Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 62 of 73
Found at i:14307120 original size:17 final size:17
Alignment explanation
Indices: 14307093--14307137 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
14307083 GTGGCATTTG
*
14307093 GCAGGGGATGGGCAACA
1 GCAGGGTATGGGCAACA
* *
14307110 TCAGGGTATGGGCAGCA
1 GCAGGGTATGGGCAACA
14307127 GCAGGGTATGG
1 GCAGGGTATGG
14307138 CCGGTTGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.47, T:0.13
Consensus pattern (17 bp):
GCAGGGTATGGGCAACA
Found at i:14307537 original size:13 final size:13
Alignment explanation
Indices: 14307519--14307554 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
14307509 TTGTTAATCG
*
14307519 TTGACTTTGACCA
1 TTGACTTTGACAA
14307532 TTGACTTTGACAA
1 TTGACTTTGACAA
*
14307545 TTGATTTTGA
1 TTGACTTTGA
14307555 GTCGACTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (13 bp):
TTGACTTTGACAA
Found at i:14320630 original size:21 final size:20
Alignment explanation
Indices: 14320606--14320686 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
14320596 AGAACCCCAT
* *
14320606 GGGGGTATCGATTCCCCTACA
1 GGGGGAATCGATTCCCTTA-A
*
14320627 GGGGGAATCGGTTCCCATTCAAA
1 GGGGGAATCGATTCCC-TT--AA
*
14320650 GGGGGAATC-AGTTCCCTTAT
1 GGGGGAATCGA-TTCCCTTAA
*
14320670 GGGGGTATCGATTCCCT
1 GGGGGAATCGATTCCCT
14320687 CTGCCAAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
20 15 0.31
21 15 0.31
22 3 0.06
23 15 0.31
24 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTTAA
Found at i:14326867 original size:19 final size:20
Alignment explanation
Indices: 14326829--14326868 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14326819 AACAAAGGTT
*
14326829 GTACCGATACTCCCTTTATTA
1 GTACCGATAC-CCCTCTATTA
14326850 GTACCGATA-CCCTCTATTA
1 GTACCGATACCCCTCTATTA
14326869 TGGGCAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (20 bp):
GTACCGATACCCCTCTATTA
Found at i:14330869 original size:21 final size:22
Alignment explanation
Indices: 14330821--14330873 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
14330811 TAGTTGAGGT
*
14330821 AGTATCGATACTCTTATATAGA
1 AGTATCGATACTCTAATATAGA
14330843 AGTATCGATACTCTAAT-TA-A
1 AGTATCGATACTCTAATATAGA
14330863 GAGTATCGATA
1 -AGTATCGATA
14330874 TTGAGCAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.03
21 12 0.41
22 16 0.55
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (22 bp):
AGTATCGATACTCTAATATAGA
Found at i:14342904 original size:23 final size:23
Alignment explanation
Indices: 14342877--14342923 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
14342867 AGAAAAAAAG
14342877 ATGTGATATAATAAAATAAAGAA
1 ATGTGATATAATAAAATAAAGAA
14342900 ATGTGATATAATAAAATAAAGAA
1 ATGTGATATAATAAAATAAAGAA
14342923 A
1 A
14342924 AACAATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (23 bp):
ATGTGATATAATAAAATAAAGAA
Found at i:14342930 original size:28 final size:27
Alignment explanation
Indices: 14342860--14342930 Score: 80
Period size: 23 Copynumber: 2.7 Consensus size: 27
14342850 TTAAAAAAAT
14342860 TAAAA-AAAGAAAAAAAGATGTGATATAA
1 TAAAATAAAG-AAAAAA-ATGTGATATAA
14342888 TAAAATAAAG----AAATGTGATATAA
1 TAAAATAAAGAAAAAAATGTGATATAA
14342911 TAAAATAAAGAAAAACAATG
1 TAAAATAAAGAAAAA-AATG
14342931 AATATTGGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
23 21 0.57
24 2 0.05
27 1 0.03
28 9 0.24
29 4 0.11
ACGTcount: A:0.66, C:0.01, G:0.13, T:0.20
Consensus pattern (27 bp):
TAAAATAAAGAAAAAAATGTGATATAA
Found at i:14344820 original size:31 final size:31
Alignment explanation
Indices: 14344753--14344820 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
14344743 CAACCCCCCA
*
14344753 ACATTTAGTCCGTTTATAATATGGTCCTTCG
1 ACATTTAGTCCGTTTATAATATGGTCATTCG
14344784 ACATTTAGTCCGTTTATAATATGGTCATT-G
1 ACATTTAGTCCGTTTATAATATGGTCATTCG
14344814 ACCATTT
1 A-CATTT
14344821 GACGCCGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 2 0.06
31 33 0.94
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43
Consensus pattern (31 bp):
ACATTTAGTCCGTTTATAATATGGTCATTCG
Found at i:14346782 original size:31 final size:31
Alignment explanation
Indices: 14346747--14346823 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
14346737 CGGTTACGTC
*
14346747 GGGACCATATTGCAAACAGACTAAATGTTGG
1 GGGACCATATTGCAAACAGACTAAATATTGG
*
14346778 GGGACCATATTACAAACAGACTAAATATTGG
1 GGGACCATATTGCAAACAGACTAAATATTGG
*
14346809 GGGACTATATTGCAA
1 GGGACCATATTGCAA
14346824 GTTTTAAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
GGGACCATATTGCAAACAGACTAAATATTGG
Found at i:14349203 original size:2 final size:2
Alignment explanation
Indices: 14349196--14349235 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
14349186 GATGTGTAAG
*
14349196 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT A- AGT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
14349236 TTGGCCATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14354576 original size:9 final size:9
Alignment explanation
Indices: 14354562--14354586 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14354552 TTCTGGTTTG
14354562 GTTCTTTTT
1 GTTCTTTTT
14354571 GTTCTTTTT
1 GTTCTTTTT
14354580 GTTCTTT
1 GTTCTTT
14354587 GACTCTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (9 bp):
GTTCTTTTT
Found at i:14357106 original size:64 final size:63
Alignment explanation
Indices: 14357038--14357218 Score: 209
Period size: 64 Copynumber: 2.8 Consensus size: 63
14357028 TTGGAACACT
* *** *
14357038 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAGAAATAGCC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGA-AAAAAGCC
** * **
14357102 TGATGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAAATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAAAGCC
* * * *
14357166 AGAGTGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 TGA-TGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTT
14357219 CAATTTATTC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
64 52 0.53
65 46 0.47
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (63 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAAAGCC
Found at i:14357190 original size:19 final size:19
Alignment explanation
Indices: 14357166--14357216 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
14357156 GAAAAAATTC
14357166 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
14357185 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
14357204 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
14357217 TTCAATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:14357192 original size:65 final size:65
Alignment explanation
Indices: 14357059--14357218 Score: 207
Period size: 65 Copynumber: 2.5 Consensus size: 65
14357049 TGCACCAAGT
* * ***
14357059 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAGAAATAGCCTGATGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAGAAAAAGCCAGATGCATCGATGCATGGAGA
* **
14357123 GTGCATCGATGCATCAAATGCATTCGATGTTTTGA-AAAAATTCAGAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAGAAAAAGCCAGA-TGCATCGATGCATGGAG
14357187 A
65 A
* *
14357188 GTGCATCGGTGCATGGAATGCATTCGATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
14357219 CAATTTATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 35 0.42
65 48 0.58
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAGAAAAAGCCAGATGCATCGATGCATGGAGA
Found at i:14363696 original size:22 final size:21
Alignment explanation
Indices: 14363654--14363693 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14363644 GAGTTTGTTT
*
14363654 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
14363675 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
14363694 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:14365688 original size:64 final size:63
Alignment explanation
Indices: 14365620--14365849 Score: 210
Period size: 64 Copynumber: 3.6 Consensus size: 63
14365610 TTGGAACACT
* *** *
14365620 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAGAAATAGCC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGA-AAAAAGCC
** * **
14365684 TGATGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAAATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAAAGCC
* * * * * * ** *
14365748 AGAGTGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCA
1 TGA-TGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAA-AAAAGCC
* *
14365812 TCGATGCATCGATGCATGGACTGATGCATCGGTGCATG
1 T-GATGCATCGATGCATGGAGTG-TGCATCGATGCATG
14365850 CCTTTGAATA
Statistics
Matches: 136, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
63 4 0.03
64 70 0.51
65 62 0.46
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (63 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAAAGCC
Found at i:14365772 original size:19 final size:19
Alignment explanation
Indices: 14365748--14365798 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
14365738 GAAAAAATTC
14365748 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
14365767 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
14365786 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
14365799 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:14365840 original size:65 final size:64
Alignment explanation
Indices: 14365642--14365849 Score: 210
Period size: 65 Copynumber: 3.2 Consensus size: 64
14365632 GCACCAAGTG
* * * ** *
14365642 TGCATCGATGCATGAAATGCATTCGATGTTTGAGAAATAGCCTGATGCATCGATGCATGG-CTTG
1 TGCATCGGTGCATGAAATGCATTCGATGTTTCA-AAAAATTCAGATGCATCGATGCATGGAC-TG
14365706 -
64 A
* * *
14365706 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAAATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAAAATTCAGA-TGCATCGATGCATGGACTG
14365769 A
64 A
* **
14365770 GTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCATCGATGCATCGATGCATGGACT
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAAATTCA--GATGCATCGATGCATGGACT
14365834 GA
63 GA
14365836 TGCATCGGTGCATG
1 TGCATCGGTGCATG
14365850 CCTTTGAATA
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
63 11 0.09
64 50 0.40
65 61 0.49
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (64 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAAATTCAGATGCATCGATGCATGGACTGA
Found at i:14372435 original size:35 final size:35
Alignment explanation
Indices: 14372396--14372463 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
14372386 TGAAATCATT
*
14372396 AAAAATAATTTAATATTCAAATTAT-AATTATAAGA
1 AAAAAT-ATTTAAGATTCAAATTATAAATTATAAGA
*
14372431 AAAAATATTTAAGATTTAAATTATAAATTATAA
1 AAAAATATTTAAGATTCAAATTATAAATTATAA
14372464 ATTTATCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (35 bp):
AAAAATATTTAAGATTCAAATTATAAATTATAAGA
Found at i:14373759 original size:28 final size:28
Alignment explanation
Indices: 14373712--14373766 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
