Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 65 of 73
Found at i:14901155 original size:14 final size:14
Alignment explanation
Indices: 14901136--14901162 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14901126 ATTGTTTAAT
14901136 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
14901150 TGATTTGTAAAAG
1 TGATTTGTAAAAG
14901163 TTAATTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:14901169 original size:14 final size:14
Alignment explanation
Indices: 14901138--14901171 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14901128 TGTTTAATTG
*
14901138 ATTTGTAAAAGGTG
1 ATTTGTAAAAGGTA
*
14901152 ATTTGTAAAAGTTA
1 ATTTGTAAAAGGTA
14901166 ATTTGT
1 ATTTGT
14901172 TTAATTGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (14 bp):
ATTTGTAAAAGGTA
Found at i:14901457 original size:19 final size:19
Alignment explanation
Indices: 14901429--14901493 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
14901419 CATTACGAAA
*
14901429 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
14901448 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
14901464 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
14901481 TTCGCATTGCGAT
1 TTCGCATTGCGAT
14901494 AATAATTTCC
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 6 0.16
16 7 0.18
17 7 0.18
19 18 0.47
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:14901491 original size:33 final size:33
Alignment explanation
Indices: 14901334--14901493 Score: 234
Period size: 33 Copynumber: 4.8 Consensus size: 33
14901324 ATTAAATTCG
*
14901334 CGTTGCGATTTTCATTTCGCATTGTGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
14901367 CGTTGCGATTTTCATTTCGCATTGCAATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* * *
14901400 CGTTGCAATTTTCATTTCGCATTACGAAATT--CG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCCT
*
14901433 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
14901466 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
14901494 AATAATTTCC
Statistics
Matches: 114, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
31 3 0.03
33 108 0.95
35 3 0.03
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:14903801 original size:12 final size:12
Alignment explanation
Indices: 14903784--14903808 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14903774 TCTTCGGGGA
14903784 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14903796 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14903808 C
1 C
14903809 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:14904017 original size:24 final size:24
Alignment explanation
Indices: 14903983--14904036 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
14903973 CTGAAATATC
*
14903983 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
14904007 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
14904031 ATCAAA
1 ATCAAA
14904037 TTTCGAATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:14904886 original size:20 final size:20
Alignment explanation
Indices: 14904863--14904906 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
14904853 CAATGCGATA
14904863 CTGACTATCGCAACGAGATT
1 CTGACTATCGCAACGAGATT
* *
14904883 CTGACTTTCGCAATGAGATT
1 CTGACTATCGCAACGAGATT
14904903 CTGA
1 CTGA
14904907 AAATCGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (20 bp):
CTGACTATCGCAACGAGATT
Found at i:14904913 original size:20 final size:20
Alignment explanation
Indices: 14904826--14904916 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
14904816 GCGAATAAGT
*
14904826 AAATCGCAATGCGAATT-TGGA
1 AAATCGCAATGAG-ATTCT-GA
* * *
14904847 AAACCGCAATGCGATACTGA
1 AAATCGCAATGAGATTCTGA
** *
14904867 CTATCGCAACGAGATTCTGA
1 AAATCGCAATGAGATTCTGA
***
14904887 CTTTCGCAATGAGATTCTGA
1 AAATCGCAATGAGATTCTGA
14904907 AAATCGCAAT
1 AAATCGCAAT
14904917 CATCTTCAAA
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 43 0.77
21 13 0.23
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (20 bp):
AAATCGCAATGAGATTCTGA
Found at i:14905154 original size:20 final size:20
Alignment explanation
Indices: 14905129--14905197 Score: 102
Period size: 20 Copynumber: 3.4 Consensus size: 20
14905119 TAACGGGGAA
14905129 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
***
14905149 ATCGCAACGCGAAAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
14905170 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
14905190 ATCGCAAC
1 ATCGCAAC
14905198 TATAAAATCG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 25 0.60
21 17 0.40
ACGTcount: A:0.41, C:0.25, G:0.22, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:14906904 original size:41 final size:42
Alignment explanation
Indices: 14906859--14906948 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
14906849 CCTCTTCAAC
* *
14906859 GATGACAATGGCCTCTTGAACG-GTGGGGGGGACTCTTGAGG
1 GATGACAAGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
* * *
14906900 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAAGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
*
14906942 AATGACA
1 GATGACA
14906949 GGTGAGTCGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 19 0.46
42 22 0.54
ACGTcount: A:0.23, C:0.16, G:0.39, T:0.22
Consensus pattern (42 bp):
GATGACAAGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
Found at i:14907349 original size:19 final size:20
Alignment explanation
Indices: 14907295--14907361 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
14907285 TAGTTTACTT
* *
14907295 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
14907315 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
14907335 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
14907354 TCGCAACG
1 TCGCAACG
14907362 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:14907369 original size:14 final size:14
Alignment explanation
Indices: 14907350--14907408 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
14907340 ATGCGAAATG
14907350 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
14907364 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
14907383 AAAATCGCAACGAC
1 AAAATCGCAACGAC
14907397 AAAATCGCAACG
1 AAAATCGCAACG
14907409 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:14907388 original size:19 final size:19
Alignment explanation
Indices: 14907334--14907392 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
14907324 GGAAATGGCT
14907334 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
14907353 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
14907367 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
14907386 ATCGCAA
1 ATCGCAA
14907393 CGACAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 10 0.30
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.52
ACGTcount: A:0.47, C:0.20, G:0.19, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:14907424 original size:33 final size:33
Alignment explanation
Indices: 14907334--14907413 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
14907324 GGAAATGGCT
14907334 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
14907367 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
14907400 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
14907414 CACAAATCGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:14907442 original size:19 final size:19
Alignment explanation
Indices: 14907420--14907516 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
14907410 GAAACACAAA
14907420 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
14907439 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
14907455 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
14907472 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
14907488 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
14907505 TCGCATTGCGAT
1 TCGCATTGCGAT
14907517 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.19
15 6 0.10
16 8 0.13
17 8 0.13
18 6 0.10
19 23 0.37
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:14907461 original size:14 final size:14
Alignment explanation
Indices: 14907442--14907500 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
14907432 TTTCATTTCG
14907442 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
14907456 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
14907473 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
14907489 CGTTGCGATTTT
1 CGTTGCGATTTT
14907501 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:14907467 original size:33 final size:33
Alignment explanation
Indices: 14907425--14907516 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
14907415 ACAAATCGCA
*
14907425 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
14907458 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
14907491 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
14907517 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:14907535 original size:20 final size:19
Alignment explanation
Indices: 14907501--14907555 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
14907491 TTGCGATTTT
*
14907501 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
14907520 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
14907540 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
14907556 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:14908110 original size:18 final size:18
Alignment explanation
Indices: 14908087--14908134 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
14908077 CGGGTCGATC
14908087 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
14908105 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
14908123 AGGTGATGGCTC
1 AGGTGATGGCTC
14908135 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:14910021 original size:20 final size:20
Alignment explanation
Indices: 14909996--14910062 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
14909986 GTATTATCTC
*
14909996 GTTGCGAAAGTCAGTATTGA
1 GTTGCGAAAGTCAGTATCGA
* *
14910016 GTTGCGAAATTAAGTATCGA
1 GTTGCGAAAGTCAGTATCGA
14910036 GTTGCGAAAGTCAGTATCGA
1 GTTGCGAAAGTCAGTATCGA
14910056 GTTGCGA
1 GTTGCGA
14910063 TTTTGTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (20 bp):
GTTGCGAAAGTCAGTATCGA
Found at i:14910089 original size:41 final size:41
Alignment explanation
Indices: 14909976--14910107 Score: 151
Period size: 41 Copynumber: 3.2 Consensus size: 41
14909966 GAAAATCGCA
* * *
14909976 TTGCGATTATGTATTATCTCGTTGCGAAAGTCAGTATTGAG
1 TTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGTATCGAG
** * * *
14910017 TTGCGAAATT-AAGTATCGAGTTGCGAAAGTCAGTATCGAG
1 TTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGTATCGAG
* *
14910057 TTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT-TCCGCG
1 TTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGTAT-CGAG
14910098 TTGCGATTTT
1 TTGCGATTTT
14910108 CCAAATTCGC
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 34 0.46
41 40 0.54
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (41 bp):
TTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGTATCGAG
Found at i:14910124 original size:21 final size:21
Alignment explanation
Indices: 14910098--14910206 Score: 134
Period size: 21 Copynumber: 5.3 Consensus size: 21
14910088 CAGTTCCGCG
14910098 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
14910119 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
** *
14910140 TTGCGATAGT-C-AGTATCGCA
1 TTGCGATTTTCCAAAT-TCGCA
14910160 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
* **
14910181 TTGCGA-TTTACTTATTCGCA
1 TTGCGATTTTCCAAATTCGCA
14910201 TTGCGA
1 TTGCGA
14910207 ATTGGGAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
19 2 0.03
20 31 0.41
21 41 0.54
22 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (21 bp):
TTGCGATTTTCCAAATTCGCA
Found at i:14910144 original size:62 final size:61
Alignment explanation
Indices: 14910073--14910206 Score: 198
Period size: 62 Copynumber: 2.2 Consensus size: 61
14910063 TTTTGTATTA
* * *
14910073 TCGCGTTGCGATAGTCAGT-TCCGCGTTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATAGTCAGTAT-CGCATTGCGATTTTCCAAATTCGCATTGCGA-TTTACAAAT
**
14910135 TCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTTAT
1 TCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACAAAT
14910196 TCGCATTGCGA
1 TCGCATTGCGA
14910207 ATTGGGAAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
61 17 0.26
62 48 0.73
63 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (61 bp):
TCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACAAAT
Found at i:14910200 original size:41 final size:39
Alignment explanation
Indices: 14910112--14910206 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 39
14910102 GATTTTCCAA
*
14910112 ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATAGTC
1 ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATACTC
*
14910151 AGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTT
1 A-T-TCGCATTGCGATTTTCCAAATTCGCATTGCGA--TACTC
14910194 ATTCGCATTGCGA
1 ATTCGCATTGCGA
14910207 ATTGGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
39 1 0.02
40 1 0.02
41 43 0.86
42 1 0.02
43 4 0.08
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (39 bp):
ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATACTC
Found at i:14910220 original size:62 final size:62
Alignment explanation
Indices: 14910098--14910221 Score: 160
Period size: 62 Copynumber: 2.0 Consensus size: 62
14910088 CAGTTCCGCG
* * **
14910098 TTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAATTCGCATTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCGATAGGCAAAATCGCA
** * *
14910160 TTGCGATTTTCCAAATTCGCATTGCGA-TTTACTTATTCGCATTGCGAATTGGGAAAATCGCA
1 TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCG-ATAGGCAAAATCGCA
14910222 ACGCGAAATT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 16 0.30
62 37 0.70
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (62 bp):
TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCGATAGGCAAAATCGCA
Found at i:14910248 original size:21 final size:22
Alignment explanation
Indices: 14910196--14910248 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
14910186 ATTTACTTAT
14910196 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
14910217 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
14910238 TCGCATTGCGA
1 TCGCATTGCGA
14910249 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:14910575 original size:2 final size:2
Alignment explanation
Indices: 14910568--14910601 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14910558 GAGACGTTAC
14910568 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14910602 TCTCTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14911565 original size:23 final size:23
Alignment explanation
Indices: 14911535--14911585 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
14911525 TTTAATAACG
14911535 ACTCAACAAAATAATACACTATA
1 ACTCAACAAAATAATACACTATA
14911558 ACTCAACAAAATAATACACTATA
1 ACTCAACAAAATAATACACTATA
*
14911581 GCTCA
1 ACTCA
14911586 GTTGGTAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.22
Consensus pattern (23 bp):
ACTCAACAAAATAATACACTATA
Found at i:14931986 original size:37 final size:37
Alignment explanation
Indices: 14931945--14932019 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
14931935 TGCCAGCTGG
14931945 CATTACATTCATAACAGTTATAAAAAACTGATCCTAT
1 CATTACATTCATAACAGTTATAAAAAACTGATCCTAT
*
14931982 CATTACATTCATAACAGTTATAACAAACTGATCCTAT
1 CATTACATTCATAACAGTTATAAAAAACTGATCCTAT
14932019 C
1 C
14932020 TTTTTCTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.32
Consensus pattern (37 bp):
CATTACATTCATAACAGTTATAAAAAACTGATCCTAT
Found at i:14936606 original size:43 final size:43
Alignment explanation
Indices: 14936535--14936619 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
14936525 CAATATGTTC
*
14936535 TACGATCCTATTTTTTTCCGTTGATTCTTTCGTTTAACTGTTAA
1 TACGATCCTATTTTTTT-CGTTGATTCTTTCCTTTAACTGTTAA
14936579 TACGATCCTATTTTTGTT-GTTGATTCTTTCCTTTAACTGTT
1 TACGATCCTATTTTT-TTCGTTGATTCTTTCCTTTAACTGTT
14936620 TCAGTGTCGT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 22 0.56
44 15 0.38
45 2 0.05
ACGTcount: A:0.16, C:0.18, G:0.12, T:0.54
Consensus pattern (43 bp):
TACGATCCTATTTTTTTCGTTGATTCTTTCCTTTAACTGTTAA
Found at i:14983097 original size:20 final size:20
Alignment explanation
Indices: 14983068--14983107 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14983058 GATAGCGATG
14983068 TTTTACAGCAAACAAAGTTA
1 TTTTACAGCAAACAAAGTTA
* *
14983088 TTTTAGAGCATACAAAGTTA
1 TTTTACAGCAAACAAAGTTA
14983108 ACCCACCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (20 bp):
TTTTACAGCAAACAAAGTTA
Found at i:14987582 original size:13 final size:13
Alignment explanation
Indices: 14987549--14987583 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
14987539 ACCTTAAACC
*
14987549 TTAACTTAGGGTT
1 TTAATTTAGGGTT
14987562 TATAATTTAGGGTT
1 T-TAATTTAGGGTT
14987576 TTAATTTA
1 TTAATTTA
14987584 AGAGTAGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.51
Consensus pattern (13 bp):
TTAATTTAGGGTT
Found at i:14990223 original size:31 final size:32
Alignment explanation
Indices: 14990152--14990275 Score: 112
Period size: 31 Copynumber: 3.9 Consensus size: 32
14990142 AGTCGAGGGT
*
14990152 TTACCTATGTTCTACGGGACATATGGATAGAA
1 TTACCTATGTTCTACGGGACATATGGACAGAA
* *
14990184 TTACCTATG-TCTTTCGGGACATATGGACAGTA
1 TTACCTATGTTC-TACGGGACATATGGACAGAA
** * *
14990216 -TACCTATGTTCTAAAGAACATATGGACA-AT
1 TTACCTATGTTCTACGGGACATATGGACAGAA
* * *
14990246 TTACCTAGGTTCTTCAGGATC-TATGGACAG
1 TTACCTATGTTCTACGGGA-CATATGGACAG
14990276 TTGCCGAGGT
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
31 45 0.61
32 29 0.39
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (32 bp):
TTACCTATGTTCTACGGGACATATGGACAGAA
Found at i:14993283 original size:32 final size:32
Alignment explanation
Indices: 14993242--14993378 Score: 197
Period size: 32 Copynumber: 4.3 Consensus size: 32
14993232 GAGTCGAGGT
*
14993242 TTACCTATGT-TCTACGGGACATATGGACAAAA
1 TTACCTATGTCT-TTCGGGACATATGGACAAAA
* *
14993274 TTACCTATGTCTTTCAGGACATATGGACAGAA
1 TTACCTATGTCTTTCGGGACATATGGACAAAA
* *
14993306 TTACCTATGTCTTTTGGGACATATGGACATAA
1 TTACCTATGTCTTTCGGGACATATGGACAAAA
*
14993338 TTACCTATGTCTTTCGGGACATATGGACAATA
1 TTACCTATGTCTTTCGGGACATATGGACAAAA
14993370 TT-CCTATGT
1 TTACCTATGT
14993379 TCTAAGGAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
31 7 0.07
32 87 0.92
33 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (32 bp):
TTACCTATGTCTTTCGGGACATATGGACAAAA
Found at i:14993430 original size:31 final size:31
Alignment explanation
Indices: 14993240--14993431 Score: 151
Period size: 32 Copynumber: 6.1 Consensus size: 31
14993230 AAGAGTCGAG
*
14993240 GTTTACCTATGT-TCTACGGGACATATGGACAA
1 GTTTACCTATGTCT-TTCGGGACATATGGAC-A
** *
14993272 AATTACCTATGTCTTTCAGGACATATGGACA
1 GTTTACCTATGTCTTTCGGGACATATGGACA
* *
14993303 GAATTACCTATGTCTTTTGGGACATATGGACA
1 G-TTTACCTATGTCTTTCGGGACATATGGACA
14993335 -TAATTACCTATGTCTTTCGGGACATATGGACA
1 GT--TTACCTATGTCTTTCGGGACATATGGACA
* ** * * *
14993367 ATATT-CCTATGT-TCTAAGGAATATATGAACA
1 GT-TTACCTATGTCT-TTCGGGACATATGGACA
* *
14993398 GTTTACCTAGGT-TCTTCGGGACCTATGGACA
1 GTTTACCTATGTCT-TTCGGGACATATGGACA
14993429 GTT
1 GTT
14993432 GTCGAGGTTC
Statistics
Matches: 131, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
30 3 0.02
31 43 0.33
32 83 0.63
33 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTCTTTCGGGACATATGGACA
Found at i:14994212 original size:12 final size:12
Alignment explanation
Indices: 14994164--14994214 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
14994154 GAAATTTTTC
* *
14994164 ACTGTTCATGGC
1 ACTGTTCACGGT
14994176 ACTGTTCACGGT
1 ACTGTTCACGGT
* *
14994188 ATTGTTCA--TT
1 ACTGTTCACGGT
14994198 ACTGTTCACGGT
1 ACTGTTCACGGT
14994210 ACTGT
1 ACTGT
14994215 ACATACCATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 8 0.26
12 23 0.74
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (12 bp):
ACTGTTCACGGT
Found at i:15001493 original size:20 final size:20
Alignment explanation
Indices: 15001468--15001506 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15001458 CGATACTTAG
15001468 CCTCTGAGTATTAGTACTAA
1 CCTCTGAGTATTAGTACTAA
* *
15001488 CCTCTGGGTATTGGTACTA
1 CCTCTGAGTATTAGTACTA
15001507 TTGACTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (20 bp):
CCTCTGAGTATTAGTACTAA
Found at i:15002899 original size:16 final size:16
Alignment explanation
Indices: 15002880--15002922 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
15002870 AGTATTTCAA
*
15002880 ATAAAAAGTACCAAAC
1 ATAAAAAATACCAAAC
*
15002896 ATAAAAAAATATCAAAC
1 AT-AAAAAATACCAAAC
*
15002913 ATAAATAATA
1 ATAAAAAATA
15002923 ATATGAAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (16 bp):
ATAAAAAATACCAAAC
Found at i:15003850 original size:3 final size:3
Alignment explanation
Indices: 15003842--15003901 Score: 88
Period size: 3 Copynumber: 20.0 Consensus size: 3
15003832 AAGTTTTAAT
15003842 TTA TTA TTAA CTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15003889 TTA -TA TT- TTA TTA
1 TTA TTA TTA TTA TTA
15003902 ATAATATTCT
Statistics
Matches: 53, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.08
3 45 0.85
4 2 0.04
5 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:15004449 original size:13 final size:14
Alignment explanation
Indices: 15004431--15004467 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
15004421 GGAAAATTGG
15004431 AGAAAAAACC-AAA
1 AGAAAAAACCAAAA
15004444 AGAAAAAACCAAAAA
1 AGAAAAAACC-AAAA
15004459 AGAAAAAAC
1 AGAAAAAAC
15004468 TCGAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.45
15 12 0.55
ACGTcount: A:0.78, C:0.14, G:0.08, T:0.00
Consensus pattern (14 bp):
AGAAAAAACCAAAA
Found at i:15011028 original size:15 final size:15
Alignment explanation
Indices: 15011010--15011038 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15011000 TTCTTATTTT
15011010 TCATTTTTTCCTTTA
1 TCATTTTTTCCTTTA
