Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 64 of 73
Found at i:14729941 original size:14 final size:14
Alignment explanation
Indices: 14729907--14729945 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14729897 TTGATTGTTT
14729907 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
14729921 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
14729935 TGTTGATTTGT
1 AATTGATTTGT
14729946 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:14730091 original size:14 final size:14
Alignment explanation
Indices: 14730072--14730125 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
14730062 GAAACTGACT
*
14730072 ATCGCAACGAGAGA
1 ATCGCAACGAGAAA
14730086 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
14730105 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
14730119 ATCGCAA
1 ATCGCAA
14730126 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:14730109 original size:19 final size:17
Alignment explanation
Indices: 14730085--14730130 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 17
14730075 GCAACGAGAG
14730085 AATCGCAATGCGAAATGAA
1 AATCGCAATGCG-AA-GAA
14730104 AATCGCAA--CG-AGAA
1 AATCGCAATGCGAAGAA
14730118 AATCGCAATGCGA
1 AATCGCAATGCGA
14730131 TTTTCATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 11 0.46
15 1 0.04
16 2 0.08
17 2 0.08
19 8 0.33
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.13
Consensus pattern (17 bp):
AATCGCAATGCGAAGAA
Found at i:14730174 original size:20 final size:20
Alignment explanation
Indices: 14730149--14730204 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
14730139 TCGCATCGCG
*
14730149 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
*
14730169 ATTTTCGCGTTGCAATAGCC
1 ATTTTCGCGTTGCGATAGCC
14730189 ATTTTCGCGTTGCGAT
1 ATTTTCGCGTTGCGAT
14730205 TTCCCCATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.39
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:14730445 original size:12 final size:12
Alignment explanation
Indices: 14730428--14730452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14730418 TCTTCGGGGA
14730428 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14730440 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14730452 C
1 C
14730453 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:14730707 original size:20 final size:20
Alignment explanation
Indices: 14730683--14730771 Score: 124
Period size: 20 Copynumber: 4.5 Consensus size: 20
14730673 TGTATTATAT
*
14730683 CGTTGCGATAGTCAGAATCT
1 CGTTGCGATAGTCAGAATCG
*
14730703 CGTTGCGAAAGTCAGAATCG
1 CGTTGCGATAGTCAGAATCG
* *
14730723 CGTTGCGAAAGTCAGTATCG
1 CGTTGCGATAGTCAGAATCG
*
14730743 CGTTGCGATAGTCAGTATCG
1 CGTTGCGATAGTCAGAATCG
*
14730763 CATTGCGAT
1 CGTTGCGAT
14730772 TTACTTATTC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (20 bp):
CGTTGCGATAGTCAGAATCG
Found at i:14735625 original size:13 final size:13
Alignment explanation
Indices: 14735594--14735628 Score: 56
Period size: 11 Copynumber: 2.8 Consensus size: 13
14735584 TTATTCTAAA
14735594 ATAAAATAAAAAT
1 ATAAAATAAAAAT
14735607 AT--AATAAAAAT
1 ATAAAATAAAAAT
14735618 ATAAAATAAAA
1 ATAAAATAAAA
14735629 TATTTATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 11 0.55
13 9 0.45
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAAATAAAAAT
Found at i:14735625 original size:18 final size:17
Alignment explanation
Indices: 14735590--14735630 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14735580 ATATTTATTC
14735590 TAAAAT-AAAATAAAAA
1 TAAAATAAAAATAAAAA
*
14735606 TATAATAAAAATATAAAA
1 TAAAATAAAAATA-AAAA
14735624 TAAAATA
1 TAAAATA
14735631 TTTATACCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 5 0.24
17 6 0.29
18 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAATAAAAATAAAAA
Found at i:14738101 original size:30 final size:30
Alignment explanation
Indices: 14738066--14738122 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
14738056 TAAAACTGGC
14738066 ATAATTATACATTTGGTCCTTAATATTAGA
1 ATAATTATACATTTGGTCCTTAATATTAGA
*
14738096 ATAATTATACATTTGGTCTTTAATATT
1 ATAATTATACATTTGGTCCTTAATATT
14738123 TACATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (30 bp):
ATAATTATACATTTGGTCCTTAATATTAGA
Found at i:14738589 original size:93 final size:90
Alignment explanation
Indices: 14738466--14738688 Score: 329
Period size: 90 Copynumber: 2.4 Consensus size: 90
14738456 TAATTAAACA
14738466 TTAATCGAACCGAAATTTATTTAAAAATTATTAATCGAATCAAATCAACCGATTTTTTTCTTTAA
1 TTAATCGAACCGAAATTTATTTAAAAATTATTAATCGAATCAAATCAACCGA--TTTTT-TTTAA
*
14738531 CATTAATCGAACCGAAATTATTTTACAG
63 CATTAATCGAACCGAAATTATTTGACAG
* * * * *
14738559 TTAATCGAATCGAAATTTATTTAAAAATTATTAACCGAACCAAATTAACTGATTTTTTTTAACAT
1 TTAATCGAACCGAAATTTATTTAAAAATTATTAATCGAATCAAATCAACCGATTTTTTTTAACAT
* *
14738624 TAATCGAACTGAAATTATTTGACCG
66 TAATCGAACCGAAATTATTTGACAG
**
14738649 TTAATCGAACCGAAATTTATTTAAAAAACATTAATCGAAT
1 TTAATCGAACCGAAATTTATTTAAAAATTATTAATCGAAT
14738689 TTTTTCTTTA
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
90 65 0.56
91 5 0.04
93 47 0.40
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (90 bp):
TTAATCGAACCGAAATTTATTTAAAAATTATTAATCGAATCAAATCAACCGATTTTTTTTAACAT
TAATCGAACCGAAATTATTTGACAG
Found at i:14738654 original size:26 final size:26
Alignment explanation
Indices: 14738621--14738752 Score: 97
Period size: 26 Copynumber: 5.0 Consensus size: 26
14738611 TTTTTTTTAA
*
14738621 CATTAATCGAACTGAAATTATTTGAC
1 CATTAATCGAACCGAAATTATTTGAC
* * *
14738647 CGTTAATCGAACCGAAATTTATTTAAAAAA
1 CATTAATCGAACCGAAA-TTATTT---GAC
**** * *
14738677 CATTAATCGAA--TTTTTTCTTTAAC
1 CATTAATCGAACCGAAATTATTTGAC
*
14738701 CATTAATCGAACCAAAATTATTTGAC
1 CATTAATCGAACCGAAATTATTTGAC
*
14738727 CGTTAATCGAACCGAAATGTATTTGA
1 CATTAATCGAACCGAAAT-TATTTGA
14738753 AAATTATTAA
Statistics
Matches: 80, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
24 13 0.16
26 38 0.47
27 18 0.22
30 11 0.14
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (26 bp):
CATTAATCGAACCGAAATTATTTGAC
Found at i:14738762 original size:80 final size:78
Alignment explanation
Indices: 14738611--14738767 Score: 233
Period size: 80 Copynumber: 2.0 Consensus size: 78
14738601 AATTAACTGA
** *
14738611 TTTTTTTTAACATTAATCGAACTGAAATTATTTGACCGTTAATCGAACCGAAATTTATTTAAAAA
1 TTTTTTTTAACATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATGTATTTAAAAA
*
14738676 ACATTAATCGAAT
66 ACATTAACCGAAT
*
14738689 TTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATGTATTTGAA
1 TTTTT-TTTAA-CATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATGTATTTAAA
**
14738754 AATTATTAACCGAA
64 AAACATTAACCGAA
14738768 CCAAAACAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
78 5 0.07
79 5 0.07
80 60 0.86
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (78 bp):
TTTTTTTTAACATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATGTATTTAAAAA
ACATTAACCGAAT
Found at i:14738793 original size:95 final size:93
Alignment explanation
Indices: 14738688--14739005 Score: 416
Period size: 92 Copynumber: 3.4 Consensus size: 93
14738678 ATTAATCGAA
*
14738688 TTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATGTATTTGA
1 TTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGA
14738753 AAATTATTAACCGAACCAAAACAATTGATT
66 AAATTATTAACCGAA-CAAAACAA-TGATT
* * *
14738783 TTTTTTCTTTAACC---AATTGAACCGAAATTATTTGACCGTTAATCGAACCAAAATTTATTTGA
1 TTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGA
*
14738845 AAATTATTAAACGAACAAAATCAAATGATT
66 AAATTATTAACCGAACAAAA-C-AATGATT
* *
14738875 TTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGTTAATCGAATCGAAATTTATTTGA
1 TTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGA
* *
14738940 AAATTATT-ACTCGAATAAAATAA--ATT
66 AAATTATTAAC-CGAACAAAACAATGATT
* *
14738966 ATTTTTTCCTTAACCGTTAATCGATA-CAAAATTTATTTGA
1 -TTTTTTCTTTAACCATTAATCGA-ACCAAAA-TTATTTGA
14739006 AAATTATTAA
Statistics
Matches: 200, Mismatches: 14, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
91 8 0.04
92 103 0.51
93 13 0.06
94 1 0.00
95 75 0.38
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.38
Consensus pattern (93 bp):
TTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGTTAATCGAACCGAAATTTATTTGA
AAATTATTAACCGAACAAAACAATGATT
Found at i:14739449 original size:30 final size:30
Alignment explanation
Indices: 14739413--14739469 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
14739403 ATAATATATA
*
14739413 AATATTAAGGACTAAATGTATAATTATTCC
1 AATATTAAGGACCAAATGTATAATTATTCC
14739443 AATATTAAGGACCAAATGTATAATTAT
1 AATATTAAGGACCAAATGTATAATTAT
14739470 GCCAGTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.35
Consensus pattern (30 bp):
AATATTAAGGACCAAATGTATAATTATTCC
Found at i:14739970 original size:9 final size:9
Alignment explanation
Indices: 14739955--14740010 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
14739945 ATTAAAATAG
14739955 TATTAATTT
1 TATTAATTT
*
14739964 AATTAATTTT
1 TATTAA-TTT
14739974 TATTAATTT
1 TATTAATTT
*
14739983 TATTAATTA
1 TATTAATTT
* *
