statistics
Matches: 130, Mismatches: 31, Indels: 38
0.65 0.16 0.19
Matches are distributed among these distances:
1 9 0.07
2 109 0.84
3 12 0.09
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:13362843 original size:108 final size:106
Alignment explanation
Indices: 13362648--13362861 Score: 238
Period size: 108 Copynumber: 1.9 Consensus size: 106
13362638 TATAGGTTAC
*
13362648 ATATATTAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATATA
1 ATATATCAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATATA
* * *
13362713 TCGATTATCAATTGTGTCTATATATATATAGTTTATATAAATT
66 -C-ATTATCAATTATATATATATATATATAGTTTATATAAATT
**
13362756 ATATATCAACTATTGTTTATAGACTATAGGTTATATA-TATAGTTTATATAAATTATATATAAAC
1 ATATATCAACTATTGTTTATAGACTATAGGTTA-A-AGT-TA-CATATAT-AATT-TATATAAAC
13362820 TATA-A-ATTA-CATATATATATATATATATATATATAGTTTATA
60 TATATACATTATC--A-AT-TATATATATATATATATAGTTTATA
13362862 ATAACTATAT
Statistics
Matches: 90, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
108 33 0.37
109 6 0.07
110 4 0.04
111 7 0.08
112 27 0.30
113 13 0.14
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (106 bp):
ATATATCAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATATA
CATTATCAATTATATATATATATATATAGTTTATATAAATT
Found at i:13362895 original size:58 final size:56
Alignment explanation
Indices: 13362787--13362932 Score: 142
Period size: 58 Copynumber: 2.6 Consensus size: 56
13362777 GACTATAGGT
* * *
13362787 TATATATATAGTTTATATAAAT-TATATATAAACTATAAATTACATATATATATATATA
1 TATATATATAGTTTATATAACTATATATTTATACTATAAATTA-ATATATAT-TA-ATA
13362845 TATATATATAGTTTATAATAACTATATAGTTTATAC-ATAAA-T-ATAGTATATTAATA
1 TATATATATAGTTTAT-ATAACTATATA-TTTATACTATAAATTAATA-TATATTAATA
* *
13362901 TAAAT-TATATTTTATA-AACTATATACTTTATA
1 TATATATATAGTTTATATAACTATATA-TTTATA
13362933 TAGTTTATAT
Statistics
Matches: 78, Mismatches: 6, Indels: 13
0.80 0.06 0.13
Matches are distributed among these distances:
53 15 0.19
54 1 0.01
55 9 0.12
56 7 0.09
57 5 0.06
58 21 0.27
59 6 0.08
60 9 0.12
61 5 0.06
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (56 bp):
TATATATATAGTTTATATAACTATATATTTATACTATAAATTAATATATATTAATA
Found at i:13362931 original size:53 final size:51
Alignment explanation
Indices: 13362827--13362932 Score: 126
Period size: 53 Copynumber: 2.0 Consensus size: 51
13362817 AACTATAAAT
* * *
13362827 TACATATATATATATATATATATATATAGTTTATAATAACTATATAGTTTA
1 TACATAAATATATATATATATAAATATAGTTTATAATAACTATATACTTTA
*
13362878 TACATAAATATAGTATATTAATATAAATTATATTTTAT-A-AACTATATACTTTA
1 TACATAAATATA-TATA-T-ATATAAA-TATAGTTTATAATAACTATATACTTTA
13362931 TA
1 TA
13362933 TAGTTTATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
51 11 0.23
52 4 0.09
53 16 0.34
54 7 0.15
55 9 0.19
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (51 bp):
TACATAAATATATATATATATAAATATAGTTTATAATAACTATATACTTTA
Found at i:13362947 original size:13 final size:13
Alignment explanation
Indices: 13362929--13362958 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13362919 CTATATACTT
*
13362929 TATATAGTTTATA
1 TATATAATTTATA
13362942 TATATAATTTATA
1 TATATAATTTATA
13362955 TATA
1 TATA
13362959 CTATACATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
TATATAATTTATA
Found at i:13362963 original size:20 final size:19
Alignment explanation
Indices: 13362787--13362974 Score: 81
Period size: 20 Copynumber: 9.9 Consensus size: 19
13362777 GACTATAGGT
*
13362787 TATATATATAGTTTATATA
1 TATATATATAATTTATATA
* ** *
13362806 AATTATATATAAACTATAAA
1 TA-TATATATAATTTATATA
* *
13362826 T-TACATATATATATATATA
1 TATATATATA-ATTTATATA
*
13362845 TATATATATAGTTTATA-A
1 TATATATATAATTTATATA
* *
13362863 TA-ACTATATAGTTTATACA
1 TATA-TATATAATTTATATA
*
13362882 TAAATATAGT-ATATTA-ATA
1 TATATATA-TAAT-TTATATA
*
13362901 TAAAT-TAT-ATTT-TATA
1 TATATATATAATTTATATA
*
13362917 -A-ACTATATACTTTATATA
1 TATA-TATATAATTTATATA
13362935 GTTTATATATATAATTTATATA
1 ---TATATATATAATTTATATA
* *
13362957 TACTATACATATTTTATA
1 TA-TATATATAATTTATA
13362975 CATACATGTA
Statistics
Matches: 131, Mismatches: 19, Indels: 37
0.70 0.10 0.20
Matches are distributed among these distances:
14 1 0.01
15 2 0.02
16 8 0.06
17 7 0.05
18 29 0.22
19 30 0.23
20 38 0.29
22 15 0.11
23 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (19 bp):
TATATATATAATTTATATA
Found at i:13362995 original size:385 final size:396
Alignment explanation
Indices: 13362544--13363383 Score: 1315
Period size: 385 Copynumber: 2.1 Consensus size: 396
13362534 ATACATATCT
13362544 TATAGGTTATATATATATAGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTT
1 TATA-GTT-TATATATATAGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTT
13362609 ACATATATAGTTTACATGTATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTA
64 ACATATATAGTTTACATGTATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTA
*
13362674 TAGGTTAAAGTTAC-ATAT-A-TA-ATTTATATAAACTATATATCGATTATCAATTGTGTC-TAT
129 TAGGTTAAAGTTACTATATAACTATATTTATATAAACTATATATCGATTATCAACTGTGTCATAT
13362734 ATATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGT
194 ATATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGT
*
13362799 TTATATAAATTATATATAAAC-TATAAA-T-TACA-T-ATATATATATATATATATATATAGTTT
259 TTATATAAATTATATATAAACTTATAAACTATAAATTAATATATATATATATATATATATAGTTT
13362859 ATAATAAC-TATATAGTTTATACATAAATATAGTATATTAATATAAATTATATTTTATAAACTAT
324 ATAATAACATATATAGTTTATACATAAATATAGTATATTAATATAAATTATATTTTATAAACTAT
13362923 ATACTTTA
389 ATACTTTA
* *
13362931 TATAGTTTATATATATAATTTATATATACTATACATATTTTATACATACATGTACTATAAGTTAC
1 TATAGTTTATATATATAGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTAC
13362996 ATATATAGTTTACATGTATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTATA
66 ATATATAGTTTACATGTATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTATA
13363061 GGTTAAAGTTACATATATAATTTATATAAACTATTATTTATATAAACTATATATCGATTATCAAC
131 GGTTAAAGTTAC----------TATAT-AACTA-TATTTATATAAACTATATATCGATTATCAAC
13363126 TGTGTCTATATATATATATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATA
184 TGTGTC-----ATATATATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATA
13363191 GGTTATATATATAGTTTATATAAATTATATATAAACTATTTTTTATAAACTATAAATTACATATA
244 GGTTATATATATAGTTTATATAAATTATATATAAAC------TTATAAACTATAAATTA-ATATA
13363256 TATATATATATATATATAGTTTATAATAACTATATATAGTTTATACATAAATATAGTATATTAAT
302 TATATATATATATATATAGTTTATAATAAC-ATATATAGTTTATACATAAATATAGTATATTAAT
13363321 ATAAATTATATTTTATAAACTATATACTTTA
366 ATAAATTATATTTTATAAACTATATACTTTA
*
13363352 TATAGTTTATATATATAGTTTATATAAACTAT
1 TATAGTTTATATATATAGTTTATATATACTAT
13363384 TTATATAGTA
Statistics
Matches: 411, Mismatches: 6, Indels: 38
0.90 0.01 0.08
Matches are distributed among these distances:
385 133 0.32
386 3 0.01
387 4 0.01
396 4 0.01
398 1 0.00
399 2 0.00
401 35 0.09
407 89 0.22
414 6 0.01
415 1 0.00
416 3 0.01
417 1 0.00
419 35 0.09
421 94 0.23
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (396 bp):
TATAGTTTATATATATAGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTAC
ATATATAGTTTACATGTATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTATA
GGTTAAAGTTACTATATAACTATATTTATATAAACTATATATCGATTATCAACTGTGTCATATAT
ATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTT
ATATAAATTATATATAAACTTATAAACTATAAATTAATATATATATATATATATATATAGTTTAT
AATAACATATATAGTTTATACATAAATATAGTATATTAATATAAATTATATTTTATAAACTATAT
ACTTTA
Found at i:13363101 original size:16 final size:16
Alignment explanation
Indices: 13363080--13363110 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13363070 TACATATATA
13363080 ATTTATATAAACTATT
1 ATTTATATAAACTATT
13363096 ATTTATATAAACTAT
1 ATTTATATAAACTAT
13363111 ATATCGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTATATAAACTATT
Found at i:13363166 original size:54 final size:54
Alignment explanation
Indices: 13363097--13363229 Score: 142
Period size: 54 Copynumber: 2.5 Consensus size: 54
13363087 TAAACTATTA
* * * * * *
13363097 TTTATATAAACTATATATCGATTATCAACTGT-GTCTATATATATATATATATAG
1 TTTATATAAATTATATATCAACTATCAACTATAGACTATAGAT-TATATATATAG
**** *
13363151 TTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAG
1 TTTATATAAATTATATATCAACTATCAACTATAGACTATAGATTATATATATAG
*
13363205 TTTATATAAATTATATATAAACTAT
1 TTTATATAAATTATATATCAACTAT
13363230 TTTTTATAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 59 0.89
55 7 0.11
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (54 bp):
TTTATATAAATTATATATCAACTATCAACTATAGACTATAGATTATATATATAG
Found at i:13363230 original size:54 final size:54
Alignment explanation
Indices: 13363140--13363244 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
13363130 TCTATATATA
* *
13363140 TATATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGT
1 TATATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATAGGT
*
13363194 TATATATATAGTTTATATAAATTATATATAAACTATTTTTTATAAACTATA
1 TATATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATA
13363245 AATTACATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (54 bp):
TATATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATAGGT
Found at i:13363255 original size:54 final size:54
Alignment explanation
Indices: 13363143--13363273 Score: 176
Period size: 54 Copynumber: 2.5 Consensus size: 54
13363133 ATATATATAT
* * ** *
13363143 ATATATAGTTTATATAAATTATATATCAACTATTGTTTATAGACTATAGGTTAT
1 ATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATAAATTAC
*
13363197 ATATATAGTTTATATAAATTATATATAAACTATTTTTTATAAACTATAAATTAC
1 ATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATAAATTAC
* *
13363251 ATATATA-TATATATATA-TATATA
1 ATATATAGTTTATATAAATTATATA
13363274 GTTTATAATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 6 0.09
53 8 0.12
54 55 0.80
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (54 bp):
ATATATAGTTTATATAAATTATATATAAACTATTGTTTATAAACTATAAATTAC
Found at i:13363258 original size:2 final size:2
Alignment explanation
Indices: 13363251--13363422 Score: 56