14373702 TTCCATTTAC
* *
14373712 ATTATGTCGTCAAGCTAGTGCTTGAAAT
1 ATTATGTCATCAAGCCAGTGCTTGAAAT
*
14373740 ATTATGTCATCGAGCCAGTGCTTGAAA
1 ATTATGTCATCAAGCCAGTGCTTGAAA
14373767 GCAACGGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (28 bp):
ATTATGTCATCAAGCCAGTGCTTGAAAT
Found at i:14374062 original size:25 final size:25
Alignment explanation
Indices: 14374032--14374104 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
14374022 ATATACTTTA
14374032 ATCATTCTAGATTAGTATACTCTGG
1 ATCATTCTAGATTAGTATACTCTGG
**
14374057 ATCA---T---TTA-TATACT-TTA
1 ATCATTCTAGATTAGTATACTCTGG
*
14374074 ATCATTCTAGATTAGTATACTCGGG
1 ATCATTCTAGATTAGTATACTCTGG
14374099 ATCATT
1 ATCATT
14374105 TATATACTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 16
0.62 0.09 0.29
Matches are distributed among these distances:
17 5 0.14
18 6 0.17
19 3 0.09
20 1 0.03
22 1 0.03
23 3 0.09
24 6 0.17
25 10 0.29
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (25 bp):
ATCATTCTAGATTAGTATACTCTGG
Found at i:14374064 original size:42 final size:42
Alignment explanation
Indices: 14374005--14374131 Score: 218
Period size: 42 Copynumber: 3.0 Consensus size: 42
14373995 AACAACGTGA
* *
14374005 TATACTCGAGACCATTTATATACTTTAATCATTCTAGATTAG
1 TATACTCGGGATCATTTATATACTTTAATCATTCTAGATTAG
*
14374047 TATACTCTGGATCATTTATATACTTTAATCATTCTAGATTAG
1 TATACTCGGGATCATTTATATACTTTAATCATTCTAGATTAG
*
14374089 TATACTCGGGATCATTTATATACTTTAATCATTATAGATTAG
1 TATACTCGGGATCATTTATATACTTTAATCATTCTAGATTAG
14374131 T
1 T
14374132 GTCTGTAATT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.43
Consensus pattern (42 bp):
TATACTCGGGATCATTTATATACTTTAATCATTCTAGATTAG
Found at i:14380448 original size:8 final size:8
Alignment explanation
Indices: 14380435--14380475 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
14380425 CTCATTTTCA
14380435 GAGAATTT
1 GAGAATTT
14380443 GAGAATTT
1 GAGAATTT
*
14380451 -AGAGTTT
1 GAGAATTT
*
14380458 GGGAATTT
1 GAGAATTT
14380466 GAGAATTT
1 GAGAATTT
14380474 GA
1 GA
14380476 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:14380966 original size:128 final size:128
Alignment explanation
Indices: 14380556--14381033 Score: 850
Period size: 128 Copynumber: 3.7 Consensus size: 128
14380546 ACTATTCACA
*
14380556 TGAAGGCGCGTTCCCGGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
14380621 TTATGTAACTCATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
* *
14380684 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGTCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
14380749 TTATGTCACTCATTTCCCTCGGGGACA-TTTTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
*
14380811 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTTTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
14380876 TTGTGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
14380939 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
14381004 TTATGTCACTTATGTCCCTCGGTGACACTA
66 TTATGTCACTCATGTCCCTCGGGGACACTA
14381034 AATGGATTGT
Statistics
Matches: 332, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
127 121 0.36
128 211 0.64
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (128 bp):
TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
Found at i:14381007 original size:255 final size:255
Alignment explanation
Indices: 14380556--14381030 Score: 860
Period size: 255 Copynumber: 1.9 Consensus size: 255
14380546 ACTATTCACA
*
14380556 TGAAGGCGCGTTCCCGGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
14380621 TTATGTAACTCATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTG
66 TTATGTAACTCATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTG
* *
14380686 AAGGCGCGTTCCCGGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGTCCTATT
131 AAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATT
*
14380751 ATGTCACTCATTTCCCTCGGGGACATTTTCATATCAGTACCTATTATTTCTCAGGGGACT
196 ATGTCACTCATGTCCCTCGGGGACATTTTCATATCAGTACCTATTATTTCTCAGGGGACT
*
14380811 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTTTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* * *
14380876 TTGTGTCACTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTG
66 TTATGTAACTCATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTG
14380941 AAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATT
131 AAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATT
* *
14381006 ATGTCACTTATGTCCCTCGGTGACA
196 ATGTCACTCATGTCCCTCGGGGACA
14381031 CTAAATGGAT
Statistics
Matches: 210, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
255 210 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (255 bp):
TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTAACTCATGTCCCTCGGGAACACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTG
AAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATT
ATGTCACTCATGTCCCTCGGGGACATTTTCATATCAGTACCTATTATTTCTCAGGGGACT
Found at i:14381474 original size:34 final size:34
Alignment explanation
Indices: 14381436--14381505 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
14381426 AAATTTAATG
* *
14381436 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCAAATAATATAATTTATATTTTAAAT
* * *
14381470 TTAAATTTCAAATAATATTATTTTTTTTTTAAAT
1 TTAAATTTCAAATAATATAATTTATATTTTAAAT
14381504 TT
1 TT
14381506 TGAATAATCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (34 bp):
TTAAATTTCAAATAATATAATTTATATTTTAAAT
Found at i:14381520 original size:28 final size:28
Alignment explanation
Indices: 14381469--14381530 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
14381459 ATATTTTAAA
* * *
14381469 TTTAAATTTCAAATAATATTATTTTTTT
1 TTTAAATTTCAAATAATATAATTTGTAT
** *
14381497 TTTAAATTTTGAATAATCTAATTTGTAT
1 TTTAAATTTCAAATAATATAATTTGTAT
14381525 TTTAAA
1 TTTAAA
14381531 AACATTTATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.56
Consensus pattern (28 bp):
TTTAAATTTCAAATAATATAATTTGTAT
Found at i:14382074 original size:21 final size:20
Alignment explanation
Indices: 14382043--14382154 Score: 118
Period size: 21 Copynumber: 5.3 Consensus size: 20
14382033 GGTATAAAAC
* *
14382043 CCTGCGTGCTAGGCATGTAA
1 CCTGCGGGCTAGGAATGTAA
14382063 CCTGGCGGGCTAGGAATGTAA
1 CCT-GCGGGCTAGGAATGTAA
* *
14382084 CCCTGCGGGCTCGAAATGTAA
1 -CCTGCGGGCTAGGAATGTAA
14382105 CCTG-GTAGGCTAGGAATGTAA
1 CCTGCG--GGCTAGGAATGTAA
*
14382126 CCCTGCGGGCTCGGAATGTAA
1 -CCTGCGGGCTAGGAATGTAA
14382147 CCCTGCGG
1 -CCTGCGG
14382155 CATCGACGGA
Statistics
Matches: 79, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.01
20 7 0.09
21 63 0.80
22 7 0.09
23 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (20 bp):
CCTGCGGGCTAGGAATGTAA
Found at i:14382103 original size:42 final size:42
Alignment explanation
Indices: 14382057--14382148 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
14382047 CGTGCTAGGC
*
14382057 ATGTAACCTGGCGGGCTAGGAATGTAACCCTGCGGGCTCGAA
1 ATGTAACCTGGCAGGCTAGGAATGTAACCCTGCGGGCTCGAA
* *
14382099 ATGTAACCTGGTAGGCTAGGAATGTAACCCTGCGGGCTCGGA
1 ATGTAACCTGGCAGGCTAGGAATGTAACCCTGCGGGCTCGAA
14382141 ATGTAACC
1 ATGTAACC
14382149 CTGCGGCATC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.21
Consensus pattern (42 bp):
ATGTAACCTGGCAGGCTAGGAATGTAACCCTGCGGGCTCGAA
Found at i:14383690 original size:26 final size:27
Alignment explanation
Indices: 14383660--14383724 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
14383650 GTATCCTAAA
*
14383660 TAATATACATT-ATAAAAAATTAAAAT
1 TAATATAAATTCATAAAAAATTAAAAT
* * *
14383686 TAATATAAATTCATAATAACTTTAAAT
1 TAATATAAATTCATAAAAAATTAAAAT
*
14383713 TAAAAATAAATT
1 T-AATATAAATT
14383725 TAAATATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.31
27 13 0.41
28 9 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (27 bp):
TAATATAAATTCATAAAAAATTAAAAT
Found at i:14383713 original size:17 final size:17
Alignment explanation
Indices: 14383676--14383729 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
14383666 ACATTATAAA
* *
14383676 AAATT-AAAATTAATAT
1 AAATTAAAAATAAATTT
* * *
14383692 AAATTCATAATAACTTT
1 AAATTAAAAATAAATTT
14383709 AAATTAAAAATAAATTT
1 AAATTAAAAATAAATTT
14383726 AAAT
1 AAAT
14383730 ATTAACATTA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 5 0.17
17 25 0.83
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATTAAAAATAAATTT
Found at i:14383896 original size:19 final size:19
Alignment explanation
Indices: 14383872--14383930 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
14383862 TTAATAATTC
*
14383872 TAAATAAATAATAATTATA
1 TAAATAAATAATATTTATA
*
14383891 TAAAT--ATTAT-TTTA-A
1 TAAATAAATAATATTTATA
*
14383906 TAAAAAAATAATATTTATA
1 TAAATAAATAATATTTATA
14383925 TAAATA
1 TAAATA
14383931 TATTAATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
15 5 0.16
16 3 0.10
17 8 0.26
18 4 0.13
19 11 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAATAAATAATATTTATA
Found at i:14383944 original size:15 final size:15
Alignment explanation
Indices: 14383910--14383947 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14383900 TTTTAATAAA
*
14383910 AAAATAATATTTATAT
1 AAAAT-ATATTAATAT
14383926 -AAATATATTAATAT
1 AAAATATATTAATAT
14383940 AAAATATA
1 AAAATATA
14383948 ATAACTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATATATTAATAT
Found at i:14386819 original size:31 final size:31
Alignment explanation
Indices: 14386782--14386870 Score: 83
Period size: 31 Copynumber: 2.8 Consensus size: 31
14386772 GAAATTCATA
* *
14386782 TATTTTTGAATATTTTAAATTAAAAGATATT
1 TATTTTTGAATATTTAAAATTAAAAGATACT
* *
14386813 TATTTTT-TA-ATTTAAATATTAATAGGATACT
1 TATTTTTGAATATTTAAA-ATTAA-AAGATACT
*
14386844 TATTATTTTGAATATTTCAAATTAAAA
1 TA-T-TTTTGAATATTTAAAATTAAAA
14386871 TGTATTCATT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
29 6 0.13
30 6 0.13
31 15 0.33
32 1 0.02
33 5 0.11
34 6 0.13
35 6 0.13
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (31 bp):
TATTTTTGAATATTTAAAATTAAAAGATACT
Found at i:14387016 original size:69 final size:67
Alignment explanation
Indices: 14386780--14387045 Score: 244
Period size: 71 Copynumber: 3.9 Consensus size: 67
14386770 ATGAAATTCA
* * * * *
14386780 TATAT-TTTTGAATATTTTAAATTAAAAGATA-T--TTAT-TTTTTAATTTAAATATTAATAGGA
1 TATATCTTTTGAATATTTCAAATTAAAAGATATTCATTATCTATTTAATTTGAATATTAAAAGTA
14386840 TAC
66 T-C
* *
14386843 T-TATTATTTTGAATATTTCAAATTAAAATG-TATTCATTATCCATTTAACTTT-AATTATTAAA
1 TATA-TCTTTTGAATATTTCAAATTAAAA-GATATTCATTATCTATTTAA-TTTGAA-TATT--A
*
14386905 AAAATAGT-
60 AAAGTA-TC
* *
14386913 TATATCATTTTAAATATTTCAAATTAAAAGATATTCATTGTCTATTTAAGTTTGAATATTAAAAT
1 TATATC-TTTTGAATATTTCAAATTAAAAGATATTCATTATCTATTTAA-TTTGAATATTAAAA-
14386978 GTATC
63 GTATC
* * * *
14386983 TATATCTTTTGAATATTTCAAATTAAAATATATTTATTATCAATTAAATTTGAATATTAAAAG
1 TATATCTTTTGAATATTTCAAATTAAAAGATATTCATTATCTATTTAATTTGAATATTAAAAG
14387046 ATACATATTT
