Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 60 of 73
Found at i:13827056 original size:21 final size:20
Alignment explanation
Indices: 13827027--13827096 Score: 51
Period size: 21 Copynumber: 3.6 Consensus size: 20
13827017 TCAAGGGAAG
13827027 TTGTCTCAAGAGAGACGAAAT
1 TTGTCTCAAGAGAGA-GAAAT
*
13827048 TTGTTTC-A-AG-G-GAAA-
1 TTGTCTCAAGAGAGAGAAAT
* *
13827063 CTGTCTCAAGAGAGAAAAAAT
1 TTGTCTCAAGAGAG-AGAAAT
*
13827084 TTGTTTCAAGAGA
1 TTGTCTCAAGAGA
13827097 AACTTTCTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
15 5 0.14
16 5 0.14
17 2 0.05
18 2 0.05
19 2 0.05
20 4 0.11
21 17 0.46
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (20 bp):
TTGTCTCAAGAGAGAGAAAT
Found at i:13827088 original size:172 final size:175
Alignment explanation
Indices: 13826782--13827121 Score: 535
Period size: 172 Copynumber: 2.0 Consensus size: 175
13826772 GTGTTTCAAG
* * *
13826782 AGAAACTGTCTCTAGGGAGGCAAAATTTTCTTTCAAGAGAAACATATTCAAAGGTTGGTGTTTCA
1 AGAAACTGTCTCAAGGGAGACAAAATTTTCTTTCAAGAGAAACATATTCAAAGATTGGTGTTTCA
* *
13826847 AGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAATTGTCTCAAGAGAGATAAAAT
66 AGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAT
13826912 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
131 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
* * *
13826957 AGAAACTGTCTCAAGGGAGACGAAA-TTTGTTTCAAG-GAAAACATATTCAAAGATT-TTGTTTC
1 AGAAACTGTCTCAAGGGAGACAAAATTTTCTTTCAAGAG-AAACATATTCAAAGATTGGTGTTTC
* * *
13827019 AAGGGAAGTTGTCTCAAGAGAGACGAAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAA
65 AAGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAA
*
13827083 TTTGTTTCAAGAGAAACTTTCTCAAGAGAGACAAAACTT
130 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
13827122 TGTTTTGAGT
Statistics
Matches: 152, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
172 72 0.47
173 32 0.21
174 26 0.17
175 22 0.14
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (175 bp):
AGAAACTGTCTCAAGGGAGACAAAATTTTCTTTCAAGAGAAACATATTCAAAGATTGGTGTTTCA
AGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAT
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
Found at i:13827143 original size:37 final size:34
Alignment explanation
Indices: 13827027--13827151 Score: 117
Period size: 36 Copynumber: 3.5 Consensus size: 34
13827017 TCAAGGGAAG
* *
13827027 TTGTCTCAAGAGAGACGAAATTTGTTTCAAGGGAAA
1 TTGTCTCAAGAGAGACAAAATTTGTTT--AGAGAAA
* *
13827063 CTGTCTCAAGAGAGAAAAAATTTGTTTCAAGAGAAA
1 TTGTCTCAAGAGAGACAAAATTTGTTT--AGAGAAA
*
13827099 CTT-TCTCAAGAGAGACAAAACTTTGTTTTGAGTAAA
1 -TTGTCTCAAGAGAGACAAAA-TTTGTTTAGAG-AAA
*
13827135 TTAGTCTCAAGCGAGAC
1 TT-GTCTCAAGAGAGAC
13827152 GACCCCTTGT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
35 5 0.07
36 51 0.67
37 20 0.26
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (34 bp):
TTGTCTCAAGAGAGACAAAATTTGTTTAGAGAAA
Found at i:13828857 original size:11 final size:11
Alignment explanation
Indices: 13828841--13828935 Score: 65
Period size: 11 Copynumber: 8.8 Consensus size: 11
13828831 TGCGTCTTGT
13828841 TTTCTTTTTTC
1 TTTCTTTTTTC
*
13828852 TTTCTTTTTCC
1 TTTCTTTTTTC
*
13828863 TTTGTTTTTTC
1 TTTCTTTTTTC
13828874 TTT-TTTTTT-
1 TTTCTTTTTTC
*
13828883 TATT-TTCTTT-
1 T-TTCTTTTTTC
* *
13828893 TTGCTTTTTGC
1 TTTCTTTTTTC
*
13828904 TTT-GTTTTTC
1 TTTCTTTTTTC
*
13828914 TCTCTTTTCTTC
1 TTTCTTTT-TTC
13828926 TTCTCTTTTT
1 TT-TCTTTTT
13828936 GTTCTTGATT
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
9 2 0.03
10 25 0.38
11 27 0.42
12 5 0.08
13 6 0.09
ACGTcount: A:0.01, C:0.17, G:0.04, T:0.78
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:13828870 original size:22 final size:21
Alignment explanation
Indices: 13828845--13828921 Score: 65
Period size: 21 Copynumber: 3.7 Consensus size: 21
13828835 TCTTGTTTTC
13828845 TTTTTTCTTTCTTTTTCCTTTG
1 TTTTTTCTTTCTTTTT-CTTTG
13828867 TTTTTTCTTT-TTTTT-TTAT-
1 TTTTTTCTTTCTTTTTCTT-TG
*
13828886 TTTCTTT-TTGCTTTTTGCTTTG
1 TTT-TTTCTTTCTTTTT-CTTTG
*
13828908 -TTTTTCTCTCTTTT
1 TTTTTTCTTTCTTTT
13828922 CTTCTTCTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
19 7 0.16
20 12 0.27
21 14 0.31
22 12 0.27
ACGTcount: A:0.01, C:0.14, G:0.05, T:0.79
Consensus pattern (21 bp):
TTTTTTCTTTCTTTTTCTTTG
Found at i:13828882 original size:23 final size:23
Alignment explanation
Indices: 13828841--13828901 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
13828831 TGCGTCTTGT
* *
13828841 TTTCTTTTTTC-TTTCTTTTTCC
1 TTTCTTTTTTCTTTTTTTTTTAC
* *
13828863 TTTGTTTTTTCTTTTTTTTTTAT
1 TTTCTTTTTTCTTTTTTTTTTAC
*
13828886 TTTCTTTTTGCTTTTT
1 TTTCTTTTTTCTTTTT
13828902 GCTTTGTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.31
23 22 0.69
ACGTcount: A:0.02, C:0.13, G:0.03, T:0.82
Consensus pattern (23 bp):
TTTCTTTTTTCTTTTTTTTTTAC
Found at i:13828895 original size:29 final size:29
Alignment explanation
Indices: 13828840--13828914 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
13828830 ATGCGTCTTG
13828840 TTTTCTTTTTTCTTTCTTTTTCCTTTG-TT
1 TTTTCTTTTTT-TTTCTTTTTCCTTTGCTT
*
13828869 TTTTCTTTTTTTTT-TATTTTCTTTTTGCTT
1 TTTTCTTTTTTTTTCT-TTTTC-CTTTGCTT
* *
13828899 TTTGCTTTGTTTTTCT
1 TTTTCTTTTTTTTTCT
13828915 CTCTTTTCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
27 1 0.03
28 8 0.21
29 15 0.38
30 14 0.36
31 1 0.03
ACGTcount: A:0.01, C:0.13, G:0.05, T:0.80
Consensus pattern (29 bp):
TTTTCTTTTTTTTTCTTTTTCCTTTGCTT
Found at i:13828933 original size:41 final size:41
Alignment explanation
Indices: 13828855--13828936 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
13828845 TTTTTTCTTT
* * *
13828855 CTTTTTCCTTTGTTTTTTCTTTTTTTTTTATTTTCTTTTTG
1 CTTTTTCCTTTGTTTTTTCTTCTTTTCTTATTCTCTTTTTG
* *
13828896 CTTTTTGCTTTG-TTTTTCTCTCTTTTCTTCTTCTCTTTTTG
1 CTTTTTCCTTTGTTTTTTCT-TCTTTTCTTATTCTCTTTTTG
13828937 TTCTTGATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 7 0.20
41 28 0.80
ACGTcount: A:0.01, C:0.17, G:0.06, T:0.76
Consensus pattern (41 bp):
CTTTTTCCTTTGTTTTTTCTTCTTTTCTTATTCTCTTTTTG
Found at i:13828940 original size:14 final size:15
Alignment explanation
Indices: 13828904--13828941 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
13828894 TGCTTTTTGC
*
13828904 TTTGTTTTTCTCTCT
1 TTTGTTCTTCTCTCT
*
13828919 TTTCTTCTTCTCT-T
1 TTTGTTCTTCTCTCT
13828933 TTTGTTCTT
1 TTTGTTCTT
13828942 GATTGGATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTGTTCTTCTCTCT
Found at i:13830708 original size:16 final size:17
Alignment explanation
Indices: 13830687--13830722 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
13830677 TTTAAATGAT
13830687 GAGAACAAAAA-AAAAA
1 GAGAACAAAAATAAAAA
13830703 GAGAACAAAAATAAAAA
1 GAGAACAAAAATAAAAA
13830720 GAG
1 GAG
13830723 TTAGTGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.75, C:0.06, G:0.17, T:0.03
Consensus pattern (17 bp):
GAGAACAAAAATAAAAA
Found at i:13831817 original size:3 final size:3
Alignment explanation
Indices: 13831797--13831854 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
13831787 TCAACGAAAA
*
13831797 AAT AA- AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13831844 AAT AAT AAT AA
1 AAT AAT AAT AA
13831855 ATTTAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:13832570 original size:3 final size:3
Alignment explanation
Indices: 13832556--13832596 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
13832546 GGTCTACAAA
13832556 AAT AAT AA- AAT AAT AAT AAT AAT AAT AA- ATAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A
13832597 TTTTTATAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 5 0.15
3 28 0.82
4 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:13835444 original size:30 final size:30
Alignment explanation
Indices: 13835410--13835471 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
13835400 TTATCGGAAC
*
13835410 CGTCTTTCGGGTGGGCCCGGAATTGGGTTT
1 CGTCTTTCAGGTGGGCCCGGAATTGGGTTT
*
13835440 CGTCTTTTAGGTGGGCCCGGAATTGGGTTT
1 CGTCTTTCAGGTGGGCCCGGAATTGGGTTT
13835470 CG
1 CG
13835472 ACTTGAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.08, C:0.19, G:0.39, T:0.34
Consensus pattern (30 bp):
CGTCTTTCAGGTGGGCCCGGAATTGGGTTT
Found at i:13836024 original size:16 final size:17
Alignment explanation
Indices: 13836005--13836036 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13835995 AATAACTAAA
13836005 ATAAA-TAAATAAAAAC
1 ATAAATTAAATAAAAAC
13836021 ATAAATTAAATAAAAA
1 ATAAATTAAATAAAAA