Period size: 2 Copynumber: 84.5 Consensus size: 2
13363241 TATAAATTAC
*
13363251 AT AT AT AT AT AT AT AT AT AT AT AGT TT AT A- AT A- ACT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT
* * * *
13363293 AGT TT AT AC AT AA AT AT AGT AT AT -T A- AT AT AA AT -T AT AT -T
1 A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
13363333 TT AT AA ACT AT AT ACT TT AT AT AGT TT AT AT AT AT AGT TT AT AT
1 AT AT AT A-T AT AT A-T AT AT AT A-T AT AT AT AT AT A-T AT AT AT
* * *
13363377 AA ACT AT TT AT AT AGT A- AT AT AT GT ACT -T A- AT AT ACT AT AT
1 AT A-T AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT A-T AT AT
13363418 AT AT A
1 AT AT A
13363423 AAATATAGGC
Statistics
Matches: 124, Mismatches: 25, Indels: 42
0.65 0.13 0.22
Matches are distributed among these distances:
1 9 0.07
2 100 0.81
3 15 0.12
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:13363266 original size:130 final size:128
Alignment explanation
Indices: 13363033--13363273 Score: 296
Period size: 130 Copynumber: 1.9 Consensus size: 128
13363023 TATAGGTTAC
*
13363033 ATATATTAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATTAT
1 ATATATCAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATTAT
* * * *
13363098 TTATATAAACTATATATCGATTATCAACTGTGTCTATATATATATATATATAGTTTATATAAATT
66 TTATATAAACTATATA-C-ATTATCAAATATATATATATATATATATATATAGTTTATATAAATT
**
13363163 ATATATCAACTATTGTTTATAGACTATAGGTTATATA-TATAGTTTATATAAATTATATATAAAC
1 ATATATCAACTATTGTTTATAGACTATAGGTTA-A-AGT-TA-CATATAT-AATT-TATATAAAC
*
13363227 TATT-TTT-TATAAACTATA-A-ATTA-CATATATATATATATATATATATA
60 TATTATTTATATAAACTATATACATTATCAAATATATATATATATATATATA
13363274 GTTTATAATA
Statistics
Matches: 97, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
128 19 0.20
129 4 0.04
130 32 0.33
131 2 0.02
132 4 0.04
133 16 0.16
134 7 0.07
135 13 0.13
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (128 bp):
ATATATCAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATAATTTATATAAACTATTAT
TTATATAAACTATATACATTATCAAATATATATATATATATATATATATAGTTTATATAAATT
Found at i:13363291 original size:20 final size:21
Alignment explanation
Indices: 13363256--13363315 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
13363246 ATTACATATA
* *
13363256 TATATATATATATATATAGTT
1 TATACATAAATATATATAGTT
*
13363277 TATA-ATAACTATATATAGTT
1 TATACATAAATATATATAGTT
13363297 TATACATAAATATAGTATA
1 TATACATAAATATA-TATA
13363316 TTAATATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.53
21 12 0.35
22 4 0.12
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (21 bp):
TATACATAAATATATATAGTT
Found at i:13363368 original size:13 final size:13
Alignment explanation
Indices: 13363350--13363390 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
13363340 CTATATACTT
13363350 TATATAGTTTATA
1 TATATAGTTTATA
13363363 TATATAGTTTATA
1 TATATAGTTTATA
*
13363376 TAAACTA-TTTATA
1 TATA-TAGTTTATA
13363389 TA
1 TA
13363391 GTAATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 24 0.92
14 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:13363532 original size:2 final size:2
Alignment explanation
Indices: 13363527--13363576 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
13363517 TATTTTTCTT
13363527 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13363569 TA TA TA TA
1 TA TA TA TA
13363577 ATAAGTGTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13363559 original size:421 final size:403
Alignment explanation
Indices: 13362695--13363574 Score: 1002
Period size: 421 Copynumber: 2.1 Consensus size: 403
13362685 TACATATATA
* * *
13362695 ATTTATATAAACTATATATCGATTAT--C-A-AT-TGTGTCTATATATATATAGTTTATATAAAT
1 ATTTATATAAACTATATATC-ATTATAACTATATATATATATATATATATATAGTTTATATAAAT
13362755 TATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTTATATAAATTATATATAAAC
65 TATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTTATATAAATTATATATAAAC
*
13362820 TATAAATTACATATATATATATATATATATATATAGTTTATAATAACTATATAGTTTATACATAA
130 TATAAATTAAATATATATATATATATATATATATAGTTTATAATAACTATATAGTTTATACATAA
13362885 ATATAGTATATTAATATAAATTATATTTTATAAACTATATACTTTATATAGTTTATATATATAAT
195 ATATAGTATATTAATATAAATTATATTTTATAAACTATATACTTTATATAGTTTATATATATAAT
* * * * * * *
13362950 TTATATATACTATACATATTTTATACATACATGTACTATAAGTTACATATATAGTTTACATGTAT
260 TTATATAAACTATA-ATATTATATACATACATGTACTATAACTTACATATAAAATATACATGAAT
* * * *
13363015 ACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTATAGGTTAAAGTTACATATATA
324 ACATATACTATAGATTACATAAATTAACTATTGTTTATAAAC-ATAGGTTAAAGCTACATATATA
*
13363080 ATTTATATAAACTATT
388 ATATATATAAACTATT
* * *
13363096 ATTTATATAAACTATATATCGATTATCAACTGTGTCTATATATATATATATATAGTTTATATAAA
1 ATTTATATAAACTATATATC-ATTAT-AACTATATATATATATATATATATATAGTTTATATAAA
13363161 TTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTTATATAAATTATATATAAA
64 TTATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTTATATAAATTATATATAAA
13363226 CTATTTTTTATAAACTATAAATTACATATATATATATATATATATATAGTTTATAATAACTATAT
129 C-------TATAAA-T-TAAA-T--ATATATATATATATATATATATAGTTTATAATAAC--TAT
13363291 ATAGTTTATACATAAATATAGTATATTAATATAAATTATATTTTATAAACTATATACTTTATATA
180 ATAGTTTATACATAAATATAGTATATTAATATAAATTATATTTTATAAACTATATACTTTATATA
* * * *
13363356 GTTTATATATATAGTTTATATAAACTAT-TTA-TATAGTA-ATATATGTACTTAATATACTATAT
245 GTTTATATATATAATTTATATAAACTATAATATTATA-TACATACATGTAC-T-ATA-ACT-TAC
* ** *
13363418 ATATAAAATATAGGCATGAAT-CTTATA-TATTTATATATATAAATT-ACATAATT-TATTAATA
305 ATATAAAATATA--CATGAATACATATACTATAGAT-TACATAAATTAAC-T-ATTGT-TT-ATA
* * *
13363479 AAC-TAGGTGTAAA-CTACATATAAACTACATATATTATATATTTTT
363 AACATAGGT-TAAAGCTACATAT--A-TA-ATATA-TATAAACTATT
* *
13363524 CTTTATATATA-TATATAT-ATATATATA-TATATATATATATATATATATATA
1 ATTTATATAAACTATATATCAT-TATA-ACTATATATATATATATATATATATA
13363575 TAATAAGTGT
Statistics
Matches: 405, Mismatches: 34, Indels: 56
0.82 0.07 0.11
Matches are distributed among these distances:
401 26 0.06
404 1 0.00
406 1 0.00
407 92 0.23
414 6 0.01
415 1 0.00
416 3 0.01
417 1 0.00
418 12 0.03
419 40 0.10
420 3 0.01
421 96 0.24
422 17 0.04
423 27 0.07
424 15 0.04
425 30 0.07
426 6 0.01
427 11 0.03
428 17 0.04
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (403 bp):
ATTTATATAAACTATATATCATTATAACTATATATATATATATATATATATAGTTTATATAAATT
ATATATCAACTATTGTTTATAGACTATAGGTTATATATATAGTTTATATAAATTATATATAAACT
ATAAATTAAATATATATATATATATATATATATAGTTTATAATAACTATATAGTTTATACATAAA
TATAGTATATTAATATAAATTATATTTTATAAACTATATACTTTATATAGTTTATATATATAATT
TATATAAACTATAATATTATATACATACATGTACTATAACTTACATATAAAATATACATGAATAC
ATATACTATAGATTACATAAATTAACTATTGTTTATAAACATAGGTTAAAGCTACATATATAATA
TATATAAACTATT
Found at i:13371115 original size:135 final size:134
Alignment explanation
Indices: 13370746--13371134 Score: 448
Period size: 130 Copynumber: 2.9 Consensus size: 134
13370736 GACGACACTG
* * * * * *
13370746 CTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACATGGTTCC-ACTCTGC
1 CTCATACGTGATGAAGAG-TTCTTGGCCATCTTTAGG-AAGGTGATAACATGGTTCCTACGC-GA
* * * * * *
13370810 TGGGGACGGCTGGTTATCTGAGGTTGACACGGCTCATACGTGATGAAGAGTTCTGGTCAGGGGAT
63 TGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGAGGAT
**
13370875 GACATTA
128 GACACGA
* * *
13370882 CTCATACATGATGAAGAGTTCTTGGCCATC--TA--AAGGTGATAACACGGTTCCTACGTGATGA
1 CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGTGATAACATGGTTCCTACGCGATGA
* * *
13370943 GGACGGCTGGTTATCTAAGGGTGACACGGTTCCTACGTGATGAGGAAATCTGGTC-GAAGGATGA
66 GGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAG-AGGATGA
13371007 CACGA
130 CACGA
* *
13371012 CTCATGCGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTTGGTTCCTACGCGATG
1 CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAA-GGTGATAACATGGTTCCTACGCGATG
* * ***
13371077 AGGATGGCTGGTTATCTAATGTTGACGTTGCTCCTACGTGATGAGGAGATCTGGTCAG
65 AGGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAG
13371135 CTGATGTTGA
Statistics
Matches: 212, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
129 1 0.00
130 105 0.50
131 2 0.01
132 2 0.01
133 2 0.01
134 2 0.01
135 82 0.39
136 16 0.08
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (134 bp):
CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGTGATAACATGGTTCCTACGCGATGA
GGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGAGGATGAC
ACGA
Found at i:13372074 original size:16 final size:16
Alignment explanation
Indices: 13372053--13372086 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
13372043 CTTTATTTAT
13372053 TTTTTC-TTCTTTTTCA
1 TTTTTCATT-TTTTTCA
13372069 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
13372085 TT
1 TT
13372087 CCCTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCATTTTTTTCA
Found at i:13379076 original size:135 final size:134
Alignment explanation
Indices: 13378707--13379095 Score: 448
Period size: 130 Copynumber: 2.9 Consensus size: 134
13378697 GACGACACTG
* * * * * *
13378707 CTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACATGGTTCC-ACTCTGC
1 CTCATACGTGATGAAGAG-TTCTTGGCCATCTTTAGG-AAGGTGATAACATGGTTCCTACGC-GA
* * * * * *
13378771 TGGGGACGGCTGGTTATCTGAGGTTGACACGGCTCATACGTGATGAAGAGTTCTGGTCAGGGGAT
63 TGAGGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGAGGAT
**
13378836 GACATTA
128 GACACGA
* * *
13378843 CTCATACATGATGAAGAGTTCTTGGCCATC--TA--AAGGTGATAACACGGTTCCTACGTGATGA
1 CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGTGATAACATGGTTCCTACGCGATGA
* * *
13378904 GGACGGCTGGTTATCTAAGGGTGACACGGTTCCTACGTGATGAGGAAATCTGGTC-GAAGGATGA
66 GGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAG-AGGATGA
13378968 CACGA
130 CACGA
* *
13378973 CTCATGCGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTTGGTTCCTACGCGATG
1 CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAA-GGTGATAACATGGTTCCTACGCGATG
* * ***
13379038 AGGATGGCTGGTTATCTAATGTTGACGTTGCTCCTACGTGATGAGGAGATCTGGTCAG
65 AGGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAG
13379096 CTGATGTTGA
Statistics
Matches: 212, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