Statistics
Matches: 167, Mismatches: 18, Indels: 32
0.77 0.08 0.15
Matches are distributed among these distances:
62 2 0.01
63 2 0.01
64 23 0.14
65 2 0.01
67 5 0.03
68 21 0.13
69 48 0.29
70 11 0.07
71 50 0.30
72 3 0.02
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (67 bp):
TATATCTTTTGAATATTTCAAATTAAAAGATATTCATTATCTATTTAATTTGAATATTAAAAGTA
TC
Found at i:14387042 original size:34 final size:34
Alignment explanation
Indices: 14386864--14387044 Score: 111
Period size: 35 Copynumber: 5.2 Consensus size: 34
14386854 AATATTTCAA
* * *
14386864 ATTAAAATGTATTCATTATCCATTTAACTTT-AATT
1 ATTAAAATATATTTATTAT-CATTTAAATTTGAA-T
* * *
14386899 ATTAAAAAAATAGTTA-TATCATTTTAAATATTTCAA-
1 ATT-AAAATATATTTATTATCA-TTT-AA-ATTTGAAT
* * * *
14386935 ATTAAAAGATATTCATTGTCTATTTAAGTTTGAAT
1 ATTAAAATATATTTATTATC-ATTTAAATTTGAAT
* * * *
14386970 ATTAAAATGTATCTA-TATCTTTTGAATATTTCAA-
1 ATTAAAATATATTTATTATCATTT-AA-ATTTGAAT
*
14387004 ATTAAAATATATTTATTATCAATTAAATTTGAAT
1 ATTAAAATATATTTATTATCATTTAAATTTGAAT
14387038 ATTAAAA
1 ATTAAAA
14387045 GATACATATT
Statistics
Matches: 110, Mismatches: 24, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
33 9 0.08
34 34 0.31
35 42 0.38
36 19 0.17
37 4 0.04
38 2 0.02
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (34 bp):
ATTAAAATATATTTATTATCATTTAAATTTGAAT
Found at i:14390029 original size:17 final size:17
Alignment explanation
Indices: 14390007--14390044 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
14389997 TGGTTCAAAC
14390007 AAAGGGAATTTAGGCTA
1 AAAGGGAATTTAGGCTA
*
14390024 AAAGGGGATTTAGGCTA
1 AAAGGGAATTTAGGCTA
14390041 AAAG
1 AAAG
14390045 TGTCGGTACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21
Consensus pattern (17 bp):
AAAGGGAATTTAGGCTA
Found at i:14394398 original size:18 final size:18
Alignment explanation
Indices: 14394375--14394414 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14394365 TAAATCTTTG
*
14394375 AAGAACGACTTTCACTAT
1 AAGAACGAATTTCACTAT
*
14394393 AAGAACGAATTTCACTGT
1 AAGAACGAATTTCACTAT
14394411 AAGA
1 AAGA
14394415 GCCTTGTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (18 bp):
AAGAACGAATTTCACTAT
Found at i:14401552 original size:20 final size:20
Alignment explanation
Indices: 14401487--14401552 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
14401477 TTCTCAACTC
*
14401487 ATACTCATAGTGTAAGTATCG
1 ATACTCA-AGGGTAAGTATCG
* * *
14401508 ATACCCAAGGGTGAGTATAG
1 ATACTCAAGGGTAAGTATCG
*
14401528 ATACTCAAGGGTCAGTATCG
1 ATACTCAAGGGTAAGTATCG
14401548 ATACT
1 ATACT
14401553 ATGGGGCTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 32 0.84
21 6 0.16
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (20 bp):
ATACTCAAGGGTAAGTATCG
Found at i:14403640 original size:32 final size:33
Alignment explanation
Indices: 14403586--14403656 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 33
14403576 AAATTTAAAA
* *
14403586 TTATCATATATTTTTAATTTTTTCTTTGTATTT
1 TTATTATATATTTTTAAATTTTTCTTTGTATTT
14403619 TTATTATATA-TTTTAAATTTTTCTTTGTATTT
1 TTATTATATATTTTTAAATTTTTCTTTGTATTT
14403651 TT-TTAT
1 TTATTAT
14403657 TAAAAATATG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 4 0.11
32 23 0.64
33 9 0.25
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (33 bp):
TTATTATATATTTTTAAATTTTTCTTTGTATTT
Found at i:14405907 original size:32 final size:31
Alignment explanation
Indices: 14405860--14405946 Score: 95
Period size: 32 Copynumber: 2.8 Consensus size: 31
14405850 ATCAGGATCT
* *
14405860 AATTATTTT-TAATATTTGTTATTAATGATTT
1 AATT-TTTTCTAATATTTATTATTAATGATTC
* * * *
14405891 AATTTTTTCTCAATATTTAATATCATTGGTTC
1 AATTTTTTCT-AATATTTATTATTAATGATTC
14405923 AATTTTTTCTAATATTTATTATTA
1 AATTTTTTCTAATATTTATTATTA
14405947 GCGATGTACT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 4 0.09
31 17 0.37
32 25 0.54
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.59
Consensus pattern (31 bp):
AATTTTTTCTAATATTTATTATTAATGATTC
Found at i:14409713 original size:12 final size:12
Alignment explanation
Indices: 14409696--14409721 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14409686 ATGAAGAACC
14409696 AAACAACAACAA
1 AAACAACAACAA
14409708 AAACAACAACAA
1 AAACAACAACAA
14409720 AA
1 AA
14409722 CCCTATTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACAACAACAA
Found at i:14411130 original size:2 final size:2
Alignment explanation
Indices: 14411123--14411200 Score: 142
Period size: 2 Copynumber: 40.0 Consensus size: 2
14411113 CATTTTTGTC
14411123 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14411165 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14411201 GTTTGTAAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
1 2 0.03
2 72 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14411345 original size:37 final size:37
Alignment explanation
Indices: 14411183--14411489 Score: 239
Period size: 36 Copynumber: 8.2 Consensus size: 37
14411173 TAATATATAT
* *
14411183 ATATATATATATATTATAGTTTGT--AA-ATTTTTGAAA
1 ATATATATA-ATA-TATAGTTTTTAAAACATTTTAGAAA
* *
14411219 ATACATATATAATATATTGTTTCTAAAAACATTTT-G-AA
1 AT--ATATATAATATATAGTTT-TTAAAACATTTTAGAAA
14411257 A-ATATATAATATATAGTTTTTAAAACACTTTTA-AAA
1 ATATATATAATATATAGTTTTTAAAACA-TTTTAGAAA
*
14411293 A-CTATATAATATATAGTTTTTAAAACATTTTAGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTAGAAA
14411329 ATATATATAATATATAG-TTTTAAAATCATTTT-GAAA
1 ATATATATAATATATAGTTTTTAAAA-CATTTTAGAAA
*
14411365 A-ACTTATATAATATATAGTTTTTGAAAAAATTTTTTA-AAA
1 ATA--TATATAATATATAGTTTTT-AAAACA--TTTTAGAAA
* **
14411405 ACT-TATATAATATATAATTTTTGGAAATATTTTTTA-AAA
1 A-TATATATAATATATAGTTTTT--AAA-ACATTTTAGAAA
* * **
14411444 ATTTATATAATATATAATTTTTAAAAACATTTTTTAAA
1 ATATATATAATATATAGTTTTT-AAAACATTTTAGAAA
14411482 AT-TATATA
1 ATATATATA
14411490 GTTTTTAAAA
Statistics
Matches: 231, Mismatches: 15, Indels: 49
0.78 0.05 0.17
Matches are distributed among these distances:
34 7 0.03
35 27 0.12
36 54 0.23
37 48 0.21
38 24 0.10
39 53 0.23
40 17 0.07
41 1 0.00
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTTAAAACATTTTAGAAA
Found at i:14411477 original size:39 final size:37
Alignment explanation
Indices: 14411224--14411489 Score: 294
Period size: 39 Copynumber: 7.2 Consensus size: 37
14411214 TGAAAATACA
* * *
14411224 TATATAATATATTGTTTCTAAAAACA-TTTTGAAAA-
1 TATATAATATATAGTTTTTAAAAACATTTTTAAAAAT
* *
14411259 TATATAATATATAGTTTTT-AAAACACTTTTAAAAAC
1 TATATAATATATAGTTTTTAAAAACATTTTTAAAAAT
14411295 TATATAATATATAGTTTTT-AAAACA-TTTTAGAAAAT
1 TATATAATATATAGTTTTTAAAAACATTTTTA-AAAAT
* *
14411331 ATATATAATATATAG-TTTTAAAATCATTTTGAAAAACT
1 -TATATAATATATAGTTTTTAAAAACATTTTTAAAAA-T
14411369 TATATAATATATAGTTTTTGAAAAA-ATTTTTTAAAAACT
1 TATATAATATATAGTTTTT-AAAAACA-TTTTTAAAAA-T
* ** *
14411408 TATATAATATATAATTTTTGGAAATATTTTTTAAAAATT
1 TATATAATATATAGTTTTTAAAAACA-TTTTTAAAAA-T
* *
14411447 TATATAATATATAATTTTTAAAAACATTTTTTAAAAT
1 TATATAATATATAGTTTTTAAAAACATTTTTAAAAAT
14411484 TATATA
1 TATATA
14411490 GTTTTTAAAA
Statistics
Matches: 204, Mismatches: 16, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
34 6 0.03
35 30 0.15
36 33 0.16
37 44 0.22
38 22 0.11
39 69 0.34
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (37 bp):
TATATAATATATAGTTTTTAAAAACATTTTTAAAAAT
Found at i:14419331 original size:21 final size:20
Alignment explanation
Indices: 14419305--14419364 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 20
14419295 GTTCTTAAGG
*
14419305 AGTGGTCCTTCGGGACAAAT
1 AGTGGTCCTTTGGGACAAAT
*
14419325 CAGTGGTCCTTTGGG--ATAT
1 -AGTGGTCCTTTGGGACAAAT
14419344 AGTGGTCCTTTGGGACAAAT
1 AGTGGTCCTTTGGGACAAAT
14419364 A
1 A
14419365 TAAAGTGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 14 0.41
19 3 0.09
20 4 0.12
21 13 0.38
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (20 bp):
AGTGGTCCTTTGGGACAAAT
Found at i:14419776 original size:21 final size:21
Alignment explanation
Indices: 14419752--14419791 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14419742 TAATTGAGGA
14419752 AAAAGG-TATATAAATAAGTAT
1 AAAAGGATAT-TAAATAAGTAT
*
14419773 AAAAGGATATTAGATAAGT
1 AAAAGGATATTAAATAAGT
14419792 TGTGTAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (21 bp):
AAAAGGATATTAAATAAGTAT
Found at i:14424649 original size:18 final size:18
Alignment explanation
Indices: 14424626--14424660 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14424616 GTTCTTAAGG
14424626 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
14424644 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
14424661 AATATACAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:14425078 original size:21 final size:21
Alignment explanation
Indices: 14425052--14425091 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14425042 TTAATTGAGG
14425052 AAAAGG-TATATAAATAAGTAT
1 AAAAGGATAT-TAAATAAGTAT
*
14425073 AAAAGGATATTAGATAAGT
1 AAAAGGATATTAAATAAGT
14425092 TGTGTAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (21 bp):
AAAAGGATATTAAATAAGTAT
Found at i:14426158 original size:95 final size:94
Alignment explanation
Indices: 14425980--14426175 Score: 259
Period size: 95 Copynumber: 2.1 Consensus size: 94
14425970 TAATATTATA
* * *
14425980 TATATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCTGACTTTATGGA
1 TATATATAAAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCAGACTTTATGGA
* * *
14426045 TAATATTCGGCTAGCCTGATAAAGGTGAT
66 TAAGATTCAGCTAACCTGATAAAGGTGAT
* * * *
14426074 TATACTATAAAATAAAGTTTGAGTTGTCCTTCTA-AGGCAATTGGTTAAACATCCAGGCTTTATG
1 TATA-TATAAAATAAAGCTTGAGTTGTCCCTCTAGA-GCAATTGGTTAAACACCCAGACTTTATG
*
14426138 GATAAGATTCAGCTAACCTGATAAAGGTGTT
64 GATAAGATTCAGCTAACCTGATAAAGGTGAT
*
14426169 TACATAT
1 TATATAT
14426176 TGAGTTGTCC
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
94 8 0.09
95 80 0.91
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (94 bp):
TATATATAAAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCAGACTTTATGGA
TAAGATTCAGCTAACCTGATAAAGGTGAT
Found at i:14427513 original size:84 final size:83
Alignment explanation
Indices: 14427368--14428278 Score: 916
Period size: 84 Copynumber: 10.9 Consensus size: 83
14427358 TCTGTCAGAC
* * * *
14427368 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGTCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
14427433 AAGGGTTATCTGCCACCAA
66 AAGGGTTATCTGCCACC-A
* * *
14427452 AAGACATTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCGTTTGCAGCATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
14427517 AAGGGTTATCTGCCAACCA
66 AAGGGTTATCTGCC-ACCA
* * * *
14427536 AAGACCTTCGAGTTTGACTATGCTCAGCTCCAAGGCATATCATTTGCAGCATATCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
14427601 AAGGGCTATCTG---CCA
66 AAGGGTTATCTGCCACCA
* * * * * * * * * * * *
14427616 AAGACCCTCGACTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* *