13836037 TTAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (17 bp):
ATAAATTAAATAAAAAC
Found at i:13836024 original size:25 final size:24
Alignment explanation
Indices: 13835996--13836042 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
13835986 AATAATAATA
*
13835996 ATAACTAAAATAAATAAATAAAAAC
1 ATAAATAAAATAAA-AAATAAAAAC
* *
13836021 ATAAATTAAATAAAAATTAAAA
1 ATAAATAAAATAAAAAATAAAA
13836043 GAAAATAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (24 bp):
ATAAATAAAATAAAAAATAAAAAC
Found at i:13836120 original size:48 final size:50
Alignment explanation
Indices: 13836060--13836156 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
13836050 AACGAAATAA
* *
13836060 AAACAGAAAC-AAAAG-AAG-TAAAATAAAATGTAAAAAAAGATATATATG
1 AAACAGAAACAAAAAGAAAGAAAAAATAAAAAG-AAAAAAAGATATATATG
* *
13836108 AAACAGAAACAAAAAGAAAGAAAAAATAAAAAGAAAACAATATATATAT
1 AAACAGAAACAAAAAGAAAGAAAAAATAAAAAGAAAAAAAGATATATAT
13836157 ATATATATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 10 0.24
49 5 0.12
50 17 0.40
51 10 0.24
ACGTcount: A:0.70, C:0.05, G:0.10, T:0.14
Consensus pattern (50 bp):
AAACAGAAACAAAAAGAAAGAAAAAATAAAAAGAAAAAAAGATATATATG
Found at i:13836190 original size:2 final size:2
Alignment explanation
Indices: 13836147--13836171 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13836137 AAAGAAAACA
13836147 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
13836172 ATTTTAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13839183 original size:12 final size:13
Alignment explanation
Indices: 13839165--13839195 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
13839155 CTCCTTACTT
13839165 TCTTTTCTTTTTC
1 TCTTTTCTTTTTC
13839178 -CTTTTCTTTTTC
1 TCTTTTCTTTTTC
13839190 TCTTTT
1 TCTTTT
13839196 TTCAATTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TCTTTTCTTTTTC
Found at i:13839269 original size:6 final size:7
Alignment explanation
Indices: 13839235--13839266 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
13839225 ACCCTAAACA
13839235 TTTTTCT
1 TTTTTCT
13839242 TTTTTCT
1 TTTTTCT
13839249 TTTTTCT
1 TTTTTCT
13839256 TTTTTCT
1 TTTTTCT
13839263 TTTT
1 TTTT
13839267 CTTCTTCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:13849831 original size:17 final size:16
Alignment explanation
Indices: 13849805--13849843 Score: 69
Period size: 17 Copynumber: 2.4 Consensus size: 16
13849795 TAATAATAAC
13849805 TAAAAAACAAATTAAA
1 TAAAAAACAAATTAAA
13849821 TAAAAACACAAATTAAA
1 TAAAAA-ACAAATTAAA
13849838 TAAAAA
1 TAAAAA
13849844 TTAAAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAAAAACAAATTAAA
Found at i:13849950 original size:2 final size:2
Alignment explanation
Indices: 13849945--13849970 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13849935 AAAGAAAAGA
13849945 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13849971 GTAAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13850063 original size:2 final size:2
Alignment explanation
Indices: 13850056--13850101 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
13850046 GAATAATAGA
13850056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13850098 AT AT
1 AT AT
13850102 TGTTAGATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13858010 original size:19 final size:18
Alignment explanation
Indices: 13857983--13858018 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
13857973 TTTATAAAAA
*
13857983 TCATGATAATCAATTTCAG
1 TCATAATAATC-ATTTCAG
13858002 TCATAATAATCATTTCA
1 TCATAATAATCATTTCA
13858019 TATTATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
TCATAATAATCATTTCAG
Found at i:13858332 original size:2 final size:2
Alignment explanation
Indices: 13858325--13858357 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13858315 TTATCCAATG
13858325 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13858358 CAACATGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13860736 original size:37 final size:37
Alignment explanation
Indices: 13860686--13860756 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
13860676 GAGAAGAAAT
13860686 TAAAGATTAACAATTATAGTAGAATCAACTCCAATGA
1 TAAAGATTAACAATTATAGTAGAATCAACTCCAATGA
13860723 TAAAGATTAACAATTATAGTAGAATCAACTCCAA
1 TAAAGATTAACAATTATAGTAGAATCAACTCCAA
13860757 GGTTGTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.27
Consensus pattern (37 bp):
TAAAGATTAACAATTATAGTAGAATCAACTCCAATGA
Found at i:13861696 original size:3 final size:3
Alignment explanation
Indices: 13861680--13861726 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
13861670 TCTACAAAAA
*
13861680 TAT TAT TAA T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13861727 ATTTATTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 1 0.02
3 40 0.98
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:13861732 original size:9 final size:10
Alignment explanation
Indices: 13861679--13861733 Score: 64
Period size: 9 Copynumber: 5.8 Consensus size: 10
13861669 GTCTACAAAA
13861679 ATATTATTAAT
1 ATATTATT-AT
*
13861690 TTATTATTAT
1 ATATTATTAT
13861700 -TATTATTAT
1 ATATTATTAT
13861709 -TATTATTAT
1 ATATTATTAT
13861718 -TATTATTAT
1 ATATTATTAT
13861727 AT-TTATT
1 ATATTATT
13861734 TTGTTTACAT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
9 32 0.76
10 3 0.07
11 7 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATATTATTAT
Found at i:13862590 original size:22 final size:23
Alignment explanation
Indices: 13862545--13862591 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
13862535 AGGGAACCTT
*
13862545 GTTTCTTTTTTAGGGGTTATAGG
1 GTTTCTTTTTTAGGGGTTAAAGG
13862568 GTTT-TTTTTTA-GGGTTAGAAGG
1 GTTTCTTTTTTAGGGGTTA-AAGG
13862590 GT
1 GT
13862592 GGCATGTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 12 0.55
23 4 0.18
ACGTcount: A:0.15, C:0.02, G:0.32, T:0.51
Consensus pattern (23 bp):
GTTTCTTTTTTAGGGGTTAAAGG
Found at i:13862727 original size:2 final size:2
Alignment explanation
Indices: 13862722--13862748 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13862712 CTAAGAAAAA
13862722 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
13862749 CAAAGTGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13870761 original size:23 final size:23
Alignment explanation
Indices: 13870743--13870803 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
13870733 CTCGTATAAA
13870743 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
13870766 TGCACCGAAGTGCCATGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
13870789 TACACCGTAGTGCCA
1 TGCACCGAAGTGCCA
13870804 TATAAGATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:13871069 original size:31 final size:30
Alignment explanation
Indices: 13871025--13871084 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
13871015 TATTGTATAG
*
13871025 ACATATAATTTCCAT-ATCTTTATCACATAA
1 ACATATAATTTCCATCA-CCTTATCACATAA
*
13871055 ACATATCATGTTCCATCACCTTATCACATA
1 ACATATAAT-TTCCATCACCTTATCACATA
13871085 GCTTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 8 0.31
31 17 0.65
32 1 0.04
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.37
Consensus pattern (30 bp):
ACATATAATTTCCATCACCTTATCACATAA
Found at i:13871155 original size:25 final size:24
Alignment explanation
Indices: 13871127--13871188 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
13871117 CTTAATGCAT
* *
13871127 ATAATATGAATTCATATCATGTATC
1 ATAATATGAATGC-GATCATGTATC
13871152 ATAATATGAAATGCGATCATGTATC
1 ATAATATG-AATGCGATCATGTATC
*
13871177 AAAATATTGAAT
1 ATAATA-TGAAT
13871189 CTAGACTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 26 0.81
26 6 0.19
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (24 bp):
ATAATATGAATGCGATCATGTATC
Found at i:13871448 original size:20 final size:20
Alignment explanation
Indices: 13871425--13871477 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
13871415 TAATGAAGGT
13871425 ATGCATCGATGCACCACACC
1 ATGCATCGATGCACCACACC
13871445 ATGCATCGATGCACCACACC
1 ATGCATCGATGCACCACACC
13871465 ATGCATCGATGCA
1 ATGCATCGATGCA
13871478 TAAATCCTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (20 bp):
ATGCATCGATGCACCACACC
Found at i:13873377 original size:23 final size:23
Alignment explanation
Indices: 13873351--13873408 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
13873341 TTTTCTGAAT
*
13873351 GACCGCGTAGAATTATCTC-GAAG
1 GACCACGTAGAATTATC-CAGAAG
* *
13873374 GACCACATAGAATTGTCCAGAAG
1 GACCACGTAGAATTATCCAGAAG