129 1 0.00
130 105 0.50
131 2 0.01
132 2 0.01
133 2 0.01
134 2 0.01
135 82 0.39
136 16 0.08
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (134 bp):
CTCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAAGGTGATAACATGGTTCCTACGCGATGA
GGACGGCTGGTTATCTAAGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGAGGATGAC
ACGA
Found at i:13380035 original size:16 final size:16
Alignment explanation
Indices: 13380014--13380047 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
13380004 CTTTATTTAT
13380014 TTTTTC-TTCTTTTTCA
1 TTTTTCATT-TTTTTCA
13380030 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
13380046 TT
1 TT
13380048 CCCTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCATTTTTTTCA
Found at i:13398934 original size:3 final size:3
Alignment explanation
Indices: 13398921--13398953 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
13398911 GTCGAAAAAA
13398921 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TA
13398954 ATTAAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:13399450 original size:22 final size:21
Alignment explanation
Indices: 13399410--13399463 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
13399400 AGGGGGGATT
13399410 AGGGAAAGAAAAAAACATTTCGG
1 AGGGAAA-AAAAAAACA-TTCGG
* *
13399433 AGGGAAAAAAAGAGCATTCGG
1 AGGGAAAAAAAAAACATTCGG
*
13399454 GGAGGAAAAA
1 AG-GGAAAAA
13399464 TTCGGTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.22
22 14 0.52
23 7 0.26
ACGTcount: A:0.52, C:0.07, G:0.31, T:0.09
Consensus pattern (21 bp):
AGGGAAAAAAAAAACATTCGG
Found at i:13399516 original size:12 final size:12
Alignment explanation
Indices: 13399495--13399532 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
13399485 AAAAAGAGGG
*
13399495 AAACATCGAACA
1 AAACACCGAACA
13399507 AAACACCGAACA
1 AAACACCGAACA
*
13399519 AAATACCGAA-A
1 AAACACCGAACA
13399530 AAA
1 AAA
13399533 TAAAGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.63, C:0.24, G:0.08, T:0.05
Consensus pattern (12 bp):
AAACACCGAACA
Found at i:13399534 original size:11 final size:12
Alignment explanation
Indices: 13399501--13399534 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13399491 AGGGAAACAT
*
13399501 CGAACAAAACAC
1 CGAACAAAATAC
13399513 CGAACAAAATAC
1 CGAACAAAATAC
13399525 CGAA-AAAATA
1 CGAACAAAATA
13399535 AAGAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.62, C:0.24, G:0.09, T:0.06
Consensus pattern (12 bp):
CGAACAAAATAC
Found at i:13402254 original size:63 final size:63
Alignment explanation
Indices: 13402187--13402311 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 63
13402177 CGTCCCTTTA
* * * **
13402187 CATTGCATTTTAGAGTATTATCAATTTTGCATATGCATTTGCATCTTCGTATTCTGCATGATG
1 CATTGCATTTCAGAGGATCATCAATTTTGCATATGCATTTGCATCTTCACATTCTGCATGATG
* * *
13402250 CATTGCATTTCAGAGGATCATCATTTTTGCATCTGTATTTGCATCTTCACATTCTGCATGAT
1 CATTGCATTTCAGAGGATCATCAATTTTGCATATGCATTTGCATCTTCACATTCTGCATGAT
13402312 CATCATAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.43
Consensus pattern (63 bp):
CATTGCATTTCAGAGGATCATCAATTTTGCATATGCATTTGCATCTTCACATTCTGCATGATG
Found at i:13403785 original size:20 final size:21
Alignment explanation
Indices: 13403757--13403795 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
13403747 ATTCTCTCTC
13403757 TTTCAGACCTCGAAACATTCT
1 TTTCAGACCTCGAAACATTCT
*
13403778 TTTC-GACCTTGAAACATT
1 TTTCAGACCTCGAAACATT
13403796 TATTTTATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (21 bp):
TTTCAGACCTCGAAACATTCT
Found at i:13403801 original size:21 final size:21
Alignment explanation
Indices: 13403757--13403801 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
13403747 ATTCTCTCTC
*
13403757 TTTCAGACCTCGAAACATTCT
1 TTTCAGACCTCGAAACATTAT
*
13403778 TTTC-GACCTTGAAACATTTAT
1 TTTCAGACCTCGAAACA-TTAT
13403799 TTT
1 TTT
13403802 ATCCTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (21 bp):
TTTCAGACCTCGAAACATTAT
Found at i:13404836 original size:2 final size:2
Alignment explanation
Indices: 13404829--13404886 Score: 75
Period size: 2 Copynumber: 29.5 Consensus size: 2
13404819 TCGCATAACA
*
13404829 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT A- AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
*
13404871 AT A- AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
13404887 CAATAAAGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
1 2 0.04
2 46 0.94
3 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13407714 original size:28 final size:28
Alignment explanation
Indices: 13407659--13407715 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
13407649 ACGAGATATA
*
13407659 GTGGTCCTACGGGACATATGTGTTCTAC
1 GTGGTCCTACGGGACATATGTGTCCTAC
*
13407687 GTGGTCCTATGGGACATA-GTGGTCCTAC
1 GTGGTCCTACGGGACATATGT-GTCCTAC
13407715 G
1 G
13407716 GGACAAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.30
Consensus pattern (28 bp):
GTGGTCCTACGGGACATATGTGTCCTAC
Found at i:13411100 original size:25 final size:25
Alignment explanation
Indices: 13411063--13411112 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
13411053 GATCAAGGGT
* *
13411063 ACTGAAGCGTAAACATATAGTGATA
1 ACTGAAGCATAAACATATACTGATA
*
13411088 ACTGAAGCATAAACATGTACTGATA
1 ACTGAAGCATAAACATATACTGATA
13411113 TGGTGTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.24
Consensus pattern (25 bp):
ACTGAAGCATAAACATATACTGATA
Found at i:13411520 original size:18 final size:18
Alignment explanation
Indices: 13411456--13411509 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
13411446 AGGGTTCTAC
*
13411456 GTGGTCCTACGTGACATA
1 GTGGTCCTACGGGACATA
13411474 GTGGTCCTACGGGACATA
1 GTGGTCCTACGGGACATA
13411492 GTGGTCCTACGGGACATA
1 GTGGTCCTACGGGACATA
13411510 TGTGTTCTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.24
Consensus pattern (18 bp):
GTGGTCCTACGGGACATA
Found at i:13411533 original size:28 final size:28
Alignment explanation
Indices: 13411492--13411561 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
13411482 ACGGGACATA
*
13411492 GTGGTCCTACGGGACATATGTGTTCTAC
1 GTGGTCCTATGGGACATATGTGTTCTAC
*
13411520 GTGGTCCTATGGGACATATGTGTTCTAT
1 GTGGTCCTATGGGACATATGTGTTCTAC
13411548 GTGGTCCTATGGGA
1 GTGGTCCTATGGGA
13411562 TATAGTGGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (28 bp):
GTGGTCCTATGGGACATATGTGTTCTAC
Found at i:13411570 original size:46 final size:46
Alignment explanation
Indices: 13411448--13411581 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 46
13411438 AAGAGTCGAG
* *
13411448 GGTTCTACGTGGTCCTACGTGACATAGTGGTCCTACGGGACATAGT
1 GGTTCTACGTGGTCCTATGTGATATAGTGGTCCTACGGGACATAGT
* * * * * *
13411494 GGTCCTACG-GGACATATGTGTTCTACGTGGTCCTATGGGACATA-T
1 GGTTCTACGTGGTCCTATGTGATATA-GTGGTCCTACGGGACATAGT
* *
13411539 GTGTTCTATGTGGTCCTATGGGATATAGTGGTCCTACGGGACA
1 G-GTTCTACGTGGTCCTATGTGATATAGTGGTCCTACGGGACA
13411582 AATTCTACGC
Statistics
Matches: 69, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
45 12 0.17
46 46 0.67
47 11 0.16
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (46 bp):
GGTTCTACGTGGTCCTATGTGATATAGTGGTCCTACGGGACATAGT
Found at i:13411862 original size:24 final size:24
Alignment explanation
Indices: 13411818--13411864 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
13411808 TTGTTATGGG
*
13411818 ATATACATGAATATATGTTAATGC
1 ATATACATGAATATATATTAATGC
*
13411842 ATATATATGAATGA-ATATTAATG
1 ATATACATGAAT-ATATATTAATG
13411865 ACTCATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (24 bp):
ATATACATGAATATATATTAATGC
Found at i:13413546 original size:32 final size:32
Alignment explanation
Indices: 13413499--13413582 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 32
13413489 GAACAATGGA
** *
13413499 GGCATCTTTAAAGATTTAATAGCAAATGTT-G
1 GGCATCTTTGGAGATTTAACAGCAAATGTTAG
* *
13413530 GGTCATCTTTGGAGATTTAACATCGAATGTTAG
1 GG-CATCTTTGGAGATTTAACAGCAAATGTTAG
13413563 GGCATCTTTGG-GATTTAACA
1 GGCATCTTTGGAGATTTAACA
13413583 TCCTGATGCG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 11 0.24
32 32 0.70
33 3 0.07
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.36
Consensus pattern (32 bp):
GGCATCTTTGGAGATTTAACAGCAAATGTTAG
Found at i:13413581 original size:31 final size:32
Alignment explanation
Indices: 13413523--13413584 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
13413513 TTTAATAGCA
13413523 AATGTTGGGTCATCTTTGGAGATTTAACATCG
1 AATGTTGGGTCATCTTTGGAGATTTAACATCG
13413555 AATGTTAGGG-CATCTTTGG-GATTTAACATC
1 AATGTT-GGGTCATCTTTGGAGATTTAACATC
13413585 CTGATGCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 11 0.38
32 15 0.52
33 3 0.10
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (32 bp):
AATGTTGGGTCATCTTTGGAGATTTAACATCG
Found at i:13414223 original size:123 final size:121
Alignment explanation
Indices: 13413956--13414374 Score: 651
Period size: 123 Copynumber: 3.4 Consensus size: 121
13413946 AGTATGAGCA
*
13413956 GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCCTCTGGCCAAGACT
1 GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCCCCTGGCCAAGACT
* * *
13414021 CGTC-ATATGAGTAGTGTCAACCCTTGATAACCAGCTATCCTCATCACATAGGAACC
66 CATCGATATGAGCAGTGTCAACCCTTGATAACCAGCTATCCTCATCACGTA-GAACC
* * *
13414077 ATGTTATCACCTTTATATGGTCAAGAATCATCGCATATGAGCAGTATCATCCCCTGGCCAAGACT
1 GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCCCCTGGCCAAGACT
* *
13414142 CATCGTATATGAGCAGTGTCAACCCTTGATAATCAGCCATCCTCATCACGTAGAAACC
66 CATCG-ATATGAGCAGTGTCAACCCTTGATAACCAGCTATCCTCATCACGTAG-AACC
* *
13414200 GTGTTATCACCTTTATATGGTCAAGACTCATTGCATATGAACAGTACCATCCCCTGGCCAAGACT
1 GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCCCCTGGCCAAGACT
** *
13414265 CATCGCATATGAGCAGTGTCAACCCTTGATAACCAATTGTCCTCATCACGTATGAACC
66 CATCG-ATATGAGCAGTGTCAACCCTTGATAACCAGCTATCCTCATCACGTA-GAACC
*
13414323 GTGTTATCACCTTTATATGGTCAAGACTCATCGCACATGAGCAGTACCATCC
1 GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCC
13414375 ATTGACCAGT
Statistics