15011025 TCATTTTTTCCTTT
1 TCATTTTTTCCTTT
15011039 TTATTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (15 bp):
TCATTTTTTCCTTTA
Found at i:15011048 original size:15 final size:14
Alignment explanation
Indices: 15011006--15011049 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
15010996 ATTTTTCTTA
15011006 TTTTTCATTTTTTCC
1 TTTTT-ATTTTTTCC
*
15011021 TTTATCATTTTTTCC
1 TTT-TTATTTTTTCC
15011036 TTTTTATTCTTTTC
1 TTTTTATT-TTTTC
15011050 TCTTATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 4 0.16
15 20 0.80
16 1 0.04
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTATTTTTTCC
Found at i:15011447 original size:88 final size:88
Alignment explanation
Indices: 15011293--15011481 Score: 216
Period size: 88 Copynumber: 2.1 Consensus size: 88
15011283 GTGATGCTGA
* * * * * **
15011293 CCTTATCTGATGGCATCAAGCGAAAAGTGAATGTTAATCCACCTCCTTTTGTGATGGAATCAAAC
1 CCTTATGTGATGGCATCAAGCGAAAAGAGAATATTAATCCACCTCATTATGTGATAAAATCAAAC
* * *
15011358 AAAAGGATTATGTTGATCCAACT
66 AAAAAGATGATGTCGATCCAACT
** * * *
15011381 CCTTATGTGATGGCATTGATCGAAAAGAGAATATTGATCCACCTCATTATGTGATAAAATCGAAC
1 CCTTATGTGATGGCATCAAGCGAAAAGAGAATATTAATCCACCTCATTATGTGATAAAATCAAAC
* *
15011446 AAAAAGATGATGTCGTTCTAACT
66 AAAAAGATGATGTCGATCCAACT
*
15011469 CCTTGTGTGATGG
1 CCTTATGTGATGG
15011482 AAGAGCCAAG
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
88 83 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (88 bp):
CCTTATGTGATGGCATCAAGCGAAAAGAGAATATTAATCCACCTCATTATGTGATAAAATCAAAC
AAAAAGATGATGTCGATCCAACT
Found at i:15011615 original size:116 final size:116
Alignment explanation
Indices: 15011465--15011925 Score: 548
Period size: 116 Copynumber: 4.0 Consensus size: 116
15011455 ATGTCGTTCT
* * * *
15011465 AACTCCTTGTGTGATGGAAGAGCCAAGGTTGAACAAGTT-TGTCTAATTAGGAACTTCTTCTCCC
1 AACTCCTTTTGTGATGGACGAACCAAGGTTGAACAAGTTCT-TCTCATTAGGAACTTCTTCTCCC
* ** *
15011529 TCTTCAAACGAGTTCTTCTCATTATGAACCCTTCCATTGGAAATATTGATCC
65 TCATCGGACGAGTTCTTCTAATTATGAACCCTTCCATTGGAAATATTGATCC
* ** *
15011581 AACTCCTTTTGTGATGGATGAATTAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTTCCCCCT
1 AACTCCTTTTGTGATGGACGAACCAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCT
* * ** *
15011646 CATCGGACGAGTTCTTCTAATTATAAACCCTTTCATTCAAAATGTTGATCC
66 CATCGGACGAGTTCTTCTAATTATGAACCCTTCCATTGGAAATATTGATCC
* * * * *
15011697 ACCT-CTTTCTGTGATAGACAAACCAAGGTTGAACAAGTTCTTCTTATTAGGAAATTCTTCTCCC
1 AACTCCTTT-TGTGATGGACGAACCAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTTCTCCC
* * * *
15011761 TCATCGTACGAGTTTTTCTAATTATGAACCCTTCCATTGGAAATGTTGATTC
65 TCATCGGACGAGTTCTTCTAATTATGAACCCTTCCATTGGAAATATTGATCC
* * * * * * *
15011813 ACCACATTATATGATGGACGAACCAAGTTTGAACAAGTTCTTCTCATTAGGAACTTCATCTCCCT
1 AACTCCTTTTGTGATGGACGAACCAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCT
* * * *
15011878 CATCGGATGAGTTCGTCTCATTATGAACCCTTCCATTAGAAATGATTG
66 CATCGGACGAGTTCTTCTAATTATGAACCCTTCCATTGGAAAT-ATTG
15011926 GTCTATATTC
Statistics
Matches: 292, Mismatches: 49, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
115 4 0.01
116 282 0.97
117 6 0.02
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (116 bp):
AACTCCTTTTGTGATGGACGAACCAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTTCTCCCT
CATCGGACGAGTTCTTCTAATTATGAACCCTTCCATTGGAAATATTGATCC
Found at i:15011909 original size:232 final size:232
Alignment explanation
Indices: 15011487--15011914 Score: 615
Period size: 232 Copynumber: 1.8 Consensus size: 232
15011477 GATGGAAGAG
* * *
15011487 CCAAGGTTGAACAAGTTTGTCTAATTAGGAACTTCTTCTCCCTCTTCAAACGAGTTCTTCTCATT
1 CCAAGGTTGAACAAGTTTGTCTAATTAGGAAATTCTTCTCCCTCATCAAACGAGTTCTTCTAATT
* * * * * **
15011552 ATGAACCCTTCCATTGGAAATATTGATCCAACTCCTTTTGTGATGGATGAATTAAGGTTGAACAA
66 ATGAACCCTTCCATTGGAAATATTGATCCAACACATTATATGATGGACGAACCAAGGTTGAACAA
* * *
15011617 GTTCTTCTCATTAGGAACTTCTTCCCCCTCATCGGACGAGTTCTTCTAATTATAAACCCTTTCAT
131 GTTCTTCTCATTAGGAACTTCATCCCCCTCATCGGACGAGTTCGTCTAATTATAAACCCTTCCAT
15011682 TCAAAATGTTGATCCACCTCTTTCTGTGATAGACAAA
196 TCAAAATGTTGATCCACCTCTTTCTGTGATAGACAAA
* ** *
15011719 CCAAGGTTGAACAAGTTCT-TCTTATTAGGAAATTCTTCTCCCTCATCGTACGAGTTTTTCTAAT
1 CCAAGGTTGAACAAGTT-TGTCTAATTAGGAAATTCTTCTCCCTCATCAAACGAGTTCTTCTAAT
* * * *
15011783 TATGAACCCTTCCATTGGAAATGTTGATTCACCACATTATATGATGGACGAACCAAGTTTGAACA
65 TATGAACCCTTCCATTGGAAATATTGATCCAACACATTATATGATGGACGAACCAAGGTTGAACA
* * * *
15011848 AGTTCTTCTCATTAGGAACTTCATCTCCCTCATCGGATGAGTTCGTCTCATTATGAACCCTTCCA
130 AGTTCTTCTCATTAGGAACTTCATCCCCCTCATCGGACGAGTTCGTCTAATTATAAACCCTTCCA
15011913 TT
195 TT
15011915 AGAAATGATT
Statistics
Matches: 170, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
232 169 0.99
233 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (232 bp):
CCAAGGTTGAACAAGTTTGTCTAATTAGGAAATTCTTCTCCCTCATCAAACGAGTTCTTCTAATT
ATGAACCCTTCCATTGGAAATATTGATCCAACACATTATATGATGGACGAACCAAGGTTGAACAA
GTTCTTCTCATTAGGAACTTCATCCCCCTCATCGGACGAGTTCGTCTAATTATAAACCCTTCCAT
TCAAAATGTTGATCCACCTCTTTCTGTGATAGACAAA
Found at i:15012939 original size:44 final size:44
Alignment explanation
Indices: 15012876--15012977 Score: 195
Period size: 44 Copynumber: 2.3 Consensus size: 44
15012866 TTCGAGCAGC
*
15012876 CTTTTTAAGTTTTTGACTCGAACCTTCCTTTGGATTCAATACGT
1 CTTTTAAAGTTTTTGACTCGAACCTTCCTTTGGATTCAATACGT
15012920 CTTTTAAAGTTTTTGACTCGAACCTTCCTTTGGATTCAATACGT
1 CTTTTAAAGTTTTTGACTCGAACCTTCCTTTGGATTCAATACGT
15012964 CTTTTAAAGTTTTT
1 CTTTTAAAGTTTTT
15012978 CATTTTGAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.47
Consensus pattern (44 bp):
CTTTTAAAGTTTTTGACTCGAACCTTCCTTTGGATTCAATACGT
Found at i:15017990 original size:16 final size:15
Alignment explanation
Indices: 15017949--15018004 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
15017939 TAAAATAGAT
15017949 AAAAGAAAGAAAAA-A
1 AAAAGAAA-AAAAAGA
* *
15017964 ATAAGAGAAAAAAGA
1 AAAAGAAAAAAAAGA
*
15017979 AGGAAGAAAAAAAAGA
1 A-AAAGAAAAAAAAGA
15017995 AAAAGAAAAA
1 AAAAGAAAAA
15018005 GAAAATTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 5 0.15
15 16 0.47
16 13 0.38
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (15 bp):
AAAAGAAAAAAAAGA
Found at i:15018003 original size:12 final size:11
Alignment explanation
Indices: 15017949--15018009 Score: 59
Period size: 12 Copynumber: 5.2 Consensus size: 11
15017939 TAAAATAGAT
*
15017949 AAAAGAAAGAA
1 AAAAAAAAGAA
15017960 AAAAATAAGAGAA
1 AAAAA-AA-AGAA
* *
15017973 AAAAGAAGGAA
1 AAAAAAAAGAA
15017984 GAAAAAAAAGAA
1 -AAAAAAAAGAA
15017996 AAAGAAAAAGAA
1 AAA-AAAAAGAA
15018008 AA
1 AA
15018010 TTACTTCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
11 10 0.24
12 23 0.56
13 8 0.20
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:15019639 original size:20 final size:19
Alignment explanation
Indices: 15019577--15019640 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
15019567 AAATTAAAGG
15019577 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* **
15019596 CGTCTGATGAGGGAGAAGAA--
1 -GT-TCAT-AATGAGAAGAACT
15019616 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
15019636 GTTCA
1 GTTCA
15019641 ACCTTTGGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 9 0.27
18 3 0.09
19 2 0.06
20 7 0.21
21 3 0.09
22 9 0.27
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.25
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:15020430 original size:206 final size:204
Alignment explanation
Indices: 15019980--15020779 Score: 1037
Period size: 204 Copynumber: 3.9 Consensus size: 204
15019970 TTTTTATTCC
** * * * * *
15019980 ATCAACATTTCCAATGGAAGGGTTCATAATGAGAAAAACTCGTGCAATAAGGGAGAAGAAGTTTA
1 ATCAACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCA
* * * * *
15020045 TAATAAGAAGAACTTGTTCAACCTTAGCTC-ATTTTCATCACATAAAGAGCTGGAACAGCATCAA
66 TAATGAGAAGAACTTGTTCAACCTTAGCTCGA-TTCCATCACATAAAGAGTTGGAACAACACCAA
* ** ** * *
15020109 TACTTGGCTCATCTATCAAATATGGAGTTAAATCAGCATCATCACTTTGTTCGATTCCATTACAG
130 TACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCACTTTGTTCGATTCCATCACAG
15020174 AAGGAGGTGG
195 AAGGAGGTGG
* * * * * * * *
15020184 ATTAACATTTCTAGTGTAAAAGTTCATAATAAGAAGAACTCGTCCGATGAGGGAGAAGAGGTTCA
1 ATCAACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCA
*
15020249 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGATCAACACCAAT
66 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAACAACACCAAT
* * *
15020314 ACTTGGCTCATCCATCGCATATATGGAGTTGGATCAGCATCATCATTTTGTTCGATTCCATCGCA
131 ACTTGGCTCATCCATCGC--ATATGGAGTTGGATCAACATCATCACTTTGTTCGATTCCATCACA
* *
15020379 GAAGGAGATTG
194 GAAGGAGGTGG
* * ** *
15020390 ATCATCATTTCCAATGAAAAAGTTCATAATGAGAAGAACTCATCTGATGAGGAAGAAGAAGTTCA
1 ATCAACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCA
* ** *
15020455 TATTGAGAAGAACTTGTTCAACCTTAGCTTAATTCCATCACATAAAGAGTTGGAA-AAGTACCAA
66 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAACAA-CACCAA
* * * * *
15020519 TACTTGTCTCATCCATCGCATATGGAGTTGGATAAATATCGTCACTTTGTTCGATTTCATCACAG
130 TACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCACTTTGTTCGATTCCATCACAG
*
15020584 AAAGAGGTGG
195 AAGGAGGTGG
* * * * *
15020594 ATCCACATTTCCAATGGGAGAGTTCATAATGAGAAGAACACATCCAATGAGGGAGAAAAAGTTCA
1 ATCAACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCA
* *
15020659 TAATGAGAAGAACTTGTCCAACCTTAGCTCGATTCCATCACATAAGGAGTTGGAACAACACCAAT
66 TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAACAACACCAAT
* *
15020724 ACTTGGCTCATCCATCGCATATGGAGTTGGATCAAAATCATTACTTTGTTCGATTC
131 ACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCACTTTGTTCGATTC
15020780 TATAACATAA
Statistics
Matches: 514, Mismatches: 77, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
204 331 0.64
205 5 0.01
206 178 0.35
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (204 bp):
ATCAACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAACAACACCAAT
ACTTGGCTCATCCATCGCATATGGAGTTGGATCAACATCATCACTTTGTTCGATTCCATCACAGA
AGGAGGTGG
Found at i:15020641 original size:33 final size:35
Alignment explanation
Indices: 15020603--15020671 Score: 88
Period size: 39 Copynumber: 1.9 Consensus size: 35
15020593 GATCCACATT
15020603 TCCAAT-GGGAG-AGTTCATAATGAGAAGAACACA
1 TCCAATAGGGAGAAGTTCATAATGAGAAGAACACA
15020636 TCCAATGAGGGAGAAAAAGTTCATAATGAGAAGAAC
1 TCCAAT-AGGGAG---AAGTTCATAATGAGAAGAAC
15020672 TTGTCCAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
33 6 0.20
35 5 0.17
39 19 0.63
ACGTcount: A:0.45, C:0.13, G:0.25, T:0.17
Consensus pattern (35 bp):
TCCAATAGGGAGAAGTTCATAATGAGAAGAACACA
Found at i:15020745 original size:410 final size:408
Alignment explanation
Indices: 15019980--15020779 Score: 1098
Period size: 410 Copynumber: 2.0 Consensus size: 408
15019970 TTTTTATTCC
* ** * * *
15019980 ATCAACATTTCCAATGGAAGGGTTCATAATGAGAAAAACTCGTGCAATAAGGGAGAAGAAGTTTA
1 ATCAACATTTCCAATGAAAAAGTTCATAATGAGAAAAACTCATGCAATAAGGAAGAAGAAGTTCA
* * * *
15020045 TAATAAGAAGAACTTGTTCAACCTTAGCTCATTTTCATCACATAAAGAGCTGGAACAGCATCAAT
66 TAATAAGAAGAACTTGTTCAACCTTAGCTCAATTCCATCACATAAAGAGCTGGAAAAGCACCAAT
* * * *
15020110 ACTTGGCTCATCTATCAAATATGGAGTTAAATCAGCATCATCACTTTGTTCGATTCCATTACAGA