13873397 GACCACGTAGAA
1 GACCACGTAGAA
13873409 CCATCGACTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.03
23 29 0.97
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (23 bp):
GACCACGTAGAATTATCCAGAAG
Found at i:13873636 original size:24 final size:24
Alignment explanation
Indices: 13873608--13873662 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
13873598 TCATAAAATA
13873608 AATAAAATAATTCAAATTGTTTTC
1 AATAAAATAATTCAAATTGTTTTC
13873632 AATAAAATAATTCAAATTGTTTTC
1 AATAAAATAATTCAAATTGTTTTC
13873656 AATAAAA
1 AATAAAA
13873663 AACCTTCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (24 bp):
AATAAAATAATTCAAATTGTTTTC
Found at i:13881392 original size:20 final size:20
Alignment explanation
Indices: 13881324--13881437 Score: 95
Period size: 20 Copynumber: 5.6 Consensus size: 20
13881314 ATTTCTTTCG
*
13881324 AGGGATCGATCCATTTGAAA
1 AGGGATCGATCCTTTTGAAA
* * ***
13881344 ATGGATCGATCTTTTCTCCCGA
1 AGGGATCGATCCTTT-T-GAAA
13881366 A-GGATCGATCCTTTTGAAA
1 AGGGATCGATCCTTTTGAAA
****
13881385 AGGGATCGATCCTTTCTCTCG
1 AGGGATCGATCCTTT-TGAAA
*
13881406 AGGGATCAATCCTTTTGAAA
1 AGGGATCGATCCTTTTGAAA
13881426 AGGGATCGATCC
1 AGGGATCGATCC
13881438 ATTGTACAAC
Statistics
Matches: 70, Mismatches: 20, Indels: 8
0.71 0.20 0.08
Matches are distributed among these distances:
19 2 0.03
20 38 0.54
21 28 0.40
22 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (20 bp):
AGGGATCGATCCTTTTGAAA
Found at i:13881411 original size:21 final size:21
Alignment explanation
Indices: 13881303--13881437 Score: 78
Period size: 21 Copynumber: 6.6 Consensus size: 21
13881293 AAAACAACGA
* **
13881303 AGGGATCGATCATTTCTTTCG
1 AGGGATCGATCCTTTCTCACG
* * **
13881324 AGGGATCGATCCATT-TGAAA
1 AGGGATCGATCCTTTCTCACG
* * *
13881344 ATGGATCGATCTTTTCTCCCG
1 AGGGATCGATCCTTTCTCACG
* * **
13881365 AAGGATCGATCCTTT-TGAAA
1 AGGGATCGATCCTTTCTCACG
*
13881385 AGGGATCGATCCTTTCTCTCG
1 AGGGATCGATCCTTTCTCACG
* * **
13881406 AGGGATCAATCCTTT-TGAAA
1 AGGGATCGATCCTTTCTCACG
13881426 AGGGATCGATCC
1 AGGGATCGATCC
13881438 ATTGTACAAC
Statistics
Matches: 82, Mismatches: 30, Indels: 5
0.70 0.26 0.04
Matches are distributed among these distances:
20 40 0.49
21 42 0.51
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (21 bp):
AGGGATCGATCCTTTCTCACG
Found at i:13881437 original size:41 final size:41
Alignment explanation
Indices: 13881302--13881437 Score: 200
Period size: 41 Copynumber: 3.3 Consensus size: 41
13881292 CAAAACAACG
* * *
13881302 AAGGGATCGATCATTTCTTTCGAGGGATCGATCCATTTGAA
1 AAGGGATCGATCCTTTCTCTCGAGGGATCGATCCTTTTGAA
* * * *
13881343 AATGGATCGATCTTTTCTCCCGAAGGATCGATCCTTTTGAA
1 AAGGGATCGATCCTTTCTCTCGAGGGATCGATCCTTTTGAA
*
13881384 AAGGGATCGATCCTTTCTCTCGAGGGATCAATCCTTTTGAA
1 AAGGGATCGATCCTTTCTCTCGAGGGATCGATCCTTTTGAA
13881425 AAGGGATCGATCC
1 AAGGGATCGATCC
13881438 ATTGTACAAC
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 84 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (41 bp):
AAGGGATCGATCCTTTCTCTCGAGGGATCGATCCTTTTGAA
Found at i:13888224 original size:21 final size:20
Alignment explanation
Indices: 13888176--13888247 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
13888166 GTTTCTTTTG
*
13888176 AGGGATCGATCTTTTTTCAA
1 AGGGATCGATCTTTTTCCAA
* *
13888196 AAGGATCGATCTTTTCTCCCA
1 AGGGATCGATCTTTT-TCCAA
* **
13888217 AGGGATCGATCCTTTTGAAA
1 AGGGATCGATCTTTTTCCAA
*
13888237 AGTGATCGATC
1 AGGGATCGATC
13888248 CATTACACAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 26 0.62
21 16 0.38
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (20 bp):
AGGGATCGATCTTTTTCCAA
Found at i:13888295 original size:21 final size:21
Alignment explanation
Indices: 13888269--13888324 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
13888259 AGATAGTTTA
**
13888269 GGATCGATCATTTCGGTCAAG
1 GGATCGATCATTTCCCTCAAG
* *
13888290 GGATCGATCCTTTCCCTTAAG
1 GGATCGATCATTTCCCTCAAG
*
13888311 GGATCAATCATTTC
1 GGATCGATCATTTC
13888325 TAAAAAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (21 bp):
GGATCGATCATTTCCCTCAAG
Found at i:13893324 original size:18 final size:18
Alignment explanation
Indices: 13893295--13893330 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
13893285 TAATTTAAAA
13893295 TTAATAAAATTATAAATTT
1 TTAATAAAATTA-AAATTT
13893314 TTAAT-AAATTAAAATTT
1 TTAATAAAATTAAAATTT
13893331 ACAATGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATAAAATTAAAATTT
Found at i:13893628 original size:24 final size:23
Alignment explanation
Indices: 13893601--13893646 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13893591 TTTTATTAAA
13893601 AATTTCATATCTTTAAAATTTTAT
1 AATTTCATATC-TTAAAATTTTAT
* *
13893625 AATTTTATATCTTAAATTTTTA
1 AATTTCATATCTTAAAATTTTA
13893647 ATAAAGTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
AATTTCATATCTTAAAATTTTAT
Found at i:13893650 original size:24 final size:25
Alignment explanation
Indices: 13893596--13893650 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
13893586 TTATATTTTA
*
13893596 TTAAAAATTTCATATCTTTAAAATT
1 TTAATAATTTCATATCTTTAAAATT
* *
13893621 TT-ATAATTTTATATC-TTAAATTT
1 TTAATAATTTCATATCTTTAAAATT
13893644 TTAATAA
1 TTAATAA
13893651 AGTTGGCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 9 0.35
24 15 0.58
25 2 0.08
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (25 bp):
TTAATAATTTCATATCTTTAAAATT
Found at i:13900831 original size:21 final size:22
Alignment explanation
Indices: 13900779--13900876 Score: 87
Period size: 23 Copynumber: 4.5 Consensus size: 22
13900769 GTGCATTGAC
*
13900779 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTCAAGG-GTGT
* * *
13900802 ATCGGTGCACCTTC-ATGGTGT
1 ATCGATGCACATTCAAGGGTGT
13900823 ATCGATGCACATTCAAAGGGATGT
1 ATCGATGCACATTC-AAGGG-TGT
*
13900847 ATCGATGCAC-TGTTAA--GTGT
1 ATCGATGCACAT-TCAAGGGTGT
13900867 ATCGATGCAC
1 ATCGATGCAC
13900877 TAAGCACAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
20 13 0.21
21 16 0.25
22 2 0.03
23 18 0.29
24 14 0.22
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (22 bp):
ATCGATGCACATTCAAGGGTGT
Found at i:13903667 original size:28 final size:30
Alignment explanation
Indices: 13903636--13903691 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
13903626 CAAAAATAAC
*
13903636 ATACAGAAGA-AA-ACACACTCCTACAAAA
1 ATACAGAAGACAAGAAACACTCCTACAAAA
**
13903664 ATACTTAAGACAAGAAACACTCCTACAA
1 ATACAGAAGACAAGAAACACTCCTACAA
13903692 TACCTCACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
29 2 0.09
30 13 0.57
ACGTcount: A:0.54, C:0.25, G:0.07, T:0.14
Consensus pattern (30 bp):
ATACAGAAGACAAGAAACACTCCTACAAAA
Found at i:13920529 original size:16 final size:16
Alignment explanation
Indices: 13920510--13920552 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
13920500 GGTAATTTTG
13920510 TTATAA-TATTTGTTTA
1 TTATAATTA-TTGTTTA
*
13920526 TTATACTTATTGTTTA
1 TTATAATTATTGTTTA
*
13920542 TTATGATTATT
1 TTATAATTATT
13920553 TGAAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 21 0.91
17 2 0.09
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (16 bp):
TTATAATTATTGTTTA
Found at i:13924244 original size:34 final size:34
Alignment explanation
Indices: 13924201--13924265 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
13924191 CCTCCAGGAT
*
13924201 GGGTCATAAAAATC-TGTGACGGTGGCGGCGGCGG
1 GGGTCAT-AAAATCAGGTGACGGTGGCGGCGGCGG
*
13924235 GGGTCATAAAATCAGGTGATGGTGGCGGCGG
1 GGGTCATAAAATCAGGTGACGGTGGCGGCGG
13924266 TGGCATCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 6 0.21
34 22 0.79
ACGTcount: A:0.22, C:0.15, G:0.45, T:0.18
Consensus pattern (34 bp):
GGGTCATAAAATCAGGTGACGGTGGCGGCGGCGG
Found at i:13926019 original size:17 final size:17
Alignment explanation
Indices: 13925994--13926026 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
13925984 AAATTAAATA
13925994 AAATATTAAA-AAATTT
1 AAATATTAAATAAATTT
13926010 AAATACTTAAATAAATT
1 AAATA-TTAAATAAATT
13926027 AAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATTAAATAAATTT
Found at i:13926021 original size:24 final size:23
Alignment explanation
Indices: 13925981--13926054 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 23
13925971 ATATATGCAA
13925981 AAAAAATT-AAATA--AAATATT
1 AAAAAATTAAAATATTAAATATT
*
13926001 AAAAAATTTAAATACTTAAATAAATT
1 AAAAAATTAAAATA-TTAAAT--ATT
13926027 -AAAAA-TAAAATATTAAATA-T
1 AAAAAATTAAAATATTAAATATT
13926047 AATAAAAT
1 AA-AAAAT
13926055 ATACCTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