Matches: 271, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
121 64 0.24
122 1 0.00
123 205 0.76
124 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (121 bp):
GTGTTATCACCTTTATATGGTCAAGACTCATCGCATATGAGCAGTACCATCCCCTGGCCAAGACT
CATCGATATGAGCAGTGTCAACCCTTGATAACCAGCTATCCTCATCACGTAGAACC
Found at i:13414458 original size:47 final size:48
Alignment explanation
Indices: 13414379--13414477 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 48
13414369 CCATCCATTG
* * ** **
13414379 ACCAGTCGTCCTCATCGTGTAGGAACTGTGTTATCA-CCCTTTAGATA
1 ACCAGTCGTCCTCATCATGTAGCAACCATGTTATCATCCCTAAAGATA
*
13414426 ACCAGTTGTCCTCATCATGTAGCAACCATGTTATCATCCCTAAAGATA
1 ACCAGTCGTCCTCATCATGTAGCAACCATGTTATCATCCCTAAAGATA
13414474 ACCA
1 ACCA
13414478 AAACTATTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 31 0.70
48 13 0.30
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (48 bp):
ACCAGTCGTCCTCATCATGTAGCAACCATGTTATCATCCCTAAAGATA
Found at i:13414681 original size:135 final size:132
Alignment explanation
Indices: 13414412--13414684 Score: 320
Period size: 135 Copynumber: 2.0 Consensus size: 132
13414402 AACTGTGTTA
* * * *
13414412 TCACCCTTTAGATAACCAGTTGTCCTCATCATGTAGCAACCATGTTATCATCCCTAAAGATAACC
1 TCACCCTTCAGATAACCAGTCGTCCTCATCACGTAGCAACCAAGTTATCATCCCTAAAGATAACC
* *
13414477 AAAACTATTCATCACGTATGAGATGTGTCATCTACCGACCAGATTTCCTCATCACGTAGGAGTCA
66 AAAACTATTCATCACGTATGAGATGTGTCATCTACCGACCAGATCTCCTCATCACGTAGAAGTCA
13414542 TG
131 TG
* * * *
13414544 TCACCC-TCAGATAATCAGTCGTCCTCATCACGTAGGAACCAAGTTATCACCCTTCCTAAATATG
1 TCACCCTTCAGATAACCAGTCGTCCTCATCACGTAGCAACCAAGTTATCA---TCCCTAAAGAT-
* * *
13414608 GA-CAAGAACTCTTCATCACGTATGAGCA-GTGTCATC-CCCTGACCAGATCTCCTCATCACGTA
62 AACCAA-AACTATTCATCACGTATGAG-ATGTGTCATCTACC-GACCAGATCTCCTCATCACGTA
**
13414670 GAAGTTGTG
124 GAAGTCATG
13414679 TCACCC
1 TCACCC
13414685 GTAGACGACC
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
131 37 0.31
132 6 0.05
134 14 0.12
135 61 0.51
136 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (132 bp):
TCACCCTTCAGATAACCAGTCGTCCTCATCACGTAGCAACCAAGTTATCATCCCTAAAGATAACC
AAAACTATTCATCACGTATGAGATGTGTCATCTACCGACCAGATCTCCTCATCACGTAGAAGTCA
TG
Found at i:13414877 original size:3 final size:3
Alignment explanation
Indices: 13414871--13414920 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
13414861 GTCAAAAAAA
*
13414871 TAT TAT TAAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13414916 TAT TA
1 TAT TA
13414921 ATTAAACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:13417076 original size:15 final size:15
Alignment explanation
Indices: 13417028--13417079 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
13417018 CAGACCAGTT
*
13417028 TTTTGTCTTAAAAATAT
1 TTTT-TCTTAAAAAT-G
*
13417045 TTTTTCTTAAAATTG
1 TTTTTCTTAAAAATG
13417060 TTTTT-TTAAAAGATG
1 TTTTTCTTAAAA-ATG
13417075 TTTTT
1 TTTTT
13417080 AGGTATTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 6 0.19
15 12 0.39
16 9 0.29
17 4 0.13
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.60
Consensus pattern (15 bp):
TTTTTCTTAAAAATG
Found at i:13417079 original size:16 final size:16
Alignment explanation
Indices: 13417027--13417079 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
13417017 GCAGACCAGT
*
13417027 TTTTTGTCTTAAAAATA
1 TTTTT-TCTTAAAAATG
*
13417044 TTTTTTCTTAAAATTG
1 TTTTTTCTTAAAAATG
13417060 -TTTTT-TTAAAAGATG
1 TTTTTTCTTAAAA-ATG
13417075 TTTTT
1 TTTTT
13417080 AGGTATTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 6 0.19
15 7 0.23
16 13 0.42
17 5 0.16
ACGTcount: A:0.28, C:0.04, G:0.08, T:0.60
Consensus pattern (16 bp):
TTTTTTCTTAAAAATG
Found at i:13421667 original size:30 final size:31
Alignment explanation
Indices: 13421633--13421697 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
13421623 AGTTACGTCA
* *
13421633 GGGACCATATTGCAAAT-GAACTAAATGTT-G
1 GGGACCAAATTGCAAATAG-ACTAAATATTAG
*
13421663 GGGACCAAATTGTAAATAGACTAAATATTAG
1 GGGACCAAATTGCAAATAGACTAAATATTAG
13421694 GGGA
1 GGGA
13421698 TTGTATTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.25
Consensus pattern (31 bp):
GGGACCAAATTGCAAATAGACTAAATATTAG
Found at i:13423260 original size:31 final size:31
Alignment explanation
Indices: 13423222--13423291 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
13423212 CTTTTAAAAA
13423222 TTGCAATACAATCCCCCAACAATTAGTCTATT
1 TTGCAATACAATCCCCCAACAATTAGTCT-TT
*** * *
13423254 TT-CAATATGGTCCCTCAACATTTAGTCTTT
1 TTGCAATACAATCCCCCAACAATTAGTCTTT
13423284 TTGCAATA
1 TTGCAATA
13423292 TGGTCCCTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 4 0.12
31 26 0.81
32 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (31 bp):
TTGCAATACAATCCCCCAACAATTAGTCTTT
Found at i:13423292 original size:31 final size:31
Alignment explanation
Indices: 13423233--13423299 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
13423223 TGCAATACAA
*
13423233 TCCCCCAACAATTAGTCTATTTTCAATATGG
1 TCCCTCAACAATTAGTCTATTTTCAATATGG
*
13423264 TCCCTCAACATTTAGTCT-TTTTGCAATATGG
1 TCCCTCAACAATTAGTCTATTTT-CAATATGG
13423295 TCCCT
1 TCCCT
13423300 GACGTAACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.24, C:0.27, G:0.10, T:0.39
Consensus pattern (31 bp):
TCCCTCAACAATTAGTCTATTTTCAATATGG
Found at i:13426777 original size:20 final size:20
Alignment explanation
Indices: 13426737--13426926 Score: 183
Period size: 20 Copynumber: 9.4 Consensus size: 20
13426727 TCCAATTTCA
13426737 CAACGCGAATATGT-AAA-TCG
1 CAACGCG-ATA-GTCAAATTCG
*
13426757 CAACACAGA-AGTCAAATTCG
1 CAACGC-GATAGTCAAATTCG
*
13426777 CAACGCGATAATCAAATTCG
1 CAACGCGATAGTCAAATTCG
*
13426797 CAACACGATAGTCAAATTCG
1 CAACGCGATAGTCAAATTCG
* *
13426817 TAACGCGGA-ATTTCAAATTCG
1 CAACGC-GATA-GTCAAATTCG
*
13426838 CAATGCGATAGTCAAATTCG
1 CAACGCGATAGTCAAATTCG
* *
13426858 CAACGTGGA-ATTTCAAATTCG
1 CAACG-CGATA-GTCAAATTCG
* *
13426879 CAATGTGATAGTCAAATTCG
1 CAACGCGATAGTCAAATTCG
*
13426899 CAACGCGAAAGTCAAATTCG
1 CAACGCGATAGTCAAATTCG
13426919 CAACGCGA
1 CAACGCGA
13426927 AACACAATAT
Statistics
Matches: 140, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
18 2 0.01
19 6 0.04
20 99 0.71
21 33 0.24
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (20 bp):
CAACGCGATAGTCAAATTCG
Found at i:13426781 original size:40 final size:40
Alignment explanation
Indices: 13426737--13426922 Score: 177
Period size: 41 Copynumber: 4.6 Consensus size: 40
13426727 TCCAATTTCA
13426737 CAACGCGAATATGTAAA-TCGCAACACAGA-AGTCAAATTCG
1 CAACGCGAATAT-TAAATTCGCAACAC-GATAGTCAAATTCG
*
13426777 CAACGCG-ATAATCAAATTCGCAACACGATAGTCAAATTCG
1 CAACGCGAAT-ATTAAATTCGCAACACGATAGTCAAATTCG
* **
13426817 TAACGCGGAAT-TTCAAATTCGCAATGCGATAGTCAAATTCG
1 CAACGC-GAATATT-AAATTCGCAACACGATAGTCAAATTCG
* ***
13426858 CAACGTGGAAT-TTCAAATTCGCAATGTGATAGTCAAATTCG
1 CAACG-CGAATATT-AAATTCGCAACACGATAGTCAAATTCG
*
13426899 CAACGCGAA-AGTCAAATTCGCAAC
1 CAACGCGAATA-TTAAATTCGCAAC
13426923 GCGAAACACA
Statistics
Matches: 126, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
39 7 0.06
40 48 0.38
41 69 0.55
42 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (40 bp):
CAACGCGAATATTAAATTCGCAACACGATAGTCAAATTCG
Found at i:13426847 original size:41 final size:40
Alignment explanation
Indices: 13426688--13426926 Score: 211
Period size: 40 Copynumber: 5.9 Consensus size: 40
13426678 AAAATGACCA
* * * * *
13426688 TCAAATTCACAACGCGAATTCCAATTTCGCAAC-CCAGT-T
1 TCAAATTCGCAACGCGAATTTCAAATTCGCAACGCGA-TAG
* * *
13426727 TCCAATTTCACAACGCGAATATGT-AAA-TCGCAACACAGA-AG
1 T-CAAATTCGCAACGCGAAT-T-TCAAATTCGCAACGC-GATAG
* *
13426768 TCAAATTCGCAACGCG-ATAATCAAATTCGCAACACGATAG
1 TCAAATTCGCAACGCGAAT-TTCAAATTCGCAACGCGATAG
* *
13426808 TCAAATTCGTAACGCGGAATTTCAAATTCGCAATGCGATAG
1 TCAAATTCGCAACGC-GAATTTCAAATTCGCAACGCGATAG
* * *
13426849 TCAAATTCGCAACGTGGAATTTCAAATTCGCAATGTGATAG
1 TCAAATTCGCAACG-CGAATTTCAAATTCGCAACGCGATAG
**
13426890 TCAAATTCGCAACGCGAAAGTCAAATTCGCAACGCGA
1 TCAAATTCGCAACGCGAATTTCAAATTCGCAACGCGA
13426927 AACACAATAT
Statistics
Matches: 168, Mismatches: 20, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
38 1 0.01
39 9 0.05
40 80 0.48
41 75 0.45
42 3 0.02
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (40 bp):
TCAAATTCGCAACGCGAATTTCAAATTCGCAACGCGATAG
Found at i:13427063 original size:22 final size:22
Alignment explanation
Indices: 13427038--13427088 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
13427028 CTATGGCGAC
13427038 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
*
13427060 ATCCGTCCCCATCTCCGGCGAA
1 ATCCGTCCCCATCTCCGACGAA
13427082 ATCCGTC
1 ATCCGTC
13427089 TATCTCCATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.20
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:13427477 original size:20 final size:20
Alignment explanation
Indices: 13427430--13427480 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
13427420 AAACTTAAAT
*
13427430 TCGCAACACGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
13427450 TCGCAACGCGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
13427470 TCGCAACGCGA
1 TCGCAACGCGA
13427481 TTTTAGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.47, C:0.24, G:0.20, T:0.10
Consensus pattern (20 bp):
TCGCAACGCGAAAATGAAAA
Found at i:13429731 original size:42 final size:42
Alignment explanation
Indices: 13429710--13429814 Score: 192
Period size: 42 Copynumber: 2.5 Consensus size: 42
13429700 GCCTCCTATT
13429710 GTTCAAGAGGCTCTTCTCATCATCGAAGAAGCCCCTCCCACC
1 GTTCAAGAGGCTCTTCTCATCATCGAAGAAGCCCCTCCCACC
13429752 GTTCAAGAGGCTCTTCTCATCATCGAAGAAGCCCCTCCCACC
1 GTTCAAGAGGCTCTTCTCATCATCGAAGAAGCCCCTCCCACC
* *
13429794 GTTCAAGAGGCCCTTATCATC
1 GTTCAAGAGGCTCTTCTCATC
13429815 GTTCAAGAGG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (42 bp):
GTTCAAGAGGCTCTTCTCATCATCGAAGAAGCCCCTCCCACC
Found at i:13429806 original size:21 final size:21
Alignment explanation
Indices: 13429685--13429844 Score: 90
Period size: 21 Copynumber: 7.6 Consensus size: 21
13429675 ATGCACCTAT
* *
13429685 CATCATTCAAGAGGCGCCTCC