131 ACTTGGCTCATCCATCAAATATGGAGTTAAATAAACATCATCACTTTGTTCGATTCCATCACAGA
* * * * * * * *
15020175 AGGAGGTGGATTAACATTTCTAGTGTAAAAGTTCATAATAAGAAGAACTCGTCCGATGAGGGAGA
196 AAGAGGTGGATCAACATTTCCAATGGAAAAGTTCATAATAAGAAGAACACATCCAATGAGGGAGA
* * * *
15020240 AGAGGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGATC
261 AAAAGTTCATAATGAGAAGAACTTGTCCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAAC
** *
15020305 AACACCAATACTTGGCTCATCCATCGCATATATGGAGTTGGATCAGCATCATCATTTTGTTCGAT
326 AACACCAATACTTGGCTCATCCATCGC--ATATGGAGTTGGATCAAAATCATCACTTTGTTCGAT
15020370 TCCATCGCAGAAGGAGATTG
389 TCCATCGCAGAAGGAGATTG
* * * *
15020390 ATCATCATTTCCAATGAAAAAGTTCATAATGAGAAGAACTCAT-CTGATGAGGAAGAAGAAGTTC
1 ATCAACATTTCCAATGAAAAAGTTCATAATGAGAAAAACTCATGC-AATAAGGAAGAAGAAGTTC
* * * * *
15020454 ATATTGAGAAGAACTTGTTCAACCTTAGCTTAATTCCATCACATAAAGAGTTGGAAAAGTACCAA
65 ATAATAAGAAGAACTTGTTCAACCTTAGCTCAATTCCATCACATAAAGAGCTGGAAAAGCACCAA
* ** ** * * *
15020519 TACTTGTCTCATCCATCGCATATGGAGTTGGATAAATATCGTCACTTTGTTCGATTTCATCACAG
130 TACTTGGCTCATCCATCAAATATGGAGTTAAATAAACATCATCACTTTGTTCGATTCCATCACAG
* * * *
15020584 AAAGAGGTGGATCCACATTTCCAATGGGAGAGTTCATAATGAGAAGAACACATCCAATGAGGGAG
195 AAAGAGGTGGATCAACATTTCCAATGGAAAAGTTCATAATAAGAAGAACACATCCAATGAGGGAG
*
15020649 AAAAAGTTCATAATGAGAAGAACTTGTCCAACCTTAGCTCGATTCCATCACATAAGGAGTTGGAA
260 AAAAAGTTCATAATGAGAAGAACTTGTCCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAA
*
15020714 CAACACCAATACTTGGCTCATCCATCGCATATGGAGTTGGATCAAAATCATTACTTTGTTCGATT
325 CAACACCAATACTTGGCTCATCCATCGCATATGGAGTTGGATCAAAATCATCACTTTGTTCGATT
15020779 C
390 C
15020780 TATAACATAA
Statistics
Matches: 337, Mismatches: 52, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
408 34 0.10
409 1 0.00
410 302 0.90
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (408 bp):
ATCAACATTTCCAATGAAAAAGTTCATAATGAGAAAAACTCATGCAATAAGGAAGAAGAAGTTCA
TAATAAGAAGAACTTGTTCAACCTTAGCTCAATTCCATCACATAAAGAGCTGGAAAAGCACCAAT
ACTTGGCTCATCCATCAAATATGGAGTTAAATAAACATCATCACTTTGTTCGATTCCATCACAGA
AAGAGGTGGATCAACATTTCCAATGGAAAAGTTCATAATAAGAAGAACACATCCAATGAGGGAGA
AAAAGTTCATAATGAGAAGAACTTGTCCAACCTTAGCTCGATTCCATCACATAAAGAGTTGGAAC
AACACCAATACTTGGCTCATCCATCGCATATGGAGTTGGATCAAAATCATCACTTTGTTCGATTC
CATCGCAGAAGGAGATTG
Found at i:15026175 original size:23 final size:20
Alignment explanation
Indices: 15026104--15026203 Score: 96
Period size: 21 Copynumber: 4.8 Consensus size: 20
15026094 TTATGCACCA
15026104 TGTATCGATACCCCCTTGCT-AG
1 TGTATCGATA-CCCCTT--TAAG
*
15026126 -GTATCGATACCCCTTCAACG
1 TGTATCGATACCCCTTTAA-G
15026146 TGTATCGATACCCTCTTTGAATG
1 TGTATCGATACCC-CTTT-AA-G
*
15026169 TGTATCGATACCCCTATAAG
1 TGTATCGATACCCCTTTAAG
*
15026189 AGTATCGATACCCCT
1 TGTATCGATACCCCT
15026204 GTCGAGTTTA
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
19 1 0.01
20 22 0.32
21 23 0.34
22 6 0.09
23 16 0.24
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (20 bp):
TGTATCGATACCCCTTTAAG
Found at i:15026650 original size:19 final size:20
Alignment explanation
Indices: 15026617--15026660 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
15026607 ATTATTATGA
15026617 TTTTGTTTTTAAATT-GTTG
1 TTTTGTTTTTAAATTAGTTG
15026636 TTTTGTTATTT-AATTAAGTTG
1 TTTTGTT-TTTAAATT-AGTTG
15026657 TTTT
1 TTTT
15026661 CATGAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 3 0.14
21 8 0.36
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
TTTTGTTTTTAAATTAGTTG
Found at i:15055349 original size:137 final size:138
Alignment explanation
Indices: 15055086--15055333 Score: 310
Period size: 137 Copynumber: 1.8 Consensus size: 138
15055076 TGATCTAAAG
* * *
15055086 TGGAAGCTCTAATATTAACTTAAATTAATTTTAATCAATATTGCAATTCGAATAATTGAAGTGGA
1 TGGAAGCTATAATATTAACTTAAATTAATTTTAAACAATATTGCAATTCAAATAATTGAAGTGGA
* * *
15055151 ACCTCGAGCGAAAGCGATGACAAAATTAAGAGTTCTACTAATTTAAAGACTAAATACAAAATTAG
66 ACCTCGAGCAAAAGCGAAGACAAAATTAAGAATTCTACTAATTTAAAGACTAAATACAAAATTAG
15055216 GCCTAAGA
131 GCCTAAGA
* * * *
15055224 TGGAGGCTATAATATTAA-TTCTAATTAATTTTAAACAAT-TATGCGA-TCAAATAATT-AATTT
1 TGGAAGCTATAATATTAACTT-AAATTAATTTTAAACAATAT-TGCAATTCAAATAATTGAA-GT
*
15055285 GGAACCTCGAGCAAAAGC-AAGAACAAAGTTAAGAATTC-ACCTAATTTAA
63 GGAACCTCGAGCAAAAGCGAAG-ACAAAATTAAGAATTCTA-CTAATTTAA
15055334 GGACAAAACC
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
136 5 0.05
137 53 0.56
138 36 0.38
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (138 bp):
TGGAAGCTATAATATTAACTTAAATTAATTTTAAACAATATTGCAATTCAAATAATTGAAGTGGA
ACCTCGAGCAAAAGCGAAGACAAAATTAAGAATTCTACTAATTTAAAGACTAAATACAAAATTAG
GCCTAAGA
Found at i:15061118 original size:2 final size:2
Alignment explanation
Indices: 15061076--15061101 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15061066 GATTGATGAA
15061076 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
15061102 GGTTACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15061527 original size:16 final size:18
Alignment explanation
Indices: 15061503--15061545 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
15061493 TGTATGGTTC
*
15061503 ATTTCTAAT-CAAT-TAT
1 ATTTTTAATGCAATATAT
*
15061519 ATTTTTAATGCTATATAT
1 ATTTTTAATGCAATATAT
15061537 ATTTTTAAT
1 ATTTTTAAT
15061546 ATGAATATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 8 0.35
17 3 0.13
18 12 0.52
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTTTTAATGCAATATAT
Found at i:15062733 original size:19 final size:18
Alignment explanation
Indices: 15062711--15062746 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15062701 GATAAAGACA
15062711 TCAATCAATGATAATTTTC
1 TCAA-CAATGATAATTTTC
*
15062730 TCAACGATGATAATTTT
1 TCAACAATGATAATTTT
15062747 TTATTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (18 bp):
TCAACAATGATAATTTTC
Found at i:15084481 original size:20 final size:20
Alignment explanation
Indices: 15084456--15084497 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
15084446 ATATATATTC
15084456 AATTACATAGTGTATAACTT
1 AATTACATAGTGTATAACTT
**
15084476 AATTACATTTTGTATAACTT
1 AATTACATAGTGTATAACTT
15084496 AA
1 AA
15084498 ACAAGCTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (20 bp):
AATTACATAGTGTATAACTT
Found at i:15088246 original size:24 final size:24
Alignment explanation
Indices: 15088170--15088247 Score: 59
Period size: 24 Copynumber: 3.1 Consensus size: 24
15088160 TCAAAGATCA
* * *
15088170 TAAATTAAAATT-TTATATCAAGAT
1 TAAATTAAAATTAATATAT-TACAT
* * *
15088194 TAATTTAAAAATTATATACAATTATAT
1 TAAATT-AAAATTA-ATA-TATTACAT
15088221 TAAATTAAAATTAATATATTACAT
1 TAAATTAAAATTAATATATTACAT
15088245 TAA
1 TAA
15088248 CTAACAACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
24 14 0.33
25 9 0.21
26 7 0.17
27 10 0.24
28 2 0.05
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (24 bp):
TAAATTAAAATTAATATATTACAT
Found at i:15090391 original size:20 final size:20
Alignment explanation
Indices: 15090353--15090391 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15090343 ATGAAGAACA
*
15090353 AGTATCGATATTATCCCTAT
1 AGTATCGATATTATACCTAT
*
15090373 AGTATCGATATTTTACCTA
1 AGTATCGATATTATACCTA
15090392 CAAAAGCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
AGTATCGATATTATACCTAT
Found at i:15093698 original size:181 final size:181
Alignment explanation
Indices: 15093314--15093786 Score: 673
Period size: 181 Copynumber: 2.6 Consensus size: 181
15093304 GATCCAAATT
* * * *
15093314 AAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCAGTATTGAAATGATA
1 AAAAATGTATCGATCAACAACGATATAACA-GTAAAAATATGATAAAACCGGTATTAAAATGATA
* * * * * **
15093379 AAACCGGTAAAGCGGTATCGAATATATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
65 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
*
15093444 GTTAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTCA
130 GTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTCA
* * *
15093496 AAAAATATATCGATCAACAACGATATAACATGTAAAAATATGATAAAACTGGTATTAAAATGATG
1 AAAAATGTATCGATCAACAACGATATAACA-GTAAAAATATGATAAAACCGGTATTAAAATGATA
* * *
15093561 AAACCGGTAAAACGCTACCGGATATATTGAAAGTGTCGAAACTTT-ATATAAGGATCGACACTTT
65 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
*
15093625 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTT-A
130 GTGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTCA
*
15093676 AAAAATGTATCGATCAAACAACGATATAACAGCTAAAAATATGATAAAACCGGTATCAAAATGAT
1 AAAAATGTATCGATC-AACAACGATATAACAG-TAAAAATATGATAAAACCGGTATTAAAATGAT
* * *
15093741 AAAACCTGTAAAATGATACTGGATATATTAAAAGTGTC-AATACTTT
64 AAAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAA-ACTTT
15093787 CGTAAGTACA
Statistics
Matches: 261, Mismatches: 27, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
180 18 0.07
181 148 0.57
182 95 0.36
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.27
Consensus pattern (181 bp):
AAAAATGTATCGATCAACAACGATATAACAGTAAAAATATGATAAAACCGGTATTAAAATGATAA
AACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTCG
TGAATTTAAAAGAGAAGCAGTTTTAACGCCTATAAAGTGTCGATACTTTCA
Found at i:15096041 original size:19 final size:20
Alignment explanation
Indices: 15095998--15096041 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
15095988 GACAATCAAT
15095998 AGTCGAAGAGAAACTTGATAG
1 AGTCGAAGAGAAACTTGA-AG
* *
15096019 AGTCGAAGATACACTTG-AG
1 AGTCGAAGAGAAACTTGAAG
15096038 AGTC
1 AGTC
15096042 ATAAGGGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
21 15 0.71
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (20 bp):
AGTCGAAGAGAAACTTGAAG
Found at i:15096115 original size:33 final size:33
Alignment explanation
Indices: 15096073--15096138 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
15096063 AAATAGATGG
*
15096073 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTCAGGGGTGA
15096106 AGTGGTGAAAGAAGTTGAGGTGTTCAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTCAGGGGTGA
15096139 TCTTAAGATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.02, G:0.47, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTTGAGGTGTTCAGGGGTGA
Found at i:15096364 original size:33 final size:33
Alignment explanation
Indices: 15096326--15096412 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
15096316 AAAATATGAA
15096326 GAAGAAAAGAGGGAGGAGGAACAAGAAGAGATG
1 GAAGAAAAGAGGGAGGAGGAACAAGAAGAGATG
* *
15096359 GAAGAAAAGAGGGAGAAGGAAGAAGAAGAGATG
1 GAAGAAAAGAGGGAGGAGGAACAAGAAGAGATG
*
15096392 GAAGAAATGA-GGAGGAAGGAA
1 GAAGAAAAGAGGGAGG-AGGAA
15096413 GTCGATGTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 4 0.08
33 45 0.92
ACGTcount: A:0.53, C:0.01, G:0.43, T:0.03
Consensus pattern (33 bp):
GAAGAAAAGAGGGAGGAGGAACAAGAAGAGATG
Found at i:15096394 original size:15 final size:15
Alignment explanation
Indices: 15096343--15096397 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
15096333 AGAGGGAGGA
*
15096343 GGAACAAGAAGAGAT
1 GGAAGAAGAAGAGAT
* *
15096358 GGAAGAAAAGAGGGAGAA
1 GGAAG--AAGA-AGAGAT
15096376 GGAAGAAGAAGAGAT
1 GGAAGAAGAAGAGAT
15096391 GGAAGAA
1 GGAAGAA
15096398 ATGAGGAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 15 0.47