20 9 0.20
21 7 0.16
22 4 0.09
23 6 0.14
24 10 0.23
25 5 0.11
26 3 0.07
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAAAATTAAAATATTAAATATT
Found at i:13926028 original size:17 final size:16
Alignment explanation
Indices: 13925988--13926046 Score: 52
Period size: 17 Copynumber: 3.8 Consensus size: 16
13925978 CAAAAAAAAT
*
13925988 TAAATAAAATATTAAA
1 TAAATTAAATATTAAA
13926004 -AAATTTAAATACTTAAA
1 TAAA-TTAAATA-TTAAA
*
13926021 TAAATTAAA-AATAAA
1 TAAATTAAATATTAAA
*
13926036 -ATATTAAATAT
1 TAAATTAAATAT
13926047 AATAAAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
14 7 0.20
15 8 0.23
16 7 0.20
17 10 0.29
18 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAATTAAATATTAAA
Found at i:13927036 original size:25 final size:25
Alignment explanation
Indices: 13927008--13927058 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
13926998 GAATTAGGCT
*
13927008 TTCGTCTTTTCTGAGTATTATCAGC
1 TTCGTCTTTTCTGAGTATCATCAGC
13927033 TTCGTCTTTTCTGAGTATCATCAGC
1 TTCGTCTTTTCTGAGTATCATCAGC
13927058 T
1 T
13927059 GAAATTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.47
Consensus pattern (25 bp):
TTCGTCTTTTCTGAGTATCATCAGC
Found at i:13933780 original size:19 final size:18
Alignment explanation
Indices: 13933756--13933791 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
13933746 AATTTTTAAT
13933756 CAAAAAATTATATCAAAAA
1 CAAAAAATTA-ATCAAAAA
*
13933775 CAAAAATTTAATCAAAA
1 CAAAAAATTAATCAAAA
13933792 GTGTTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (18 bp):
CAAAAAATTAATCAAAAA
Found at i:13935567 original size:3 final size:3
Alignment explanation
Indices: 13935555--13935592 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
13935545 AGAAGACGAT
* *
13935555 GAG GAA GAG GAG GAA GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
13935593 AGAAGAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:13935569 original size:9 final size:9
Alignment explanation
Indices: 13935555--13935598 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
13935545 AGAAGACGAT
13935555 GAGGAAGAG
1 GAGGAAGAG
13935564 GAGGAAGAG
1 GAGGAAGAG
*
13935573 GAGGAGGAG
1 GAGGAAGAG
*
13935582 GAGGAGGAG
1 GAGGAAGAG
*
13935591 GAAGAAGA
1 GAGGAAGA
13935599 AGAAGGGCGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (9 bp):
GAGGAAGAG
Found at i:13938657 original size:14 final size:14
Alignment explanation
Indices: 13938640--13938666 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13938630 TAATATGTTA
13938640 TTTTCTTCATGTCC
1 TTTTCTTCATGTCC
13938654 TTTTCTTCATGTC
1 TTTTCTTCATGTC
13938667 ATTGTAGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.26, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTCTTCATGTCC
Found at i:13953941 original size:2 final size:2
Alignment explanation
Indices: 13953934--13953986 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
13953924 TTTTGTTTAT
13953934 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13953976 TA TA TA TA TA T
1 TA TA TA TA TA T
13953987 GAGTTATAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13973476 original size:30 final size:27
Alignment explanation
Indices: 13973419--13973476 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 27
13973409 CTCAAAACAT
**
13973419 TATTATTTTATATATTTAATATTAATA
1 TATTATTTTATATATTTAATAAAAATA
13973446 TATTATTTTATTATCATTTTAATAAAAATA
1 TATTATTTTA-TAT-A-TTTAATAAAAATA
13973476 T
1 T
13973477 TAATTAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 10 0.38
28 3 0.12
29 1 0.04
30 12 0.46
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTATTTTATATATTTAATAAAAATA
Found at i:13973533 original size:22 final size:22
Alignment explanation
Indices: 13973507--13973551 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
13973497 TATTAAATTA
*
13973507 TTAAATATTTAAAAT-ATATTCT
1 TTAAA-ATATAAAATAATATTCT
*
13973529 TTAAAATATAATATAATATTCT
1 TTAAAATATAAAATAATATTCT
13973551 T
1 T
13973552 ATTTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (22 bp):
TTAAAATATAAAATAATATTCT
Found at i:13973609 original size:25 final size:25
Alignment explanation
Indices: 13973555--13973611 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
13973545 TATTCTTATT
13973555 TTAATATTATAATTTTAATAGTTTAA
1 TTAATATTATAATTTTAATAG-TTAA
13973581 -TAATATTATTAATTTT-ATAAG-TAA
1 TTAATATTA-TAATTTTAAT-AGTTAA
13973605 TTAATAT
1 TTAATAT
13973612 ACTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
24 3 0.11
25 16 0.57
26 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTAATATTATAATTTTAATAGTTAA
Found at i:13973649 original size:18 final size:18
Alignment explanation
Indices: 13973626--13973679 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
13973616 AATAATATAT
13973626 TATTTCTATTTTAATAAA
1 TATTTCTATTTTAATAAA
*
13973644 TATTTC-A-TATAATTATAA
1 TATTTCTATTTTAA-TA-AA
*
13973662 TATTTTTATTTTAATAAA
1 TATTTCTATTTTAATAAA
13973680 ATATAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
16 4 0.14
17 3 0.10
18 15 0.52
19 3 0.10
20 4 0.14
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTCTATTTTAATAAA
Found at i:13975688 original size:13 final size:13
Alignment explanation
Indices: 13975670--13975704 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
13975660 TTCACATTGT
*
13975670 TGTGTATAGTTGA
1 TGTGTATAGATGA
*
13975683 TGTGTAAAGATGA
1 TGTGTATAGATGA
13975696 TGTGTATAG
1 TGTGTATAG
13975705 GTAATTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (13 bp):
TGTGTATAGATGA
Found at i:13979238 original size:324 final size:322
Alignment explanation
Indices: 13978646--13979301 Score: 1132
Period size: 324 Copynumber: 2.0 Consensus size: 322
13978636 GGAACCTGTC
*
13978646 AACATGCATGAAGCTCTTCAGTCACCTCATTGGAGAAATGCACTTTATGCTGAACTTGAACCTTA
1 AACAAGCATGAAGCTCTTCAGTCACCTCATTGGAGAAATGCACTTTATGCTGAACTTGAACCTTA
13978711 CAAAAGAATGATACATGGTCTCTAGTGCCTTTGCCTGAAGACGGTCAGTGGTAGGGTGTAAGTGG
66 CAAAAGAATGATACATGGTCTCTAGTGCCTTTGCCTGAAGACGGTCAGTGGTAGGGTGTAAGTGG
* * *
13978776 CTGTCTAAGTTAAAAAAGAATCCTGATGGGTCTATTAGTCGATACAAGGCTCGCCTTGTAGCCAA
131 CTGTCTAAGTTAAAAAAGAATCCTGACGAGTCTATCAGTCGATACAAGGCTCGCCTTGTAGCCAA
* *
13978841 AGGGTACTTATAAGTTCCAGGTCACGATTTTAATGAGACATTCATTCCAGTAGTTAAGTTTACCA
196 AGGGTACTCACAAGTTCCAGGTCACGATTTTAATGAGACATTCATTCCAGTAGTTAAGTTTACCA
* * *
13978906 TATTGAATGTGGTTTTGACTTTAGCTGTGACAAAGGGCTGGAAGCTGTGGCAGATTGATGTA
261 CATTGAATGTGGTTTTGACTTTAGCTGTGACAAAGGGCTGGAAGCTGCGACAGATTGATGTA
*
13978968 AACAAGCATGAAGCTCTTCAGTCACCTCATTGGAGAAATGCAGTTTATGCTGAACTTGAAGCCTT
1 AACAAGCATGAAGCTCTTCAGTCACCTCATTGGAGAAATGCACTTTATGCTGAACTTGAA-CCTT
* *
13979033 GCAAAAGAATGATACATGGTCTCTAGTGCCTTTGCCTGAAGGATGGTCAGTGGTAGGGTGTAAGT
65 ACAAAAGAATGATACATGGTCTCTAGTGCCTTTGCCTGAA-GACGGTCAGTGGTAGGGTGTAAGT
* *
13979098 GGCTGTTTAAGTTAAAAAAGAATCCTGACGAGTCTATCAGTCGATACAAGGCTCGTCTTGTAGCC
129 GGCTGTCTAAGTTAAAAAAGAATCCTGACGAGTCTATCAGTCGATACAAGGCTCGCCTTGTAGCC
* *
13979163 AAAGGGTACTCACATGTTCCAGGTCACGATTTTAATGAGGCATTCATTCCAGTAGTTAAGTTTAC
194 AAAGGGTACTCACAAGTTCCAGGTCACGATTTTAATGAGACATTCATTCCAGTAGTTAAGTTTAC
*
13979228 CACATTGAATGTGGTTTTGGCTTTAGCTGTGACAAAGGGCTGGAAGCTGCGACAGATTGATGTA
259 CACATTGAATGTGGTTTTGACTTTAGCTGTGACAAAGGGCTGGAAGCTGCGACAGATTGATGTA
13979292 AACAATGCAT
1 AACAA-GCAT
13979302 TTTTACATGG
Statistics
Matches: 314, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
322 58 0.18
323 43 0.14
324 209 0.67
325 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (322 bp):
AACAAGCATGAAGCTCTTCAGTCACCTCATTGGAGAAATGCACTTTATGCTGAACTTGAACCTTA
CAAAAGAATGATACATGGTCTCTAGTGCCTTTGCCTGAAGACGGTCAGTGGTAGGGTGTAAGTGG
CTGTCTAAGTTAAAAAAGAATCCTGACGAGTCTATCAGTCGATACAAGGCTCGCCTTGTAGCCAA
AGGGTACTCACAAGTTCCAGGTCACGATTTTAATGAGACATTCATTCCAGTAGTTAAGTTTACCA
CATTGAATGTGGTTTTGACTTTAGCTGTGACAAAGGGCTGGAAGCTGCGACAGATTGATGTA
Found at i:13984816 original size:17 final size:17
Alignment explanation
Indices: 13984794--13984826 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13984784 TATACAACAA
13984794 TTTGACCAC-CAAACATG
1 TTTGA-CACTCAAACATG
13984811 TTTGACACTCAAACAT
1 TTTGACACTCAAACAT
13984827 ACTTAACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.27
Consensus pattern (17 bp):
TTTGACACTCAAACATG
Found at i:13991407 original size:163 final size:165
Alignment explanation
Indices: 13991122--13991465 Score: 647
Period size: 163 Copynumber: 2.1 Consensus size: 165
13991112 TTAATGTGAC
* *
13991122 ATCTATAACACATATTTTGAGACGTATATGGGTTATGGGTGTTACACAATTCGTTTCAATCAATT