1 CATCGTTCAAGAGGCCCCTCC
* * * * *
13429706 TATTGTTCAAGAGGCTCTTCT
1 CATCGTTCAAGAGGCCCCTCC
* *
13429727 CATC-ATCGAAGAAGCCCCTCC
1 CATCGTTC-AAGAGGCCCCTCC
* * * *
13429748 CACCGTTCAAGAGGCTCTTCT
1 CATCGTTCAAGAGGCCCCTCC
* *
13429769 CATC-ATCGAAGAAGCCCCTCC
1 CATCGTTC-AAGAGGCCCCTCC
* * **
13429790 CACCGTTCAAGAGGCCCTTAT
1 CATCGTTCAAGAGGCCCCTCC
* *
13429811 CATCGTTCAAGAGGTCCCGCC
1 CATCGTTCAAGAGGCCCCTCC
*
13429832 CGTCGTTCAAGAG
1 CATCGTTCAAGAG
13429845 CCCGATTCAT
Statistics
Matches: 97, Mismatches: 38, Indels: 8
0.68 0.27 0.06
Matches are distributed among these distances:
20 4 0.04
21 89 0.92
22 4 0.04
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (21 bp):
CATCGTTCAAGAGGCCCCTCC
Found at i:13431250 original size:69 final size:67
Alignment explanation
Indices: 13431168--13431343 Score: 236
Period size: 66 Copynumber: 2.6 Consensus size: 67
13431158 TGGGGTACAC
13431168 TTTTTTTGCTTGTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAA-TTGATAAGGAAATA
1 TTTTTTTGCTTGTTTAATTGAATTTGT--A---AAAGTTGATTTGTTTAATTTGATAAGGAAATA
13431231 AGAATTA
61 AGAATTA
** *
13431238 TTTTTTT-CTTGTTTAATTG-ATTTGTAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAAT
1 TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATAAGGAAATAAGAAT
13431301 TA
66 TA
*
13431303 TTTTTTTGCCTGTTTAATTG-ATTTGTAAAAGTTGATTTGTT
1 TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTT
13431344 GTTTTAAATT
Statistics
Matches: 99, Mismatches: 4, Indels: 10
0.88 0.04 0.09
Matches are distributed among these distances:
64 17 0.17
65 25 0.25
66 32 0.32
67 1 0.01
68 4 0.04
69 13 0.13
70 7 0.07
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (67 bp):
TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATAAGGAAATAAGAAT
TA
Found at i:13431416 original size:20 final size:20
Alignment explanation
Indices: 13431391--13431428 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
13431381 AGACCCGTTG
13431391 AAGGTAAATTCGCAACGCGA
1 AAGGTAAATTCGCAACGCGA
13431411 AAGGTAAATTCGCAACGC
1 AAGGTAAATTCGCAACGC
13431429 AAAATAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (20 bp):
AAGGTAAATTCGCAACGCGA
Found at i:13431484 original size:20 final size:20
Alignment explanation
Indices: 13431438--13431484 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
13431428 CAAAATAAGA
*
13431438 GTTGCGATAGTCAAATTCGC
1 GTTGCGAAAGTCAAATTCGC
***
13431458 AACGCGAAAGTCAAATTCGC
1 GTTGCGAAAGTCAAATTCGC
13431478 GTTGCGA
1 GTTGCGA
13431485 TTTTTGGTTT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (20 bp):
GTTGCGAAAGTCAAATTCGC
Found at i:13433252 original size:25 final size:25
Alignment explanation
Indices: 13433224--13433273 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
13433214 CATTATTTTC
*
13433224 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
13433249 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
13433274 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:13433382 original size:34 final size:34
Alignment explanation
Indices: 13433344--13433459 Score: 214
Period size: 34 Copynumber: 3.4 Consensus size: 34
13433334 AAGGTAAACT
*
13433344 TTCGCAACGCGAAATAAGCGTTGCGATAGTAAAA
1 TTCGCAACGCGAAATAAGCATTGCGATAGTAAAA
13433378 TTCGCAACGCGAAATAAGCATTGCGATAGTAAAA
1 TTCGCAACGCGAAATAAGCATTGCGATAGTAAAA
*
13433412 TTCGCAACGCGAAATAAGCATTGCGATAGTTAAA
1 TTCGCAACGCGAAATAAGCATTGCGATAGTAAAA
13433446 TTCGCAACGCGAAA
1 TTCGCAACGCGAAA
13433460 GTCAAATTAG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 80 1.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.21
Consensus pattern (34 bp):
TTCGCAACGCGAAATAAGCATTGCGATAGTAAAA
Found at i:13433457 original size:20 final size:20
Alignment explanation
Indices: 13433443--13433490 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
13433433 TGCGATAGTT
13433443 AAATTCGCAACGCGAAAGTC
1 AAATTCGCAACGCGAAAGTC
*
13433463 AAATTAGCAACGCGAAAGTC
1 AAATTCGCAACGCGAAAGTC
13433483 AAATTCGC
1 AAATTCGC
13433491 GTTGCGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.17
Consensus pattern (20 bp):
AAATTCGCAACGCGAAAGTC
Found at i:13433521 original size:13 final size:14
Alignment explanation
Indices: 13433486--13433524 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
13433476 GAAAGTCAAA
13433486 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
*
13433500 TTCGGGTTGCGA-T
1 TTCGCGTTGCGATT
13433513 TTCGCGTTGCGA
1 TTCGCGTTGCGA
13433525 ATTTGACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.08, C:0.21, G:0.33, T:0.38
Consensus pattern (14 bp):
TTCGCGTTGCGATT
Found at i:13433528 original size:14 final size:14
Alignment explanation
Indices: 13433486--13433528 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
13433476 GAAAGTCAAA
*
13433486 TTCGCGTTGCGATT
1 TTCGCGTTGCGAAT
*
13433500 TTCGGGTTGCG-AT
1 TTCGCGTTGCGAAT
13433513 TTCGCGTTGCGAAT
1 TTCGCGTTGCGAAT
13433527 TT
1 TT
13433529 GACTTTCGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.09, C:0.19, G:0.30, T:0.42
Consensus pattern (14 bp):
TTCGCGTTGCGAAT
Found at i:13433850 original size:18 final size:18
Alignment explanation
Indices: 13433827--13433862 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13433817 AAGCCAGTTG
*
13433827 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
13433845 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
13433863 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:13436161 original size:24 final size:24
Alignment explanation
Indices: 13436124--13436177 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
13436114 CCATCACATC
13436124 ATCAAAATCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
* *
13436148 ATCAAAGTCTGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
13436172 ATCAAA
1 ATCAAA
13436178 TTTTGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:13436191 original size:24 final size:24
Alignment explanation
Indices: 13436140--13436191 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
13436130 ATCCGGGTAT
** *
13436140 TGACCAAGATCAAAGTCTGGGTAT
1 TGACCAAGATCAAAGTCTGAATAC
* *
13436164 TGACCAAGATCAAATTTTGAATAC
1 TGACCAAGATCAAAGTCTGAATAC
13436188 TGAC
1 TGAC
13436192 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCTGAATAC
Found at i:13437132 original size:19 final size:20
Alignment explanation
Indices: 13437108--13437180 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 20
13437098 AACTAAAACC
13437108 TGTTGCGAAATT-AAATTCG
1 TGTTGCGAAATTGAAATTCG
*
13437127 TGTTGCGAATTTGAAATTC-
1 TGTTGCGAAATTGAAATTCG
* *
13437146 AGTTGCGAATTTGAAATTCCG
1 TGTTGCGAAATTGAAATT-CG
* *
13437167 CGTTGCGAATTTGA
1 TGTTGCGAAATTGA
13437181 CTATCGCGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 28 0.58
20 7 0.15
21 13 0.27
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.37
Consensus pattern (20 bp):
TGTTGCGAAATTGAAATTCG
Found at i:13437145 original size:20 final size:20
Alignment explanation
Indices: 13437109--13437340 Score: 165
Period size: 20 Copynumber: 11.6 Consensus size: 20
13437099 ACTAAAACCT
* *
13437109 GTTGCGAAATT-AAATTCGT
1 GTTGCGAATTTGAAATTCGC
*
13437128 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
13437147 GTTGCGAATTTGAAATTCCGC
1 GTTGCGAATTTGAAATT-CGC
*
13437168 GTTGCGAATTTG-ACTATCGC
1 GTTGCGAATTTGAAAT-TCGC
* *
13437188 GTTGCGAATTTG-ACTTCTGT
1 GTTGCGAATTTGAAATTC-GC
* *
13437208 ATTGCG-ATTTACAAATTCGC
1 GTTGCGAATTT-GAAATTCGC
** * *
13437228 GTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGAAATTCGC
*
13437248 GTTGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
**
13437269 AATGCG-ATTT-ACATATTCGC
1 GTTGCGAATTTGA-A-ATTCGC
*
13437289 GTTGCGAATTTAGAAATT-GG
1 GTTGCGAATTT-GAAATTCGC
* * *
13437309 GTTGCGAAATTGGAGTTCGC
1 GTTGCGAATTTGAAATTCGC
13437329 GTTGCGAATTTG
1 GTTGCGAATTTG
13437341 TTGGTAATTT
Statistics
Matches: 167, Mismatches: 31, Indels: 29
0.74 0.14 0.13
Matches are distributed among these distances:
18 1 0.01
19 38 0.23
20 90 0.54
21 36 0.22
22 1 0.01
23 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:13447684 original size:23 final size:23
Alignment explanation
Indices: 13447658--13447705 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13447648 GCATACTCCT
13447658 CCAATCAAATGCATTAAATCTCA
1 CCAATCAAATGCATTAAATCTCA
13447681 CCAATCAAATGCATTAAATCTCA
1 CCAATCAAATGCATTAAATCTCA
13447704 CC
1 CC
13447706 TTCTGCTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.29, G:0.04, T:0.25
Consensus pattern (23 bp):
CCAATCAAATGCATTAAATCTCA
Found at i:13453192 original size:27 final size:26
Alignment explanation
Indices: 13453162--13453215 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13453152 GATTTCAAGT
*
13453162 TTTTTTATAACTTTAAAAAATTAAAGA
1 TTTTTTA-AAATTTAAAAAATTAAAGA
**
13453189 TTTTTTAAAATTTTTAAAATTAAAGA
1 TTTTTTAAAATTTAAAAAATTAAAGA
13453215 T
1 T
13453216 ATAATTTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (26 bp):
TTTTTTAAAATTTAAAAAATTAAAGA
Found at i:13456306 original size:32 final size:32
Alignment explanation
Indices: 13456270--13456334 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
13456260 TAAACATATT
*
13456270 TTATGTATTAGATATTTATTTCACCTACATTA
1 TTATGTACTAGATATTTATTTCACCTACATTA
*
13456302 TTATGTACTAGATATTTATTTCACTTACATTA
1 TTATGTACTAGATATTTATTTCACCTACATTA
13456334 T
1 T
13456335 ATATATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.51
Consensus pattern (32 bp):
TTATGTACTAGATATTTATTTCACCTACATTA
Found at i:13456447 original size:2 final size:2
Alignment explanation
Indices: 13456440--13456478 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
13456430 ATATCATGTA
13456440 AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13456479 TAAGTAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13460624 original size:55 final size:55
Alignment explanation
Indices: 13460559--13460762 Score: 275
Period size: 55 Copynumber: 3.7 Consensus size: 55
13460549 GTTTTTTTTT
*
13460559 AACTACGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