16 4 0.12
17 4 0.12
18 9 0.28
ACGTcount: A:0.55, C:0.02, G:0.40, T:0.04
Consensus pattern (15 bp):
GGAAGAAGAAGAGAT
Found at i:15097988 original size:19 final size:19
Alignment explanation
Indices: 15097964--15098011 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
15097954 AATGTAGGGT
15097964 TAATTTTGTATTA-GATTTA
1 TAATTTTGTATTACGA-TTA
15097983 TAATTTTGTA-TACGATTA
1 TAATTTTGTATTACGATTA
15098001 TAATTTTGTAT
1 TAATTTTGTAT
15098012 GTGAATGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATTACGATTA
Found at i:15098741 original size:200 final size:200
Alignment explanation
Indices: 15098238--15098822 Score: 1071
Period size: 200 Copynumber: 2.9 Consensus size: 200
15098228 TACAATATGA
15098238 CAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
1 CAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
*
15098303 ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATTA
66 ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATGA
*
15098368 GAAAATAGGTGTAATATATGTATCGACACTTTTTTAATTTTGTGTCGATACTATTGGTCCAGAAT
131 GAGAATAGGTGTAATATATGTATCGACAC-TTTTTAATTTTGTGTCGATACTATTGGTCCAGAAT
15098433 GAATGG
195 GAATGG
*
15098439 CAAACAGTGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
1 CAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
* *
15098504 ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACTGGTATAAGTATACCGGATTTATGA
66 ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATGA
* *
15098569 GAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTTGATATTATTGGTCCAGAATG
131 GAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAGAATG
15098634 AATGG
196 AATGG
*
15098639 CAAACAGGGTGCAACCATAAAGTGTCAATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
1 CAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
*
15098704 ACCCATAAATATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATGA
66 ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATGA
*
15098769 GAGAATAGGTGTAATATATATATCGACACTTTTTAATTTTGTGTCGATACTATT
131 GAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATT
15098823 TTTAAATATC
Statistics
Matches: 369, Mismatches: 15, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
200 215 0.58
201 154 0.42
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
CAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACATCGAA
ACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCAGATTTATGA
GAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAGAATG
AATGG
Found at i:15100365 original size:18 final size:18
Alignment explanation
Indices: 15100321--15100366 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
15100311 CAAGCGGTCA
15100321 ATGAAGATGAAGATGACG
1 ATGAAGATGAAGATGACG
* * *
15100339 GTGAAGATGACGATGATG
1 ATGAAGATGAAGATGACG
*
15100357 ATGATGATGA
1 ATGAAGATGA
15100367 TGATCCAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.35, T:0.22
Consensus pattern (18 bp):
ATGAAGATGAAGATGACG
Found at i:15100370 original size:12 final size:12
Alignment explanation
Indices: 15100321--15100366 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
15100311 CAAGCGGTCA
*
15100321 ATGAAGATGAAG
1 ATGACGATGAAG
*
15100333 ATGACGGTGAAG
1 ATGACGATGAAG
*
15100345 ATGACGATGATG
1 ATGACGATGAAG
*
15100357 ATGATGATGA
1 ATGACGATGA
15100367 TGATCCAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.39, C:0.04, G:0.35, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:15105727 original size:543 final size:546
Alignment explanation
Indices: 15104681--15106054 Score: 2441
Period size: 543 Copynumber: 2.5 Consensus size: 546
15104671 TTTTACCTTT
*
15104681 TTTAAAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
15104746 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15104811 CGGTTATATTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAA-AAGAGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAA-TTAATAAGAGAA
*
15104875 GAAGTTATAGCGCCAATAAAGTCTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACA
194 GAAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACA
* *
15104940 GGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGAATATGTTGA
259 TGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGAATATGTTGA
*
15105005 AAGTGTCGATAATTTATTATAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGC
324 AAGTGTCGATAATTTATTATAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCAC
*
15105070 CAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGT
389 CAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGA
* *
15105135 CAAAACCGGTCTCGAAATAACAAAACAGGTAAAGCGCTACCGTTTATGTTGAAAGTGTCGATAAT
454 CAAAACCGGTCTCGAAATAACAAAACAGGTAAAACGCTACCGGTTATGTTGAAAGTGTCGATAAT
*
15105200 TTATTATACGTATCGACAC-TTTTGGAA
519 TTATTATAAGTATCGACACTTTTTGGAA
*
15105227 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCTAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
15105291 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15105356 TGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG-ACTTTTGGAATTAATAAGAGAAGA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAATTAATAAGAGAAGA
* *
15105420 AGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATG
196 AGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACATG
**
15105485 TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAA
261 TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGAATATGTTGAAA
*
15105550 GTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCACCA
326 GTGTCGATAATTTATTATAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCACCA
* *
15105615 ATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAATAATATGACA
391 ATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
* *
15105680 AAACCGGTCTTGAAATGACAAAACAGGTAAAACGCTACCGGTTATGTTGAAAGTGTCGATAATTT
456 AAACCGGTCTCGAAATAACAAAACAGGTAAAACGCTACCGGTTATGTTGAAAGTGTCGATAATTT
15105745 ATTATAAGTATCGACACTTTTTGGAA
521 ATTATAAGTATCGACACTTTTTGGAA
*
15105771 TTTAAAAGAGAAGAATTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * *
15105836 AACAATATAACAGGTAAAAATATGACAAAACCGTTCTCGAAATGACAAAACAAGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15105901 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAG
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAATTAATAAGAGAAG
*
15105966 AAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAATAATATAACAT
195 AAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACAT
*
15106031 GTAAAAATATGATAAAACCGGTCT
260 GTAAAAATATGACAAAACCGGTCT
15106055 ATAATTGACA
Statistics
Matches: 791, Mismatches: 32, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
542 4 0.01
543 344 0.43
544 21 0.03
545 301 0.38
546 13 0.02
547 108 0.14
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (546 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAATTAATAAGAGAAGA
AGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCATAACAATATAACATG
TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGAATATGTTGAAA
GTGTCGATAATTTATTATAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCACCA
ATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACA
AAACCGGTCTCGAAATAACAAAACAGGTAAAACGCTACCGGTTATGTTGAAAGTGTCGATAATTT
ATTATAAGTATCGACACTTTTTGGAA
Found at i:15106067 original size:182 final size:182
Alignment explanation
Indices: 15104681--15106054 Score: 2407
Period size: 182 Copynumber: 7.6 Consensus size: 182
15104671 TTTTACCTTT
*
15104681 TTTAAAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
15104746 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15104811 CGGTTATATTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
15104863 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTCTCGATATTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
15104928 AACAATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
** *
15104993 CGAATATGTTGAAAGTGTCGATAATTTATTATAAGTATCAACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
15105045 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
15105110 AACAATATAACAGGTAAAAATATGTCAAAACCGGTCTCGAAATAACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
15105175 CGTTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
15105227 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCTAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
15105291 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15105356 TGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
15105406 -TTAATAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
*
15105470 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
15105535 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
15105588 TTTAAAAGAGAAGAAGTTATAGCACCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * *
15105653 AACAATATAACAGGTAATAATATGACAAAACCGGTCTTGAAATGACAAAACAGGTAAAACGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
15105718 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACAC-TTTTGGAA
*
15105771 TTTAAAAGAGAAGAATTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
15105836 AACAATATAACAGGTAAAAATATGACAAAACCGTTCTCGAAATGACAAAACAAGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
15105901 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
15105953 -TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * *
15106017 TAATAATATAACATGTAAAAATATGATAAAACCGGTCT
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCT
15106055 ATAATTGACA
Statistics
Matches: 1135, Mismatches: 50, Indels: 14
0.95 0.04 0.01
Matches are distributed among these distances:
178 4 0.00
179 18 0.02
180 153 0.13
181 153 0.13
182 630 0.56
183 177 0.16
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
Found at i:15106307 original size:87 final size:87
Alignment explanation
Indices: 15106203--15106365 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
15106193 AAATAAGTCA
15106203 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTT
15106268 CCGGTTAAATACCTATTTTATT
66 CCGGTTAAATACCTATTTTATT
* * *
15106290 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTT
*
15106355 TCGGTTAAATA
66 CCGGTTAAATA
15106366 ATATAACATA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTT
CCGGTTAAATACCTATTTTATT
Found at i:15106337 original size:23 final size:23
Alignment explanation
Indices: 15106287--15106331 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15106277 TACCTATTTT
* *
15106287 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
15106310 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
15106332 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:15106753 original size:19 final size:20
Alignment explanation
Indices: 15106712--15106755 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15106702 ATTATGAAAG
15106712 ATTTTAATTTGATCATTAAT
1 ATTTTAATTTGATCATTAAT
* *
15106732 ATTTTAATTTTAT-ATTATT
1 ATTTTAATTTGATCATTAAT
15106751 ATTTT
1 ATTTT
15106756 CAGGTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTAATTTGATCATTAAT
Found at i:15107191 original size:4 final size:4