14427681 GAAGGGTTATCTGTCACTAA
65 GAAGGGTTATCTGCCAC-CA
* * * * *
14427701 AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGAATATCATTTGCAGCATAACTTAAGTCAAA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
14427766 AAGGGTTATCTGCTAACCAA
66 AAGGGTTATCTGC-CACC-A
* * *
14427786 AAGACCTTCGAGTTCGACTACGCTTAGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
14427851 AAGGGCTATCTG---CCA
66 AAGGGTTATCTGCCACCA
* * * * * * ** * * * *
14427866 AAGACCCTCGAGTTCGATTACACTCAGTTTCGAGGGCACATCATTTAAAGCAAAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAG-CTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* *
14427931 GAAGGGTTATCTGTCAACAA
65 GAAGGGTTATCTG-CCACCA
* * * * *
14427951 AAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGGCACATCATTTGTAACATAGCTTAGGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
14428016 AATGGCTATCTGCCAACCA
66 AAGGGTTATCTGCC-ACCA
* * * * * * * * * * * *
14428035 AATAACTTCGAGTTTGATTACACTCAGCTTCGAGGGCATATTATTTGCAGCATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
*
14428100 GAAGGGTTATCTGCCAACA
65 GAAGGGTTATCTGCCACCA
* * * * *
14428119 AAGACCTTCGAGTTCGACTATGCTTAGCTCAAAGGCACATAATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * *
14428184 AAGGGCTATCTTCCAACA
66 AAGGGTTATCTGCCACCA
* * * * * * *
14428202 AATACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCGTAGCTTAAGGCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
*
14428267 AAGGGCTATCTG
66 AAGGGTTATCTG
14428279 TCAATAAAAT
Statistics
Matches: 673, Mismatches: 139, Indels: 31
0.80 0.16 0.04
Matches are distributed among these distances:
80 50 0.07
81 80 0.12
83 112 0.17
84 270 0.40
85 161 0.24
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (83 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
AAGGGTTATCTGCCACCA
Found at i:14427734 original size:165 final size:164
Alignment explanation
Indices: 14427350--14428278 Score: 690
Period size: 165 Copynumber: 5.6 Consensus size: 164
14427340 AGAATAACTC
* * * *
14427350 AAGGGTTGTCTGTCAGACAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
1 AAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGC
* * * * * * *
14427415 AACATAGCTCAAGTCTAGAAGGGTTATCTGCCACCAAAAGACATTCGAGTTCGACTACGCTCAGC
66 AGCATAACTTAAGTCAAGAAGGGTTATCTG---CCAAAAGACACTCGACTTCGACTACACTCAGC
* * * * * *
14427480 TCCAAGGCATATCGTTTGCAGCATAACTTAAGTCGAG
128 TCCAAGGCACATCATTTACAACATAACTCAAGGCGAG
* * * *
14427517 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTATGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
* * * * * *
14427582 CAGCATATCTTAAGTCGAGAAGGGCTATCTGCC-AAAGACCCTCGACTTTGATTACACTCAGCTT
65 CAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAAAGACACTCGACTTCGACTACACTCAGC-T
* * *
14427646 CGAGGGCACATCATTTACAACATAACTCAAGGCTAG
129 CCAAGGCACATCATTTACAACATAACTCAAGGCGAG
* *
14427682 AAGGGTTATCTGTCACTAAAAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGAATATCATTTG
1 AAGGGTTATCTGTCAC-AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
* * * *
14427747 CAGCATAACTTAAGTCAAAAAGGGTTATCTGCTAACCAAAAGAC-CTTCGAGTTCGACTACGCTT
65 CAGCATAACTTAAGTCAAGAAGGGTTATCTG----CCAAAAGACAC-TCGACTTCGACTACACTC
* * * * * *
14427811 AGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
125 AGCTCCAAGGCACATCATTTACAACATAACTCAAGGCGAG
* * * * * * * * *
14427851 AAGGGCTATCTG-C-C-AAAGACCCTCGAGTTCGATTACACTCAGTTTCGAGGGCACATCATTTA
1 AAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAG-CTCCAAGGCATATCATTTG
* * * * * * *
14427913 AAGCAAAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGAC-CTTCGAGTTCGACTACGCTCA
65 CAGCATAACTTAAGTCAAGAAGGGTTATCTG-C--CAAAAGACAC-TCGACTTCGACTACACTCA
* ** * *
14427977 GCTCAAAGGCACATCATTTGTAACATAGCT-TAGGTCGAG
126 GCTCCAAGGCACATCATTTACAACATAACTCAAGG-CGAG
* * * * * * * * * * * *
14428016 AATGGCTATCTGCCAACCAAATAACTTCGAGTTTGATTACACTCAGCTTCGAGGGCATATTATTT
1 AAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTT
* * * * ** *
14428081 GCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGAC-CTTCGAGTTCGACTATGCTTA
64 GCAGCATAACTTAAGTCAAGAAGGGTTATCTGCC-A-AAAGACAC-TCGACTTCGACTACACTCA
* * * * * * *
14428145 GCTCAAAGGCACATAATTTGCAGCATAGCTTAAGTCGAG
126 GCTCCAAGGCACATCATTTACAACATAACTCAAGGCGAG
* * * *
14428184 AAGGGCTATCT-TC-CAACAAATACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AAGGGTTATCTGTCAC-A-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * * * *
14428247 ACAGCGTAGCTTAAGGCAAGAAGGGCTATCTG
64 GCAGCATAACTTAAGTCAAGAAGGGTTATCTG
14428279 TCAATAAAAT
Statistics
Matches: 628, Mismatches: 111, Indels: 47
0.80 0.14 0.06
Matches are distributed among these distances:
163 1 0.00
164 27 0.04
165 208 0.33
166 79 0.13
167 39 0.06
168 139 0.22
169 113 0.18
170 22 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
AAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGC
AGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAAAGACACTCGACTTCGACTACACTCAGCTCC
AAGGCACATCATTTACAACATAACTCAAGGCGAG
Found at i:14427912 original size:250 final size:248
Alignment explanation
Indices: 14427368--14428278 Score: 1051
Period size: 250 Copynumber: 3.6 Consensus size: 248
14427358 TCTGTCAGAC
* * * * * *
14427368 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGTCTAG
1 AAGACCCTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATTTACAACATAACTCAAGGCTAG
* * * *
14427433 AAGGGTTATCTGCCACCAAAAGACATTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCGTTTG
66 AAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * *
14427498 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTTGACTATGCTCA
130 CAGCATAACTTAAGTCAAGAAGGGCTATCTGCCAACCAAAAGACCTTCGAGTTTGACTACGCTCA
*
14427562 GCTCCAAGGCATATCATTTGCAGCATATCTTAAGTCGAGAAGGGCTATCTGCCA
195 GCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCA
* * * *
14427616 AAGACCCTCGACTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTA
1 AAGACCCTCGAGTTCGACTACACTCAGC-TCGAAGGCACATCATTTACAACATAACTCAAGGCTA
* * *
14427681 GAAGGGTTATCTGTCACTAAAAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGAATATCATTT
65 GAAGGGTTATCTGTCAC-AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * *
14427746 GCAGCATAACTTAAGTCAAAAAGGGTTATCTGCTAACCAAAAGACCTTCGAGTTCGACTACGCTT
129 GCAGCATAACTTAAGTCAAGAAGGGCTATCTGCCAACCAAAAGACCTTCGAGTTTGACTACGCTC
* * *
14427811 AGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
194 AGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCA
* * * *
14427866 AAGACCCTCGAGTTCGATTACACTCAGTTTCGAGGGCACATCATTTA-AAGCAAAACTCAAGGCT
1 AAGACCCTCGAGTTCGACTACACTCAG-CTCGAAGGCACATCATTTACAA-CATAACTCAAGGCT
*
14427930 AGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAAGGCACATCATT
64 AGAAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * * * *
14427995 TGTAACATAGCTTAGGTCGAGAATGGCTATCTGCCAACCAAATA-A-CTTCGAGTTTGATTACAC
128 TGCAGCATAACTTAAGTCAAGAAGGGCTATCTGCCAACCAAA-AGACCTTCGAGTTTGACTACGC
* * * * * * *
14428058 TCAGCTTCGAGGGCATATTATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACA
192 TCAGC-TCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG-C--CA
* ** * * * * * * * * *
14428119 AAGACCTTCGAGTTCGACTATGCTTAGCTCAAAGGCACATAATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCCTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATTTACAACATAACTCAAGGCTAG
* * *
14428184 AAGGGCTATCT-TC-CAACAAATACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 AAGGGTTATCTGTCAC-A-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * *
14428247 ACAGCGTAGCTTAAGGCAAGAAGGGCTATCTG
129 GCAGCATAACTTAAGTCAAGAAGGGCTATCTG
14428279 TCAATAAAAT
Statistics
Matches: 567, Mismatches: 82, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
248 24 0.04
249 146 0.26
250 264 0.47
251 73 0.13
252 35 0.06
253 25 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (248 bp):
AAGACCCTCGAGTTCGACTACACTCAGCTCGAAGGCACATCATTTACAACATAACTCAAGGCTAG
AAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
AGCATAACTTAAGTCAAGAAGGGCTATCTGCCAACCAAAAGACCTTCGAGTTTGACTACGCTCAG
CTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCA
Found at i:14428921 original size:39 final size:38
Alignment explanation
Indices: 14428877--14429152 Score: 264
Period size: 37 Copynumber: 7.3 Consensus size: 38
14428867 TTGCAAACGG
*
14428877 TTTTTGAAAATACATATATAATATATAGTTTCTAAAAACA
1 TTTTTGAAAA-ACTTATATAATATATAGTTT-TAAAAACA
* *
14428917 -TTTTG-AAAA-TGTATATAATATGTAGTTTTTAAAACA
1 TTTTTGAAAAACT-TATATAATATATAGTTTTAAAAACA
* *
14428953 CTTTT-AAAAAC-TATATAATATATAGATTTT-AAATCA
1 TTTTTGAAAAACTTATATAATATATAG-TTTTAAAAACA
* *
14428989 TTTTAG-AAAA-TATATATAATATATAGTTTTAAAATCA
1 TTTTTGAAAAACT-TATATAATATATAGTTTTAAAAACA
*
14429026 -TTTTGAAAAACTTATATAATATATAGTTTTTGAAAACA
1 TTTTTGAAAAACTTATATAATATATAG-TTTTAAAAACA
* ** *
14429064 TTTTTTTAAAAACTTATATAATATATAGTTTTTGGAAATA
1 -TTTTTGAAAAACTTATATAATATATAG-TTTTAAAAACA
* * * *
14429104 TTTTTTAAAAATTTATATAATATATAATTTTTAAGAACA
1 TTTTTGAAAAACTTATATAATATAT-AGTTTTAAAAACA
14429143 TTTTTGAAAA
1 TTTTTGAAAA
14429153 TTATAGTTTT
Statistics
Matches: 201, Mismatches: 20, Indels: 31
0.80 0.08 0.12
Matches are distributed among these distances:
36 40 0.20
37 67 0.33
38 13 0.06
39 45 0.22
40 36 0.18
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (38 bp):
TTTTTGAAAAACTTATATAATATATAGTTTTAAAAACA
Found at i:14429201 original size:33 final size:31
Alignment explanation
Indices: 14429131--14429233 Score: 133
Period size: 33 Copynumber: 3.4 Consensus size: 31
14429121 TAATATATAA
*
14429131 TTTTT-AAGAACATTTTTGAAAA-TTATAG-
1 TTTTTAAAAAACATTTTTGAAAATTTATAGT
14429159 TTTTTAAAAAACATCTTTTGAAAATTATATAGT
1 TTTTTAAAAAACAT-TTTTGAAAATT-TATAGT
14429192 TTTTTAAAAAACCATTTTTGAAAATTTATA-T
1 TTTTTAAAAAA-CATTTTTGAAAATTTATAGT
*
14429223 ATTTTAAAAAA
1 TTTTTAAAAAA
14429234 AATATTTTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
28 5 0.07
29 7 0.10
30 9 0.13
31 12 0.18
32 9 0.13
33 22 0.33
34 3 0.04
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.46
Consensus pattern (31 bp):
TTTTTAAAAAACATTTTTGAAAATTTATAGT
Found at i:14429241 original size:32 final size:31
Alignment explanation
Indices: 14429142--14429256 Score: 110
Period size: 32 Copynumber: 3.6 Consensus size: 31
14429132 TTTTAAGAAC
*
14429142 ATTTTTGAAAATTATAGT-TTTTAAAAAACAT
1 ATTTTTGAAAATTATA-TATTTTAAAAAAAAT
* * **
14429173 -CTTTTGAAAATTATATAGTTTTTTAAAAAACC
1 ATTTTTGAAAATTATATA--TTTTAAAAAAAAT
14429205 ATTTTTGAAAATTTATATATTTTAAAAAAAAT
1 ATTTTTGAAAA-TTATATATTTTAAAAAAAAT
*
14429237 ATTTTTTAGAAATT-TATATT
1 ATTTTTGA-AAATTATATATT
14429257 ATATAGTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
29 1 0.01
30 14 0.21
31 6 0.09
32 28 0.41
33 12 0.18
34 7 0.10
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (31 bp):
ATTTTTGAAAATTATATATTTTAAAAAAAAT
Found at i:14429243 original size:33 final size:31
Alignment explanation