* * * * * * *
13460614 AATTAAGTCTGATTTTTCATAAGTTTATTGATGATTTTTAAATGA-TCTTCAAAGA
1 AACTAAGTCTGA-TTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
* * * *
13460669 GACTAAATCTAATTTTCAGAAGTTTCTTGACGATTTTCAAATTAGTTTTTAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
*
13460724 AACTAAGTCTGATTTTCAGAAGTTTCTTAACGATTTTCA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCA
13460763 GAAGTTTCTT
Statistics
Matches: 124, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 27 0.22
55 69 0.56
56 28 0.23
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (55 bp):
AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
Found at i:13460758 original size:21 final size:21
Alignment explanation
Indices: 13460734--13460783 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
13460724 AACTAAGTCT
13460734 GATTTTCAGAAGTTTCTTAAC
1 GATTTTCAGAAGTTTCTTAAC
13460755 GATTTTCAGAAGTTTCTTAAC
1 GATTTTCAGAAGTTTCTTAAC
13460776 GATTTTCA
1 GATTTTCA
13460784 AATGAGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (21 bp):
GATTTTCAGAAGTTTCTTAAC
Found at i:13460765 original size:76 final size:74
Alignment explanation
Indices: 13460680--13460821 Score: 248
Period size: 76 Copynumber: 1.9 Consensus size: 74
13460670 ACTAAATCTA
* *
13460680 ATTTTCAGAAGTTTCTTGACGATTTTCAAATTAGTTTTTAAAGAAACTAAGTCTGATTTTCAGAA
1 ATTTTCAGAAGTTTCTTAACGATTTTCAAATGAG-TTTTAAAGAAACTAAGTCTGA-TTTCAGAA
13460745 GTTTCTTAACG
64 GTTTCTTAACG
13460756 ATTTTCAGAAGTTTCTTAACGATTTTCAAATGAGTTTTAAAGAAACTAAGTCTGATTTCAGAAGT
1 ATTTTCAGAAGTTTCTTAACGATTTTCAAATGAGTTTTAAAGAAACTAAGTCTGATTTCAGAAGT
13460821 T
66 T
13460822 CTTGATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
74 11 0.17
75 21 0.33
76 32 0.50
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (74 bp):
ATTTTCAGAAGTTTCTTAACGATTTTCAAATGAGTTTTAAAGAAACTAAGTCTGATTTCAGAAGT
TTCTTAACG
Found at i:13460851 original size:53 final size:53
Alignment explanation
Indices: 13460758--13460858 Score: 123
Period size: 53 Copynumber: 1.9 Consensus size: 53
13460748 TCTTAACGAT
* * *
13460758 TTTCAGAAGTTTCTTAACGATTTTCAAATGAGTTTTAAAGAAACTAAGTCTGA
1 TTTCAGAAGTTTCTTAACGATTTTCAAAAGACTTTCAAAGAAACTAAGTCTGA
* * * *
13460811 TTTCAGAAG-TTCTTGATGATTTTTAAAAGAACTTTCAAAGAAATTAAG
1 TTTCAGAAGTTTCTTAACGATTTTCAAAAG-ACTTTCAAAGAAACTAAG
13460859 CCTAATTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 16 0.40
53 24 0.60
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (53 bp):
TTTCAGAAGTTTCTTAACGATTTTCAAAAGACTTTCAAAGAAACTAAGTCTGA
Found at i:13460979 original size:53 final size:53
Alignment explanation
Indices: 13460855--13461037 Score: 231
Period size: 53 Copynumber: 3.4 Consensus size: 53
13460845 TCAAAGAAAT
* * * * * *
13460855 TAAGCCTAATTTTTTGGGGTTTTCTTGATATTTTAAAATGAATTTGAAAAAGAAAC
1 TAAGCCTAATTTTTAGGGG-TTTCTAGATGTTTTCAAATGAATTT--AAAAGGAGC
* ** *
13460911 AAAGCCTGGTTTTTAGGGGTTTCTCGATGTTTTCAAATGAATTTAAAAGGAGC
1 TAAGCCTAATTTTTAGGGGTTTCTAGATGTTTTCAAATGAATTTAAAAGGAGC
* *
13460964 TAAGCCTGATTTTTAGGGGTTTCTAGATGTTTTCAAATGAATTTGAAAGGAGC
1 TAAGCCTAATTTTTAGGGGTTTCTAGATGTTTTCAAATGAATTTAAAAGGAGC
13461017 TAAGCCTAATTTTTAGGGGTT
1 TAAGCCTAATTTTTAGGGGTT
13461038 CCTTGACAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
53 76 0.67
55 22 0.19
56 15 0.13
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
TAAGCCTAATTTTTAGGGGTTTCTAGATGTTTTCAAATGAATTTAAAAGGAGC
Found at i:13465701 original size:24 final size:24
Alignment explanation
Indices: 13465674--13465748 Score: 98
Period size: 24 Copynumber: 3.1 Consensus size: 24
13465664 GTTCGTGAAA
* *
13465674 GTTCGGTTATGTTCGTAT-GGTTAT
1 GTTCGTTTATGTTCAT-TCGGTTAT
13465698 GTTCGTTTATGTTCATTCGGTTAT
1 GTTCGTTTATGTTCATTCGGTTAT
**
13465722 GTTCGTTTATGTTCATTCATTTAT
1 GTTCGTTTATGTTCATTCGGTTAT
13465746 GTT
1 GTT
13465749 TAACTCAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.02
24 45 0.98
ACGTcount: A:0.13, C:0.11, G:0.21, T:0.55
Consensus pattern (24 bp):
GTTCGTTTATGTTCATTCGGTTAT
Found at i:13465716 original size:14 final size:14
Alignment explanation
Indices: 13465699--13465748 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
13465689 TATGGTTATG
13465699 TTCGTTTATGTTCA
1 TTCGTTTATGTTCA
*
13465713 TTCGGTTATG----
1 TTCGTTTATGTTCA
13465723 TTCGTTTATGTTCA
1 TTCGTTTATGTTCA
*
13465737 TTCATTTATGTT
1 TTCGTTTATGTT
13465749 TAACTCAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
10 9 0.31
14 20 0.69
ACGTcount: A:0.14, C:0.12, G:0.16, T:0.58
Consensus pattern (14 bp):
TTCGTTTATGTTCA
Found at i:13466846 original size:16 final size:15
Alignment explanation
Indices: 13466825--13466875 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
13466815 GTCTCTAATG
13466825 TTTATGTTCGTGTTCA
1 TTTATGTTCGT-TTCA
*
13466841 TTTATGTTCGTATTCG
1 TTTATGTTCGT-TTCA
13466857 TTTATGTTCGTTT-A
1 TTTATGTTCGTTTCA
13466871 TTTAT
1 TTTAT
13466876 TAAATGAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 2 0.06
16 25 0.78
ACGTcount: A:0.14, C:0.10, G:0.16, T:0.61
Consensus pattern (15 bp):
TTTATGTTCGTTTCA
Found at i:13469775 original size:18 final size:18
Alignment explanation
Indices: 13469748--13469791 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
13469738 AAATAATGGT
*
13469748 GAGTTATCTTTAAGCATG
1 GAGTTTTCTTTAAGCATG
13469766 GAGTTTTCTTTAAGCATG
1 GAGTTTTCTTTAAGCATG
13469784 GAGTTTTC
1 GAGTTTTC
13469792 AAGCAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (18 bp):
GAGTTTTCTTTAAGCATG
Found at i:13474121 original size:19 final size:19
Alignment explanation
Indices: 13474097--13474133 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
13474087 AACTGTAAAA
13474097 AAATAATTAAATAAAATAT
1 AAATAATTAAATAAAATAT
13474116 AAATAATTAAATAAAATA
1 AAATAATTAAATAAAATA
13474134 CTAACAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATAATTAAATAAAATAT
Found at i:13474159 original size:28 final size:28
Alignment explanation
Indices: 13474125--13474189 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
13474115 TAAATAATTA
13474125 AATAAAATACTAACAAAATATTAAATAT
1 AATAAAATACTAACAAAATATTAAATAT
13474153 AATAAAATACTAACAAAATATTAAATAT
1 AATAAAATACTAACAAAATATTAAATAT
13474181 AATAAAATA
1 AATAAAATA
13474190 TACCTTGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (28 bp):
AATAAAATACTAACAAAATATTAAATAT
Found at i:13474161 original size:33 final size:30
Alignment explanation
Indices: 13474109--13474189 Score: 118
Period size: 28 Copynumber: 2.8 Consensus size: 30
13474099 ATAATTAAAT
13474109 AAAATA-TAAATAATTAAATAAAATACTAAC
1 AAAATATTAAATAA-TAAATAAAATACTAAC
13474139 AAAATATTAAAT-AT-AATAAAATACTAAC
1 AAAATATTAAATAATAAATAAAATACTAAC
13474167 AAAATATTAAAT-AT-AATAAAATA
1 AAAATATTAAATAATAAATAAAATA
13474190 TACCTTGAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
28 37 0.74
29 1 0.02
30 7 0.14
31 5 0.10
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (30 bp):
AAAATATTAAATAATAAATAAAATACTAAC
Found at i:13474189 original size:17 final size:18
Alignment explanation
Indices: 13474157--13474190 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13474147 AAATATAATA
13474157 AAATACTAACAAAATATT
1 AAATACTAACAAAATATT
*
13474175 AAATA-TAATAAAATAT
1 AAATACTAACAAAATAT
13474191 ACCTTGAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATACTAACAAAATATT
Found at i:13474415 original size:40 final size:40
Alignment explanation
Indices: 13474359--13474456 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
13474349 AGACTGTTAG
* * ** * *
13474359 GAAGACGTGACTCATGCACCGTGCCATACCCTACGTGGCA
1 GAAGACGCGACCCATGCACCACGCCATACCATACGTGACA
13474399 GAAGACGCGACCCATGCACCACGCCATACCATACGTGACA
1 GAAGACGCGACCCATGCACCACGCCATACCATACGTGACA
* *
13474439 GAAGGCGCGGCCCATGCA
1 GAAGACGCGACCCATGCA
13474457 GCATGCCTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.28, C:0.35, G:0.26, T:0.12
Consensus pattern (40 bp):
GAAGACGCGACCCATGCACCACGCCATACCATACGTGACA
Found at i:13474932 original size:17 final size:17
Alignment explanation
Indices: 13474899--13474949 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
13474889 TCCTCTATAT
13474899 ATTATTATTTTTAATTAA
1 ATTATTATTTTT-ATTAA
*
13474917 ATTACTATTTTTATTAA
1 ATTATTATTTTTATTAA
* *
13474934 ATAATTTTTTTTATTA
1 ATTATTATTTTTATTA
13474950 TTATTTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTATTATTTTTATTAA
Found at i:13480444 original size:10 final size:9
Alignment explanation
Indices: 13480419--13480444 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13480409 TCTAAAATTT
13480419 CCATTTTTA
1 CCATTTTTA
13480428 CCATTTTTA
1 CCATTTTTA
13480437 CCATTTTT
1 CCATTTTT
13480445 GTGATGTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (9 bp):
CCATTTTTA
Found at i:13484521 original size:2 final size:2
Alignment explanation
Indices: 13484514--13484560 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
13484504 TCAATCTACA
13484514 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13484556 AT AT A
1 AT AT A
13484561 ATTTACGACA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13485955 original size:2 final size:2
Alignment explanation
Indices: 13485948--13486000 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
13485938 TGTCGTAAAT
13485948 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13485990 TA TA TA TA TA T
1 TA TA TA TA TA T
13486001 TGTAGATTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13492231 original size:2 final size:2
Alignment explanation
Indices: 13492224--13492274 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
13492214 GTATTCCTTG
13492224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13492266 TA TA TA TA T
1 TA TA TA TA T
13492275 TTGATTGTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13492294 original size:13 final size:13
Alignment explanation
Indices: 13492276--13492305 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13492266 TATATATATT
13492276 TGATTGTTTTATC
1 TGATTGTTTTATC
13492289 TGATTGTTTTATC
1 TGATTGTTTTATC
13492302 TGAT
1 TGAT