1 ATCT-TAAGACATACTTTGAGACGTATATGGGTTATGGGTGTTACACAATTCGTTTCAATCAATT
13991187 ATTCTATCAAGAACATGTATTTATTTCTATACTATTCCTTTCGATTATTTGAATAAGATTTTC-T
65 ATTCTATCAAGAACATGTATTTATTTCTATACTATTCCTTTCGATTATTTGAATAAGATTTTCTT
13991251 TTTA-TTTATCGTCTCAGATTGTTATACTTCTAACA
130 TTTATTTTATCGTCTCAGATTGTTATACTTCTAACA
13991286 ATCTTAAGACATACTTTGAGACGTATATGGGTTATGGGTGTTACACAATTCGTTTCAATCAATTA
1 ATCTTAAGACATACTTTGAGACGTATATGGGTTATGGGTGTTACACAATTCGTTTCAATCAATTA
13991351 TTCTATCAAGAACATGTATTTATTTCTATACTATTCCTTTCGATTATTTGAATAAGATTTTCTTT
66 TTCTATCAAGAACATGTATTTATTTCTATACTATTCCTTTCGATTATTTGAATAAGATTTTCTTT
13991416 TTATTTTATCGTCTCAGATTGTTATACTTCTAACA
131 TTATTTTATCGTCTCAGATTGTTATACTTCTAACA
13991451 ATCTTAAGACATACT
1 ATCTTAAGACATACT
13991466 CTATCTTCTA
Statistics
Matches: 176, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
163 121 0.69
164 9 0.05
165 46 0.26
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (165 bp):
ATCTTAAGACATACTTTGAGACGTATATGGGTTATGGGTGTTACACAATTCGTTTCAATCAATTA
TTCTATCAAGAACATGTATTTATTTCTATACTATTCCTTTCGATTATTTGAATAAGATTTTCTTT
TTATTTTATCGTCTCAGATTGTTATACTTCTAACA
Found at i:13992347 original size:31 final size:32
Alignment explanation
Indices: 13992300--13992373 Score: 105
Period size: 31 Copynumber: 2.3 Consensus size: 32
13992290 ATTAACTCTT
* * *
13992300 AGTGACCACATTTTAATTAAATAAAAACAAA-
1 AGTGACCAAATCTTAATTAAATAAAAAAAAAG
*
13992331 AGTGATCAAATCTTAATTAAATAAAAAAAAAG
1 AGTGACCAAATCTTAATTAAATAAAAAAAAAG
13992363 AGTGACCAAAT
1 AGTGACCAAAT
13992374 ATTATATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 27 0.73
32 10 0.27
ACGTcount: A:0.55, C:0.11, G:0.09, T:0.24
Consensus pattern (32 bp):
AGTGACCAAATCTTAATTAAATAAAAAAAAAG
Found at i:13992675 original size:14 final size:14
Alignment explanation
Indices: 13992656--13992682 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13992646 TGAAAACAAC
13992656 TCTCTATTGATAAT
1 TCTCTATTGATAAT
13992670 TCTCTATTGATAA
1 TCTCTATTGATAA
13992683 AAAAGAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (14 bp):
TCTCTATTGATAAT
Found at i:14001194 original size:39 final size:39
Alignment explanation
Indices: 14001158--14001235 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
14001148 CATTAATTCT
14001158 TTAA-TCATTAAAAACTATTAAAAATTATAAAATAATTA
1 TTAATTCATTAAAAACTATTAAAAATTATAAAATAATTA
* * *
14001196 TTAATTCTTTAACAATTATTAAAAATTATAAAATAATTA
1 TTAATTCATTAAAAACTATTAAAAATTATAAAATAATTA
14001235 T
1 T
14001236 ATGAATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 4 0.11
39 32 0.89
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (39 bp):
TTAATTCATTAAAAACTATTAAAAATTATAAAATAATTA
Found at i:14001195 original size:18 final size:18
Alignment explanation
Indices: 14001174--14001234 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
14001164 ATTAAAAACT
14001174 ATTAAAAATTATAAAATA
1 ATTAAAAATTATAAAATA
* * * *
14001192 ATTATTAATTCTTTAACAATT
1 ATTA-AAAAT-TATAA-AATA
14001213 ATTAAAAATTATAAAATA
1 ATTAAAAATTATAAAATA
14001231 ATTA
1 ATTA
14001235 TATGAATATA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 11 0.34
19 7 0.22
20 7 0.22
21 7 0.22
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAAAATTATAAAATA
Found at i:14001199 original size:21 final size:21
Alignment explanation
Indices: 14001173--14001235 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
14001163 CATTAAAAAC
14001173 TATTAAAAATTATAAAATAAT
1 TATTAAAAATTATAAAATAAT
* ** *
14001194 TATT---AATTCTTTAACAAT
1 TATTAAAAATTATAAAATAAT
14001212 TATTAAAAATTATAAAATAAT
1 TATTAAAAATTATAAAATAAT
14001233 TAT
1 TAT
14001236 ATGAATATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
18 14 0.45
21 17 0.55
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTAAAAATTATAAAATAAT
Found at i:14001421 original size:30 final size:30
Alignment explanation
Indices: 14001382--14001445 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
14001372 ATAAAATGTT
*
14001382 AAATGTTAATTTACTGAATGTAATATTATA
1 AAATATTAATTTACTGAATGTAATATTATA
*
14001412 AAATATTAATTTGCTGAATGTAATATTATA
1 AAATATTAATTTACTGAATGTAATATTATA
14001442 AAAT
1 AAAT
14001446 TATATTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (30 bp):
AAATATTAATTTACTGAATGTAATATTATA
Found at i:14011572 original size:325 final size:323
Alignment explanation
Indices: 14010978--14011926 Score: 1446
Period size: 325 Copynumber: 2.9 Consensus size: 323
14010968 CACCCAACTA
* *
14010978 ACAGTCGTAGCCTTGGACAACCTTGTAACTGTTCAACAGATAACAAATTGTTATATGGAAATTAT
1 ACAGTCGTAGCCTTGGACAACCTTGTAACTGTTGAACGGATAACAAATTGTTATAT-G-AA--A-
* *
14011043 TTTATTTTTTTCGGTGATACAGGAAAATACAAAACAAAACTTAGTTTGTGGGATCTATGTCCCAG
61 -TTATTTTTTTCGGTGATACAGGAAAATACAAAACAAAACTTAGTTTATGGGATTTATGTCCCAG
** *
14011108 TCAACAAATGTTTCCACCTCCCTTGGAAGATTCAGATAAATCATAAAGCATATTGGGTCACCCTG
125 TCAACAAATGTAGCCACCTCCCTTGGAAGATTCAGATGAATCATAAAGCATATTGGGTCACCCTG
* *
14011173 ACAATAGTAGCAAGTTTATCTGTCACCCTTTTATTTTCTCAACTAATATGTCGTATCTTTGTTTC
190 ACAATAGTAGCAAGTTTATCTGTCACCCTTTTAGTTTCTAAACTAATATGTCGTATCTTTGTTTC
*
14011238 TCAATTTATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTATAAATTGTTATATATACATCC
255 TCAATTTATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTATAAATTGTTATATATACAGCC
14011303 TTGG
320 TTGG
* * *
14011307 ACAGTCGTAGCCTTGGACAGCCTCGTAACTGTTGAACGGATAATAAATTGTTATATAGAAATTAT
1 ACAGTCGTAGCCTTGGACAACCTTGTAACTGTTGAACGGATAACAAATTGTTATAT-GAAATTAT
*
14011372 TTTTTTCGGTGATACAGGAAAGGA-AAAAAACAAAACTTAGTTTATGGGATTTATGTCCCAGTCA
65 TTTTTTCGGTGATACAGGAAA--ATACAAAACAAAACTTAGTTTATGGGATTTATGTCCCAGTCA
*
14011436 ACAAATGTAGCCACCTCCCTTGGAAGATTCAGATGAATCATAATGCATATTGGGTCACCCTGACA
128 ACAAATGTAGCCACCTCCCTTGGAAGATTCAGATGAATCATAAAGCATATTGGGTCACCCTGACA
* * * *
14011501 ATAGTAGAAAGTTTATTTGTCACCCTTTTAGTTTCTGAACTAATATGTTGTATCTTTGTTTCTCA
193 ATAGTAGCAAGTTTATCTGTCACCCTTTTAGTTTCTAAACTAATATGTCGTATCTTTGTTTCTCA
* *
14011566 ATTTATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTACAAATTGTTATATGTACAGCCTTG
258 ATTTATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTATAAATTGTTATATATACAGCCTTG
14011631 G
323 G
* *
14011632 ATAGTCGTAGCCTTGGACAACCTTGTAACTGTTGAACGAATAACAAATTG-T-TAT---A-T-TT
1 ACAGTCGTAGCCTTGGACAACCTTGTAACTGTTGAACGGATAACAAATTGTTATATGAAATTATT
*
14011690 TTTTTCGGTGATACAGGAAAATACAAAACAAAACTTAGTTTTTGGGATTTATGTCCCAGTCAACA
66 TTTTTCGGTGATACAGGAAAATACAAAACAAAACTTAGTTTATGGGATTTATGTCCCAGTCAACA
* *
14011755 AATGTAGACACCTCCCTTGGAAGATTCAGATGAATCATAACGCATATTGGGTCACCCTGACAATA
131 AATGTAGCCACCTCCCTTGGAAGATTCAGATGAATCATAAAGCATATTGGGTCACCCTGACAATA
* ** * * *
14011820 GTAGCAAGTTTATCTGCCACCCTTTTAGCATCTAAACTAATATGTCATATATTTGTTTTTCAATT
196 GTAGCAAGTTTATCTGTCACCCTTTTAGTTTCTAAACTAATATGTCGTATCTTTGTTTCTCAATT
* * *
14011885 TATGTTATAAATACTCTCAATTAACTCTAAGGTGGTTATAAA
261 TATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTATAAA
14011927 ATAATATTTA
Statistics
Matches: 573, Mismatches: 44, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
315 1 0.00
316 197 0.34
317 22 0.04
318 1 0.00
319 1 0.00
323 3 0.01
324 26 0.05
325 266 0.46
326 2 0.00
328 2 0.00
329 52 0.09
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (323 bp):
ACAGTCGTAGCCTTGGACAACCTTGTAACTGTTGAACGGATAACAAATTGTTATATGAAATTATT
TTTTTCGGTGATACAGGAAAATACAAAACAAAACTTAGTTTATGGGATTTATGTCCCAGTCAACA
AATGTAGCCACCTCCCTTGGAAGATTCAGATGAATCATAAAGCATATTGGGTCACCCTGACAATA
GTAGCAAGTTTATCTGTCACCCTTTTAGTTTCTAAACTAATATGTCGTATCTTTGTTTCTCAATT
TATGTTCTAAATACTCTCAATTAACGCTAAGGTGATTATAAATTGTTATATATACAGCCTTGG
Found at i:14027501 original size:2 final size:2
Alignment explanation
Indices: 14027494--14027522 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14027484 CTCGCGTATG
14027494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14027523 CCAGTTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14028528 original size:24 final size:24
Alignment explanation
Indices: 14028471--14028517 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
14028461 TTAGCATGTT
*
14028471 TAAAAATA-AAATTTAAAATAAAA
1 TAAAAACAGAAATTTAAAATAAAA
14028494 TAAAAACAGAAATTTGAAAATAAA
1 TAAAAACAGAAATTT-AAAATAAA
14028518 GAAAAGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (24 bp):
TAAAAACAGAAATTTAAAATAAAA
Found at i:14034217 original size:42 final size:42
Alignment explanation
Indices: 14034164--14034287 Score: 176
Period size: 42 Copynumber: 3.0 Consensus size: 42
14034154 CCGTTAGACA
*