Indices: 14429139--14429255 Score: 107
Period size: 33 Copynumber: 3.7 Consensus size: 31
14429129 AATTTTTAAG
14429139 AACA-TTTTTGAAAATTATAGT-TTTT-AAAA
1 AACATTTTTTGAAAATTATA-TATTTTAAAAA
*
14429168 AACATCTTTTGAAAATTATATAGTTTTTTAAAAA
1 AACATTTTTTGAAAATTATATA---TTTTAAAAA
*
14429202 ACCA-TTTTTGAAAATTTATATATTTTAAAAAA
1 AACATTTTTTGAAAA-TTATATATTTT-AAAAA
* *
14429234 AATATTTTTTAGAAATTTATAT
1 AACATTTTTT-GAAAATTATAT
14429256 TATATAGTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
29 5 0.07
30 14 0.19
31 4 0.06
32 7 0.10
33 24 0.33
34 18 0.25
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.46
Consensus pattern (31 bp):
AACATTTTTTGAAAATTATATATTTTAAAAA
Found at i:14429303 original size:3 final size:3
Alignment explanation
Indices: 14429289--14429342 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
14429279 TTATATTTAT
* * *
14429289 TTA TTT TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14429337 CTTA TT
1 -TTA TT
14429343 TTTTATTTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:14429822 original size:31 final size:31
Alignment explanation
Indices: 14429766--14429824 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14429756 CCATCACAGA
*
14429766 GAAAAAAGAACCATCGACGAAAACATCAATC
1 GAAAAAAGAACCATCGAAGAAAACATCAATC
*
14429797 GAAAAATAGAACCATC-AAGACAACATCA
1 GAAAAA-AGAACCATCGAAGAAAACATCA
14429825 CAAACAACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.56, C:0.22, G:0.12, T:0.10
Consensus pattern (31 bp):
GAAAAAAGAACCATCGAAGAAAACATCAATC
Found at i:14430526 original size:16 final size:16
Alignment explanation
Indices: 14430516--14430562 Score: 94
Period size: 16 Copynumber: 2.9 Consensus size: 16
14430506 CTATTTCATT
14430516 TTTTTAATATTTGTTC
1 TTTTTAATATTTGTTC
14430532 TTTTTAATATTTGTTC
1 TTTTTAATATTTGTTC
14430548 TTTTTAATATTTGTT
1 TTTTTAATATTTGTT
14430563 TTTAGTATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.70
Consensus pattern (16 bp):
TTTTTAATATTTGTTC
Found at i:14435305 original size:41 final size:41
Alignment explanation
Indices: 14435260--14435524 Score: 399
Period size: 41 Copynumber: 6.5 Consensus size: 41
14435250 ATTCGCGCTG
* * *
14435260 CATTTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGGTTTTC
1 CATTTCGCGTTGCGATAGTCT-ACAGT-GTCGTTGCGATTTTC
* *
14435301 CATTTCGCGTTGTGATAGTCTACAGTGTCGTTGCGATTTTT
1 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
*
14435342 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGGTTTTC
1 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
*
14435383 CATTTCGCGTTGCGATAGTCTACAGTATCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
* *
14435424 CATTTCGCGTTGCGATAGTCTACAGTGTCATTGTGATTTTC
1 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
*
14435465 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGTGATTTTC
1 CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
*
14435506 CATTTCGTGTTGCGATAGT
1 CATTTCGCGTTGCGATAGT
14435525 TTTAAAAATG
Statistics
Matches: 207, Mismatches: 15, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
40 1 0.00
41 205 0.99
42 1 0.00
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
Found at i:14435354 original size:20 final size:20
Alignment explanation
Indices: 14435285--14435439 Score: 70
Period size: 20 Copynumber: 7.6 Consensus size: 20
14435275 TAGTTGAAAA
* *
14435285 TCGCGTTGCGGTTTTCCATT
1 TCGCGTTGCGATTTTACATT
* * *
14435305 TCGCGTTGTGATAGTCTACA-G
1 TCGCGTTGCGAT--TTTACATT
*
14435326 T-GTCGTTGCGATTTTTCATT
1 TCG-CGTTGCGATTTTACATT
* *
14435346 TCGCGTTGCGATAGTCTACA-G
1 TCGCGTTGCGAT--TTTACATT
* *
14435367 T-GTCGTTGCGGTTTTCCATT
1 TCG-CGTTGCGATTTTACATT
* *
14435387 TCGCGTTGCGATAGTCTACAGTA
1 TCGCGTTGCGAT--TTTACA-TT
*
14435410 T--CGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTACATT
14435428 TCGCGTTGCGAT
1 TCGCGTTGCGAT
14435440 AGTCTACAGT
Statistics
Matches: 97, Mismatches: 23, Indels: 30
0.65 0.15 0.20
Matches are distributed among these distances:
18 2 0.02
19 12 0.12
20 40 0.41
21 29 0.30
22 12 0.12
23 2 0.02
ACGTcount: A:0.13, C:0.21, G:0.25, T:0.41
Consensus pattern (20 bp):
TCGCGTTGCGATTTTACATT
Found at i:14435618 original size:6 final size:6
Alignment explanation
Indices: 14435607--14435676 Score: 119
Period size: 6 Copynumber: 12.2 Consensus size: 6
14435597 GACACGTATT
14435607 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
14435655 ACCACG ACC-CG ACC-CG A-CACG A
1 ACCACG ACCACG ACCACG ACCACG A
14435677 GACGACGGCG
Statistics
Matches: 63, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
4 1 0.02
5 11 0.17
6 51 0.81
ACGTcount: A:0.33, C:0.50, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:14436402 original size:6 final size:6
Alignment explanation
Indices: 14436391--14436421 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
14436381 CCATCTCGTC
14436391 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
14436422 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:14436567 original size:21 final size:21
Alignment explanation
Indices: 14436541--14436611 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
14436531 GAAATGGAAA
14436541 ATCGCAACGACACTGTAGACT
1 ATCGCAACGACACTGTAGACT
* **
14436562 ATCGCAACG-CGAAATG--GAAA
1 ATCGCAACGAC--ACTGTAGACT
14436582 ATCGCAACGACACTGTAGACT
1 ATCGCAACGACACTGTAGACT
14436603 ATCGCAACG
1 ATCGCAACG
14436612 CGATTTTCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 3 0.08
20 12 0.31
21 21 0.54
22 3 0.08
ACGTcount: A:0.37, C:0.27, G:0.21, T:0.15
Consensus pattern (21 bp):
ATCGCAACGACACTGTAGACT
Found at i:14436575 original size:41 final size:41
Alignment explanation
Indices: 14436517--14436614 Score: 187
Period size: 41 Copynumber: 2.4 Consensus size: 41
14436507 ATCGCAATGC
*
14436517 GACTATCGCAACACGAAATGGAAAATCGCAACGACACTGTA
1 GACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTA
14436558 GACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTA
1 GACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTA
14436599 GACTATCGCAACGCGA
1 GACTATCGCAACGCGA
14436615 TTTTCAACTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (41 bp):
GACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTA
Found at i:14436590 original size:20 final size:20
Alignment explanation
Indices: 14436521--14436590 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
14436511 CAATGCGACT
*
14436521 ATCGCAACACGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
* **
14436541 ATCGCAA--CGACACTGTAGACT
1 ATCGCAACGCGA-AATG--GAAA
14436562 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
14436582 ATCGCAACG
1 ATCGCAACG
14436591 ACACTGTAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 18 0.46
21 9 0.23
22 3 0.08
23 3 0.08
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:14436624 original size:21 final size:21
Alignment explanation
Indices: 14436600--14436676 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
14436590 GACACTGTAG
14436600 ACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
** **
14436621 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATTTTCA
* *
14436642 A-AACCGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
14436662 ACTATCGCAACGCGA
1 ACTATCGCAACGCGA
14436677 AATGCAGCGC
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 14 0.33
21 29 0.67
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (21 bp):
ACTATCGCAACGCGATTTTCA
Found at i:14437699 original size:25 final size:25
Alignment explanation
Indices: 14437671--14437727 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
14437661 TTTCATTATG
*
14437671 TTTTTATTAAATATT-TAATTTCATA
1 TTTTTAAT-AATATTATAATTTCATA
* * *
14437696 TTTTCAATAATTTTATAATTTTATA
1 TTTTTAATAATATTATAATTTCATA
14437721 TTTTTAA
1 TTTTTAA
14437728 ACTTTTAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTTAATAATATTATAATTTCATA
Found at i:14438371 original size:18 final size:18
Alignment explanation
Indices: 14438350--14438397 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
14438340 TATATTTATT
14438350 TAATATTTTATTATTTTC
1 TAATATTTTATTATTTTC
14438368 TAATATTTTATTATTTTC
1 TAATATTTTATTATTTTC
14438386 TAATATTTTATT
1 TAATATTTTATT
14438398 CTAATAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TAATATTTTATTATTTTC
Found at i:14441756 original size:18 final size:18
Alignment explanation
Indices: 14441650--14441774 Score: 87
Period size: 18 Copynumber: 6.7 Consensus size: 18
14441640 TTTATCTAAT
14441650 CCCTAAACCA-TTAAAAA
1 CCCTAAACCATTTAAAAA
*
14441667 -CCTAATACAATTTAAAAAA
1 CCCTAA-ACCATTT-AAAAA
14441686 CCCTAAACCACTTTAAATATA
1 CCCTAAACCA-TTTAAA-A-A
* *
14441707 -TC-AAACCATTCAAAAAAAA
1 CCCTAAACCATT---TAAAAA
*
14441726 CCCTAAAATCATTTAAAAA
1 CCCT-AAACCATTTAAAAA
*
14441745 CCCTAAACCATTAAAAAA
1 CCCTAAACCATTTAAAAA
*
14441763 CCCTAAATCATT
1 CCCTAAACCATT
14441775 CTAACATAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 25
0.71 0.08 0.21
Matches are distributed among these distances:
16 5 0.06
17 3 0.04
18 27 0.32
19 27 0.32
20 12 0.14
21 4 0.05
22 7 0.08
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (18 bp):
CCCTAAACCATTTAAAAA
Found at i:14445594 original size:40 final size:40
Alignment explanation
Indices: 14445539--14445625 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 40
14445529 AAAACGAGAA
*
14445539 TCGGGCAGCGGTGTTTTAATACGATTATGGGACTGTCGGT
1 TCGGGTAGCGGTGTTTTAATACGATTATGGGACTGTCGGT
* *
14445579 TCGGGTAGCGGTGTTTTTATACGATTATGGGACTTTCGGT
1 TCGGGTAGCGGTGTTTTAATACGATTATGGGACTGTCGGT
14445619 TCGGGTA
1 TCGGGTA
14445626 ACACGGCACT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.16, C:0.14, G:0.34, T:0.36
Consensus pattern (40 bp):
TCGGGTAGCGGTGTTTTAATACGATTATGGGACTGTCGGT
Found at i:14448401 original size:43 final size:43
Alignment explanation
Indices: 14448352--14448651 Score: 395
Period size: 43 Copynumber: 7.0 Consensus size: 43
14448342 GACATATAGT
* *
14448352 GGCGTTTGTCTTT-ACAAACGCCGCTATTGAATGTGTATTTTGC
1 GGCGTTTGTCTTTGA-AAACGCCGCTATTGACTGTGTATTTAGC
* * * *
14448395 AGCGTTTGTCTTTGAAATCGCCGCTATTGACTGTGCATTTAGT
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
* *
14448438 GGCGCTTGTCTTTGAAAATGCCGCTATTGACTGTGTATTTAGC
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
* * * * * *
14448481 GGCATTTATCTTTGGAAATGCCGCTATTGATTATGTATTTAGC
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
* *
14448524 GGTGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAAC
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
14448567 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
* * ** *
14448610 AGCGTTTATCTTTTTAAACGTCGCTATTGACTGTGTATTTAG
1 GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAG
14448652 TGGTATTTGT
Statistics
Matches: 223, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
43 222 1.00
44 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (43 bp):
GGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC
Found at i:14450596 original size:2 final size:2
Alignment explanation
Indices: 14450589--14450625 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14450579 ATAGATAAAA
14450589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14450626 CCTTCGTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14452788 original size:15 final size:15
Alignment explanation
Indices: 14452768--14452799 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14452758 GTATTATATA
14452768 AATATATAATAAAGT
1 AATATATAATAAAGT
*
14452783 AATATATAATAATGT
1 AATATATAATAAAGT
14452798 AA
1 AA
14452800 GCGAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (15 bp):
AATATATAATAAAGT
Found at i:14453433 original size:61 final size:61
Alignment explanation
Indices: 14453233--14453421 Score: 288
Period size: 61 Copynumber: 3.1 Consensus size: 61
14453223 AACTGGTACA
* * *
14453233 TGATTTACCTTTAAACTAGTAACTAAACGTGAAACACAGTAAACAAGGAGGACTTGATGCA
1 TGATTTACCCTTAAACTAGTAACTAAACGTGAAACACACTAAACAAGGAGGACTTGATGCG
* * * *
14453294 TGCTTTACCCTTAAACTAGTAACTAAACGTGAAACACACTAAACAATGAGGACTTAATGTG
1 TGATTTACCCTTAAACTAGTAACTAAACGTGAAACACACTAAACAAGGAGGACTTGATGCG
* * *
14453355 TGATTTACCCTTAAACTAGTAACTAAATGTGAAACATACTAAACAGGGAGGACTTGATGCG
1 TGATTTACCCTTAAACTAGTAACTAAACGTGAAACACACTAAACAAGGAGGACTTGATGCG
14453416 TGATTT
1 TGATTT
14453422 TCCCAAAAAC
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 114 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TGATTTACCCTTAAACTAGTAACTAAACGTGAAACACACTAAACAAGGAGGACTTGATGCG
Found at i:14453736 original size:16 final size:16
Alignment explanation
Indices: 14453715--14453777 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 16
14453705 TAATTATTTA
14453715 AAAAAATTATTTATAT
1 AAAAAATTATTTATAT
*
14453731 AAAAAATTA-TCA-AT
1 AAAAAATTATTTATAT
* *
14453745 --AATA-TATTTAAAT
1 AAAAAATTATTTATAT
14453758 -AAAAATTATTTATAT
1 AAAAAATTATTTATAT
14453773 AAAAA
1 AAAAA
14453778 TTCATCGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
11 2 0.05
12 5 0.14
13 2 0.05
14 5 0.14
15 10 0.27
16 13 0.35
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAAAATTATTTATAT
Found at i:14453736 original size:19 final size:19
Alignment explanation
Indices: 14453714--14453777 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
14453704 CTAATTATTT
14453714 AAAAAAATTATTTATATAA
1 AAAAAAATTATTTATATAA
* * *
14453733 AAAATTATCAATAATATATTTAA
1 AAAA--A--AATTATTTATATAA
*
14453756 ATAAAAATTATTTATATAA
1 AAAAAAATTATTTATATAA
14453775 AAA
1 AAA
14453778 TTCATCGATA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 17 0.52
21 2 0.06
23 14 0.42
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAAATTATTTATATAA
Found at i:14453753 original size:40 final size:42
Alignment explanation
Indices: 14453705--14453794 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
14453695 AGTGAAATTC
14453705 TAAT-TATTT-AA-AAAAATTATTTATATAAAAAATT-ATCAA
1 TAATATATTTAAATAAAAATTATTTATAT-AAAAATTCATCAA
*
14453744 TAATATATTTAAATAAAAATTATTTATATAAAAATTCATCGA
1 TAATATATTTAAATAAAAATTATTTATATAAAAATTCATCAA
14453786 TAATATATT
1 TAATATATT
14453795 ATTTTATTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
39 4 0.09
40 5 0.11
41 9 0.20
42 28 0.61
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (42 bp):
TAATATATTTAAATAAAAATTATTTATATAAAAATTCATCAA
Found at i:14453769 original size:15 final size:15
Alignment explanation
Indices: 14453706--14453779 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 15
14453696 GTGAAATTCT
14453706 AATTATTT-AA-AAA
1 AATTATTTAAATAAA
*
14453719 AATTATTTATATAAA
1 AATTATTTAAATAAA
*
14453734 AA--ATTATCAAT-AA
1 AATTATT-TAAATAAA
*
14453747 TA-TATTTAAATAAA
1 AATTATTTAAATAAA
*
14453761 AATTATTTATATAAA
1 AATTATTTAAATAAA
14453776 AATT
1 AATT
14453780 CATCGATAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
13 18 0.38
14 10 0.21
15 20 0.42
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTATTTAAATAAA
Found at i:14453883 original size:33 final size:32
Alignment explanation
Indices: 14453838--14453908 Score: 90
Period size: 36 Copynumber: 2.1 Consensus size: 32
14453828 AATTTTATTA
*
14453838 ATATTAAATTTT-ACATAATTTATTTAAAAAAT
1 ATATTAAATTTTAACATAATTTATAT-AAAAAT
14453870 ATATTAAAATTTTACAACATAATTTATATAAAAAT
1 ATATT-AAATTTT--AACATAATTTATATAAAAAT
14453905 ATAT
1 ATAT
14453909 CATGTTCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
32 5 0.15
33 7 0.21
35 10 0.29
36 12 0.35
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (32 bp):
ATATTAAATTTTAACATAATTTATATAAAAAT
Found at i:14459702 original size:29 final size:30
Alignment explanation
Indices: 14459661--14459725 Score: 123
Period size: 29 Copynumber: 2.2 Consensus size: 30
14459651 TCCTGCAAAT
14459661 AAAAATGACAAATAAATAAATAAAACGGA-
1 AAAAATGACAAATAAATAAATAAAACGGAG
14459690 AAAAATGACAAATAAATAAATAAAACGGAG
1 AAAAATGACAAATAAATAAATAAAACGGAG
14459720 AAAAAT
1 AAAAAT
14459726 ATTAAACAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 29 0.83
30 6 0.17
ACGTcount: A:0.69, C:0.06, G:0.11, T:0.14
Consensus pattern (30 bp):
AAAAATGACAAATAAATAAATAAAACGGAG
Found at i:14462700 original size:13 final size:13
Alignment explanation
Indices: 14462682--14462706 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14462672 TATCATACTT
14462682 CTCTCATTTTTTC
1 CTCTCATTTTTTC
14462695 CTCTCATTTTTT
1 CTCTCATTTTTT
14462707 AAATCTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (13 bp):
CTCTCATTTTTTC
Found at i:14463497 original size:2 final size:2
Alignment explanation
Indices: 14463490--14463581 Score: 168
Period size: 2 Copynumber: 46.5 Consensus size: 2
14463480 TTAGTGAATA
*
14463490 AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14463531 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14463573 AT AT AT AT A
1 AT AT AT AT A
14463582 ACGATAAAAA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
1 1 0.01
2 86 0.99
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14466801 original size:32 final size:31
Alignment explanation
Indices: 14466732--14466850 Score: 157
Period size: 32 Copynumber: 3.8 Consensus size: 31
14466722 GACATTGATG
* *
14466732 TGCATTATCTGAATGCGATACTGATACTCTA
1 TGCATTATCTAAATGCGACACTGATACTCTA
*
14466763 TGCATTATCTAAATGCGACATTGATACTCCTA
1 TGCATTATCTAAATGCGACACTGATACT-CTA
* *
14466795 TGCATTATCTAAATGCGACACTGATACTAATG
1 TGCATTATCTAAATGCGACACTGATACT-CTA
* *
14466827 TGCATTATCTGAATGTGACACTGA
1 TGCATTATCTAAATGCGACACTGA
14466851 CATTGTTGTG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 25 0.32
32 53 0.68
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (31 bp):
TGCATTATCTAAATGCGACACTGATACTCTA
Found at i:14466862 original size:32 final size:32
Alignment explanation
Indices: 14466698--14466850 Score: 146
Period size: 32 Copynumber: 4.8 Consensus size: 32
14466688 CTGTAAGTGT
* ** * * *
14466698 TATGCATTATTTGAATATGACTCTGACATTGA
1 TATGCATTATCTGAATGCGACACTGATACTGA
* * *
14466730 TGTGCATTATCTGAATGCGATACTGATACT-C
1 TATGCATTATCTGAATGCGACACTGATACTGA
* * **
14466761 TATGCATTATCTAAATGCGACATTGATACTCC
1 TATGCATTATCTGAATGCGACACTGATACTGA
* *
14466793 TATGCATTATCTAAATGCGACACTGATACTAA
1 TATGCATTATCTGAATGCGACACTGATACTGA
* *
14466825 TGTGCATTATCTGAATGTGACACTGA
1 TATGCATTATCTGAATGCGACACTGA
14466851 CATTGTTGTG
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
31 26 0.26
32 75 0.74
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (32 bp):
TATGCATTATCTGAATGCGACACTGATACTGA
Found at i:14468589 original size:18 final size:20
Alignment explanation
Indices: 14468546--14468582 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
14468536 GGGTTTAAGG
14468546 ATGAATGAGAAAAAATGAGA
1 ATGAATGAGAAAAAATGAGA
14468566 ATGAATGA-AAAAAATGA
1 ATGAATGAGAAAAAATGA
14468583 AGAGAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.22, T:0.16
Consensus pattern (20 bp):
ATGAATGAGAAAAAATGAGA
Found at i:14472646 original size:32 final size:32
Alignment explanation
Indices: 14472578--14472694 Score: 117
Period size: 32 Copynumber: 3.7 Consensus size: 32
14472568 GTAACTGTTA
* * * * * * *
14472578 TGCATTATCTGGATGCAATATTCACATTATTA
1 TGCATTATCTGAATGCAACACTAACACTAATG
** *
14472610 TGCATTATCTGAATGTGACACTAACACTACTG
1 TGCATTATCTGAATGCAACACTAACACTAATG
* * *
14472642 TGCATTATATGAATACAACACTTACACTAATG
1 TGCATTATCTGAATGCAACACTAACACTAATG
14472674 TGCATTATCTGAATGCAACAC
1 TGCATTATCTGAATGCAACAC
14472695 ACTGCTCGTA
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (32 bp):
TGCATTATCTGAATGCAACACTAACACTAATG
Found at i:14473045 original size:47 final size:47
Alignment explanation
Indices: 14472991--14473113 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 47
14472981 AAAGCACTGA
* * *
14472991 CAATGCCCAACGAGGGCAACTGAGGTAGCATAGCCACACGCCATTAC
1 CAATGCCCAACTAGGGAAACTGAGGTAGCATAGCCACACACCATTAC
* * * * *
14473038 CAATGCCCCACTAGGGAAACTGAGGTGGCCTAGCTATACACCATTAC
1 CAATGCCCAACTAGGGAAACTGAGGTAGCATAGCCACACACCATTAC
* *
14473085 CAATGCCCTACTAGGGAAACTAAGGTAGC
1 CAATGCCCAACTAGGGAAACTGAGGTAGC
14473114 CTCACCACAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16
Consensus pattern (47 bp):
CAATGCCCAACTAGGGAAACTGAGGTAGCATAGCCACACACCATTAC
Found at i:14473570 original size:85 final size:85
Alignment explanation
Indices: 14473478--14473649 Score: 254
Period size: 85 Copynumber: 2.0 Consensus size: 85
14473468 TAACTGTGCA
* * * * *
14473478 TCATAAATTTATGACGCGCATTTATGACTTACATTGCGCGTTATTGAAGCCCCCGTCATAAATGA
1 TCATAAATTTATGACACGCATTTATGACTTACATTGCGCGTCATTAAAGCCCCCATCATAAATAA
* *
14473543 AGATAACACACATTTGTGTG
66 AAATAACACACATTCGTGTG
* *
14473563 TCATAAATTTATGACACGCATTTATGACTTACATTGCGTGTCATTAAAGCCTCCATCATAAATAA
1 TCATAAATTTATGACACGCATTTATGACTTACATTGCGCGTCATTAAAGCCCCCATCATAAATAA
*
14473628 AAATGACACACATTCGTGTG
66 AAATAACACACATTCGTGTG
14473648 TC
1 TC
14473650 GTGATTGTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 77 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (85 bp):
TCATAAATTTATGACACGCATTTATGACTTACATTGCGCGTCATTAAAGCCCCCATCATAAATAA
AAATAACACACATTCGTGTG
Found at i:14478313 original size:20 final size:20
Alignment explanation
Indices: 14478288--14478325 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14478278 ATCTAAAATA
*
14478288 TGTAGTATCGATACTCTACT
1 TGTAGTATCAATACTCTACT
14478308 TGTAGTATCAATACTCTA
1 TGTAGTATCAATACTCTA
14478326 GGGTCAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (20 bp):
TGTAGTATCAATACTCTACT
Found at i:14485784 original size:12 final size:12
Alignment explanation
Indices: 14485767--14485791 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14485757 TTTAGTCCAC
14485767 ACAACACAAGTA
1 ACAACACAAGTA
14485779 ACAACACAAGTA
1 ACAACACAAGTA
14485791 A
1 A
14485792 TCGTCCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.08, T:0.08