14739992 AATTTATTT
1 TATTAATTT
14740001 TATTAATTT
1 TATTAATTT
14740010 T
1 T
14740011 TATGTTTGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
9 30 0.79
10 8 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTAATTT
Found at i:14740013 original size:28 final size:28
Alignment explanation
Indices: 14739955--14740010 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
14739945 ATTAAAATAG
*
14739955 TATTAATTTAATTAATTTTTATTAATTT
1 TATTAATTAAATTAATTTTTATTAATTT
*
14739983 TATTAATTAAATTTA-TTTTATTAATTT
1 TATTAATTAAATTAATTTTTATTAATTT
14740010 T
1 T
14740011 TATGTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
TATTAATTAAATTAATTTTTATTAATTT
Found at i:14740066 original size:110 final size:114
Alignment explanation
Indices: 14739881--14740187 Score: 415
Period size: 114 Copynumber: 2.7 Consensus size: 114
14739871 TAATCATCAT
* * * * * *
14739881 AATTTTTTTTATCAATATTTATGTATAATGTAGCATATATTATTATTGTTTTTATTAATATATGA
1 AATTTATTTTATTAATATTTATGTATGATGTGGTATATATTATTATT-ATTTTATTAATATATGA
*
14739946 TTAAAATAGTATTAATTTAA-TTAATT-TTTA-TTA-ATTTTATTAATTA
65 TTAAAATAGTATTAATTAAATTTAATTATTTATTTATATTTTATTAATTA
* * *
14739992 AATTTATTTTATTAATTTTTATGTTTGATGTGGTATATATTATTATTATTTTATTAATATACGAT
1 AATTTATTTTATTAATATTTATGTATGATGTGGTATATATTATTATTATTTTATTAATATATGAT
* *
14740057 TAAAATAGTATTAATTAAATTTATTTATTTATTTATTTTTTATTAATTA
66 TAAAATAGTATTAATTAAATTTAATTATTTATTTATATTTTATTAATTA
* * * *
14740106 AATGTATTTTATTTATATTTATGTATGATGTGGTATATATTATTATTATTTTATTGATATATAAT
1 AATTTATTTTATTAATATTTATGTATGATGTGGTATATATTATTATTATTTTATTAATATATGAT
* *
14740171 TAAAATATTATTTATTA
66 TAAAATAGTATTAATTA
14740188 CCCTACCTTT
Statistics
Matches: 171, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
110 34 0.20
111 45 0.26
112 4 0.02
113 3 0.02
114 85 0.50
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.57
Consensus pattern (114 bp):
AATTTATTTTATTAATATTTATGTATGATGTGGTATATATTATTATTATTTTATTAATATATGAT
TAAAATAGTATTAATTAAATTTAATTATTTATTTATATTTTATTAATTA
Found at i:14740117 original size:18 final size:17
Alignment explanation
Indices: 14740065--14740118 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 17
14740055 ATTAAAATAG
14740065 TATTAATTAAATT-TATT
1 TATTAATTAAATTAT-TT
* *
14740082 TATTTATT-TATT-TTT
1 TATTAATTAAATTATTT
14740097 TATTAATTAAATGTATTT
1 TATTAATTAAAT-TATTT
14740115 TATT
1 TATT
14740119 TATATTTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.30
16 6 0.20
17 8 0.27
18 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TATTAATTAAATTATTT
Found at i:14740126 original size:28 final size:31
Alignment explanation
Indices: 14740065--14740127 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 31
14740055 ATTAAAATAG
* *
14740065 TATTAATTAAATTTATTTATTTATTTATTTTT
1 TATTAATTAAATGTA-TTATTTATTTATTATT
14740097 TATTAATTAAATGTA-T-TTTATTTA-TATT
1 TATTAATTAAATGTATTATTTATTTATTATT
14740125 TAT
1 TAT
14740128 GTATGATGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 6 0.21
29 8 0.28
30 1 0.03
32 14 0.48
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (31 bp):
TATTAATTAAATGTATTATTTATTTATTATT
Found at i:14740330 original size:15 final size:14
Alignment explanation
Indices: 14740305--14740347 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
14740295 ATATTTTTTA
*
14740305 TTTAAATATATATT
1 TTTAATTATATATT
14740319 TTTAATTA-ATATT
1 TTTAATTATATATT
14740332 AATTTAATTATATATT
1 --TTTAATTATATATT
14740348 AATAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 8 0.32
16 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTAATTATATATT
Found at i:14740747 original size:17 final size:17
Alignment explanation
Indices: 14740725--14740759 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14740715 ATAAGTAAAT
*
14740725 ATCTCATTTATAAAAAA
1 ATCTCATTCATAAAAAA
14740742 ATCTCATTCATAAAAAA
1 ATCTCATTCATAAAAAA
14740759 A
1 A
14740760 GGGTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (17 bp):
ATCTCATTCATAAAAAA
Found at i:14746113 original size:16 final size:16
Alignment explanation
Indices: 14746092--14746126 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14746082 TAATTATGGT
*
14746092 TATGTATATATATATA
1 TATGTATATATATAAA
14746108 TATGTATATATATAAA
1 TATGTATATATATAAA
14746124 TAT
1 TAT
14746127 AATAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (16 bp):
TATGTATATATATAAA
Found at i:14746201 original size:17 final size:18
Alignment explanation
Indices: 14746179--14746212 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14746169 ATAAGGGAGT
14746179 AAAATATAATA-ATAATG
1 AAAATATAATATATAATG
14746196 AAAATATAATATATAAT
1 AAAATATAATATATAAT
14746213 AATAGTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AAAATATAATATATAATG
Found at i:14748257 original size:2 final size:2
Alignment explanation
Indices: 14748250--14748277 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14748240 TATGGTTATG
14748250 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14748278 AATAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14748351 original size:17 final size:18
Alignment explanation
Indices: 14748329--14748362 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14748319 ATAAGGGAGT
14748329 AAAATATAATA-ATAATG
1 AAAATATAATATATAATG
14748346 AAAATATAATATATAAT
1 AAAATATAATATATAAT
14748363 AATAGTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AAAATATAATATATAATG
Found at i:14753950 original size:14 final size:14
Alignment explanation
Indices: 14753931--14753957 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14753921 CTCTGGCTCT
14753931 GTTGTTCTCTCTTC
1 GTTGTTCTCTCTTC
14753945 GTTGTTCTCTCTT
1 GTTGTTCTCTCTT
14753958 GGTCTCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.26, G:0.15, T:0.59
Consensus pattern (14 bp):
GTTGTTCTCTCTTC
Found at i:14753965 original size:10 final size:10
Alignment explanation
Indices: 14753950--14753975 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14753940 TCTTCGTTGT
14753950 TCTCTCTTGG
1 TCTCTCTTGG
14753960 TCTCTCTTGG
1 TCTCTCTTGG
14753970 TCTCTC
1 TCTCTC
14753976 CTTTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.35, G:0.15, T:0.50
Consensus pattern (10 bp):
TCTCTCTTGG
Found at i:14754418 original size:3 final size:3
Alignment explanation
Indices: 14754404--14754492 Score: 87
Period size: 3 Copynumber: 30.0 Consensus size: 3
14754394 GTTGTATCTG
* * *
14754404 TAA TAA -AA TAA TAA TAT TAA TAA TAA TAA TAT TAA TAA CAA -AA CTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
*
14754451 TAA TAA TAA AAA TAA TAA TAA -ATA TAA TAA -ATA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA
14754493 AACCAAATGT
Statistics
Matches: 72, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.08
3 62 0.86
4 4 0.06
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:14754779 original size:120 final size:122
Alignment explanation
Indices: 14754636--14754916 Score: 342
Period size: 120 Copynumber: 2.3 Consensus size: 122
14754626 GTTGAATAAA
* *
14754636 TTCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTGCTGG-GGATGATGTTGACCT
1 TTCTT-TCTTT-TTCAGATGAGTTCTTCTCATTATGAACTTT-TGCTGGAGGATGATGCTAACCT
* * * *
14754700 AT-TTCCT-TATGATAGAGTCATTCAAAAGGTTAAATAAGCTCTTCTCATTATGAACTTC
63 ATCTACCTCTATGATAGAATCATGCAAAAGGTTAAACAAGCTCTTCTCATTATGAACTTC
* * *
14754758 TTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAGGTTGATGCTAATCTA
1 TTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTTGCTGG--AGGATGATGCTAACCTA
* * * * *
14754823 TCTACTTCTGTGATAGAATTATGCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTC
64 TCTACCTCTATGATAGAATCATGCAAAAGGTTAAACAAGCTCTTCTCATTATGAACTTC
14754882 TTC-TTC---TTCAGATGAGTTCTTCTCATTATGAACTT
1 TTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTT
14754917 CTTTTTCTTC
Statistics
Matches: 140, Mismatches: 14, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
119 5 0.04
120 59 0.42
121 5 0.04
122 18 0.13
123 6 0.04
124 47 0.34
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (122 bp):
TTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTTGCTGGAGGATGATGCTAACCTATC
TACCTCTATGATAGAATCATGCAAAAGGTTAAACAAGCTCTTCTCATTATGAACTTC
Found at i:14754903 original size:36 final size:36
Alignment explanation
Indices: 14754863--14754951 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
14754853 TTGAACAAGC
* *
14754863 TCTTCTCATTGTGAACTTCTTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAAT
*
14754899 TCTTCTCATTATGAACTTCTTTTTCTTCAGATGAAT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAAT
14754935 TCTTCTCATTATGAACT
1 TCTTCTCATTATGAACT
14754952 CTACCTGGCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.48
Consensus pattern (36 bp):
TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAAT
Found at i:14755080 original size:38 final size:39
Alignment explanation
Indices: 14755005--14755107 Score: 145
Period size: 38 Copynumber: 2.6 Consensus size: 39
14754995 AGGTTGAACA
14755005 AATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGACG
1 AATTCTTCTCATTATGAAC----TCTTCCTTCTTCAGATGACG