Alignment explanation
Indices: 15107184--15107217 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
15107174 GAAAAACAAA
15107184 AAAG AAAG AAAG AAAG AAAG AAAG AAAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG -AAAG AAAG A
15107218 GTAGATGTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:15113586 original size:65 final size:65
Alignment explanation
Indices: 15113456--15113615 Score: 186
Period size: 65 Copynumber: 2.5 Consensus size: 65
15113446 AATTAAATTG
* *
15113456 AACATAGAATGCATTTCATGCATCGATGCA-CATACCATGCATCGATGCACTGAGGATTTTATGA
1 AACATAGAATGCATTTGATGCATCGATGCACCATACCATGAATCGATGCACTGAGGATTTTATG-
15113520 A
65 A
* * * *
15113521 AACATTGAATGCATTTGATGCATCGATGCACCA-GCCATGAATCGATGCACTCTA-GCTATTT-T
1 AACATAGAATGCATTTGATGCATCGATGCACCATACCATGAATCGATGCACT-GAGGAT-TTTAT
15113583 GA
64 GA
*
15113585 AACATCA-AATGCACTTGATGCATCGATGCAC
1 AACAT-AGAATGCATTTGATGCATCGATGCAC
15113616 TCTTAGTGCA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
64 29 0.35
65 48 0.58
66 6 0.07
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (65 bp):
AACATAGAATGCATTTGATGCATCGATGCACCATACCATGAATCGATGCACTGAGGATTTTATGA
Found at i:15113862 original size:11 final size:11
Alignment explanation
Indices: 15113846--15113881 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
15113836 ACCAGAAACA
15113846 AGAATCAAGAG
1 AGAATCAAGAG
15113857 AGAATCAAGAG
1 AGAATCAAGAG
*
15113868 ATAATCAA-AG
1 AGAATCAAGAG
15113878 AGAA
1 AGAA
15113882 AGCATCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 5 0.22
11 18 0.78
ACGTcount: A:0.58, C:0.08, G:0.22, T:0.11
Consensus pattern (11 bp):
AGAATCAAGAG
Found at i:15117676 original size:237 final size:238
Alignment explanation
Indices: 15117391--15117867 Score: 899
Period size: 237 Copynumber: 2.0 Consensus size: 238
15117381 ATCAAAGGAA
15117391 AAACGAAAGATGAGGAAACTCAAGATCCTCGAGAATCCAACCATTGAAGAAAGGGAAGTATCTTA
1 AAACGAAAGATGAGGAAACTCAAGATCCTCGAGAATCCAACCATTGAAGAAAGGGAAGTATCTTA
15117456 CCCAAGAGAGTACAACTATGTCAAGGATGGTGAGATTATA-GTGATCCATCAGAAGGGGTAACAA
66 CCCAAGAGAGTACAACTATGTCAAGGATGGTGAGATTATAGGTGATCCATCAGAAGGGGTAACAA
15117520 CTCGATCTTCTCTTAAACATA-TTATAA-TATGTTGCATTTATCTCATGCATAAAGCCTAATAAT
131 CTCGATCTTCTCTTAAACATATTTATAATTATGTTGCATTTATCTCATGCATAAAGCCTAATAAT
15117583 A-TAAAGAAGCATTAAAAAGATGAACATTGGATTACGGCTATGC
196 ATTAAAGAAGCATT-AAAAGATGAACATTGGATTACGGCTATGC
15117626 AAACGAAAGATGAGGAAACTCAAGATCCTCTCGAGAATCCAACCATTGAAGAAAGGGAAGTATCT
1 AAACGAAAGATGAGGAAACTCAAGAT-C-CTCGAGAATCCAACCATTGAAGAAAGGGAAGTATCT
15117691 TACCCAAGAGAGTACAACTATGTCAAGGATGGTGAGATTATAGGTGATCCATCAGAAGGGGTAAC
64 TACCCAAGAGAGTACAACTATGTCAAGGATGGTGAGATTATAGGTGATCCATCAGAAGGGGTAAC
15117756 AACTCGATCTTCTCTTAAACATATTTATAATTATGTTGCATTTATCTCATGCATAAAGCCTAATA
129 AACTCGATCTTCTCTTAAACATATTTATAATTATGTTGCATTTATCTCATGCATAAAGCCTAATA
15117821 ATATTAAAGAAGCATTAAAAGATGAACATTGGATTACGGCTATGC
194 ATATTAAAGAAGCATTAAAAGATGAACATTGGATTACGGCTATGC
15117866 AA
1 AA
15117868 GAAGAGTTAA
Statistics
Matches: 236, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
235 26 0.11
236 1 0.00
237 78 0.33
238 45 0.19
239 6 0.03
240 68 0.29
241 12 0.05
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (238 bp):
AAACGAAAGATGAGGAAACTCAAGATCCTCGAGAATCCAACCATTGAAGAAAGGGAAGTATCTTA
CCCAAGAGAGTACAACTATGTCAAGGATGGTGAGATTATAGGTGATCCATCAGAAGGGGTAACAA
CTCGATCTTCTCTTAAACATATTTATAATTATGTTGCATTTATCTCATGCATAAAGCCTAATAAT
ATTAAAGAAGCATTAAAAGATGAACATTGGATTACGGCTATGC
Found at i:15121183 original size:64 final size:65
Alignment explanation
Indices: 15121059--15121183 Score: 164
Period size: 64 Copynumber: 1.9 Consensus size: 65
15121049 GAATGCATTT
* * * *
15121059 CATGCATCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTTGATGCGTCGATGCACCAGC
1 CATGCATCGATGCACTCAGGATTTTATGAAAACAACGAATGCACTTGATGCATCGATGCACCAGC
* * *
15121124 CATGCATCGATGCACTCTGGCTATTT-TG-AAACAACGAATGCACTTGATGCATCGTTGCAC
1 CATGCATCGATGCACTCAGGAT-TTTATGAAAACAACGAATGCACTTGATGCATCGATGCAC
15121184 TCTTAGTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
64 28 0.54
65 21 0.40
66 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (65 bp):
CATGCATCGATGCACTCAGGATTTTATGAAAACAACGAATGCACTTGATGCATCGATGCACCAGC
Found at i:15127769 original size:20 final size:20
Alignment explanation
Indices: 15127744--15127791 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
15127734 TCAAACAATC
**
15127744 CCGATTCAAACTGGGTTGGG
1 CCGATTCAAACCAGGTTGGG
15127764 CCGATTCAAACCAGGTTGGG
1 CCGATTCAAACCAGGTTGGG
15127784 CCGATTCA
1 CCGATTCA
15127792 GACCGGTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (20 bp):
CCGATTCAAACCAGGTTGGG
Found at i:15133734 original size:35 final size:36
Alignment explanation
Indices: 15133673--15133789 Score: 116
Period size: 35 Copynumber: 3.3 Consensus size: 36
15133663 GAAGTCTCTG
* * *
15133673 TAGGTTCAG-TTTTATCAAAC-GAGTAATTTCTTATA
1 TAGGTTCAGACTTGATCAAACTG-GTAATTCCTTATA
* *
15133708 TAGGTTCAGAC-TGATCGAACTGGTAATTCCTTACGA
1 TAGGTTCAGACTTGATCAAACTGGTAATTCCTTA-TA
* *
15133744 TAGGTTCA-ACTTGGTCAAATTGGTAATTCCTTATA
1 TAGGTTCAGACTTGATCAAACTGGTAATTCCTTATA
*
15133779 TAGGTTAAGAC
1 TAGGTTCAGAC
15133790 CAATCGAGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
35 36 0.54
36 31 0.46
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (36 bp):
TAGGTTCAGACTTGATCAAACTGGTAATTCCTTATA
Found at i:15133751 original size:36 final size:36
Alignment explanation
Indices: 15133707--15133813 Score: 110
Period size: 36 Copynumber: 3.0 Consensus size: 36
15133697 AATTTCTTAT
*
15133707 ATAGGTTCAGACTGATCGAACTGGTAATTCCTTACG
1 ATAGGTTCAGACTGATCGAATTGGTAATTCCTTACG
* * *
15133743 ATAGGTTCA-ACTTGGTCAAATTGGTAATTCCTTA-T
1 ATAGGTTCAGAC-TGATCGAATTGGTAATTCCTTACG
* ** * *
15133778 ATAGGTTAAGACCAATCGAGTTAGTAATTCCTTACG
1 ATAGGTTCAGACTGATCGAATTGGTAATTCCTTACG
15133814 GATCTAAGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
35 26 0.46
36 30 0.54
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (36 bp):
ATAGGTTCAGACTGATCGAATTGGTAATTCCTTACG
Found at i:15135222 original size:12 final size:13
Alignment explanation
Indices: 15135183--15135222 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
15135173 TCTCATTTAA
15135183 TATTTTT-GTATAT
1 TATTTTTAG-ATAT
15135196 TATTTTTAGATAT
1 TATTTTTAGATAT
15135209 TATTTTTAGA-AT
1 TATTTTTAGATAT
15135221 TA
1 TA
15135223 AGATGAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.15
13 21 0.81
14 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (13 bp):
TATTTTTAGATAT
Found at i:15136555 original size:4 final size:4
Alignment explanation
Indices: 15136546--15136652 Score: 106
Period size: 4 Copynumber: 26.2 Consensus size: 4
15136536 GAAGGTAGAT
* * * *
15136546 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGCA TGCA TGTG TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
15136594 AGTA TGTG TGTGCA TGTA TGTA TGTA TGTA TGTA TGCA TGCA TGCA TGTA
1 TGTA TGTA TGT--A TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
15136644 AGTA TGTA T
1 TGTA TGTA T
15136653 TGCTAACTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
4 86 0.97
6 3 0.03
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (4 bp):
TGTA
Found at i:15149420 original size:16 final size:16
Alignment explanation
Indices: 15149399--15149432 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15149389 GAGCTCATCT
*
15149399 CTTCTGTCACATTCAG
1 CTTCTGCCACATTCAG
*
15149415 CTTCTGCCCCATTCAG
1 CTTCTGCCACATTCAG
15149431 CT
1 CT
15149433 CCTGATCCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.38, G:0.12, T:0.35
Consensus pattern (16 bp):
CTTCTGCCACATTCAG
Found at i:15152988 original size:7 final size:7
Alignment explanation
Indices: 15152969--15153001 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
15152959 AACTACTTTG
15152969 ATATACGA
1 ATATAC-A
15152977 A-ATACA
1 ATATACA
15152983 ATATACA
1 ATATACA
15152990 ATATACA
1 ATATACA
15152997 ATATA
1 ATATA
15153002 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 2 0.08
7 21 0.88
8 1 0.04
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (7 bp):
ATATACA
Found at i:15153132 original size:30 final size:29
Alignment explanation
Indices: 15153098--15153204 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
15153088 TAACTTCACC
15153098 TCTTAATATTAAAAAATATATTTTATTTTT
1 TCTTAA-ATTAAAAAATATATTTTATTTTT
**
15153128 TCTTAAATTATTAAATATATTTTA--TTT
1 TCTTAAATTAAAAAATATATTTTATTTTT
* *
15153155 T-TTAACTT-AAAAATATATTTTAATCTTAT
1 TCTTAAATTAAAAAATATATTTT-AT-TTTT
* *
15153184 T-TTAACTTAAAATATATATTT
1 TCTTAAATTAAAAAATATATTT
15153205 ATTCTTATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
25 11 0.17
26 7 0.11
27 4 0.06
29 26 0.40
30 17 0.26
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (29 bp):
TCTTAAATTAAAAAATATATTTTATTTTT
Found at i:15153195 original size:29 final size:27
Alignment explanation
Indices: 15153109--15153217 Score: 107
Period size: 29 Copynumber: 3.9 Consensus size: 27
15153099 CTTAATATTA
* *
15153109 AAAAATATATTTTATTTTTTCTTAAATT
1 AAAAATATATTTTATTTATT-TTAACTT
*
15153137 ATTAAATATATTTTA-TT-TTTTAACTT
1 A-AAAATATATTTTATTTATTTTAACTT
15153163 AAAAATATATTTTAATCTTATTTTAACTT
1 AAAAATATATTTT-AT-TTATTTTAACTT
15153192 -AAAATATATATTTATTCTTATTTTAA
1 AAAAATATAT-TTTA-T-TTATTTTAA
15153218 TTTTTTAAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
25 11 0.15
26 8 0.11
27 2 0.03
28 15 0.21
29 35 0.49
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (27 bp):
AAAAATATATTTTATTTATTTTAACTT
Found at i:15153320 original size:29 final size:29
Alignment explanation
Indices: 15153276--15153382 Score: 135
Period size: 28 Copynumber: 3.7 Consensus size: 29
15153266 TAACTCATTG
*
15153276 AATATATTTTATTCTTATTTTAATTTAAA
1 AATATATTTTATTCTTATTTTAACTTAAA
*
15153305 AATATATTTTAGTCTTATTTTAACTT-AA
1 AATATATTTTATTCTTATTTTAACTTAAA
* * * *
15153333 AACATATTTTATTTTTATCTTAACTTATGA
1 AATATATTTTATTCTTATTTTAACTTA-AA
*
15153363 AATATATTTTATTTTTATTT
1 AATATATTTTATTCTTATTT
15153383 AAAATATATT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 24 0.36
29 24 0.36
30 19 0.28
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (29 bp):
AATATATTTTATTCTTATTTTAACTTAAA
Found at i:15153372 original size:30 final size:29
Alignment explanation
Indices: 15153276--15153384 Score: 123
Period size: 29 Copynumber: 3.8 Consensus size: 29
15153266 TAACTCATTG
* * *
15153276 AATATATTTTATTCTTATTTTAATTTAAA
1 AATATATTTTATTCTTATCTTAACTTAGA
* *
15153305 AATATATTTTAGTCTTATTTTAACTTA-A
1 AATATATTTTATTCTTATCTTAACTTAGA
* *
15153333 AACATATTTTATTTTTATCTTAACTTATGA
1 AATATATTTTATTCTTATCTTAACTTA-GA
*
15153363 AATATATTTTATTTTTAT-TTAA
1 AATATATTTTATTCTTATCTTAA
15153385 AATATATTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
28 24 0.34
29 29 0.41
30 18 0.25
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.57
Consensus pattern (29 bp):
AATATATTTTATTCTTATCTTAACTTAGA
Found at i:15153429 original size:24 final size:23
Alignment explanation
Indices: 15153402--15153493 Score: 76