14034164 GGGGCAATCGGTACCCCTTGGGGGGGAATCTGTTCCCCCTAG
1 GGGGGAATCGGTACCCCTTGGGGGGGAATCTGTTCCCCCTAG
* * *
14034206 GGGGGAATCGGTACCTCTTGGGGGGAAATCTGTTCCCCCTGG
1 GGGGGAATCGGTACCCCTTGGGGGGGAATCTGTTCCCCCTAG
** * *
14034248 GGGGGAATCACTACCCCCTGGGGGGGAATCTGTACCCCCT
1 GGGGGAATCGGTACCCCTTGGGGGGGAATCTGTTCCCCCT
14034288 GGACATTCTA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
GGGGGAATCGGTACCCCTTGGGGGGGAATCTGTTCCCCCTAG
Found at i:14034286 original size:21 final size:21
Alignment explanation
Indices: 14034164--14034289 Score: 144
Period size: 21 Copynumber: 6.0 Consensus size: 21
14034154 CCGTTAGACA
* * *
14034164 GGGGCAATCGGTACCCCTTGG
1 GGGGGAATCTGTACCCCCTGG
* *
14034185 GGGGGAATCTGTTCCCCCTAG
1 GGGGGAATCTGTACCCCCTGG
* * *
14034206 GGGGGAATCGGTACCTCTTGG
1 GGGGGAATCTGTACCCCCTGG
* *
14034227 GGGGAAATCTGTTCCCCCTGG
1 GGGGGAATCTGTACCCCCTGG
**
14034248 GGGGGAATCACTACCCCCTGG
1 GGGGGAATCTGTACCCCCTGG
14034269 GGGGGAATCTGTACCCCCTGG
1 GGGGGAATCTGTACCCCCTGG
14034290 ACATTCTATT
Statistics
Matches: 84, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 84 1.00
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (21 bp):
GGGGGAATCTGTACCCCCTGG
Found at i:14040928 original size:24 final size:24
Alignment explanation
Indices: 14040911--14040998 Score: 79
Period size: 24 Copynumber: 3.7 Consensus size: 24
14040901 ATCATAAAAT
*
14040911 AATCCAGGTCAAGTATCAGATCAA
1 AATCCAGGTCAAGTATCAGATAAA
* * *
14040935 AATCCAGGTTAAGTATTCA-ATCAG
1 AATCCAGGTCAAGTA-TCAGATAAA
* * * *
14040959 AATTCAGGTCAAGTATCCGATCAG
1 AATCCAGGTCAAGTATCAGATAAA
*
14040983 AATCCAGGTCAGGTAT
1 AATCCAGGTCAAGTAT
14040999 TATAATATAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
23 2 0.04
24 50 0.91
25 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATAAA
Found at i:14042150 original size:18 final size:18
Alignment explanation
Indices: 14042129--14042163 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14042119 TTCCATACGG
*
14042129 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
14042147 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
14042164 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:14047022 original size:27 final size:26
Alignment explanation
Indices: 14046980--14047031 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
14046970 TTCCAGAAGG
*
14046980 TGCTGACTAGATCTTCTAGAAAACTGC
1 TGCTGACTAGACCTTCTA-AAAACTGC
*
14047007 TGCTGACTGGACCTTCTAAAAACTG
1 TGCTGACTAGACCTTCTAAAAACTG
14047032 TCAAGTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
TGCTGACTAGACCTTCTAAAAACTGC
Found at i:14052002 original size:3 final size:3
Alignment explanation
Indices: 14051994--14052038 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
14051984 TATCTTACCA
14051994 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14052039 GAAAATTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:14055737 original size:19 final size:19
Alignment explanation
Indices: 14055713--14055764 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
14055703 AATGTATTTC
* *
14055713 ATGCATCGATGCACATATT
1 ATGCATTGATGCACATACT
*
14055732 ATGCATTGATACACATACT
1 ATGCATTGATGCACATACT
14055751 ATGCATTGATGCAC
1 ATGCATTGATGCAC
14055765 TCAGAGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (19 bp):
ATGCATTGATGCACATACT
Found at i:14055802 original size:65 final size:65
Alignment explanation
Indices: 14055732--14055869 Score: 156
Period size: 65 Copynumber: 2.1 Consensus size: 65
14055722 TGCACATATT
* * *
14055732 ATGCATTGATACA-CATACTATGCATTGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCAT
1 ATGCATCGATACACCA-ACCATGCATCGATGCACTCAG-GCTATTTATG-AAACATCGAATGCAT
*
14055794 TTG
63 TTC
* * * *
14055797 ATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTTGAAACATCGAATGCATTTC
1 ATGCATCGATACACCAACCATGCATCGATGCACTCAGGCTATTTATGAAACATCGAATGCATTTC
14055862 ATGCATCG
1 ATGCATCG
14055870 CTGCACTCTT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
64 1 0.02
65 54 0.87
66 7 0.11
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (65 bp):
ATGCATCGATACACCAACCATGCATCGATGCACTCAGGCTATTTATGAAACATCGAATGCATTTC
Found at i:14057299 original size:219 final size:220
Alignment explanation
Indices: 14056920--14057358 Score: 871
Period size: 219 Copynumber: 2.0 Consensus size: 220
14056910 AAGCCATCCA
14056920 TATCATATTTTGTGCTCTTGGACCAGATGAATATGGAAGAGTTTCATCTTGTACAACCGCCAAAG
1 TATCATATTTTGTGCTCTTGGACCAGATGAATATGGAAGAGTTTCATCTTGTACAACCGCCAAAG
14056985 AAATATGGGATAAACTACAAGTCACTCATGAAGGCACCGACGAGGTAAAAGAATCTAAAATTAGT
66 AAATATGGGATAAACTACAAGTCACTCATGAAGGCACCGACGAGGTAAAAGAATCTAAAATTAGT
14057050 CTTCTAACACATAGCTATGAAAATTTCAGGATGAAACCAAATGAAGATATCAAAGCTATGACGGA
131 CTTCTAACACATAGCTATGAAAATTTCAGGATGAAACCAAATGAAGATATCAAAGCTATGACGGA
14057115 TAGATTCTCAACGA-TTTCAATGGT
196 TAGATTCTCAACGATTTTCAATGGT
14057139 TATCATATTTTGTGCTCTTGGACCAGATGAATATGGAAGAGTTTCATCTTGTACAACCGCCAAAG
1 TATCATATTTTGTGCTCTTGGACCAGATGAATATGGAAGAGTTTCATCTTGTACAACCGCCAAAG
14057204 AAATATGGGATAAACTACAAGTCACTCATGAAGGCACCGACGAGGTAAAAGAATCTAAAATTAGT
66 AAATATGGGATAAACTACAAGTCACTCATGAAGGCACCGACGAGGTAAAAGAATCTAAAATTAGT
14057269 CTTCTAACACATAGCTATGAAAATTTCAGGATGAAACCAAATGAAGATATCAAAGCTATGACGGA
131 CTTCTAACACATAGCTATGAAAATTTCAGGATGAAACCAAATGAAGATATCAAAGCTATGACGGA
14057334 TAGATTCTCAACGATTTTCAATGGT
196 TAGATTCTCAACGATTTTCAATGGT
14057359 CTCAAATCAT
Statistics
Matches: 219, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
219 209 0.95
220 10 0.05
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (220 bp):
TATCATATTTTGTGCTCTTGGACCAGATGAATATGGAAGAGTTTCATCTTGTACAACCGCCAAAG
AAATATGGGATAAACTACAAGTCACTCATGAAGGCACCGACGAGGTAAAAGAATCTAAAATTAGT
CTTCTAACACATAGCTATGAAAATTTCAGGATGAAACCAAATGAAGATATCAAAGCTATGACGGA
TAGATTCTCAACGATTTTCAATGGT
Found at i:14057817 original size:19 final size:19
Alignment explanation
Indices: 14057793--14057830 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14057783 AAAAGCCAGG
14057793 GCATGTCAAATATGATTGC
1 GCATGTCAAATATGATTGC
14057812 GCATGTCAAATATGATTGC
1 GCATGTCAAATATGATTGC
14057831 CCACAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (19 bp):
GCATGTCAAATATGATTGC
Found at i:14057839 original size:16 final size:17
Alignment explanation
Indices: 14057798--14057839 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
14057788 CCAGGGCATG
*
14057798 TCAAATATGATTGCGCA
1 TCAAATATGATTGCCCA
14057815 TGTCAAATATGATTGCCCA
1 --TCAAATATGATTGCCCA
14057834 -CAAATA
1 TCAAATA
14057840 AGCATCTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
19 16 0.73
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (17 bp):
TCAAATATGATTGCCCA
Found at i:14059678 original size:46 final size:45
Alignment explanation
Indices: 14059580--14059685 Score: 133
Period size: 45 Copynumber: 2.3 Consensus size: 45
14059570 GTGCACTAAG
* * *
14059580 AGTGCATTGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAG
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAC
* *
14059625 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTC
1 AGTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCAC
*
14059671 AGTGCATCGGTGCAT
1 AGTGCATCGATGCAT
14059686 GGTATGTGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
45 28 0.53
46 22 0.42
47 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (45 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAC
Found at i:14059760 original size:65 final size:63
Alignment explanation
Indices: 14059626--14059771 Score: 163
Period size: 65 Copynumber: 2.3 Consensus size: 63
14059616 AATAGCCAGA
*
14059626 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGGTAT
* **
14059691 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGG-A
1 GTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGGTA
14059753 TT
63 -T
*
14059755 GGTGCATCGGTGCATCA
1 -GTGCATCGATGCATCA
14059772 CTCTGAAAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.04
63 4 0.06
64 21 0.30
65 42 0.60
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTAT
Found at i:14060212 original size:2 final size:2
Alignment explanation
Indices: 14060200--14060250 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
14060190 AATTGATTAA
*
14060200 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14060242 AT AT AT AT A
1 AT AT AT AT A
14060251 GCTTAAGCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14062420 original size:44 final size:44
Alignment explanation