14755048 AATTCTTCTCATTATGAACTCTT-CTTCTTCAGATGACG
1 AATTCTTCTCATTATGAACTCTTCCTTCTTCAGATGACG
* *
14755086 AGTTCTTCTGATTATGAACTCT
1 AATTCTTCTCATTATGAACTCT
14755108 ATCTGGCAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 35 0.60
39 4 0.07
43 19 0.33
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (39 bp):
AATTCTTCTCATTATGAACTCTTCCTTCTTCAGATGACG
Found at i:14755091 original size:19 final size:19
Alignment explanation
Indices: 14755033--14755094 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
14755023 CTTATTCTTC
14755033 CTTCTTCAGATGACGAATT
1 CTTCTTCAGATGACGAATT
* **
14755052 CTTC-TCATTATGAAC-TCTT
1 CTTCTTCA-GATG-ACGAATT
*
14755071 CTTCTTCAGATGACGAGTT
1 CTTCTTCAGATGACGAATT
14755090 CTTCT
1 CTTCT
14755095 GATTATGAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
18 5 0.15
19 23 0.70
20 5 0.15
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (19 bp):
CTTCTTCAGATGACGAATT
Found at i:14755126 original size:154 final size:145
Alignment explanation
Indices: 14754846--14755177 Score: 495
Period size: 154 Copynumber: 2.2 Consensus size: 145
14754836 TAGAATTATG
* *
14754846 CAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
*
14754911 GAACTTCTTTTTCTTCAGATGAATTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCA
66 GAACTTCTTCTTCTTCAGATGAATTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCA
14754976 AATGATGAATTTAAA
131 AATGATGAATTTAAA
*
14754991 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGACGAATTCTTC
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAAC---TTCTT-CTTCTTCAGATGA-G--TTCTTC
* *
14755056 TCATTATGAAC-TCTTCTTCTTCAGATGACGAGTTCTTCTGATTATGAACTCTATCTGGCAATGT
59 TCATTATGAACTTCTTCTTCTTCAGATGA--A-TTCTTCTCATTATGAACTCTACCTGGCAATGT
*
14755120 TAATCCATCAATTGATGAATTTAAA
121 TAATCCATCAAATGATGAATTTAAA
*
14755145 CAAAAGTTTGAACAAGTTCTTCTCATTATGAAC
1 CAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
14755178 AAAAGCTTTT
Statistics
Matches: 168, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
145 30 0.18
148 5 0.03
149 13 0.08
150 1 0.01
151 16 0.10
152 17 0.10
153 1 0.01
154 85 0.51
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.39
Consensus pattern (145 bp):
CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
GAACTTCTTCTTCTTCAGATGAATTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCA
AATGATGAATTTAAA
Found at i:14755204 original size:98 final size:98
Alignment explanation
Indices: 14755088--14755275 Score: 367
Period size: 98 Copynumber: 1.9 Consensus size: 98
14755078 AGATGACGAG
*
14755088 TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGTT
1 TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGGT
14755153 TGAACAAGTTCTTCTCATTATGAACAAAAGCTT
66 TGAACAAGTTCTTCTCATTATGAACAAAAGCTT
14755186 TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGGT
1 TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGGT
14755251 TGAACAAGTTCTTCTCATTATGAAC
66 TGAACAAGTTCTTCTCATTATGAAC
14755276 TTCTTCTTCC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (98 bp):
TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGGT
TGAACAAGTTCTTCTCATTATGAACAAAAGCTT
Found at i:14755384 original size:113 final size:113
Alignment explanation
Indices: 14755186--14755564 Score: 632
Period size: 113 Copynumber: 3.4 Consensus size: 113
14755176 ACAAAAGCTT
* * * * * * * * **
14755186 TTCTTCTGATTATGAACTCTATCTGGCAATGTTAATCCATCAATTGATGAATTTAAACAAAAGGT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAGGCAAAAGGT
*
14755251 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGTG
66 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
14755299 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAGGCAAAAGGT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAGGCAAAAGGT
14755364 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
66 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
*
14755412 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCAGGCAAAAGGT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAGGCAAAAGGT
14755477 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
66 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
* *
14755525 TTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCAT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCAT
14755565 TGTTATGGAT
Statistics
Matches: 252, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 252 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAGGCAAAAGGT
TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAG
Found at i:14756430 original size:115 final size:115
Alignment explanation
Indices: 14756257--14756572 Score: 544
Period size: 115 Copynumber: 2.8 Consensus size: 115
14756247 GATCATGCAG
* * * *
14756257 TTCATCTTTTAATTCCAATGATTGGTTCTGTAG-TTCCTACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
14756321 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
14756371 TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
14756436 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
*** * *
14756486 TTCATCTTTCAAATTTGATGATTGGTTCTGTGGTTTCATATCAAACCAGATCAAATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
14756551 AACACTTCCAGAAGATGCTATT
66 AACACTTCCAGAAGATGCTATT
14756573 AGCACATTTA
Statistics
Matches: 192, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
114 30 0.16
115 162 0.84
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (115 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
Found at i:14756677 original size:83 final size:83
Alignment explanation
Indices: 14756527--14756745 Score: 366
Period size: 83 Copynumber: 2.6 Consensus size: 83
14756517 GGTTTCATAT
* * * * *
14756527 CAAACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTTATCTTTCTAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAA
14756592 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
*
14756610 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAA
14756675 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
* *
14756693 CAAACCAGATCAGATAACTCAAAGACCACTTCTAGAAGATGCTATGAGCACAT
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACAT
14756746 GGCATTTGTT
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 128 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (83 bp):
CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAA
TTCAATGATTGGTTTTAC
Found at i:14757911 original size:7 final size:7
Alignment explanation
Indices: 14757894--14757941 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
14757884 TGACCCCCCT
14757894 TTTTCTTC
1 TTTT-TTC
14757902 TTTTTTC
1 TTTTTTC
14757909 TTTTTTC
1 TTTTTTC
14757916 -TTTTTC
1 TTTTTTC
*
14757922 TCTCTTT-
1 T-TTTTTC
14757929 TTTTTTC
1 TTTTTTC
14757936 TTTTTT
1 TTTTTT
14757942 TTCTCTTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
6 10 0.29
7 17 0.49
8 8 0.23
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:14757920 original size:23 final size:24
Alignment explanation
Indices: 14757892--14757947 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
14757882 CTTGACCCCC
14757892 CTTTTTCT-TCTTTTTTCTTT-TTT
1 CTTTTTCTCTCTTTTTT-TTTCTTT
14757915 CTTTTTCTCTCTTTTTTTTTCTTT
1 CTTTTTCTCTCTTTTTTTTTCTTT
14757939 -TTTTTCTCT
1 CTTTTTCTCT
14757948 TCAAGCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 20 0.65
24 11 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (24 bp):
CTTTTTCTCTCTTTTTTTTTCTTT
Found at i:14765294 original size:15 final size:15
Alignment explanation
Indices: 14765271--14765302 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14765261 TGAAATGAAT
14765271 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
14765286 AATGCATGTATGCAA
1 AATGAATGTATGCAA
14765301 AA
1 AA
14765303 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:14770368 original size:10 final size:10
Alignment explanation
Indices: 14770353--14770378 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14770343 TCTTCGTTGT
14770353 TCTCTCTCGG
1 TCTCTCTCGG
14770363 TCTCTCTCGG
1 TCTCTCTCGG
14770373 TCTCTC
1 TCTCTC
14770379 CTTTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.42, G:0.15, T:0.42
Consensus pattern (10 bp):
TCTCTCTCGG
Found at i:14770821 original size:3 final size:3
Alignment explanation
Indices: 14770807--14770895 Score: 94
Period size: 3 Copynumber: 30.0 Consensus size: 3
14770797 GTTGTATCTG
* * *
14770807 TAA TAA -AA TAA TAA TAT TAA TAA TAA TAA TAT TAA TAA CAA -AA CTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* *
14770854 TAA TAA TAA AAA TAA TAA TAA AAA TAA TAA -ATA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
14770896 AACCAAATGT
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
2 5 0.07
3 64 0.89
4 3 0.04
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:14772132 original size:12 final size:12
Alignment explanation
Indices: 14772115--14772155 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
14772105 TCAAGTTATG
14772115 AAAAATTATATA
1 AAAAATTATATA
14772127 AAAAATGTATATA
1 AAAAAT-TATATA
* *
14772140 ACATATTATATA