13492306 CTGAAATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.60
Consensus pattern (13 bp):
TGATTGTTTTATC
Found at i:13492683 original size:30 final size:31
Alignment explanation
Indices: 13492607--13492691 Score: 84
Period size: 31 Copynumber: 2.7 Consensus size: 31
13492597 AGATGCTCAT
* *
13492607 TTGGGTAAGCTCTCAAGCCCCAAGGTACTCTC
1 TTGGGTAAGCTCT-AAGGCCCAAAGTACTCTC
* * *
13492639 TT-GGTTAGAATCTAAGGCCCAAAGTATTC-C
1 TTGGGTAAG-CTCTAAGGCCCAAAGTACTCTC
13492669 TTGGGTAAGCTCTAAGGCTCCAA
1 TTGGGTAAGCTCTAAGGC-CCAA
13492692 GGTGTTCTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
30 11 0.26
31 27 0.63
32 5 0.12
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (31 bp):
TTGGGTAAGCTCTAAGGCCCAAAGTACTCTC
Found at i:13495417 original size:3 final size:3
Alignment explanation
Indices: 13495411--13495438 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
13495401 AAAAATATAT
13495411 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13495439 CTACATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13497013 original size:9 final size:9
Alignment explanation
Indices: 13497001--13497031 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
13496991 TTCTTTTTTA
13497001 TTTTTTATT
1 TTTTTTATT
13497010 TTTTTTATT
1 TTTTTTATT
13497019 TTTTTTATT
1 TTTTTTATT
13497028 TTTT
1 TTTT
13497032 CTGTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTATT
Found at i:13497038 original size:18 final size:18
Alignment explanation
Indices: 13497001--13497039 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
13496991 TTCTTTTTTA
*
13497001 TTTTTTATTTTTTTTATT
1 TTTTTTATTTTTTCTATT
*
13497019 TTTTTTATTTTTTCTGTT
1 TTTTTTATTTTTTCTATT
13497037 TTT
1 TTT
13497040 ATTTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.03, T:0.87
Consensus pattern (18 bp):
TTTTTTATTTTTTCTATT
Found at i:13497049 original size:18 final size:16
Alignment explanation
Indices: 13496994--13497049 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
13496984 TTTGACTTTC
13496994 TTTTTTATTTTTTATT
1 TTTTTTATTTTTTATT
13497010 TTTTTTATTTTTT-TT
1 TTTTTTATTTTTTATT
*
13497025 ATTTTTTCTGTTTTTATT
1 -TTTTTTAT-TTTTTATT
13497043 TTGTTTT
1 TT-TTTT
13497050 TACTAACTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
15 2 0.06
16 20 0.57
17 7 0.20
18 6 0.17
ACGTcount: A:0.09, C:0.02, G:0.04, T:0.86
Consensus pattern (16 bp):
TTTTTTATTTTTTATT
Found at i:13502955 original size:2 final size:2
Alignment explanation
Indices: 13502948--13503008 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
13502938 CGTTCTCCAA
13502948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13502990 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
13503009 CCCAGCACCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13503258 original size:3 final size:3
Alignment explanation
Indices: 13503252--13503291 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
13503242 AAAAATATAT
13503252 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13503292 CTATATGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13504825 original size:20 final size:20
Alignment explanation
Indices: 13504785--13504845 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
13504775 TGACTTTCCT
13504785 TTTTA-TTTTT-TATTTTT-
1 TTTTATTTTTTCTATTTTTA
13504802 TTTTATTTTTTCTATTTTTA
1 TTTTATTTTTTCTATTTTTA
* *
13504822 TTTTATTTTTACTAACTTTTA
1 TTTTATTTTTTCT-ATTTTTA
13504843 TTT
1 TTT
13504846 GTTTTGTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.13
18 5 0.13
19 7 0.18
20 12 0.32
21 9 0.24
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATTTTTTCTATTTTTA
Found at i:13514160 original size:3 final size:3
Alignment explanation
Indices: 13514154--13514194 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
13514144 AAAAGTATAT
*
13514154 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13514195 TACATGTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:13515725 original size:18 final size:18
Alignment explanation
Indices: 13515702--13515739 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
13515692 ATTATTTTAG
*
13515702 TCTCTAATTTGTTTTCAT
1 TCTCTAATATGTTTTCAT
13515720 TCTCTAATATGTTTTCAT
1 TCTCTAATATGTTTTCAT
13515738 TC
1 TC
13515740 ATTACTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.58
Consensus pattern (18 bp):
TCTCTAATATGTTTTCAT
Found at i:13515899 original size:12 final size:12
Alignment explanation
Indices: 13515894--13515936 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
13515884 TTTTTTTATT
13515894 TTTTTTATTTTG
1 TTTTTTATTTTG
13515906 TTTTTTATTTTG
1 TTTTTTATTTTG
* *
13515918 TTTATTATTTTC
1 TTTTTTATTTTG
13515930 TTTTTTA
1 TTTTTTA
13515937 ACTCTAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (12 bp):
TTTTTTATTTTG
Found at i:13515936 original size:24 final size:21
Alignment explanation
Indices: 13515885--13515936 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 21
13515875 TTTTGTATAT
*
13515885 TTTTTTATTTTTTTTATTTTG
1 TTTTTTATTTTTTTTATTTTC
13515906 TTTTTTATTTTGTTTATTATTTTC
1 TTTTTTA-TTT-TTT-TTATTTTC
13515930 TTTTTTA
1 TTTTTTA
13515937 ACTCTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 7 0.26
22 3 0.11
23 3 0.11
24 14 0.52
ACGTcount: A:0.12, C:0.02, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTTTTATTTTTTTTATTTTC
Found at i:13517885 original size:3 final size:3
Alignment explanation
Indices: 13517877--13517920 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
13517867 AATGAATATT
13517877 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
13517921 TTCGGGAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:13529031 original size:18 final size:18
Alignment explanation
Indices: 13529008--13529043 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13528998 TAGGATATCC
13529008 TTATCTTTAGTAGTAATG
1 TTATCTTTAGTAGTAATG
13529026 TTATCTTTAGTAGTAATG
1 TTATCTTTAGTAGTAATG
13529044 AGCTCTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
TTATCTTTAGTAGTAATG
Found at i:13529050 original size:18 final size:18
Alignment explanation
Indices: 13529010--13529053 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
13529000 GGATATCCTT
**
13529010 ATCTTTAGTAGTAATGTT
1 ATCTTTAGTAGTAATGAG
13529028 ATCTTTAGTAGTAATGAG
1 ATCTTTAGTAGTAATGAG
*
13529046 CTCTTTAG
1 ATCTTTAG
13529054 GAACCCATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (18 bp):
ATCTTTAGTAGTAATGAG
Found at i:13529559 original size:66 final size:65
Alignment explanation
Indices: 13529406--13529567 Score: 220
Period size: 66 Copynumber: 2.5 Consensus size: 65
13529396 GTTCACTAAG
* * *
13529406 AGTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAAGCCACAGTGCATCGATGCATGGCT
* * *
13529470 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAAATCCTCAGTGCATCGGTGCATGG-
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAAAAGCCACAGTGCATCGATGCATGGC
13529534 T
65 T
* *
13529535 ATGTGCATCGATGCATGAATTGCATTCGATGTT
1 A-GTGCATCGATGCATCAAATGCATTCGATGTT
13529568 CAATTTAATT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
64 29 0.33
65 7 0.08
66 51 0.59
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAAGCCACAGTGCATCGATGCATGGCT
Found at i:13532677 original size:95 final size:94
Alignment explanation
Indices: 13532505--13532700 Score: 252
Period size: 95 Copynumber: 2.1 Consensus size: 94
13532495 TATAATATTA
* *
13532505 TATATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCTGGCTTTATGGA
1 TATATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAATGCCCTGGCTTTACGGA
* **
13532570 TAATATTAAGCTAGTCTGATAAAGGTAAT
66 TAAGATTAAGCTAACCTGATAAAGGTAAT
**
13532599 TATACTATACAATAAAGCTTGAGCTGTCCCTCTA-AGGCAATTGGTTAAAT-TTCTCGGCTTTAC
1 TATA-TATACAATAAAGCTTGAGCTGTCCCTCTAGA-GCAATTGGTTAAATGCCCT-GGCTTTAC
* * **
13532662 GTATAAGATTCAGCTAACCTGATAAAGGTGTT
63 GGATAAGATTAAGCTAACCTGATAAAGGTAAT
13532694 TATATAT
1 TATATAT
13532701 TAAGTAGTCC
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
94 10 0.11
95 78 0.89
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (94 bp):
TATATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAATGCCCTGGCTTTACGGA
TAAGATTAAGCTAACCTGATAAAGGTAAT
Found at i:13534163 original size:84 final size:83
Alignment explanation
Indices: 13533912--13534666 Score: 823
Period size: 84 Copynumber: 9.2 Consensus size: 83
13533902 GCACAATGCC
* *
13533912 AGAAGGGTTATCTGCCACC-AATACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
*
13533976 GCAGCATAGCTTAAGTCG
66 GCAGCATAACTTAAGTCG
* * * ** * * * *
13533994 AGAAGGGCTATCTG---CCAAAGACCCTCGAGTTCGATTATACCCAGCTTCGAGGGCACATCATT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATT
* * *
13534056 TGCAGAATAACTTAAGGCT
65 TGCAGCATAACTTAAGTCG
* * *
13534075 AGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* *
13534140 TGCATCATATCTTAAGTCG
65 TGCAGCATAACTTAAGTCG
* * ** * * * *
13534159 AGAAGGTTTATCTG---CCAAAGACCCTAAAGTTTGACTACGCTCAGCTTCGAGTGCACATCATT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAG-GCATATCATT
* * * *
13534221 TACAGCATAACTCAAGGCT
65 TGCAGCATAACTTAAGTCG
* * * *
13534240 AGAAGGGTTATCTGTCACTAAAAGACCTTTGAGTTCGACTACGCTCAGCTCTAAGGCATATCATT
1 AGAAGGGTTATCTGCCAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
*
13534305 TGCATCATAACTTAAGTCG
65 TGCAGCATAACTTAAGTCG
* *
13534324 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-G-ACATCATT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
13534387 TACTGCATAGCTTAAGTCG
65 TGCAGCATAACTTAAGTCG
* * * * * *
13534406 AGAAGGGCTATCTG---CCAAAGACCCTCGAGCTCGACTATGCTCAGCTTCGAGGGCATATCATT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATT
* * * * *
13534468 TACAGTATAACTCAAGGCT
65 TGCAGCATAACTTAAGTCG
* *
13534487 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTTAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
*
13534552 GCAGCATAACTTAAATCG
66 GCAGCATAACTTAAGTCG
13534570 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
13534635 TACAACATAGCTTAAGTCG
65 TGCAGCATAACTTAAGTCG
*