Indices: 14062336--14062440 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
14062326 CCAAAACCCG
* * *
14062336 ACGGATGCATCGATGCATGACCATGTGCATCGATGCACATTC-A
1 ACGGATGCATCGATGCATCAACATGTGAATCGATGCACATTCAA
*
14062379 A-GGCGTGCATCGATGCATCAACATGATGAATCGATGCACATTCAA
1 ACGG-ATGCATCGATGCATCAACATG-TGAATCGATGCACATTCAA
14062424 ACGGATGCATCGATGCA
1 ACGGATGCATCGATGCA
14062441 CTATTAAGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
42 2 0.04
43 19 0.36
44 16 0.30
45 14 0.26
46 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (44 bp):
ACGGATGCATCGATGCATCAACATGTGAATCGATGCACATTCAA
Found at i:14066313 original size:22 final size:21
Alignment explanation
Indices: 14066272--14066314 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14066262 GAGTTTATTT
*
14066272 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTCAAACA
14066293 TCATTTTT-ATATTTTACAAACA
1 TCATTTTTCA-ATTTT-CAAACA
14066315 ATTTCTCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 1 0.05
21 13 0.68
22 5 0.26
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (21 bp):
TCATTTTTCAATTTTCAAACA
Found at i:14068428 original size:65 final size:63
Alignment explanation
Indices: 14068257--14068440 Score: 187
Period size: 65 Copynumber: 2.8 Consensus size: 63
14068247 GTACTAAGAG
* * * *
14068257 TGCATCAAGTGCATTCGATATTTCA-AAATAGC-CAGAGTGCATCGATGCATGGATGTTGCATCG
1 TGCATCAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCATCGATGCATGGATGTTGCATCA
14068320 A
63 A
*
14068321 TGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTATGTTGCATCA
1 TGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGG-ATGTTGCATCA
14068386 A
63 A
* **
14068387 TGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGGAT
1 TGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGGAT
14068441 TGGTACATCG
Statistics
Matches: 103, Mismatches: 9, Indels: 16
0.80 0.07 0.12
Matches are distributed among these distances:
63 3 0.03
64 23 0.22
65 42 0.41
66 34 0.33
67 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (63 bp):
TGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGATGTTGCATCAA
Found at i:14071629 original size:23 final size:22
Alignment explanation
Indices: 14071558--14071638 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 22
14071548 ACACTTAACA
14071558 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCA-CCC-TTGAAT
* * *
14071582 GTGCATCGATACA-CCATGAAG
1 GTGCATCGATGCACCCTTGAAT
*
14071603 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCAC-CCTTGAAT
14071626 GTGCATCGATGCA
1 GTGCATCGATGCA
14071639 TAAGGCCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
21 15 0.32
22 2 0.04
23 18 0.38
24 12 0.26
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACCCTTGAAT
Found at i:14072123 original size:2 final size:2
Alignment explanation
Indices: 14072116--14072152 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14072106 TGTTGTTTTC
14072116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14072153 TATGATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:14073627 original size:29 final size:28
Alignment explanation
Indices: 14073595--14073649 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
14073585 AGATGTTTAA
14073595 ATTTGATGGTTGT-TGGATGTTTTGAACTT
1 ATTTG-TGGTTGTATGGAT-TTTTGAACTT
* *
14073624 ATTTGTTGTTTTATGGATTTTTGAAC
1 ATTTGTGGTTGTATGGATTTTTGAAC
14073650 ATAATATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.55
Consensus pattern (28 bp):
ATTTGTGGTTGTATGGATTTTTGAACTT
Found at i:14074019 original size:36 final size:37
Alignment explanation
Indices: 14073946--14074021 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
14073936 TGTTAAAATG
*
14073946 TTTTAAAGGGGAGAAGTGTTAAAGTAAAGGGGGGTAA
1 TTTTAAAGGGGAGAAATGTTAAAGTAAAGGGGGGTAA
14073983 TTTTAAAGGGGAGAAATGTTAAAGT-AAGGGGGGTAA
1 TTTTAAAGGGGAGAAATGTTAAAGTAAAGGGGGGTAA
14074019 TTT
1 TTT
14074022 CAAACTTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 14 0.37
37 24 0.63
ACGTcount: A:0.37, C:0.00, G:0.36, T:0.28
Consensus pattern (37 bp):
TTTTAAAGGGGAGAAATGTTAAAGTAAAGGGGGGTAA
Found at i:14074060 original size:18 final size:17
Alignment explanation
Indices: 14074027--14074061 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14074017 AATTTCAAAC
14074027 TTAATTTTTAAAAAAAA
1 TTAATTTTTAAAAAAAA
*
14074044 TTAATTTTTAAAGAAAA
1 TTAATTTTTAAAAAAAA
14074061 T
1 T
14074062 CTTAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TTAATTTTTAAAAAAAA
Found at i:14077805 original size:17 final size:17
Alignment explanation
Indices: 14077780--14077819 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
14077770 GTATGTTGTT
*
14077780 CATTAAAGCATGCATTG
1 CATTTAAGCATGCATTG
* *
14077797 CATTTAAGCATGTATTT
1 CATTTAAGCATGCATTG
14077814 CATTTA
1 CATTTA
14077820 GGGAAGTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (17 bp):
CATTTAAGCATGCATTG
Found at i:14077846 original size:17 final size:17
Alignment explanation
Indices: 14077826--14077884 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
14077816 TTTAGGGAAG
14077826 TAGTTCATTTATGCATC
1 TAGTTCATTTATGCATC
* *
14077843 TAGTT-ATTTAAT-AAAC
1 TAGTTCATTT-ATGCATC
* * *
14077859 TAATTCATTCATGCATT
1 TAGTTCATTTATGCATC
14077876 TAGTTCATT
1 TAGTTCATT
14077885 GAATAAAGTT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (17 bp):
TAGTTCATTTATGCATC
Found at i:14077898 original size:18 final size:18
Alignment explanation
Indices: 14077875--14077920 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
14077865 ATTCATGCAT
14077875 TTAGTTCATTGAATAAAG
1 TTAGTTCATTGAATAAAG
*
14077893 TTAGTTCATTGAATAATG
1 TTAGTTCATTGAATAAAG
*
14077911 TTATTTCATT
1 TTAGTTCATT
14077921 AATCAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (18 bp):
TTAGTTCATTGAATAAAG
Found at i:14091368 original size:15 final size:16
Alignment explanation
Indices: 14091340--14091371 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
14091330 AAAATCTTTC
14091340 TTTCCCGTTCTGGATT
1 TTTCCCGTTCTGGATT
14091356 TTTCCCG-TCTGGATT
1 TTTCCCGTTCTGGATT
14091371 T
1 T
14091372 GGATCTGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCCCGTTCTGGATT
Found at i:14092146 original size:16 final size:16
Alignment explanation
Indices: 14092122--14092155 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14092112 TATCGCCGAC
*
14092122 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
14092138 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
14092154 CG
1 CG
14092156 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:14093451 original size:36 final size:36
Alignment explanation
Indices: 14093149--14093443 Score: 419
Period size: 36 Copynumber: 8.2 Consensus size: 36
14093139 CCTGGACCAT
* *
14093149 GGAATGAAGCATCGACACTTCCGATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
14093185 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
* * *
14093221 AGAAGGAAGCATCAGTACTTCCGATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
* *
14093257 GAAAGAAAGCATCGGCACTTCCGATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
14093293 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
* * *
14093329 GGAATGAGGCATCGGCACTTCCAATTCAAGTCGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
* * * *
14093365 GGAAGGAAACATTGGCACTTCCGATTCAAGTTGAAT
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
* * * *
14093401 GGAAGTAAGTATCGACACTTCCGATTCAAGTTGAAC
1 GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
*
14093437 AGAAGGA
1 GGAAGGA
14093444 TGTATCGAGC
Statistics
Matches: 229, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 229 1.00
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (36 bp):
GGAAGGAAGCATCGGCACTTCCGATTCAAGTCGAAC
Found at i:14095764 original size:29 final size:29
Alignment explanation
Indices: 14095729--14095810 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
14095719 AAACTAAATT
*
14095729 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
14095758 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
14095787 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
14095811 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:14100527 original size:29 final size:29
Alignment explanation
Indices: 14100492--14100573 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
14100482 AAACTAAATT
*
14100492 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
14100521 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