1 AAAAATTATATA
14772152 AAAA
1 AAAA
14772156 TAAATTAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (12 bp):
AAAAATTATATA
Found at i:14784015 original size:3 final size:3
Alignment explanation
Indices: 14784007--14784032 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14783997 CATAACATTT
14784007 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
14784033 TTATCAACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14786010 original size:65 final size:62
Alignment explanation
Indices: 14785917--14786044 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 62
14785907 CAGCGTGTGG
14785917 TTGACAATGAATTAGGTCAGTCCTTGAACATTATCCTTCAAAATTGCCACCTTTTAGAAGAAT
1 TTGACAATGAATTAGGTCAGTCCTTGAACATTATCCTTCAAAATTGCCACC-TTTAGAAGAAT
*
14785980 TTGACAATGAATTAAGTGTCAGTCCTTGAACATTATCCTTCAAATTTGCCACCTTTAGAAGAAT
1 TTGACAATGAATT-AG-GTCAGTCCTTGAACATTATCCTTCAAAATTGCCACCTTTAGAAGAAT
14786044 T
1 T
14786045 GGAAAATATG
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
63 13 0.21
64 14 0.23
65 35 0.56
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (62 bp):
TTGACAATGAATTAGGTCAGTCCTTGAACATTATCCTTCAAAATTGCCACCTTTAGAAGAAT
Found at i:14787074 original size:16 final size:16
Alignment explanation
Indices: 14787053--14787083 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14787043 AATCGTCTTG
14787053 TCTTTAGGACCCTCTC
1 TCTTTAGGACCCTCTC
14787069 TCTTTAGGACCCTCT
1 TCTTTAGGACCCTCT
14787084 GATACTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.35, G:0.13, T:0.39
Consensus pattern (16 bp):
TCTTTAGGACCCTCTC
Found at i:14790257 original size:35 final size:35
Alignment explanation
Indices: 14790218--14790297 Score: 135
Period size: 34 Copynumber: 2.3 Consensus size: 35
14790208 TTATCCCTAA
14790218 AAAGTATTAAAATGCTTTGAGGTTTTATTTAGTTC
1 AAAGTATTAAAATGCTTTGAGGTTTTATTTAGTTC
*
14790253 AAAGTA-TCAAATGCTTTGAGGTTTTATTTAGTTC
1 AAAGTATTAAAATGCTTTGAGGTTTTATTTAGTTC
*
14790287 GAAGTATTAAA
1 AAAGTATTAAA
14790298 TGATGTGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 32 0.78
35 9 0.22
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.42
Consensus pattern (35 bp):
AAAGTATTAAAATGCTTTGAGGTTTTATTTAGTTC
Found at i:14790378 original size:25 final size:25
Alignment explanation
Indices: 14790332--14790379 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14790322 ATTTTTTAAT
* ** *
14790332 AGATAAAAACAACATTACATTAAGA
1 AGATAAAAACAAAAAAAAATTAAGA
14790357 AGATAAAAACAAAAAAAAATTAA
1 AGATAAAAACAAAAAAAAATTAA
14790380 CACATTACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.69, C:0.08, G:0.06, T:0.17
Consensus pattern (25 bp):
AGATAAAAACAAAAAAAAATTAAGA
Found at i:14791411 original size:18 final size:19
Alignment explanation
Indices: 14791388--14791427 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
14791378 AGTGAATTAG
14791388 TTGGCCACTGAAAAGT-TA
1 TTGGCCACTGAAAAGTGTA
*
14791406 TTGGCCGCTGAAAAGTGTA
1 TTGGCCACTGAAAAGTGTA
14791425 TTG
1 TTG
14791428 ATTGGCCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (19 bp):
TTGGCCACTGAAAAGTGTA
Found at i:14791474 original size:31 final size:31
Alignment explanation
Indices: 14791439--14791507 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
14791429 TTGGCCACTG
14791439 AAAGTTTCTGAATGAAATGATATATCACAAA
1 AAAGTTTCTGAATGAAATGATATATCACAAA
* * **
14791470 AAAGTTTCTGAATTAAGTGATATATCACTGA
1 AAAGTTTCTGAATGAAATGATATATCACAAA
14791501 AAAGTTT
1 AAAGTTT
14791508 ATGTACCCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.33
Consensus pattern (31 bp):
AAAGTTTCTGAATGAAATGATATATCACAAA
Found at i:14794825 original size:2 final size:2
Alignment explanation
Indices: 14794820--14794888 Score: 108
Period size: 2 Copynumber: 35.5 Consensus size: 2
14794810 AACATAAAAA
14794820 AT AT AT AT ACT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14794862 AT A- AT AT AT AT -T AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14794889 GTACTTAAAT
Statistics
Matches: 63, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
1 3 0.05
2 58 0.92
3 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14795589 original size:23 final size:23
Alignment explanation
Indices: 14795563--14795636 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
14795553 GATTCGAGGG
14795563 TTCTACGCTGTCCTTCGGGACAA
1 TTCTACGCTGTCCTTCGGGACAA
* *
14795586 TTCTACG-TGGTCTTTCGGGATAA
1 TTCTACGCT-GTCCTTCGGGACAA
* *
14795609 TTCTACGCGGTCCTTCAGGACAA
1 TTCTACGCTGTCCTTCGGGACAA
14795632 TTCTA
1 TTCTA
14795637 GTGACAACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (23 bp):
TTCTACGCTGTCCTTCGGGACAA
Found at i:14796839 original size:15 final size:15
Alignment explanation
Indices: 14796819--14796849 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14796809 ATTTATATAA
14796819 TTTAATTACCTAGAC
1 TTTAATTACCTAGAC
14796834 TTTAATTACCTAGAC
1 TTTAATTACCTAGAC
14796849 T
1 T
14796850 ATCAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (15 bp):
TTTAATTACCTAGAC
Found at i:14796889 original size:27 final size:25
Alignment explanation
Indices: 14796853--14796903 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
14796843 CTAGACTATC
*
14796853 AAAACTTAATCCAATTATAATCTAATT
1 AAAAATTAATCCAATTA-AAT-TAATT
14796880 AAAAATTAATCCAATTAAATTAAT
1 AAAAATTAATCCAATTAAATTAAT
14796904 ATCATATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 3 0.13
27 16 0.70
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (25 bp):
AAAAATTAATCCAATTAAATTAATT
Found at i:14802789 original size:20 final size:20
Alignment explanation
Indices: 14802764--14802870 Score: 121
Period size: 20 Copynumber: 5.3 Consensus size: 20
14802754 AATTTGTAAA
*
14802764 TCGCAACATAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
14802784 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
* *
14802804 TTGCAATGC-CA-TAGTCAAAT
1 TCGCAA--CACAGAAGTCAAAT
*
14802824 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
14802844 TCGCAACGC-GATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
14802864 TCGCAAC
1 TCGCAAC
14802871 GCGAAACACA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
18 1 0.01
19 3 0.04
20 68 0.91
21 2 0.03
22 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:14802812 original size:60 final size:61
Alignment explanation
Indices: 14802743--14802875 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 61
14802733 AGTTTCCAAT
* * * *
14802743 TTCGTAATGCGAATTTGT-AAA-TCGCAACATAGAAGTCAAATTCGCAACACAGA-AGTCAAA
1 TTCGCAATGCGAA-TAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACAC-GATAGTCAAA
* * *
14802803 TTTGCAATGC-CATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGATAGTCAAA
1 TTCGCAATGCGAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACACGATAGTCAAA
*
14802863 TTCGCAACGCGAA
1 TTCGCAATGCGAA
14802876 ACACAATATT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
58 3 0.05
59 6 0.10
60 49 0.83
61 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (61 bp):
TTCGCAATGCGAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACACGATAGTCAAA
Found at i:14802828 original size:40 final size:40
Alignment explanation
Indices: 14802776--14802870 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
14802766 GCAACATAGA
* * *
14802776 AGTCAAATTCGCAACACAGAAGTCAAATTTGCAATGCCAT
1 AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCCAT
*
14802816 AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAT
1 AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCCAT
14802856 AGTCAAATTCGCAAC
1 AGTCAAATTCGCAAC
14802871 GCGAAACACA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (40 bp):
AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCCAT
Found at i:14803011 original size:22 final size:22
Alignment explanation
Indices: 14802986--14803036 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
14802976 CTACGGCGAC
*
14802986 ATCCGTCCCCATCTCCGATGAA
1 ATCCGTCCCCATCTCCGACGAA
14803008 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
*
14803030 ATTCGTC
1 ATCCGTC
14803037 TATCTCCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.41, G:0.14, T:0.24
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:14803465 original size:19 final size:20
Alignment explanation
Indices: 14803443--14803482 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14803433 AAATCGCAAC
14803443 GTGATTTT-AGTTTCGCGTT
1 GTGATTTTCAGTTTCGCGTT
*
14803462 GTGATTTTCATTTTCGCGTT
1 GTGATTTTCAGTTTCGCGTT
14803482 G
1 G
14803483 CAATTTTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.10, C:0.12, G:0.25, T:0.53
Consensus pattern (20 bp):
GTGATTTTCAGTTTCGCGTT
Found at i:14803488 original size:14 final size:14
Alignment explanation
Indices: 14803471--14803504 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14803461 TGTGATTTTC
14803471 ATTTTCGCGTTGCA
1 ATTTTCGCGTTGCA
* *
14803485 ATTTTCTCGTTGCG
1 ATTTTCGCGTTGCA
14803499 ATTTTC
1 ATTTTC
14803505 ATTTTCGCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.50
Consensus pattern (14 bp):
ATTTTCGCGTTGCA
Found at i:14803488 original size:20 final size:20