Period size: 29 Copynumber: 3.6 Consensus size: 23
15153392 TTTTTAAAAA
*
15153402 TTAAGATAAGAATAATATATATTT
1 TTAAGTTAA-AATAATATATATTT
15153426 TTAAGTTAAAATATTAGTAAAATATATTT
1 TTAAGTTAAAATA--A-T---ATATATTT
*
15153455 TTAAGTTAAAATAAAATATATTT
1 TTAAGTTAAAATAATATATATTT
*
15153478 AATAAGTTAAGAATAA
1 -TTAAGTTAA-AATAA
15153494 AATAAAATAT
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
23 12 0.21
24 16 0.28
25 6 0.11
26 1 0.02
27 1 0.02
29 21 0.37
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (23 bp):
TTAAGTTAAAATAATATATATTT
Found at i:15153492 original size:25 final size:23
Alignment explanation
Indices: 15153443--15153497 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
15153433 AAAATATTAG
*
15153443 TAAAATATATTTTTAAGTTAAAA
1 TAAAATATATTTATAAGTTAAAA
15153466 TAAAATATATTTAATAAGTTAAGAA
1 TAAAATATATTT-ATAAGTTAA-AA
15153491 TAAAATA
1 TAAAATA
15153498 AAATATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 12 0.41
24 8 0.28
25 9 0.31
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (23 bp):
TAAAATATATTTATAAGTTAAAA
Found at i:15153500 original size:53 final size:54
Alignment explanation
Indices: 15153402--15153519 Score: 143
Period size: 53 Copynumber: 2.2 Consensus size: 54
15153392 TTTTTAAAAA
* * * * *
15153402 TTAAGATAAGAATAATATATATTTTTAAGTTAAAATATTAGTAAAATATA-TTT
1 TTAAGTTAAGAATAAAATATATTTATAAGTTAAAATATAAATAAAATATATTTT
15153455 TTAAGTTAA-AATAAAATATATTTAATAAGTTAAGAATA-AAATAAAATATATTTT
1 TTAAGTTAAGAATAAAATATATTT-ATAAGTTAA-AATATAAATAAAATATATTTT
15153509 TTAATGTTAAG
1 TTAA-GTTAAG
15153520 TTGTGAATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
52 13 0.24
53 26 0.47
54 11 0.20
55 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (54 bp):
TTAAGTTAAGAATAAAATATATTTATAAGTTAAAATATAAATAAAATATATTTT
Found at i:15154645 original size:41 final size:41
Alignment explanation
Indices: 15154590--15154678 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
15154580 TCTGTCCAGA
*
15154590 AAAT-GATCGATCCCTTTT-TAAATGAATCGATCCCTCAAGAG
1 AAATGGATCGATCCCTTTTCAAAATG-ATCGATCCCT-AAGAG
* *
15154631 AAA-GGATCGGTCCCTTTTCAAAATGATCGATCCCTTAGAG
1 AAATGGATCGATCCCTTTTCAAAATGATCGATCCCTAAGAG
15154671 AAATGGAT
1 AAATGGAT
15154679 TGACCCCTCG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 7 0.17
41 30 0.71
42 5 0.12
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (41 bp):
AAATGGATCGATCCCTTTTCAAAATGATCGATCCCTAAGAG
Found at i:15154664 original size:20 final size:19
Alignment explanation
Indices: 15154589--15154666 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 19
15154579 TTCTGTCCAG
15154589 AAAATGATCGATCCCTTTT
1 AAAATGATCGATCCCTTTT
* ***
15154608 TAAATGAATCGATCCCTCAAG
1 AAAATG-ATCGATCCCT-TTT
* *
15154629 AGAAAGGATCGGTCCCTTTT
1 A-AAATGATCGATCCCTTTT
15154649 CAAAATGATCGATCCCTT
1 -AAAATGATCGATCCCTT
15154667 AGAGAAATGG
Statistics
Matches: 43, Mismatches: 12, Indels: 7
0.69 0.19 0.11
Matches are distributed among these distances:
19 5 0.12
20 24 0.56
21 10 0.23
22 4 0.09
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (19 bp):
AAAATGATCGATCCCTTTT
Found at i:15154674 original size:20 final size:20
Alignment explanation
Indices: 15154590--15154705 Score: 65
Period size: 20 Copynumber: 5.7 Consensus size: 20
15154580 TCTGTCCAGA
***
15154590 AAATGATCGATCCCTT-TTT
1 AAATGATCGATCCCTTAGAG
*
15154609 AAATGAATCGATCCCTCAAGAG
1 AAATG-ATCGATCCCT-TAGAG
* * **
15154631 AAAGGATCGGTCCCTTTTCA-
1 AAATGATCGATCCC-TTAGAG
15154651 AAATGATCGATCCCTTAGAG
1 AAATGATCGATCCCTTAGAG
* * * *
15154671 AAATGGATTGACCCCTCGAAAG
1 AAAT-GATCGATCCCT-TAGAG
15154693 AAATGATCGATCC
1 AAATGATCGATCC
15154706 ATTCTCTATT
Statistics
Matches: 71, Mismatches: 19, Indels: 12
0.70 0.19 0.12
Matches are distributed among these distances:
19 8 0.11
20 26 0.37
21 25 0.35
22 12 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (20 bp):
AAATGATCGATCCCTTAGAG
Found at i:15157912 original size:107 final size:109
Alignment explanation
Indices: 15157756--15157981 Score: 334
Period size: 108 Copynumber: 2.1 Consensus size: 109
15157746 CATGACCAAA
* *
15157756 ATGCAAAAACACGTTAAACATAGAGGGACTAAGAAGTAAATAACCCTAAAAATATATAACATACA
1 ATGCAAAAACACGCTAAACATAGAGGGAATAAGAAGTAAATAACCCTAAAAATATATAACATACA
*
15157821 -CAAAATGGGTAAATAACAAGTTCGGTCCCTACAGGTGACTAAC
66 TAAAAATGGGTAAATAACAAGTTCGGTCCCTACAGGTGACTAAC
* *
15157864 ATGCAAAAACATGCTAAAC-TATG-GGGAATAA-ATAGTAAATAACCCTAAAAATATATAACATG
1 ATGCAAAAACACGCTAAACATA-GAGGGAATAAGA-AGTAAATAACCCTAAAAATATATAACATA
**
15157926 CATAAAAATGGGTAAATAGTAAGTTCGGTCCCTACAGGTGACTAAC
64 CATAAAAATGGGTAAATAACAAGTTCGGTCCCTACAGGTGACTAAC
*
15157972 ATGTAAAAAC
1 ATGCAAAAAC
15157982 GCACAAGAGT
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
106 1 0.01
107 39 0.36
108 67 0.63
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (109 bp):
ATGCAAAAACACGCTAAACATAGAGGGAATAAGAAGTAAATAACCCTAAAAATATATAACATACA
TAAAAATGGGTAAATAACAAGTTCGGTCCCTACAGGTGACTAAC
Found at i:15161202 original size:7 final size:7
Alignment explanation
Indices: 15161185--15161215 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
15161175 TTTTCCTTTA
15161185 ATTTATTT
1 ATTT-TTT
15161193 ATTTTTT
1 ATTTTTT
15161200 ATTTTTT
1 ATTTTTT
15161207 ATTTTTT
1 ATTTTTT
15161214 AT
1 AT
15161216 CTAATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (7 bp):
ATTTTTT
Found at i:15161209 original size:14 final size:15
Alignment explanation
Indices: 15161185--15161228 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
15161175 TTTTCCTTTA
15161185 ATTTATTTATTTTTT
1 ATTTATTTATTTTTT
15161200 ATTT-TTTATTTTTT
1 ATTTATTTATTTTTT
* *
15161214 ATCTA-ATATTTTTT
1 ATTTATTTATTTTTT
15161228 A
1 A
15161229 GGAATACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (15 bp):
ATTTATTTATTTTTT
Found at i:15165288 original size:110 final size:110
Alignment explanation
Indices: 15165101--15165574 Score: 711
Period size: 110 Copynumber: 4.3 Consensus size: 110
15165091 CTTTTCAGTT
*
15165101 TCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGACAACACAAGCTCAACTTCACAGCGAA
1 TCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAA
* *
15165166 AGGGCGACTGACTATCAACAAACAACTTTCCAGTTTTATTCAGAG
66 GGGGCGACTGACTATCAACAAACAACTTTCCAGTTTCATTCAGAG
* *
15165211 TCAATTTCAAATTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGTGAA
1 TCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAA
* *
15165276 GGGGCGATTGACTATCAACAAACAACTTTTCAGTTTCATTCAGAG
66 GGGGCGACTGACTATCAACAAACAACTTTCCAGTTTCATTCAGAG
* * *
15165321 TCAAATTCAACTTCA-AAGCAAAGGATATTAGACTCGAGACAACACAAGCTCAACTTCACAGCGA
1 TCAATTTCAACTTCACAA-CGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGA
* * * *
15165385 AGTGGCGACTGACTGTTAACAAATAACATTT-CAGTTTCATTCAGAG
65 AGGGGCGACTGACTATCAACAAACAAC-TTTCCAGTTTCATTCAGAG
*
15165431 TCAATTTCAAATTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAA
1 TCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAA
** * * *
15165496 GGGATGGCTGGCTGTCAACAAACAAC-TTCACAGTTTCATTCAGAG
66 GGGGCGACTGACTATCAACAAACAACTTTC-CAGTTTCATTCAGAG
*
15165541 CCAATTTCAACTTCACAACGAAGGATATTGGACT
1 TCAATTTCAACTTCACAACGAAGGATATTGGACT
15165575 TGAAATAATA
Statistics
Matches: 329, Mismatches: 30, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
108 2 0.01
109 2 0.01
110 320 0.97
111 5 0.02
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (110 bp):
TCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAA
GGGGCGACTGACTATCAACAAACAACTTTCCAGTTTCATTCAGAG
Found at i:15166225 original size:178 final size:179
Alignment explanation
Indices: 15166001--15166324 Score: 544
Period size: 179 Copynumber: 1.8 Consensus size: 179
15165991 TTCAGACTCA
* *
15166001 ATTTCAACTTCACGACGGAGGATATTGGACTCAAAACAATACAACTTAC-TTGGATTTCAACTTC
1 ATTTCAACTTCACGACGAAAGATATTGGACTCAAAACAATACAACTTACATTGGATTTCAACTTC
* *
15166065 ACGATGAAGGATATCCAATTCAAGGCTCAACTTCACGACGGAGGGGCCATCCACGGTTTCAACTT
66 ACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCACGGTTTCAACTT
15166130 CACGACGAAGGGAATCATGCACACAAGCATCATCCATCTCCAGATTTGG
131 CACGACGAAGGGAATCATGCACACAAGCATCATCCATCTCCAGATTTGG
* *
15166179 ATTTCAACTTCACGACGAAAGATATTGGACTCGAAAC-ATCACAACTTTCATTGGATTTCAACTT
1 ATTTCAACTTCACGACGAAAGATATTGGACTCAAAACAAT-ACAACTTACATTGGATTTCAACTT
* * *
15166243 CATGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGTGTCATCCACGGTTTCAACT
65 CACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCACGGTTTCAACT
15166308 TCACGACGAAGGGAATC
130 TCACGACGAAGGGAATC
15166325 GTGCCCACCA
Statistics
Matches: 135, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
177 2 0.01
178 42 0.31
179 91 0.67
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (179 bp):
ATTTCAACTTCACGACGAAAGATATTGGACTCAAAACAATACAACTTACATTGGATTTCAACTTC
ACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCACGGTTTCAACTT
CACGACGAAGGGAATCATGCACACAAGCATCATCCATCTCCAGATTTGG
Found at i:15166885 original size:22 final size:23
Alignment explanation
Indices: 15166855--15166901 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
15166845 ACAAAAAAAA
15166855 TTATATTATTATTATTATTATTT
1 TTATATTATTATTATTATTATTT
* *
15166878 TTAT-TTATTTTTATTTTTATTT
1 TTATATTATTATTATTATTATTT
15166900 TT
1 TT
15166902 GCACCCCACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (23 bp):
TTATATTATTATTATTATTATTT
Found at i:15166891 original size:16 final size:16
Alignment explanation
Indices: 15166854--15166899 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
15166844 TACAAAAAAA
*
15166854 ATTA-TATTATTA-TT
1 ATTATTATTTTTATTT
15166868 ATTATTATTTTTATTT
1 ATTATTATTTTTATTT
*
15166884 ATTTTTATTTTTATTT
1 ATTATTATTTTTATTT
15166900 TTGCACCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 4 0.14
15 7 0.25
16 17 0.61
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTATTATTTTTATTT
Found at i:15166899 original size:6 final size:6
Alignment explanation
Indices: 15166860--15166901 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
15166850 AAAAATTATA
* *
15166860 TTATTA TTATTA TTATTT TTA--T TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TT
15166902 GCACCCCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
4 4 0.12
6 29 0.88
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:15169503 original size:30 final size:30
Alignment explanation
Indices: 15169455--15169557 Score: 120
Period size: 30 Copynumber: 3.4 Consensus size: 30
15169445 AAACTTAGAA
*
15169455 GACTAAAATAGAAAAAAATCAGAAACTAAAG
1 GACTAAAATAG-AAAAAATCAGAAACTAAGG
15169486 GACTAAAATAGAAAAAATCA-AAACTTAAGG
1 GACTAAAATAGAAAAAATCAGAAAC-TAAGG
* * **
15169516 GATTAAAATAGCAAAAAT-AGATATTTAAGG
1 GACTAAAATAGAAAAAATCAGA-AACTAAGG
15169546 GACTAAAATAGA
1 GACTAAAATAGA
15169558 TATTATGAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.08
30 45 0.73
31 12 0.19
ACGTcount: A:0.59, C:0.08, G:0.15, T:0.18
Consensus pattern (30 bp):
GACTAAAATAGAAAAAATCAGAAACTAAGG
Found at i:15171603 original size:128 final size:128
Alignment explanation
Indices: 15171263--15171840 Score: 641
Period size: 128 Copynumber: 4.5 Consensus size: 128