14100550 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
14100574 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:14101605 original size:36 final size:36
Alignment explanation
Indices: 14101558--14101635 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
14101548 GAGTCAAATA
*
14101558 TCGAGTAGCTCGTTTCGGCTCGTTAAGAACTTGAGC
1 TCGAGTAGCTCGTTTCGGCTCGTTAAGAACTCGAGC
14101594 TCGAGTAGCTCGTTTCGGCTCGTTAAGAACTCGAGC
1 TCGAGTAGCTCGTTTCGGCTCGTTAAGAACTCGAGC
14101630 TCGAGT
1 TCGAGT
14101636 CGAGTCCATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.29
Consensus pattern (36 bp):
TCGAGTAGCTCGTTTCGGCTCGTTAAGAACTCGAGC
Found at i:14102750 original size:32 final size:33
Alignment explanation
Indices: 14102698--14102759 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
14102688 GGCGTGTATC
*
14102698 ATGTCATCACATTATGTACATATGACATATGTT
1 ATGTCAACACATTATGTACATATGACATATGTT
*
14102731 ATGTCAACAC-TTATGTACATGTGACATAT
1 ATGTCAACACATTATGTACATATGACATAT
14102760 AACACATCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (33 bp):
ATGTCAACACATTATGTACATATGACATATGTT
Found at i:14107557 original size:12 final size:12
Alignment explanation
Indices: 14107542--14107570 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14107532 TATATGTATG
14107542 AATATATTATAT
1 AATATATTATAT
14107554 AATATATTATAT
1 AATATATTATAT
14107566 AATAT
1 AATAT
14107571 GATAACGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATATATTATAT
Found at i:14108172 original size:105 final size:105
Alignment explanation
Indices: 14108049--14108424 Score: 716
Period size: 105 Copynumber: 3.6 Consensus size: 105
14108039 GTATTGTTCC
* *
14108049 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATATTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
14108114 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
14108154 GAGTCCAATATCCTTCGTTGTGAAGTTGAAAATGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
14108219 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
14108259 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
14108324 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
14108364 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCCTGAATTTGAGAAATGTTTGTTGA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGA
14108425 AGATATGCGT
Statistics
Matches: 266, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 266 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:14119925 original size:21 final size:20
Alignment explanation
Indices: 14119884--14119923 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14119874 AGAAATATAA
14119884 ATAATATCTATACATAAAAT
1 ATAATATCTATACATAAAAT
14119904 ATAATATACTATAGCATAAA
1 ATAATAT-CTATA-CATAAA
14119924 TAAAAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAATATCTATACATAAAAT
Found at i:14120652 original size:16 final size:16
Alignment explanation
Indices: 14120631--14120663 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14120621 TAATAAATAA
14120631 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
14120647 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
14120663 A
1 A
14120664 ATTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:14120754 original size:16 final size:16
Alignment explanation
Indices: 14120733--14120793 Score: 113
Period size: 16 Copynumber: 3.8 Consensus size: 16
14120723 TAATAAATAA
14120733 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
14120749 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
14120765 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
14120781 ACGAACATAAACG
1 ACGAACATAAACG
14120794 TTGGAGACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.56, C:0.23, G:0.13, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:14121817 original size:24 final size:24
Alignment explanation
Indices: 14121782--14121856 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
14121772 AAATTGGTTA
* *
14121782 AACATAAATGAATGAACATAAACG
1 AACATAACTGAACGAACATAAACG
14121806 AACATAACTGAACGAACATAAACG
1 AACATAACTGAACGAACATAAACG
* *
14121830 AACATAACCGAACGAACATAACCG
1 AACATAACTGAACGAACATAAACG
14121854 AAC
1 AAC
14121857 GTTCACGAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.55, C:0.21, G:0.12, T:0.12
Consensus pattern (24 bp):
AACATAACTGAACGAACATAAACG
Found at i:14121819 original size:14 final size:14
Alignment explanation
Indices: 14121802--14121857 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
14121792 AATGAACATA
*
14121802 AACGAACATAACTG
1 AACGAACATAACCG
14121816 AACGAACAT-A---
1 AACGAACATAACCG
14121826 AACGAACATAACCG
1 AACGAACATAACCG
14121840 AACGAACATAACCG
1 AACGAACATAACCG
14121854 AACG
1 AACG
14121858 TTCACGAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 27 0.71
ACGTcount: A:0.52, C:0.25, G:0.14, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:14121856 original size:10 final size:10
Alignment explanation
Indices: 14121795--14121842 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 10
14121785 ATAAATGAAT
14121795 GAACATAAAC
1 GAACATAAAC
14121805 GAACATAACTGAAC
1 GAACAT-A---AAC
14121819 GAACATAAAC
1 GAACATAAAC
*
14121829 GAACATAACC
1 GAACATAAAC
14121839 GAAC
1 GAAC
14121843 GAACATAACC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 22 0.67
11 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.54, C:0.23, G:0.12, T:0.10
Consensus pattern (10 bp):
GAACATAAAC
Found at i:14122579 original size:12 final size:12
Alignment explanation
Indices: 14122564--14122592 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14122554 TATATGTATG
14122564 AATATATTATAT
1 AATATATTATAT
14122576 AATATATTATAT
1 AATATATTATAT
14122588 AATAT
1 AATAT
14122593 GATAACGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATATATTATAT
Found at i:14126140 original size:16 final size:16
Alignment explanation
Indices: 14126115--14126147 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14126105 TAATAAATAA
*
14126115 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
14126131 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
14126147 A
1 A
14126148 AAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:14126241 original size:16 final size:16
Alignment explanation
Indices: 14126220--14126281 Score: 106
Period size: 16 Copynumber: 3.9 Consensus size: 16
14126210 TAAATAAACA
14126220 AACATAAACGAACACG
1 AACATAAACGAACACG
14126236 AACATAAACGAACACG
1 AACATAAACGAACACG
*
14126252 AACATAAATGAACACG
1 AACATAAACGAACACG
*
14126268 AACATAAACAAACA
1 AACATAAACGAACA
14126282 TCAACGTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.60, C:0.23, G:0.10, T:0.08
Consensus pattern (16 bp):
AACATAAACGAACACG
Found at i:14127295 original size:24 final size:24
Alignment explanation
Indices: 14127267--14127317 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
14127257 GATTGGGTTA
14127267 AACATAAAT-GAAAGAACATAAACG
1 AACAT-AATCGAAAGAACATAAACG
* *
14127291 AACATAATCGAACGAACATAACCG
1 AACATAATCGAAAGAACATAAACG
14127315 AAC
1 AAC
14127318 GAACATAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.57, C:0.20, G:0.12, T:0.12
Consensus pattern (24 bp):
AACATAATCGAAAGAACATAAACG
Found at i:14127304 original size:14 final size:14
Alignment explanation
Indices: 14127287--14127332 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
14127277 AAAGAACATA
*
14127287 AACGAACATAATCG
1 AACGAACATAACCG
14127301 AACGAACATAACCG
1 AACGAACATAACCG
14127315 AACGAACATAACCG
1 AACGAACATAACCG
14127329 AACG
1 AACG
14127333 TTCACGAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.50, C:0.26, G:0.15, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:14127806 original size:24 final size:24
Alignment explanation
Indices: 14127774--14127828 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
14127764 TCAGAATCGG
14127774 ATCGGTTAGCGAACCGGTCATGTT
1 ATCGGTTAGCGAACCGGTCATGTT
14127798 ATCGGTTAGCGAACCGGTCATGTT
1 ATCGGTTAGCGAACCGGTCATGTT
*
14127822 ACCGGTT
1 ATCGGTT
14127829 CATTAGTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (24 bp):
ATCGGTTAGCGAACCGGTCATGTT
Found at i:14128080 original size:14 final size:14
Alignment explanation
Indices: 14128063--14128089 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14128053 ATATTAAATA
14128063 ATAAATATAATTAT
1 ATAAATATAATTAT
14128077 ATAAATATAATTA
1 ATAAATATAATTA
14128090 AAAAATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATATAATTAT
Done.