Alignment explanation
Indices: 14803453--14803523 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
14803443 GTGATTTTAG
**
14803453 TTTCGCGTTGTGATTTTCAT
1 TTTCGCGTTGCAATTTTCAT
14803473 TTTCGCGTTGCAATTTTC--
1 TTTCGCGTTGCAATTTTCAT
*
14803491 --T--CGTTGCGATTTTCAT
1 TTTCGCGTTGCAATTTTCAT
14803507 TTTCGCGTTGCGAATTT
1 TTTCGCGTTGC-AATTT
14803524 AAGTTTCAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
14 12 0.30
16 1 0.03
18 1 0.03
20 22 0.55
21 4 0.10
ACGTcount: A:0.11, C:0.18, G:0.20, T:0.51
Consensus pattern (20 bp):
TTTCGCGTTGCAATTTTCAT
Found at i:14803502 original size:34 final size:35
Alignment explanation
Indices: 14803453--14803523 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 35
14803443 GTGATTTTAG
*
14803453 TTTCGCGTTGTGATTTTCATTTTCGCGTTGC-AAT
1 TTTCGCGTTGCGATTTTCATTTTCGCGTTGCGAAT
*
14803487 TTTCTCGTTGCGATTTTCATTTTCGCGTTGCGAAT
1 TTTCGCGTTGCGATTTTCATTTTCGCGTTGCGAAT
14803522 TT
1 TT
14803524 AAGTTTCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 29 0.85
35 5 0.15
ACGTcount: A:0.11, C:0.18, G:0.20, T:0.51
Consensus pattern (35 bp):
TTTCGCGTTGCGATTTTCATTTTCGCGTTGCGAAT
Found at i:14803530 original size:20 final size:20
Alignment explanation
Indices: 14803487--14803530 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
14803477 GCGTTGCAAT
* * * *
14803487 TTTCTCGTTGCGATTTTCAT
1 TTTCGCGTTGCGAATTTAAG
14803507 TTTCGCGTTGCGAATTTAAG
1 TTTCGCGTTGCGAATTTAAG
14803527 TTTC
1 TTTC
14803531 AGAAGCTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.18, G:0.18, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTAAG
Found at i:14805704 original size:42 final size:42
Alignment explanation
Indices: 14805657--14805755 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
14805647 GATGCACCTA
* *
14805657 TCATCATTCAAGAGGCGCCTCCTA-TCGTTCAAGAGGCCCCTC
1 TCATCATTCAAGAGGCCCCTCCCACT-GTTCAAGAGGCCCCTC
* *
14805699 TCATCA-TCGAAGAAGCCCCTCCCACTGTTCAAGAGGCCCCTG
1 TCATCATTC-AAGAGGCCCCTCCCACTGTTCAAGAGGCCCCTC
*
14805741 TCATCGTTCAAGAGG
1 TCATCATTCAAGAGG
14805756 TCTCGTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.04
42 43 0.90
43 3 0.06
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.22
Consensus pattern (42 bp):
TCATCATTCAAGAGGCCCCTCCCACTGTTCAAGAGGCCCCTC
Found at i:14805711 original size:21 final size:20
Alignment explanation
Indices: 14805657--14805755 Score: 65
Period size: 21 Copynumber: 4.7 Consensus size: 20
14805647 GATGCACCTA
*
14805657 TCATCATTCAAGAGGCGCCTC
1 TCATCA-TCAAGAGGCCCCTC
*
14805678 -CTATCGTTCAAGAGGCCCCTC
1 TC-ATC-ATCAAGAGGCCCCTC
*
14805699 TCATCATCGAAGAAGCCCCTC
1 TCATCATC-AAGAGGCCCCTC
* ** *
14805720 CCACTGTTCAAGAGGCCCCTG
1 TCA-TCATCAAGAGGCCCCTC
*
14805741 TCATCGTTCAAGAGG
1 TCATC-ATCAAGAGG
14805756 TCTCGTCTGC
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
20 4 0.07
21 53 0.87
22 4 0.07
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.22
Consensus pattern (20 bp):
TCATCATCAAGAGGCCCCTC
Found at i:14807015 original size:24 final size:24
Alignment explanation
Indices: 14806983--14807035 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
14806973 ATTTGTTGTT
14806983 TGTTGGTTTTAGATGTGTAGAAAG
1 TGTTGGTTTTAGATGTGTAGAAAG
14807007 TGTTGGTTTTAGATGTGTAGAAAG
1 TGTTGGTTTTAGATGTGTAGAAAG
14807031 TGTTG
1 TGTTG
14807036 TTTGGCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (24 bp):
TGTTGGTTTTAGATGTGTAGAAAG
Found at i:14807287 original size:66 final size:65
Alignment explanation
Indices: 14807126--14807301 Score: 232
Period size: 66 Copynumber: 2.6 Consensus size: 65
14807116 TGGGGTACAC
14807126 TTTTTTTGCTTGTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAATTGATGAAGAAATAA
1 TTTTTTTGCTTGTTTAATTG-ATTTGT--A---AAAGTTGATTTGTTTAATTGATGAAGAAATAA
14807190 GAATTA
60 GAATTA
* *
14807196 TTTTTTT-CTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAGTTTGATG-TGTAAATAAGAAT
1 TTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTA-ATTGATGAAG-AAATAAGAAT
14807259 TA
64 TA
*
14807261 TTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTAATTTGTT
1 TTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTT
14807302 GTTTTAAATT
Statistics
Matches: 99, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
64 17 0.17
65 25 0.25
66 32 0.32
67 1 0.01
68 4 0.04
69 13 0.13
70 7 0.07
ACGTcount: A:0.28, C:0.02, G:0.16, T:0.53
Consensus pattern (65 bp):
TTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAAGAAATAAGAATTA
Found at i:14807379 original size:20 final size:20
Alignment explanation
Indices: 14807349--14807410 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
14807339 AGACCTGTTG
14807349 AAGGTAAATTCGCAACGCGA
1 AAGGTAAATTCGCAACGCGA
14807369 AA-GTCAAATTCGCAACGCGA
1 AAGGT-AAATTCGCAACGCGA
*
14807389 AAGGTAAATTCGCAACGAGA
1 AAGGTAAATTCGCAACGCGA
14807409 AA
1 AA
14807411 TAAGCGTTGC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 2 0.05
20 35 0.90
21 2 0.05
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGGTAAATTCGCAACGCGA
Found at i:14807438 original size:34 final size:34
Alignment explanation
Indices: 14807394--14807478 Score: 107
Period size: 34 Copynumber: 2.5 Consensus size: 34
14807384 CGCGAAAGGT
* *
14807394 AAATTCGCAACGAGAAATAAGCGTTGCGATAGTC
1 AAATTCGCAACGAGAAATAAGCGTTGAGAAAGTC
* *
14807428 AAATTTGCAACGCGAAATAAGCGTTGAGAAAGTC
1 AAATTCGCAACGAGAAATAAGCGTTGAGAAAGTC
* * *
14807462 ATATTCGTAACGCGAAA
1 AAATTCGCAACGAGAAA
14807479 GTCAAATTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.21
Consensus pattern (34 bp):
AAATTCGCAACGAGAAATAAGCGTTGAGAAAGTC
Found at i:14808897 original size:25 final size:25
Alignment explanation
Indices: 14808869--14808918 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14808859 CATTATTTTC
*
14808869 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
14808894 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
14808919 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:14809054 original size:20 final size:20
Alignment explanation
Indices: 14809006--14809055 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
14808996 CGCGAAATAA
* *
14809006 GCGTTGCGATAGTCAAATTT
1 GCGTTGCGAAAGTCAAATTC
***
14809026 GCAACGCGAAAGTCAAATTC
1 GCGTTGCGAAAGTCAAATTC
14809046 GCGTTGCGAA
1 GCGTTGCGAA
14809056 TTTTACTTTC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (20 bp):
GCGTTGCGAAAGTCAAATTC
Found at i:14809380 original size:18 final size:18
Alignment explanation
Indices: 14809357--14809392 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14809347 AAGCCGGTTG
*
14809357 TGATTGAGATTTTGATTT
1 TGATTGAGATTTAGATTT
*
14809375 TGATTGCGATTTAGATTT
1 TGATTGAGATTTAGATTT
14809393 CCTTTTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.22, T:0.53
Consensus pattern (18 bp):
TGATTGAGATTTAGATTT
Found at i:14812701 original size:20 final size:20
Alignment explanation
Indices: 14812671--14812777 Score: 117
Period size: 20 Copynumber: 5.3 Consensus size: 20
14812661 GAAATTCCGA
*
14812671 GTTGTGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTTTGT
* *
14812691 GTTACGAATTTGACTTCTGT
1 GTTGCGAATTTGACTTTTGT
* * *
14812711 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTTTTGT
* *
14812731 GTTGCGAATTTGA-TTATCGC
1 GTTGCGAATTTGACTT-TTGT
*
14812751 GTTGCGAATTTGACTTCTGT
1 GTTGCGAATTTGACTTTTGT
14812771 GTTGCGA
1 GTTGCGA
14812778 TTTACAAATT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
19 1 0.01
20 70 0.96
21 2 0.03
ACGTcount: A:0.18, C:0.14, G:0.25, T:0.43
Consensus pattern (20 bp):
GTTGCGAATTTGACTTTTGT
Found at i:14812775 original size:40 final size:40
Alignment explanation
Indices: 14812651--14812777 Score: 132
Period size: 40 Copynumber: 3.1 Consensus size: 40
14812641 TGAAATTCAA
* * * * *
14812651 TTGCGAATTTGAAATTCCGAGTTGTGAATTTGACTTTTGTG
1 TTGCGAATTTG-ACTTCTGCGTTGCGAATTTGACTTCTGTG
* * *
14812692 TTACGAATTTGACTTCTGTGTTGCGAATTTGACTATC-GCG
1 TTGCGAATTTGACTTCTGCGTTGCGAATTTGACT-TCTGTG
*
14812732 TTGCGAATTTGA-TTATCGCGTTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTCT-GCGTTGCGAATTTGACTTCTGTG
14812772 TTGCGA
1 TTGCGA
14812778 TTTACAAATT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
39 5 0.07
40 56 0.78
41 11 0.15
ACGTcount: A:0.20, C:0.14, G:0.24, T:0.42
Consensus pattern (40 bp):
TTGCGAATTTGACTTCTGCGTTGCGAATTTGACTTCTGTG
Found at i:14812794 original size:20 final size:20
Alignment explanation
Indices: 14812771--14812815 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
14812761 TGACTTCTGT
14812771 GTTGCGATTTACAAATTCGC
1 GTTGCGATTTACAAATTCGC
* *
14812791 GTTGCGATTTACAGATTCGT
1 GTTGCGATTTACAAATTCGC
14812811 GTTGC
1 GTTGC
14812816 AAAACTGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACAAATTCGC
Found at i:14812815 original size:60 final size:60
Alignment explanation
Indices: 14812651--14812797 Score: 167
Period size: 60 Copynumber: 2.4 Consensus size: 60
14812641 TGAAATTCAA
* * * *
14812651 TTGCGAATTTGA-AATTCCGAGTTGTGAATTTGACTT-TTGTGTTACGAATTTGACTTCTGTG
1 TTGCGAATTTGACAA-T-CGCGTTGCGAATTTGA-TTATCGTGTTGCGAATTTGACTTCTGTG