13534654 AGAAGGGCTATCT
1 AGAAGGGTTATCT
13534667 TCCAAAGACC
Statistics
Matches: 552, Mismatches: 102, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
78 27 0.05
79 5 0.01
80 52 0.09
81 109 0.20
82 48 0.09
83 43 0.08
84 211 0.38
85 57 0.10
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (83 bp):
AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
GCAGCATAACTTAAGTCG
Found at i:13534206 original size:165 final size:164
Alignment explanation
Indices: 13533912--13535049 Score: 1228
Period size: 165 Copynumber: 7.0 Consensus size: 164
13533902 GCACAATGCC
* *
13533912 AGAAGGGTTATCTGCCACC-AATACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * * ** *
13533976 GCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTATACCCAGCTT
66 GCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCTT
* * * *
13534041 CGAGGGCACATCATTTGCAGAATAACTTAAGGCT
131 CCAGGGCACATCATTTACAGCATAACTCAAGGCT
* * *
13534075 AGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * * ** *
13534140 TGCATCATATCTTAAGTCGAGAAGGTTTATCTGCCAAAGACCCTAAAGTTTGACTACGCTCAGCT
65 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCT
* *
13534205 TCGAGTGCACATCATTTACAGCATAACTCAAGGCT
130 TCCAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
13534240 AGAAGGGTTATCTGTCACTAAAAGACCTTTGAGTTCGACTACGCTCAGCTCTAAGGCATATCATT
1 AGAAGGGTTATCTGCCAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
13534305 TGCATCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTC
65 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCCTCGAGTTCGACTACGCTC
* * * * * *
13534370 AGC-TCCA-AG-ACATCATTTACTGCATAGCTTAAGTCG
126 AGCTTCCAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * * * *
13534406 AGAAGGGCTATCTG---CCAAAGACCCTCGAGCTCGACTATGCTCAGCTTCGAGGGCATATCATT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATT
* * * * * * *
13534468 TACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTTA
65 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTG---CCAAAGACCCTCGAGTTCGACTACGCTCA
* * * * ** *
13534533 GC-TCCAAGGCATATCATTTGCAGCATAACTTAAATCG
127 GCTTCCAGGGCACATCATTTACAGCATAACTCAAGGCT
13534570 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * * * *
13534635 TACAACATAGCTTAAGTCGAGAAGGGCTATCTTCCAAAGACCCTCGA----G--T----TCA---
65 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCT
*
13534687 ---AGGGTACATCATTTACAGCATAACTCAAGGCT
130 TCCAGGGCACATCATTTACAGCATAACTCAAGGCT
* * *
13534719 AGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGTATATCATTT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * * * *
13534784 GCAGCATAACTTAAATTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGACTATGCTCA
66 GCAGCATAACTTAAGTCGAGAAGGGTTATC--T--GCCAAAGACCCTCGAGTTCGACTACGCTCA
* * * *
13534849 GC-TCCAAGGCATATCATTTGCAGAATAACTCAAGGCT
127 GCTTCCAGGGCACATCATTTACAGCATAACTCAAGGCT
* *
13534886 AGAAGGGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGC-CACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
13534951 TGCAGCATAACTTAAGTCGATAAGGGCTATCTGCCAAAGACCCTCGAGTTTGACTACGCTCAGCT
65 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCT
* *
13535016 TCGAGGGCACATCATTTACAGCATAGCTCAAGGC
130 TCCAGGGCACATCATTTACAGCATAACTCAAGGC
13535050 AATAAGGGCT
Statistics
Matches: 816, Mismatches: 124, Indels: 68
0.81 0.12 0.07
Matches are distributed among these distances:
148 71 0.09
149 39 0.05
150 1 0.00
152 13 0.02
154 2 0.00
156 1 0.00
158 2 0.00
160 1 0.00
162 62 0.08
163 58 0.07
164 81 0.10
165 239 0.29
166 36 0.04
167 81 0.10
168 103 0.13
169 26 0.03
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (164 bp):
AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
GCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGACTACGCTCAGCTT
CCAGGGCACATCATTTACAGCATAACTCAAGGCT
Found at i:13534848 original size:84 final size:84
Alignment explanation
Indices: 13534694--13535040 Score: 395
Period size: 84 Copynumber: 4.2 Consensus size: 84
13534684 TCAAGGGTAC
* * * * *
13534694 ATCATTTACAGCATAACTCAAGGCT-AGAAGGGTTATCTGTC-ACCAAAGACCTTTGAGTTCGAC
1 ATCATTTGCAGCATAACTTAA-GTTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGAC
*
13534757 TACGCTCAGCTCCAAGGTAT
65 TACGCTCAGCTCCAAGGCAT
*
13534777 ATCATTTGCAGCATAACTTAAATTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTTAAGTTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGACT
*
13534842 ATGCTCAGCTCCAAGGCAT
66 ACGCTCAGCTCCAAGGCAT
* * * *
13534861 ATCATTTGCAGAATAACTCAAGGCT-AGAAGGGTTATCT-GCTAACCAAAGACCTTCGAGTTCGA
1 ATCATTTGCAGCATAACTTAA-GTTGAGAAGGGTTATCTATC-AACCAAAGACCTTCGAGTTCGA
*
13534924 CTACGCTCAGCTCCAAGGCAC
64 CTACGCTCAGCTCCAAGGCAT
* * ** * *
13534945 ATCATTTGCAGCATAACTTAAGTCGATAAGGG----CTATCTGCCAAAGACCCTCGAGTTTGACT
1 ATCATTTGCAGCATAACTTAAGTTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGACT
* * *
13535006 ACGCTCAGCTTCGAGGGCAC
66 ACGCTCAGC-TCCAAGGCAT
*
13535026 ATCATTTACAGCATA
1 ATCATTTGCAGCATA
13535041 GCTCAAGGCA
Statistics
Matches: 229, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
80 31 0.14
81 23 0.10
82 1 0.00
83 36 0.16
84 137 0.60
85 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (84 bp):
ATCATTTGCAGCATAACTTAAGTTGAGAAGGGTTATCTATCAACCAAAGACCTTCGAGTTCGACT
ACGCTCAGCTCCAAGGCAT
Found at i:13534892 original size:232 final size:233
Alignment explanation
Indices: 13534211--13534921 Score: 971
Period size: 232 Copynumber: 3.0 Consensus size: 233
13534201 AGCTTCGAGT
*
13534211 GCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACTAAAAGACCTTTGAGTTC
1 GCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC-CAAAGACCTTTGAGTTC
* * *
13534276 GACTACGCTCAGCTCTAAGGCATATCATTTGCATCATAACTTAAGTCGAGAAGGGTTATCTGCCA
65 GACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCA
* * * *
13534341 ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-G-ACATCATTTACTGCATAGCTTAAGT
130 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACAGAATAGCTTAAGT
*
13534404 CGAGAAGGGCTATCTGCCAAAGACCCTCGAGCTCGACTATGCTCAGCTTCGAGG
195 CGAGAAGGGCTATCTTCCAAAGACCCTCGA----G----T--TCA----C-AGG
* * *
13534458 GCATATCATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCG
1 GCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCG
*
13534523 ACTACGCTTAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAA
13534588 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACA-ACATAGCTTAAGT
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACAGA-ATAGCTTAAGT
13534652 CGAGAAGGGCTATCTTCCAAAGACCCTCGAGTTCA-AGG
195 CGAGAAGGGCTATCTTCCAAAGACCCTCGAGTTCACAGG
*
13534690 GTACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCG
1 GCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCG
* * **
13534755 ACTACGCTCAGCTCCAAGGTATATCATTTGCAGCATAACTTAAATTGAGAAGGGTTATCTATCAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAA
* * * * *
13534820 CCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCATATCATTTGCAGAATAACTCAAGGC
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACAGAATAGCTTAAGTC
* * *
13534885 TAGAAGGGTTATCTGCTAACCAAAGACCTTCGAGTTC
196 GAGAAGGGCTATCT--T--CCAAAGACCCTCGAGTTC
13534922 GACTACGCTC
Statistics
Matches: 426, Mismatches: 30, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
232 194 0.46
233 1 0.00
234 1 0.00
236 17 0.04
238 3 0.01
240 1 0.00
244 1 0.00
246 112 0.26
247 46 0.11
248 50 0.12
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (233 bp):
GCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCG
ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAA
CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACAGAATAGCTTAAGTC
GAGAAGGGCTATCTTCCAAAGACCCTCGAGTTCACAGG
Found at i:13534993 original size:316 final size:313
Alignment explanation
Indices: 13534379--13535000 Score: 888
Period size: 316 Copynumber: 2.0 Consensus size: 313
13534369 CAGCTCCAAG
* * * * *
13534379 ACATCATTTACTGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGCTCGACTAT
1 ACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAAAGACCCTCGAGCTCGACTAC
* * * * *
13534444 GCTCAGCTTCGAGGGCATATCATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAA
66 GCTCAGCTTCCAAGGCATATCATTTACAGCATAACTCAAGACTAGAAGGGTTATCTATCACCAAA
* * * *
13534509 GACCTTCGAGTTCGACTACGCTTAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAA
131 GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGAATAACTCAAAGCGAGAA
*
13534574 GGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACA
196 GGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACA
* *
13534639 ACATAGCTTAAGTCGAGAAGGGCTATCTTCCAAAGACCCTCGAGTTCAAGGGT
261 ACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCAAGGGT
* * * * *
13534692 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGAC
1 ACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTATCTG---CCAAAGACCCTCGAGCTCGAC
* * * *
13534757 TACGCTCAGC-TCCAAGGTATATCATTTGCAGCATAACTTAA-ATTGAGAAGGGTTATCTATCAA
63 TACGCTCAGCTTCCAAGGCATATCATTTACAGCATAACTCAAGACT-AGAAGGGTTATCTATC-A
* *
13534820 CCAAAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCATATCATTTGCAGAATAACTCAAGGC
126 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGAATAACTCAAAGC
* *
13534885 TAGAAGGGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
191 GAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
* * *
13534950 TTGCAGCATAACTTAAGTCGATAAGGGCTATCTGCCAAAGACCCTCGAGTT
256 TTACAACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTT
13535001 TGACTACGCT
Statistics
Matches: 271, Mismatches: 33, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
313 35 0.13
314 1 0.00
315 40 0.15
316 195 0.72
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (313 bp):
ACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAAAGACCCTCGAGCTCGACTAC
GCTCAGCTTCCAAGGCATATCATTTACAGCATAACTCAAGACTAGAAGGGTTATCTATCACCAAA
GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGAATAACTCAAAGCGAGAA
GGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACA
ACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCAAGGGT
Done.