Consensus pattern (12 bp):
ACAACACAAGTA
Found at i:14486451 original size:22 final size:22
Alignment explanation
Indices: 14486426--14486474 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
14486416 GATGTACCTG
14486426 CCAATGCTTTATGACCTATTCA
1 CCAATGCTTTATGACCTATTCA
14486448 CCAATGCTTTATGACCTATTCA
1 CCAATGCTTTATGACCTATTCA
14486470 CCAAT
1 CCAAT
14486475 ATTCTTTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.35
Consensus pattern (22 bp):
CCAATGCTTTATGACCTATTCA
Found at i:14490117 original size:14 final size:15
Alignment explanation
Indices: 14490098--14490127 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14490088 ATTTTGTTCC
14490098 TTTAAAAT-TTTCAA
1 TTTAAAATATTTCAA
14490112 TTTAAAATATTTCAA
1 TTTAAAATATTTCAA
14490127 T
1 T
14490128 AAATATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTAAAATATTTCAA
Found at i:14495695 original size:185 final size:187
Alignment explanation
Indices: 14495383--14495754 Score: 730
Period size: 185 Copynumber: 2.0 Consensus size: 187
14495373 TGAGTTTGAA
14495383 TCCGAAGTCTGTTTCGACAGATTCTAACACAAAAGACTCCAAATTGAACTTTTAACCTGAACATA
1 TCCGAAGTCTGTTTCGACAGATTCTAACACAAAAGACTCCAAATTGAACTTTTAACCTGAACATA
14495448 CATATGTATTAAAAGTAATTTGGTTAAATATTCTTAAGGTTGGACTGGGAACTGATTTATTTTGT
66 CATATGTATTAAAAGTAATTTGGTTAAATATTCTTAAGGTTGGACTGGGAACTGATTTATTTTGT
14495513 TAATT-TGTAAGGTACTCTTGATTCTCCTGCTTGTACGTC-GGTCGACCTATATCCT
131 TAATTATGTAAGGTACTCTTGATTCTCCTGCTTGTACGTCTGGTCGACCTATATCCT
14495568 TCCGAAGTCTGTTTCGACAGATTCTAACACAAAAGACTCCAAATTGAACTTTTAACCTGAACATA
1 TCCGAAGTCTGTTTCGACAGATTCTAACACAAAAGACTCCAAATTGAACTTTTAACCTGAACATA
14495633 CATATGTATTAAAAGTAATTTGGTTAAATATTCTTAAGGTTGGACTGGGAACTGATTTATTTTGT
66 CATATGTATTAAAAGTAATTTGGTTAAATATTCTTAAGGTTGGACTGGGAACTGATTTATTTTGT
14495698 TAATTATGTAAGGTACTCTTGATTCTCCTGCTTGTACGTCTGGTCGACCTATATCCT
131 TAATTATGTAAGGTACTCTTGATTCTCCTGCTTGTACGTCTGGTCGACCTATATCCT
14495755 CTCTATCCGA
Statistics
Matches: 185, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
185 135 0.73
186 34 0.18
187 16 0.09
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (187 bp):
TCCGAAGTCTGTTTCGACAGATTCTAACACAAAAGACTCCAAATTGAACTTTTAACCTGAACATA
CATATGTATTAAAAGTAATTTGGTTAAATATTCTTAAGGTTGGACTGGGAACTGATTTATTTTGT
TAATTATGTAAGGTACTCTTGATTCTCCTGCTTGTACGTCTGGTCGACCTATATCCT
Found at i:14498461 original size:103 final size:105
Alignment explanation
Indices: 14498343--14498547 Score: 396
Period size: 103 Copynumber: 2.0 Consensus size: 105
14498333 TCCATATTGT
14498343 TTCTAAATGTAAATGATATCTCTTTAACAATTGATATCAAATTTTTAAATACTTCGGTTTTACAA
1 TTCTAAATGTAAATGATATCTCTTTAACAATTGATATCAAATTTTTAAATACTTCGGTTTTACAA
14498408 ATTTTTGACCTT-AA-CTTTTAATATTTATAGAATTCTTG
66 ATTTTTGACCTTAAACCTTTTAATATTTATAGAATTCTTG
14498446 TTCTAAATGTAAATGATATCTCTTTAACAATTGATATCAAATTTTTAAATACTTCGGTTTTACAA
1 TTCTAAATGTAAATGATATCTCTTTAACAATTGATATCAAATTTTTAAATACTTCGGTTTTACAA
14498511 ATTTTTGACCTTAAACCTTTTAATATTTATAGAATTC
66 ATTTTTGACCTTAAACCTTTTAATATTTATAGAATTC
14498548 AAATTTTTAA
Statistics
Matches: 100, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
103 77 0.77
104 2 0.02
105 21 0.21
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (105 bp):
TTCTAAATGTAAATGATATCTCTTTAACAATTGATATCAAATTTTTAAATACTTCGGTTTTACAA
ATTTTTGACCTTAAACCTTTTAATATTTATAGAATTCTTG
Found at i:14505143 original size:20 final size:20
Alignment explanation
Indices: 14505114--14505155 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
14505104 ATTTCACCAC
*
14505114 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
14505134 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
14505154 AT
1 AT
14505156 AGGCTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:14508678 original size:14 final size:14
Alignment explanation
Indices: 14508654--14508690 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
14508644 TACAGAGTCC
14508654 AAAAGGCATTCTTCG
1 AAAA-GCATTCTTCG
14508669 AAAAGCATTCTTCG
1 AAAAGCATTCTTCG
14508683 AAAAGCAT
1 AAAAGCAT
14508691 ACGTGCCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (14 bp):
AAAAGCATTCTTCG
Found at i:14509075 original size:53 final size:53
Alignment explanation
Indices: 14508995--14509100 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
14508985 ACTATCAGAA
14508995 ATAGGGTATATTACGCCAGCGTCAAGCCATTTGAGAATCTCCTTCATCACAAC
1 ATAGGGTATATTACGCCAGCGTCAAGCCATTTGAGAATCTCCTTCATCACAAC
14509048 ATAGGGTATATTACGCCAGCGTCAAGCCATTTGAGAATCTCCTTCATCACAAC
1 ATAGGGTATATTACGCCAGCGTCAAGCCATTTGAGAATCTCCTTCATCACAAC
14509101 TTGCTTCATG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (53 bp):
ATAGGGTATATTACGCCAGCGTCAAGCCATTTGAGAATCTCCTTCATCACAAC
Found at i:14514130 original size:26 final size:26
Alignment explanation
Indices: 14514094--14514153 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
14514084 TGTTTTGGAT
14514094 GTTTGAATGTTTGAATTTGATTTTTG
1 GTTTGAATGTTTGAATTTGATTTTTG
*
14514120 GTTTGAATGTTTGAATTTTATTTTTG
1 GTTTGAATGTTTGAATTTGATTTTTG
14514146 GTTTGAAT
1 GTTTGAAT
14514154 ATTGAATGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.58
Consensus pattern (26 bp):
GTTTGAATGTTTGAATTTGATTTTTG
Found at i:14514452 original size:13 final size:13
Alignment explanation
Indices: 14514430--14514463 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
14514420 AGGGGGAGTA
14514430 ATTTTCAAAAATG
1 ATTTTCAAAAATG
14514443 A-TTTCAAAAATG
1 ATTTTCAAAAATG
14514455 ATTTTCAAA
1 ATTTTCAAA
14514464 GAAAATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (13 bp):
ATTTTCAAAAATG
Found at i:14514986 original size:20 final size:20
Alignment explanation
Indices: 14514953--14515008 Score: 94
Period size: 20 Copynumber: 2.7 Consensus size: 20
14514943 TTTTATACTA
14514953 AGTGTACAGATACACCTTGAG
1 AGTGTAC-GATACACCTTGAG
14514974 AGTGTACGATACACCTTGAG
1 AGTGTACGATACACCTTGAG
14514994 AGTGTACCGATACAC
1 AGTGTA-CGATACAC
14515009 ACACGCTCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 19 0.56
21 15 0.44
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (20 bp):
AGTGTACGATACACCTTGAG
Found at i:14521383 original size:17 final size:17
Alignment explanation
Indices: 14521361--14521400 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14521351 GTTTAGGATG
14521361 AATATGAAACATAAATA
1 AATATGAAACATAAATA
*
14521378 AATATGAAACATAAGTA
1 AATATGAAACATAAATA
14521395 AATATG
1 AATATG
14521401 CATGGCCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.25
Consensus pattern (17 bp):
AATATGAAACATAAATA
Found at i:14527143 original size:29 final size:29
Alignment explanation
Indices: 14527111--14527196 Score: 72
Period size: 29 Copynumber: 3.0 Consensus size: 29
14527101 AAATATACTA
14527111 ATTACTTATTATTGTCACAAAACTATAA-T
1 ATTA-TTATTATTGTCACAAAACTATAACT
** * *
14527140 ATTAATTAAAATTAT-ATAAAATCTACTAACT
1 ATT-ATTATTATTGTCACAAAA-CTA-TAACT
14527171 ATTA--ATTATTGTCACAAAACTATAAC
1 ATTATTATTATTGTCACAAAACTATAAC
14527197 ACTAATTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
27 4 0.09
28 13 0.30
29 18 0.41
30 5 0.11
31 4 0.09
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (29 bp):
ATTATTATTATTGTCACAAAACTATAACT
Found at i:14527144 original size:57 final size:57
Alignment explanation
Indices: 14527073--14527344 Score: 422
Period size: 57 Copynumber: 4.8 Consensus size: 57
14527063 TATCATACTT
** *
14527073 AAAA-TATAACATTAATTCGAATTATATAAAATATACTAATTACTT-ATTATTGTCAC
1 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTA-TTAATTATTGTCAC
* *
14527129 AAAACTATAATATTAATTAAAATTATATAAAATCTACTAACTATTAATTATTGTCAC
1 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATTAATTATTGTCAC
* * *
14527186 AAAACTATAACACTAATTAAAATTATATAAAATCTACTAATTAGTAATTATTGCCAC
1 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATTAATTATTGTCAC
* * *
14527243 AAAACTATAACGTTAAATAGAATTATATAAAATCTACTAATTATTAATTATTGTCAC
1 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATTAATTATTGTCAC
14527300 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATT
1 AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATT
14527345 TTTGTTAAAC
Statistics
Matches: 195, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
56 6 0.03
57 189 0.97
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (57 bp):
AAAACTATAACATTAATTAAAATTATATAAAATCTACTAATTATTAATTATTGTCAC
Found at i:14531778 original size:8 final size:9
Alignment explanation
Indices: 14531753--14531777 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14531743 CATTATATAT
14531753 ATTTTTTTA
1 ATTTTTTTA
14531762 ATTTTTTTA
1 ATTTTTTTA
14531771 ATTTTTT
1 ATTTTTT
14531778 ATAAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:14532180 original size:7 final size:7
Alignment explanation
Indices: 14532165--14532230 Score: 116
Period size: 7 Copynumber: 9.6 Consensus size: 7
14532155 GTGGGATCGG
14532165 GAAGGG-
1 GAAGGGA
*
14532171 GAAGGGG
1 GAAGGGA
14532178 GAAGGGA
1 GAAGGGA
14532185 GAAGGGA
1 GAAGGGA
14532192 GAAGGGA
1 GAAGGGA
14532199 GAAGGGA
1 GAAGGGA
14532206 GAAGGGA
1 GAAGGGA
14532213 GAAGGGA
1 GAAGGGA
14532220 GAAGGGA
1 GAAGGGA
14532227 GAAG
1 GAAG
14532231 AGGGATGAGG
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
6 6 0.10
7 52 0.90
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (7 bp):
GAAGGGA
Found at i:14535700 original size:15 final size:15
Alignment explanation
Indices: 14535677--14535713 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
14535667 CCGCTCGTCT
*
14535677 GAAGAACCCCAGTGG
1 GAAGCACCCCAGTGG
14535692 GAAGCACCCCAGTGG
1 GAAGCACCCCAGTGG
14535707 GAAGCAC
1 GAAGCAC
14535714 ATAACTTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.30, G:0.32, T:0.05
Consensus pattern (15 bp):
GAAGCACCCCAGTGG
Found at i:14536529 original size:32 final size:32
Alignment explanation
Indices: 14536474--14536543 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
14536464 TGTTTTGGTT
* *
14536474 AGATGAAAGGAGTATGTAGTGTAATAGATTGA
1 AGATGAAAAGAGTATGTAGTGTAAGAGATTGA
*
14536506 AGATGAAAAGAGTGTGTTA-TGTAAGAGATTGA
1 AGATGAAAAGAGTATG-TAGTGTAAGAGATTGA
14536538 AGATGA
1 AGATGA
14536544 TGTGCACAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 32 0.94
33 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.27
Consensus pattern (32 bp):
AGATGAAAAGAGTATGTAGTGTAAGAGATTGA
Found at i:14543749 original size:29 final size:29
Alignment explanation
Indices: 14543715--14543773 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
14543705 CCTAAATTAA
14543715 TTTGATAACATTGCTTACATCAATTTAGT
1 TTTGATAACATTGCTTACATCAATTTAGT
**
14543744 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATAACATTGCTTACATCAATTTAGT
14543773 T
1 T
14543774 AGGTGAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (29 bp):
TTTGATAACATTGCTTACATCAATTTAGT
Found at i:14545326 original size:41 final size:41