* *
14812712 TTGCGAATTTGACTATCGCGTTGCGAATTTGATTATCGCGTTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACAATCGCGTTGCGAATTTGATTATCGTGTTGCGAATTTGACTTCTGTG
14812772 TTGCG-ATTT-ACAAATTCGCGTTGCGA
1 TTGCGAATTTGAC-AA-TCGCGTTGCGA
14812798 TTTACAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
58 2 0.03
59 7 0.09
60 52 0.69
61 13 0.17
62 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (60 bp):
TTGCGAATTTGACAATCGCGTTGCGAATTTGATTATCGTGTTGCGAATTTGACTTCTGTG
Found at i:14812869 original size:19 final size:19
Alignment explanation
Indices: 14812837--14812873 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14812827 CTGGGTTGCG
*
14812837 AAATTGGAGTTCGCGTTGA
1 AAATTGGAGATCGCGTTGA
*
14812856 AAATTTGAGATCGCGTTG
1 AAATTGGAGATCGCGTTG
14812874 TCATTTTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (19 bp):
AAATTGGAGATCGCGTTGA
Found at i:14816106 original size:15 final size:15
Alignment explanation
Indices: 14816086--14816124 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
14816076 GATCAAATAT
**
14816086 ATCAACATGATTAAC
1 ATCAACATGAGCAAC
*
14816101 ATCAACATTAGCAAC
1 ATCAACATGAGCAAC
14816116 ATCAACATG
1 ATCAACATG
14816125 GTCATTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (15 bp):
ATCAACATGAGCAAC
Found at i:14816910 original size:159 final size:161
Alignment explanation
Indices: 14816694--14817007 Score: 519
Period size: 159 Copynumber: 2.0 Consensus size: 161
14816684 CTAATAATCT
*
14816694 TGAAACATCACGCATACATAAATAATTAATTATTTTATATTTTTATTAATAAACTAAAAAT-AAA
1 TGAAACATCAC-CACACATAAATAATTAATTATTTTATATTTTTATTAATAAACTAAAAATAAAA
* * *
14816758 AACTAATAATCTTGA-AGAAATTAAATAATAATAAAAAACATTTACTAACCTTGAAAAAGATAAA
65 AAATAATAATCTTGACA-AAATAAAATAATAAT-AAAAACATTTACTAACCTTGAAAAAGAGAAA
*
14816822 AGTGCAGTCTCAATCGCAGAGGAGAGGCAAACAC
128 AGTGCAGTCACAATCGCAGAGGAGAGGCAAACAC
14816856 TGAAACATCA-CACACATAAATAATTAATTATTTT-TATTTTTATTAATAAACTAAAAATAAAAA
1 TGAAACATCACCACACATAAATAATTAATTATTTTATATTTTTATTAATAAACTAAAAATAAAAA
*
14816919 AATAATAATCTTGACAAAATAAAATAATAATAAAAACATTTACTAACCTTGGAAAAGAGAAAAGT
66 AATAATAATCTTGACAAAATAAAATAATAATAAAAACATTTACTAACCTTGAAAAAGAGAAAAGT
14816984 GCAGTCACAATCGCAGAGGAGAGG
131 GCAGTCACAATCGCAGAGGAGAGG
14817008 AGAGCGCATA
Statistics
Matches: 144, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
159 79 0.55
160 54 0.38
161 1 0.01
162 10 0.07
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (161 bp):
TGAAACATCACCACACATAAATAATTAATTATTTTATATTTTTATTAATAAACTAAAAATAAAAA
AATAATAATCTTGACAAAATAAAATAATAATAAAAACATTTACTAACCTTGAAAAAGAGAAAAGT
GCAGTCACAATCGCAGAGGAGAGGCAAACAC
Found at i:14817753 original size:4 final size:4
Alignment explanation
Indices: 14817744--14817802 Score: 91
Period size: 4 Copynumber: 14.8 Consensus size: 4
14817734 TACTCGTCAT
** *
14817744 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACGC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14817792 ATAC ATAC ATA
1 ATAC ATAC ATA
14817803 TAACAATCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:14820537 original size:24 final size:25
Alignment explanation
Indices: 14820497--14820548 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
14820487 TCTTAATTTA
14820497 TTATGAGAAAAACATAATCTCTAAC
1 TTATGAGAAAAACATAATCTCTAAC
*
14820522 TTATGAGAAAAA-ATAATCTTTAAC
1 TTATGAGAAAAACATAATCTCTAAC
14820546 TTA
1 TTA
14820549 GAAAAACACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.33
Consensus pattern (25 bp):
TTATGAGAAAAACATAATCTCTAAC
Found at i:14828384 original size:90 final size:89
Alignment explanation
Indices: 14828226--14828402 Score: 318
Period size: 90 Copynumber: 2.0 Consensus size: 89
14828216 CCTAACACAC
14828226 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
* *
14828291 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTAAATAAT
*
14828315 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTAT
14828380 ATTTAATTAATTGAAATTAAATA
65 ATTTAATTAATTGAAATTAAATA
14828403 TTCGAGATTA
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
89 34 0.40
90 50 0.60
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAAATAAT
Found at i:14832785 original size:18 final size:18
Alignment explanation
Indices: 14832762--14832803 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
14832752 CCACCATCCG
14832762 GACACCGTTCGTCGCTCC
1 GACACCGTTCGTCGCTCC
14832780 GACACCGTTCGTCGCTCC
1 GACACCGTTCGTCGCTCC
14832798 GACACC
1 GACACC
14832804 ACCAATAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.45, G:0.21, T:0.19
Consensus pattern (18 bp):
GACACCGTTCGTCGCTCC
Found at i:14833494 original size:16 final size:16
Alignment explanation
Indices: 14833473--14833508 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
14833463 ATATTTTCTA
14833473 TAAATTTTTTTGTGAC
1 TAAATTTTTTTGTGAC
*
14833489 TAAA-TTTTTTGTGCC
1 TAAATTTTTTTGTGAC
14833504 TAAAT
1 TAAAT
14833509 AATTTTGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.28, C:0.08, G:0.11, T:0.53
Consensus pattern (16 bp):
TAAATTTTTTTGTGAC
Found at i:14833628 original size:31 final size:33
Alignment explanation
Indices: 14833546--14833630 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
14833536 ATAATATTAC
* *
14833546 TTTGTCACAATTTTTTATATTGAGAAATTAATA
1 TTTGTCACAAATTTTTATTTTGAGAAATTAATA
* * * *
14833579 TTTGTTATAAATTGTTATTTTGATTAAA-TAA-A
1 TTTGTCACAAATTTTTATTTTGA-GAAATTAATA
14833611 TTTGTCA-AAATTTTTATTTT
1 TTTGTCACAAATTTTTATTTT
14833631 AACAAAATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 12 0.28
32 7 0.16
33 21 0.49
34 3 0.07
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (33 bp):
TTTGTCACAAATTTTTATTTTGAGAAATTAATA
Found at i:14833913 original size:23 final size:23
Alignment explanation
Indices: 14833864--14833913 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
14833854 TATGATGAAA
* * * *
14833864 TAAATTTAATATATTTTTTTTAT
1 TAAATTTAATATATTATTGTGAC
*
14833887 TAAATTTAATATGTTATTGTGAC
1 TAAATTTAATATATTATTGTGAC
14833910 TAAA
1 TAAA
14833914 ATCACCATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (23 bp):
TAAATTTAATATATTATTGTGAC
Found at i:14836964 original size:2 final size:2
Alignment explanation
Indices: 14836957--14837025 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
14836947 TCCCAACTCA
14836957 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14836999 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14837026 ATTCAATTTT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14838746 original size:31 final size:31
Alignment explanation
Indices: 14838711--14838775 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
14838701 CGCCTGAGCT
* * *
14838711 GAGTCGACTGAGCCGTATGATTGAGCCGATC
1 GAGTCGACTGAACCGTATGATCGAGCCGACC
* *
14838742 GAGTCGATTGAACCGTTTGATCGAGCCGACC
1 GAGTCGACTGAACCGTATGATCGAGCCGACC
14838773 GAG
1 GAG
14838776 CCACTCGATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (31 bp):
GAGTCGACTGAACCGTATGATCGAGCCGACC
Found at i:14842163 original size:19 final size:19
Alignment explanation
Indices: 14842139--14842213 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
14842129 GCCCTATTGT
14842139 GTCACCCGAATCGGATCGG
1 GTCACCCGAATCGGATCGG
14842158 GTCACCCGAATCGGATCGG
1 GTCACCCGAATCGGATCGG
14842177 GTCACCCGAATCGGATCGG
1 GTCACCCGAATCGGATCGG
* *
14842196 GTCACCTGGATCGGATCG
1 GTCACCCGAATCGGATCG
14842214 AGGATTTTAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 54 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (19 bp):
GTCACCCGAATCGGATCGG
Found at i:14850055 original size:28 final size:29
Alignment explanation
Indices: 14850014--14850082 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
14850004 TTATATTTCT
* *
14850014 TAAATCACTCAATTTTTTTTCAACAA-AA
1 TAAATCACTCAATTTCTTTTCAAAAATAA
*
14850042 TAAATCACTTAATTTCTTTTCAAAAATAA
1 TAAATCACTCAATTTCTTTTCAAAAATAA
14850071 TAAATCACTCAA
1 TAAATCACTCAA
14850083 ATTTTGCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 23 0.64
29 13 0.36
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAATCACTCAATTTCTTTTCAAAAATAA
Found at i:14851305 original size:18 final size:19
Alignment explanation
Indices: 14851282--14851318 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14851272 TTAATAAAAA
14851282 TATTATA-TTAGTTATTAT
1 TATTATATTTAGTTATTAT
*
14851300 TATTATATTTATTTATTAT
1 TATTATATTTAGTTATTAT
14851319 AATATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TATTATATTTAGTTATTAT
Found at i:14851401 original size:16 final size:16
Alignment explanation
Indices: 14851377--14851452 Score: 66
Period size: 16 Copynumber: 4.6 Consensus size: 16
14851367 ATCTATTTTA
*
14851377 ATTACTATATTTATAT
1 ATTATTATATTTATAT
14851393 ATTATTATATTT-TA-
1 ATTATTATATTTATAT
*
14851407 ATTATTTATTATTAATAATT
1 ATTA-TTA-TATTTAT-A-T
*
14851427 ATTATTATATTTATTT
1 ATTATTATATTTATAT
*
14851443 ATTATAATAT
1 ATTATTATAT
14851453 AGTTTTATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 4 0.08
15 5 0.10
16 25 0.51
17 1 0.02
18 7 0.14
19 3 0.06
20 4 0.08
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATTATATTTATAT
Found at i:14851402 original size:10 final size:10
Alignment explanation
Indices: 14851387--14851448 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
14851377 ATTACTATAT
14851387 TTATATATTA
1 TTATATATTA
*
14851397 TTATATTTTAA
1 TTATATATT-A
*
14851408 TTATTTATTA
1 TTATATATTA
14851418 TTA-ATAATTA
1 TTATAT-ATTA
14851428 TTAT-TA-TA
1 TTATATATTA
14851436 TT-TAT-TTA
1 TTATATATTA
14851444 TTATA
1 TTATA
14851449 ATATAGTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
7 1 0.02
8 9 0.21
9 4 0.10
10 20 0.48
11 8 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTATATATTA
Found at i:14851428 original size:13 final size:12
Alignment explanation
Indices: 14851392--14851450 Score: 54
Period size: 13 Copynumber: 5.0 Consensus size: 12
14851382 TATATTTATA
14851392 TATTATTAT-AT
1 TATTATTATAAT
14851403 T-TTAATTAT--T
1 TATT-ATTATAAT
14851413 TATTATTAATAAT
1 TATTATT-ATAAT
*
14851426 TATTATTATATT
1 TATTATTATAAT
14851438 TATTTATTATAAT
1 TA-TTATTATAAT
14851451 ATAGTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 7 0.17
11 10 0.25
12 6 0.15
13 17 0.43
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTATTATAAT
Found at i:14851851 original size:23 final size:23
Alignment explanation
Indices: 14851824--14851882 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
14851814 GGGGTTTTTA
14851824 AAACAAATATATTTACGAACGTT
1 AAACAAATATATTTACGAACGTT
*
14851847 AAACAAATGTATTTACGAACGTT
1 AAACAAATATATTTACGAACGTT
* *
14851870 AAACGAACATATT
1 AAACAAATATATT
14851883 CGTGAATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (23 bp):
AAACAAATATATTTACGAACGTT
Found at i:14853445 original size:33 final size:33
Alignment explanation
Indices: 14853372--14853445 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
14853362 ACATCCTTTG
*
14853372 GTGAAGATGCATAACTTGAAATGACACTCCTTA
1 GTGAAGAGGCATAACTTGAAATGACACTCCTTA
* * * *
14853405 GTTAAGAGGCATGACTTGAAATGATACTTCTT-
1 GTGAAGAGGCATAACTTGAAATGACACTCCTTA
14853437 GATGAAGAG
1 G-TGAAGAG
14853446 ACACAATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (33 bp):
GTGAAGAGGCATAACTTGAAATGACACTCCTTA
Found at i:14854160 original size:21 final size:20
Alignment explanation
Indices: 14854116--14854159 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14854106 TGTTTAGGAA
*
14854116 TTTTAAAAGGTGTCAATTAT
1 TTTTAAAAAGTGTCAATTAT
*
14854136 TTTTAAAACAGTGTTAATT-T
1 TTTTAAAA-AGTGTCAATTAT
14854156 TTTT
1 TTTT
14854160 TCTTTGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTTAAAAAGTGTCAATTAT
Found at i:14857839 original size:15 final size:15
Alignment explanation
Indices: 14857819--14857851 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
14857809 AGGTTAAGAC
14857819 CTTTAAATGAAATGA
1 CTTTAAATGAAATGA
14857834 CTTTAAATGAAATGA
1 CTTTAAATGAAATGA
14857849 CTT
1 CTT
14857852 AACCATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (15 bp):
CTTTAAATGAAATGA
Found at i:14857945 original size:23 final size:23
Alignment explanation
Indices: 14857919--14857968 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
14857909 ATTTTTTGGG
*
14857919 TGAAATGAATTAACTATTTTTCA
1 TGAAAAGAATTAACTATTTTTCA
*
14857942 TGAAAAGACTTAACTATTTTTCA
1 TGAAAAGAATTAACTATTTTTCA
14857965 TGAA
1 TGAA
14857969 TAGAGATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (23 bp):
TGAAAAGAATTAACTATTTTTCA
Found at i:14860591 original size:20 final size:21
Alignment explanation
Indices: 14860566--14860606 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14860556 CATCAGATCT
* *
14860566 GCAAGATAAATCT-TTCCTCG
1 GCAAGAAAAATATGTTCCTCG
14860586 GCAAGAAAAATATGTTCCTCG
1 GCAAGAAAAATATGTTCCTCG
14860607 CTGTCGTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (21 bp):
GCAAGAAAAATATGTTCCTCG
Found at i:14879209 original size:19 final size:19
Alignment explanation
Indices: 14879171--14879210 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14879161 AGAAACAAAA
*
14879171 TAAATAAAAATTTCATAAT
1 TAAATAAAAATTTCACAAT
14879190 TAAATAAAAAATTT-ACAAT
1 TAAAT-AAAAATTTCACAAT
14879209 TA
1 TA
14879211 CTAGTAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAATAAAAATTTCACAAT
Found at i:14886858 original size:28 final size:28
Alignment explanation
Indices: 14886807--14886860 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
14886797 GGTTGTTTGC
* *
14886807 CAATATAATCAGTATTTTATAACAAAAT
1 CAATATAATCAGTATTGTACAACAAAAT
14886835 CAATATAATCA-TAATTGTACAACAAA
1 CAATATAATCAGT-ATTGTACAACAAA
14886861 GAAGTTTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.31
Consensus pattern (28 bp):
CAATATAATCAGTATTGTACAACAAAAT
Found at i:14887606 original size:12 final size:12
Alignment explanation
Indices: 14887589--14887613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14887579 ATAACTTTAA
14887589 ATATTTATTTTG
1 ATATTTATTTTG
14887601 ATATTTATTTTG
1 ATATTTATTTTG
14887613 A
1 A
14887614 CCAAAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
ATATTTATTTTG
Found at i:14888162 original size:72 final size:74
Alignment explanation
Indices: 14888045--14888186 Score: 243
Period size: 72 Copynumber: 1.9 Consensus size: 74
14888035 TGCAAACATA
*
14888045 CTAAATGTTGGGGGATCATATTGAAAACGGATTAAATGTTGGGGGAC-T-TTGCAAATTTTAAAA
1 CTAAATGTTGGGGGATCATATTGAAAACGGACTAAATGTTGGGGGACGTATTGCAAATTTTAAAA
14888108 GTTTGGGAT
66 GTTTGGGAT
*
14888117 CTAAATGTTGGGGGATCATATTGAAAACGGACTAAATGTTGGGGGACTGTATTGCAAGTTTTAAA
1 CTAAATGTTGGGGGATCATATTGAAAACGGACTAAATGTTGGGGGAC-GTATTGCAAATTTTAAA
14888182 AGTTT
65 AGTTT
14888187 AGAGACCTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
72 46 0.71
74 1 0.02
75 18 0.28
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.33
Consensus pattern (74 bp):
CTAAATGTTGGGGGATCATATTGAAAACGGACTAAATGTTGGGGGACGTATTGCAAATTTTAAAA
GTTTGGGAT
Found at i:14888547 original size:61 final size:61
Alignment explanation
Indices: 14888468--14888619 Score: 259
Period size: 61 Copynumber: 2.5 Consensus size: 61
14888458 TACATATTCG
* * **
14888468 CATTGTGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATT
1 CATTGCGATAGTCGAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATAGTCCAAATT
14888529 CATTGCGATAGTCGAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATAGTCCAAATT
1 CATTGCGATAGTCGAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATAGTCCAAATT
*
14888590 CGTTGCGATAGTCGAAGTTCGCGTTGCGAT
1 CATTGCGATAGTCGAAGTTCGCGTTGCGAT
14888620 TTTCCAAATT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 86 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (61 bp):
CATTGCGATAGTCGAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATAGTCCAAATT
Found at i:14888594 original size:40 final size:40
Alignment explanation
Indices: 14888474--14888707 Score: 260
Period size: 40 Copynumber: 5.8 Consensus size: 40
14888464 TTCGCATTGT
* *
14888474 GATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGC
1 GATAGTCCAAGTTCGCGTTGCGATAGTCCAAATT--CGTTGC
** * * * *
14888516 GATTTTCCAAATT--CATTGCGATAGTCGAAGTTCGCGTTGC
1 GATAGTCCAAGTTCGCGTTGCGATAGTCCAAATT--CGTTGC
*
14888556 GATAGTCGAAGTTCGCGTTGCGATAGTCCAAATTCGTTGC
1 GATAGTCCAAGTTCGCGTTGCGATAGTCCAAATTCGTTGC
* **
14888596 GATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGTTGC
1 GATAGTCCAAGTTCGCGTTGCGATAGTCCAAATTCGTTGC
* *
14888636 GATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGC
1 GATAGTCCAAGTTCGCGTTGCGA--TAGTCCAAATTCGTTGC
14888678 GATAGTCCAAGTT--CGTTGCGATAGTCCAAA
1 GATAGTCCAAGTTCGCGTTGCGATAGTCCAAA
14888708 ATCGCAATGA
Statistics
Matches: 172, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 8 0.05
40 110 0.64
42 54 0.31
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (40 bp):
GATAGTCCAAGTTCGCGTTGCGATAGTCCAAATTCGTTGC
Found at i:14888610 original size:101 final size:102
Alignment explanation
Indices: 14888463--14888703 Score: 371
Period size: 101 Copynumber: 2.4 Consensus size: 102
14888453 CGATTTACAT
* *
14888463 ATTCGCATTGTGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAAT
1 ATTCGCGTTGCGATAGTCCAAGTT--CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAAT
*
14888528 TCATTGCGATAGTCGAAGTTCGCGTTGCGA-TAGTCGAA
64 TCATTGCGATAGTCGAAGTTCGCGTTGCGATTAGTCCAA
* *
14888566 GTTCGCGTTGCGATAGTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTC
1 ATTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTC
* *
14888631 GTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAA
66 ATTGCGATAGTCGAAGTTCGCGTTGCGA-TTAGTCCAA
14888669 ATT--CGTTGCGATAGTCCAAGTTCGTTGCGATAGTC
1 ATTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTC
14888704 CAAAATCGCA
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
101 99 0.78
103 28 0.22
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (102 bp):
ATTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTC
ATTGCGATAGTCGAAGTTCGCGTTGCGATTAGTCCAA
Found at i:14888655 original size:61 final size:59
Alignment explanation
Indices: 14888474--14888707 Score: 256
Period size: 61 Copynumber: 3.9 Consensus size: 59
14888464 TTCGCATTGT
* * ** *
14888474 GATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCATTGC
1 GATAGTCGAAGTTCGCGTTGCGATAGTCCAAGTT--CGTTGCGATAGTCCAAATTCGTTGC
*
14888535 GATAGTCGAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATAGTCCAAATTCGTTGC
1 GATAGTCGAAGTTCGCGTTGCGATAGTCCAAGTT--CGTTGCGATAGTCCAAATTCGTTGC
** * * *
14888596 GATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGC
1 GATAGTCGAAGTTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTCCAAATT--CGTTGC
* * *
14888657 GATTTATTCCAAATT--CGTTGCGATAGTCCAAGTTCGTTGCGATAGTCCAAA
1 GA--TAGTCGAAGTTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTCCAAA
14888708 ATCGCAATGA
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
59 17 0.11
61 126 0.83
63 8 0.05
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (59 bp):
GATAGTCGAAGTTCGCGTTGCGATAGTCCAAGTTCGTTGCGATAGTCCAAATTCGTTGC
Found at i:14889328 original size:5 final size:5
Alignment explanation
Indices: 14889320--14889358 Score: 69
Period size: 5 Copynumber: 7.6 Consensus size: 5
14889310 CCGTCTTGTC
14889320 TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGTGG TCG
1 TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCG-GG TCG
14889359 TGGTAATACG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.00, C:0.21, G:0.56, T:0.23
Consensus pattern (5 bp):
TCGGG
Found at i:14889514 original size:42 final size:41
Alignment explanation
Indices: 14889455--14889724 Score: 425
Period size: 42 Copynumber: 6.5 Consensus size: 41
14889445 TGAGATTTTG
*
14889455 GAACTTGGACTATCGCAACGAATTTGAAATAAATCGCAACGC
1 GAACTTCGACTATCGCAACGAATTTG-AATAAATCGCAACGC
* *
14889497 GAACTTCGACTATCGCAACGAACTTTGAATAAATTGCAAAGC
1 GAACTTCGACTATCGCAACGAA-TTTGAATAAATCGCAACGC
14889539 GAACTTCGACTATCGCAACGAACTTTGAATAAATCGCAACGC
1 GAACTTCGACTATCGCAACGAA-TTTGAATAAATCGCAACGC
* *
14889581 GAACTTTGACTATCGCAACGAACTTGGAATAAATCGCAACGC
1 GAACTTCGACTATCGCAACGAA-TTTGAATAAATCGCAACGC
14889623 GAACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGC
1 GAACTTCGACTATCGCAACGAATTT-GAATAAATCGCAACGC
* *
14889665 GAACTTCGACTATCGCAACGAATTTGGA-AAACCGCAACGC
1 GAACTTCGACTATCGCAACGAATTTGAATAAATCGCAACGC
14889705 GAACTTCGACTATCGCAACG
1 GAACTTCGACTATCGCAACG
14889725 CGAACTTGGA
Statistics
Matches: 215, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
40 31 0.14
41 4 0.02
42 176 0.82
43 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (41 bp):
GAACTTCGACTATCGCAACGAATTTGAATAAATCGCAACGC
Found at i:14889679 original size:21 final size:21
Alignment explanation
Indices: 14889487--14889743 Score: 210
Period size: 21 Copynumber: 12.3 Consensus size: 21
14889477 TTTGAAATAA
14889487 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
14889508 ATCGCAA--CGAACTTTGAAT
1 ATCGCAACGCGAACTTCGACT
* *
14889527 AAATTGCAAAGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* *
14889550 ATCGCAA--CGAACTTTGAAT
1 ATCGCAACGCGAACTTCGACT
*
14889569 AAATCGCAACGCGAACTTTGACT
1 --ATCGCAACGCGAACTTCGACT
* *
14889592 ATCGCAA--CGAACTTGGAAT
1 ATCGCAACGCGAACTTCGACT
14889611 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * *
14889634 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
14889653 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * **
14889676 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
*
14889695 ACCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
14889716 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
14889737 ATCGCAA
1 ATCGCAA
14889744 TACAATAGTC
Statistics
Matches: 188, Mismatches: 30, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
19 53 0.28
21 95 0.51
23 40 0.21
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:14889772 original size:21 final size:21
Alignment explanation
Indices: 14889748--14889788 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14889738 TCGCAATACA
14889748 ATAGTCAAAGTTCGCGTTGCG
1 ATAGTCAAAGTTCGCGTTGCG
*
14889769 ATAGTCCAAGTTCGCGTTGC
1 ATAGTCAAAGTTCGCGTTGC
14889789 AAATCTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (21 bp):
ATAGTCAAAGTTCGCGTTGCG
Found at i:14893879 original size:21 final size:21
Alignment explanation
Indices: 14893836--14893923 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 21
14893826 GGGTTTAATA
* * * *
14893836 TTTAAGTTTTAGGGTATGAGG
1 TTTAAGATTTATGATATGGGG
*
14893857 TTTAAGATTTATGATGTGGGG
1 TTTAAGATTTATGATATGGGG
* * * *
14893878 TTTGAGGTTTATGATTTAGGG
1 TTTAAGATTTATGATATGGGG
*
14893899 TTT-AGAGTTTATGATATGGGT
1 TTTAAGA-TTTATGATATGGGG
14893920 TTTA
1 TTTA
14893924 GGGTAGGTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
20 2 0.04
21 50 0.96
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.47
Consensus pattern (21 bp):
TTTAAGATTTATGATATGGGG
Found at i:14896795 original size:21 final size:21
Alignment explanation
Indices: 14896752--14896825 Score: 82
Period size: 20 Copynumber: 3.6 Consensus size: 21
14896742 TTTTCATAAT
*
14896752 TCGCAATGAGAA-TAC-ATAAA
1 TCGCAATGCGAATTACGA-AAA
*
14896772 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
14896793 TCGCAATGC-AAATACGTAAA
1 TCGCAATGCGAATTACGAAAA
14896813 TCGCAATGCGAAT
1 TCGCAATGCGAAT
14896826 CTTACTATCA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
20 28 0.62
21 16 0.36
22 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.20
Consensus pattern (21 bp):
TCGCAATGCGAATTACGAAAA
Found at i:14897440 original size:19 final size:19
Alignment explanation
Indices: 14897418--14897596 Score: 145
Period size: 19 Copynumber: 10.1 Consensus size: 19
14897408 GAAACCAAAA
*
14897418 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
14897437 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
14897451 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
14897470 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
14897489 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
14897503 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
14897522 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
14897536 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
14897555 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
14897575 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
14897595 TC
1 TC
14897597 AACCAAAAGA
Statistics
Matches: 129, Mismatches: 14, Indels: 34
0.73 0.08 0.19
Matches are distributed among these distances:
14 30 0.23
16 7 0.05
17 8 0.06
19 52 0.40
20 31 0.24
21 1 0.01
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:14897485 original size:52 final size:52
Alignment explanation
Indices: 14897418--14897534 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
14897408 GAAACCAAAA
* **
14897418 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
14897470 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
14897522 TCGCGTTGCGATT
1 TCGCGTTGCGATT
14897535 CTCTCGTTGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.11, C:0.23, G:0.22, T:0.44
Consensus pattern (52 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
Found at i:14897510 original size:33 final size:33
Alignment explanation
Indices: 14897473--14897571 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
14897463 TTTCATTTCG
**
14897473 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
14897506 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
14897539 CGTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 CGTTGCGATAGTCATTT-CGCGTTGCGATTCTC
14897572 ATTATCTCGT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 48 0.76
34 15 0.24
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.40
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
Found at i:14897511 original size:14 final size:14
Alignment explanation
Indices: 14897492--14897547 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
14897482 TTTCATTTCG
14897492 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
14897506 CGTTGCGATAGTCATTTCG
1 CGTTGCGAT--TC---TCT
14897525 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
14897539 CGTTGCGAT
1 CGTTGCGAT
14897548 AGTCATTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 20 0.57
16 2 0.06
17 2 0.06
19 11 0.31
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:14899740 original size:21 final size:21
Alignment explanation
Indices: 14899716--14899782 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
14899706 TCATTCCTCG
14899716 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
14899737 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
14899758 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
14899779 AGAG
1 AGAG
14899783 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:14899740 original size:42 final size:42
Alignment explanation
Indices: 14899664--14899782 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
14899654 GATGCGCCTG
* * * * * * *
14899664 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
14899706 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
14899748 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
14899783 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Done.