Alignment explanation
Indices: 14545175--14545480 Score: 167
Period size: 41 Copynumber: 7.4 Consensus size: 41
14545165 CAAAATGGTA
* * *
14545175 ACTTTAGCGACGTTTTTATACAAACGCCGCAACAGAGTATT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAGAGTAGT
* * * *
14545216 ACTTTAGCTGCGTCTTTT-TACAAACGCTGCTATAGACT--T
1 ACTTTAGCGGCGT-TTTTATACAAACGCCGCAATAGAGTAGT
** * * *
14545255 CATCTACAGTGGCATTTTT-TCAATAAACGCCGCAATAGAGTAGT
1 -A-CTTTAGCGGCGTTTTTAT--ACAAACGCCGCAATAGAGTAGT
* * * * **
14545299 ACTTTAGCGGCGTTTTTATATAAACGCCGCTATAAACTCTT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAGAGTAGT
* ** * * * *
14545340 ACTTTAGTGGTATTTTTATACAAATGCCGCAACATATTAGT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAGAGTAGT
* * * **
14545381 ACTTTAACAGTGTTTTT-TCAACAAACAACGCAATAGAGTAGT
1 ACTTTAGCGGCGTTTTTAT--ACAAACGCCGCAATAGAGTAGT
* * * *
14545423 ACTTT-GACGGTGTTTTTATACAAACGCCGTTAA-AGATTCGT
1 ACTTTAG-CGGCGTTTTTATACAAACGCCG-CAATAGAGTAGT
*
14545464 ACTTTAGTGGCGTTTTT
1 ACTTTAGCGGCGTTTTT
14545481 GTTTACAAAC
Statistics
Matches: 197, Mismatches: 54, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
39 1 0.01
40 7 0.04
41 121 0.61
42 64 0.32
43 3 0.02
44 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (41 bp):
ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAGAGTAGT
Found at i:14545741 original size:12 final size:12
Alignment explanation
Indices: 14545724--14545749 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14545714 AGACTTGGAG
14545724 GAGCTGGAATCC
1 GAGCTGGAATCC
14545736 GAGCTGGAATCC
1 GAGCTGGAATCC
14545748 GA
1 GA
14545750 TGTGAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.15
Consensus pattern (12 bp):
GAGCTGGAATCC
Found at i:14550078 original size:20 final size:20
Alignment explanation
Indices: 14550040--14550078 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14550030 ACTCAAAATC
* *
14550040 ATTTTTCAAAATTTCATTTA
1 ATTTTTCAAAATCTAATTTA
14550060 ATTTTTCAAAATCTAATTT
1 ATTTTTCAAAATCTAATTT
14550079 TGCTTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTCAAAATCTAATTTA
Found at i:14553057 original size:31 final size:31
Alignment explanation
Indices: 14553019--14553185 Score: 112
Period size: 31 Copynumber: 5.5 Consensus size: 31
14553009 AAATATTGAA
*
14553019 AGTTTAGGTACTAAAATTGATC-AAAACTAAT
1 AGTTTAGGTACTAAAATGGA-CAAAAACTAAT
*
14553050 AGTTTAGGTATTAAAATGGACAAAAACTAAT
1 AGTTTAGGTACTAAAATGGACAAAAACTAAT
* * **
14553081 TGTTTAAGTACTAAAATAAAACAAAAACTAA-
1 AGTTTAGGTACTAAAAT-GGACAAAAACTAAT
* * *** * *
14553112 AGTTTAAGCA-TATTTTTGA-AAAAAATGAA-
1 AGTTTAGGTACTAAAATGGACAAAAACT-AAT
* *
14553141 AGTTTAGGTACTAAAATGGAC-CAAACTGAT
1 AGTTTAGGTACTAAAATGGACAAAAACTAAT
* *
14553171 AATTTAGGTATTAAA
1 AGTTTAGGTACTAAA
14553186 CGTTTAATTT
Statistics
Matches: 104, Mismatches: 26, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
28 6 0.06
29 12 0.12
30 26 0.25
31 49 0.47
32 11 0.11
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.31
Consensus pattern (31 bp):
AGTTTAGGTACTAAAATGGACAAAAACTAAT
Found at i:14557477 original size:23 final size:23
Alignment explanation
Indices: 14557451--14557499 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
14557441 ATAAAGAACC
*
14557451 AAAATAAACT-TAAATATACCATT
1 AAAATAAACTCTAAACAT-CCATT
*
14557474 AAAATAAAGTCTAAACATCCATT
1 AAAATAAACTCTAAACATCCATT
14557497 AAA
1 AAA
14557500 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTCTAAACATCCATT
Found at i:14566749 original size:17 final size:19
Alignment explanation
Indices: 14566700--14566744 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14566690 AATGTAGGGT
**
14566700 TAATTTTGTATAACATTTA
1 TAATTTTGTATATGATTTA
14566719 TAATTTTGTATATGATTTA
1 TAATTTTGTATATGATTTA
14566738 TAATTTT
1 TAATTTT
14566745 ATATGTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (19 bp):
TAATTTTGTATATGATTTA
Found at i:14567555 original size:201 final size:200
Alignment explanation
Indices: 14567194--14568159 Score: 1441
Period size: 201 Copynumber: 4.8 Consensus size: 200
14567184 GTAAACATAT
* * * *
14567194 GTGTCGCTACAGTTACAAAAAGTATCGATCCCAAAAACATCGAAACGCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * *
14567259 GGTAATTTGTCAATGTAACCGGTATAAATATATTGGTTTTATGAGAGAATAGTTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATA-CGATTTTATGAGAGAATAGGTCTACATAATGT
* * ** * * *
14567324 TTCGACACTTGTGGAATTTGTGTTGATACTTTTTGTCCAGAATGAATGCCCAAAATGGGTGCACG
130 ATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACG
*
14567389 GATAAA
195 CATAAA
*
14567395 GTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
*
14567460 TGTAATTTTTCAATGTAACCGGTATAAATATATCGATTTTATGAGAGAATAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATA-CGATTTTATGAGAGAATAGGTCTACATAATGT
** * *
14567525 ATCGACACTTTTGGAATTTGTGTCGATACTTTTTGTCCTGAATGAATGCCCAAACTAAGTGCACG
130 ATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACG
14567590 CATAAA
195 CATAAA
* * * *
14567596 GTGTCGATATATTTACAAAAGGTATCGATCCCAAAAATATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
14567661 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATCATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATA-CGATTTTATGAGAGAATAGGTCTACATAATGT
* *
14567726 ATCGACACTTTTTAAATTTGTGTCGATGCTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACA
130 ATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACG
14567791 CATAAA
195 CATAAA
* *
14567797 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTCTAATATAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * * *
14567862 TGT-ATTTTCCAATGTAACTGATATAAATATACCAGTTGTAAT-AGAGAATAGGTCTATATAATG
66 GGTAATTTTTCAATGTAACCGGTATAAATATACGA-TT-TTATGAGAGAATAGGTCTACATAATG
14567925 TATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCAC
129 TATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCAC
14567990 GCATAAA
194 GCATAAA
* * *
14567997 GTGTCGATACATTTATAAAAATTATCTATCCCAAAAACATCGAAACCCATAATTATAATCTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* *
14568062 GGTAATTTTTCAATGTAACCGGTATAAATATACCATGTTTAAGAGAGAATAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACGAT-TTTATGAGAGAATAGGTCTACATAATGT
* *
14568127 ATTGACACTTTTTAAATTTGTGTTGATACTTTT
130 ATCGACACTTTTTAAATTTGTGTCGATACTTTT
14568160 AAAATTTTCG
Statistics
Matches: 695, Mismatches: 65, Indels: 10
0.90 0.08 0.01
Matches are distributed among these distances:
199 1 0.00
200 182 0.26
201 512 0.74
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (200 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACGATTTTATGAGAGAATAGGTCTACATAATGTA
TCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACGC
ATAAA
Found at i:14568074 original size:401 final size:402
Alignment explanation
Indices: 14567194--14568159 Score: 1508
Period size: 401 Copynumber: 2.4 Consensus size: 402
14567184 GTAAACATAT
* * *
14567194 GTGTCGCTACAGTTACAAAAAGTATCGATCCCAAAAACATCGAAACGCATAATTATAATGTAATA
1 GTGTCGATACATTTACAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* ** * *
14567259 GGTAATTTGTCAATGTAACCGGTATAAATATATTGGTTTTATGAGAGAATAGTTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* * ** * *
14567324 TTCGACACTTGTGGAATTTGTGTTGATACTTTTTGTCCAGAATGAATGCCCAAAATGGGTGCACG
131 ATCGACACTTTTTAAATTTGTGTTGATACTTTTTGTCCAGAATGAATGCCCAAAATAGGTGCACA
*
14567389 GATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTATAAT
196 CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTATAAT
* * * * *
14567454 GTAATATGTAATTTTTCAATGTAACCGGTATAAATATATCGATTTTATGAGAGAATAGGTCTACA
261 ATAATATGTAATTTTCCAATGTAACCGATATAAATATACCGATTTAATGAGAGAATAGGTCTACA
* *
14567519 TAATGTATCGACACTTTTGGAATTTGTGTCGATACTTTTTGTCCTGAATGAATGCCCAAACTAAG
326 TAATGTATCGACACTTTTGAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAAG
14567584 TGCACGCATAAA
391 TGCACGCATAAA
* * *
14567596 GTGTCGATATATTTACAAAAGGTATCGATCCCAAAAATATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTACAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
*
14567661 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATCATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* * *
14567726 ATCGACACTTTTTAAATTTGTGTCGATGCTTTTTGTCCAGAATGAATGCCCAAACTAGGTGCACA
131 ATCGACACTTTTTAAATTTGTGTTGATACTTTTTGTCCAGAATGAATGCCCAAAATAGGTGCACA
* *
14567791 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTCTAAT
196 CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTATAAT
*
14567856 ATAATATGT-ATTTTCCAATGTAACTGATATAAATATACC-AGTTGTAAT-AGAGAATAGGTCTA
261 ATAATATGTAATTTTCCAATGTAACCGATATAAATATACCGA-TT-TAATGAGAGAATAGGTCTA
* *
14567918 TATAATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTA
324 CATAATGTATCGACACTTTTGAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTA
*
14567983 GGTGCACGCATAAA
389 AGTGCACGCATAAA
* * * *
14567997 GTGTCGATACATTTATAAAAATTATCTATCCCAAAAACATCGAAACCCATAATTATAATCTAATA
1 GTGTCGATACATTTACAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
*
14568062 GGTAATTTTTCAATGTAACCGGTATAAATATACC-ATGTTTAAGAGAGAATAGGTCTACATAATG
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGT-TTTAAGAGAGAATAGGTCTACATAATG
*
14568126 TATTGACACTTTTTAAATTTGTGTTGATACTTTT
130 TATCGACACTTTTTAAATTTGTGTTGATACTTTT
14568160 AAAATTTTCG
Statistics
Matches: 514, Mismatches: 47, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
400 2 0.00
401 265 0.52
402 247 0.48
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (402 bp):
GTGTCGATACATTTACAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
ATCGACACTTTTTAAATTTGTGTTGATACTTTTTGTCCAGAATGAATGCCCAAAATAGGTGCACA
CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAAAAACATCGAAACCCATAATTATAAT
ATAATATGTAATTTTCCAATGTAACCGATATAAATATACCGATTTAATGAGAGAATAGGTCTACA
TAATGTATCGACACTTTTGAAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAACTAAG
TGCACGCATAAA
Found at i:14568397 original size:22 final size:22
Alignment explanation
Indices: 14568369--14568414 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
14568359 ATATTTAACT
14568369 TTTTTTCCTTAATGTGTTTGTG
1 TTTTTTCCTTAATGTGTTTGTG
*
14568391 TTTTTTCGTTAATGTGTTTGTG
1 TTTTTTCCTTAATGTGTTTGTG
14568413 TT
1 TT
14568415 CCAATATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.07, G:0.20, T:0.65
Consensus pattern (22 bp):
TTTTTTCCTTAATGTGTTTGTG
Found at i:14568502 original size:15 final size:15
Alignment explanation
Indices: 14568482--14568554 Score: 119
Period size: 15 Copynumber: 4.9 Consensus size: 15
14568472 GTATTTGCCA
*
14568482 AAGCTCTTCTTAACC
1 AAGCTCTTCTCAACC
*
14568497 AAGCTCTTCTCAACT
1 AAGCTCTTCTCAACC
14568512 AAGCTCTTCTCAACC
1 AAGCTCTTCTCAACC
14568527 AAGCTCTTCTCAACC
1 AAGCTCTTCTCAACC
*
14568542 AATCTCTTCTCAA
1 AAGCTCTTCTCAA
14568555 TGACAACGTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 54 1.00
ACGTcount: A:0.27, C:0.36, G:0.05, T:0.32
Consensus pattern (15 bp):
AAGCTCTTCTCAACC
Done.