15171253 TTTAGGAAAT
* * *
15171263 GTGATAACTTGGTTCCTACGT-ATTGAGGACGGCTAGTTATCTAGGTTGACATAGCTCCTACATA
1 GTGATAACATGGTTCCTACGTGA-TGAGGACGGCTGGTTATCTGGGTTGACATAGCTCCTACATA
** *
15171327 ATGAGG-AATCTAGTTGGGTGATGACACGGTTCCTACGCGATGAGGACGGCATGCCATCTAATG
65 ATGAGGAAATCTAGTCAGGTGATGACACGGTTCCTACACGATGAGGACGGCATGCCATCTAATG
* * * * *
15171390 GTGA-AACACGGTTCCTACGTGATGAGGACGGTTGGCTATCTGGGTTTAC-TCAACTCCTACATA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACAT-AGCTCCTACATA
* * * *
15171453 ATGAGGAGATCTAGTCAAGTGATGACATGGTTCCTACACGATGAGGACGACATGCCATCTAATG
65 ATGAGGAAATCTAGTCAGGTGATGACACGGTTCCTACACGATGAGGACGGCATGCCATCTAATG
* * *
15171517 GTGATAACATGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTTGACATAGCTCTTACATAA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACATAGCTCCTACATAA
* * * * *
15171582 TGAGGAAATCTAATCAGGTGATGACACGGTTCCTACAC-ATTGAGGATGGTAGGTCATCTAATG
66 TGAGGAAATCTAGTCAGGTGATGACACGGTTCCTACACGA-TGAGGACGGCATGCCATCTAATG
** * * * * **
15171645 GTGATAACATGGTTCCTATATGATAAGGACAGCTGGCTATCTGGGTTGACACAAATCCTACATAA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACATAGCTCCTACATAA
* * * * * * ** * **
15171710 TGAGGAGATATGGTCAGTTGATGACA-TGTCTCATACGTGATGAAGA-GTTATGGCCATCTTAA-
66 TGAGGAAATCTAGTCAGGTGATGACACGGT-TCCTACACGATGAGGACGGCAT-GCCATC-TAAT
15171772 G
128 G
* *
15171773 GTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGGTTGACAAAGCTCCTACATA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCT-GGGTTGACATAGCTCCTACATA
15171838 ATG
65 ATG
15171841 CATAAATCTG
Statistics
Matches: 375, Mismatches: 65, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
125 1 0.00
126 53 0.14
127 65 0.17
128 229 0.61
129 27 0.07
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (128 bp):
GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACATAGCTCCTACATAA
TGAGGAAATCTAGTCAGGTGATGACACGGTTCCTACACGATGAGGACGGCATGCCATCTAATG
Found at i:15171778 original size:256 final size:254
Alignment explanation
Indices: 15171263--15171840 Score: 745
Period size: 256 Copynumber: 2.3 Consensus size: 254
15171253 TTTAGGAAAT
* *
15171263 GTGATAACTTGGTTCCTACGT-ATTGAGGACGGCTAGTTATCTAGGTTGACATAGCTCCTACATA
1 GTGATAACATGGTTCCTACGTGA-TGAGGACGGCTGGTTATCTAGGTTGACATAGCTCCTACATA
* ** * *
15171327 ATGAGGAATCTAGTTGGGTGATGACACGGTTCCTACGCGATGAGGACGGCATGCCATCTAATGGT
65 ATGAGGAATCTAATCAGGTGATGACACGGTTCCTACACGATGAGGACGGCAGGCCATCTAATGGT
* * * * * * *
15171392 GAAACACGGTTCCTACGTGATGAGGACGGTTGGCTATCTGGGTTTACTCAACTCCTACATAATGA
130 GAAACACGGTTCCTACATGATAAGGACAGCTGGCTATCTGGGTTGACACAAATCCTACATAATGA
* * *
15171457 GGAGATCTAGTCAAGTGATGACATGGTTCCTACACGATGAGGACGACATGCCATCTAATG
195 GGAGATATAGTCAAGTGATGACATGGTTCATACACGATGAAGACGACATGCCATCTAATG
* *
15171517 GTGATAACATGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTTGACATAGCTCTTACATAA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGTTGACATAGCTCCTACATAA
* * *
15171582 TGAGGAAATCTAATCAGGTGATGACACGGTTCCTACAC-ATTGAGGATGGTAGGTCATCTAATGG
66 TGAGG-AATCTAATCAGGTGATGACACGGTTCCTACACGA-TGAGGACGGCAGGCCATCTAATGG
* *
15171646 TGATAACATGGTTCCTATATGATAAGGACAGCTGGCTATCTGGGTTGACACAAATCCTACATAAT
129 TGA-AACACGGTTCCTACATGATAAGGACAGCTGGCTATCTGGGTTGACACAAATCCTACATAAT
* ** **
15171711 GAGGAGATATGGTC-AGTTGATGACAT-GTCTCATACGTGATGAAGA-GTTATGGCCATCTTAA-
193 GAGGAGATATAGTCAAG-TGATGACATGGT-TCATACACGATGAAGACGACAT-GCCATC-TAAT
15171772 G
254 G
* * *
15171773 GTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGGTTGACAAAGCTCCTACATA
1 GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCT-AGGTTGACATAGCTCCTACATA
15171838 ATG
65 ATG
15171841 CATAAATCTG
Statistics
Matches: 281, Mismatches: 34, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
254 65 0.23
255 59 0.21
256 132 0.47
257 25 0.09
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (254 bp):
GTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGTTGACATAGCTCCTACATAA
TGAGGAATCTAATCAGGTGATGACACGGTTCCTACACGATGAGGACGGCAGGCCATCTAATGGTG
AAACACGGTTCCTACATGATAAGGACAGCTGGCTATCTGGGTTGACACAAATCCTACATAATGAG
GAGATATAGTCAAGTGATGACATGGTTCATACACGATGAAGACGACATGCCATCTAATG
Found at i:15171985 original size:64 final size:67
Alignment explanation
Indices: 15171916--15172079 Score: 185
Period size: 66 Copynumber: 2.5 Consensus size: 67
15171906 TTTGGTTAGA
** * * * *
15171916 AAAGAAACTGACTCAGAGATGA-TG-CTTCAAAAGAAGTTGTCTCAAAAGAG-AGAATTTTATTT
1 AAAGAAACAAACTCAAAGATGATTGTCTTCAAAAGAAATTGTCTAAAAAGAGAAAAATTTTATTT
15171978 CC
66 CC
* * * *
15171980 AAAGAAACAAACTCAAAGATTATTGTTTTCAAAATAAATTGTCTAAAAAGAGATAAAATTTTGTT
1 AAAGAAACAAACTCAAAGATGATTGTCTTCAAAAGAAATTGTCTAAAAAGAGA-AAAATTTTATT
15172045 TCC
65 TCC
*
15172048 AAAGAAACAAACTCAAAGAT--TTTTCTTCAAAA
1 AAAGAAACAAACTCAAAGATGATTGTCTTCAAAA
15172080 ATAGTCTTGA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
64 18 0.21
65 2 0.02
66 32 0.38
68 32 0.38
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.29
Consensus pattern (67 bp):
AAAGAAACAAACTCAAAGATGATTGTCTTCAAAAGAAATTGTCTAAAAAGAGAAAAATTTTATTT
CC
Found at i:15172023 original size:66 final size:67
Alignment explanation
Indices: 15171941--15172068 Score: 195
Period size: 68 Copynumber: 1.9 Consensus size: 67
15171931 GAGATGATGC
* * *
15171941 TTCAAAAGAAGTTGTCTCAAAAGAG-AGAATTTTATTTCCAAAGAAACAAACTCAAAGATTATTG
1 TTCAAAAGAAATTGTCTAAAAAGAGAAAAATTTTATTTCCAAAGAAACAAACTCAAAGATTATTG
15172005 TT
66 TT
* *
15172007 TTCAAAATAAATTGTCTAAAAAGAGATAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATT
1 TTCAAAAGAAATTGTCTAAAAAGAGA-AAAATTTTATTTCCAAAGAAACAAACTCAAAGATT
15172069 TTTCTTCAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 22 0.40
68 33 0.60
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (67 bp):
TTCAAAAGAAATTGTCTAAAAAGAGAAAAATTTTATTTCCAAAGAAACAAACTCAAAGATTATTG
TT
Found at i:15172318 original size:32 final size:33
Alignment explanation
Indices: 15172243--15172321 Score: 90
Period size: 32 Copynumber: 2.4 Consensus size: 33
15172233 CAGGATGTTG
* * *
15172243 AATCCCCAAAGATGCCCCCAATATTCGATATTG
1 AATCTCCAAAGATGCCCCCAACATTCGATATTA
* *
15172276 AATCTCCAAAGATG-CCCCAACATTTGATGTTA
1 AATCTCCAAAGATGCCCCCAACATTCGATATTA
15172308 AATCAT-CAAAGATG
1 AATC-TCCAAAGATG
15172322 TCTTCTATTG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
32 26 0.65
33 14 0.35
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (33 bp):
AATCTCCAAAGATGCCCCCAACATTCGATATTA
Found at i:15175840 original size:63 final size:63
Alignment explanation
Indices: 15175741--15175914 Score: 240
Period size: 63 Copynumber: 2.8 Consensus size: 63
15175731 ATTTATGATG
* * * *
15175741 ATCATGCAGAATGTGAAGATGCAAATGCATATGCAAAAGTGATGATCCTATGAAATACAATGT
1 ATCATGCAGAATGCGAAGATGCAAATGCAGATGCAAAAATGATGATCCTATGAAATACAATGC
* * * * *
15175804 ATCATACAGAATGCGAAGATGCAAATGCAGATGCAAAATTGATGATCTTCTGAAATGCAATGC
1 ATCATGCAGAATGCGAAGATGCAAATGCAGATGCAAAAATGATGATCCTATGAAATACAATGC
* * *
15175867 ATCATGCAGAATACGAAGATGCAAATGTAGATGCAAAAATGTTGATCC
1 ATCATGCAGAATGCGAAGATGCAAATGCAGATGCAAAAATGATGATCC
15175915 CAATGACGAA
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 97 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (63 bp):
ATCATGCAGAATGCGAAGATGCAAATGCAGATGCAAAAATGATGATCCTATGAAATACAATGC
Found at i:15177599 original size:5 final size:5
Alignment explanation
Indices: 15177589--15177614 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15177579 TGTAATGACG
15177589 ATGCA ATGCA ATGCA ATGCA ATGCA A
1 ATGCA ATGCA ATGCA ATGCA ATGCA A
15177615 AGAAAGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATGCA
Found at i:15177667 original size:32 final size:32
Alignment explanation
Indices: 15177631--15177692 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
15177621 ATAAAAAATG
* *
15177631 ACACAATCAAAAGAAAAGAAATAAATTAGTGT
1 ACACAAACAAAACAAAAGAAATAAATTAGTGT
*
15177663 ACACAAACAAAACAAAAGAAATTAATTAGT
1 ACACAAACAAAACAAAAGAAATAAATTAGT
15177693 ACAACTAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.61, C:0.11, G:0.10, T:0.18
Consensus pattern (32 bp):
ACACAAACAAAACAAAAGAAATAAATTAGTGT
Found at i:15179486 original size:30 final size:31
Alignment explanation
Indices: 15179438--15179540 Score: 131
Period size: 30 Copynumber: 3.4 Consensus size: 31
15179428 TAACTTAGAA
15179438 GACTAAAATAGAAAAAAATCAGAAACTTAA-G
1 GACTAAAATAG-AAAAAATCAGAAACTTAAGG
*
15179469 AACTAAAATAGAAAAAATCA-AAACTTAAGG
1 GACTAAAATAGAAAAAATCAGAAACTTAAGG
* * * *
15179499 GATTAAAATAGTAAAAAT-AGATATTTAAGG
1 GACTAAAATAGAAAAAATCAGAAACTTAAGG
15179529 GACTAAAATAGA
1 GACTAAAATAGA
15179541 TATTATGAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
29 9 0.15
30 43 0.69
31 10 0.16
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.20
Consensus pattern (31 bp):
GACTAAAATAGAAAAAATCAGAAACTTAAGG
Found at i:15187544 original size:128 final size:129
Alignment explanation
Indices: 15187412--15187656 Score: 332
Period size: 128 Copynumber: 1.9 Consensus size: 129
15187402 GGTTGACATA
*
15187412 GCTCCTACATGATGAGGAGATCAGGTCGGGTGATGACATGACTCAAACATGATGAAGA-GTTC-G
1 GCTCCTACATGATGAGGAGATCAGGTCGAGTGATGACATGACTCAAACATGATGAAGACG-TCAG
*
15187475 GCCATCTAAAGGTGAAAACACGGTTCCTACGGGATGAGGACGGTTGGTTATCTGGGTTTGACACG
65 GCCATCTAAAGGTGAAAACACGGTTCCTACGGGATGAGGACGGCTGGTTATCTGGGTTTGACACG
** ** ** * * *
15187540 GCTCCTATGTGATGAGGAGATCAGGTCGAGTGATGACATGGTTCCTACGTGATGAGGACGTCATG
1 GCTCCTACATGATGAGGAGATCAGGTCGAGTGATGACATGACTCAAACATGATGAAGACGTCAGG
* * * *
15187605 TCATCTATAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCT
66 CCATCTAAAGGTGAAAACACGGTTCCTACGGGATGAGGACGGCTGGTTATCT
15187657 AGAGTGACAA
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
128 51 0.51
129 49 0.49
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (129 bp):
GCTCCTACATGATGAGGAGATCAGGTCGAGTGATGACATGACTCAAACATGATGAAGACGTCAGG
CCATCTAAAGGTGAAAACACGGTTCCTACGGGATGAGGACGGCTGGTTATCTGGGTTTGACACG
Found at i:15188168 original size:86 final size:85
Alignment explanation
Indices: 15188054--15188253 Score: 262
Period size: 86 Copynumber: 2.3 Consensus size: 85
15188044 TTTCGTTAAT
* *
15188054 AGATAACCC-TCATCGCCATGAGTTATGCTGTAAATTTGACATGT-CC-TGGAGCTGAATGTAAT
1 AGATAACCCTTC-TCACCTTGAGTTATGCTGTAAATTTG--ATGTGCCTTGGAGCTGAATGTAAT
15188116 CAAACTCAAAGATCTCTTGCTGAC
63 CAAACTCAAAGATCT-TTGCTGAC
* * *
15188140 AGATAACTCTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCAA
1 AGATAACCCTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTGGAGCTGAATGTAATCAA
* * *
15188205 ACTCGAAGGTCTTTGTTGAC
66 ACTCAAAGATCTTTGCTGAC
*
15188225 AGATAACCCTTCTCTCCTTGAGTTATGCT
1 AGATAACCCTTCTCACCTTGAGTTATGCT
15188254 ACCAATAGTT
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
84 4 0.04
85 36 0.36
86 59 0.58
87 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (85 bp):
AGATAACCCTTCTCACCTTGAGTTATGCTGTAAATTTGATGTGCCTTGGAGCTGAATGTAATCAA
ACTCAAAGATCTTTGCTGAC
Found at i:15188439 original size:86 final size:86
Alignment explanation
Indices: 15188318--15188545 Score: 278
Period size: 86 Copynumber: 2.7 Consensus size: 86
15188308 TCATGATTCT
* * * *
15188318 TCAGGTGGTTCCCCTTAACGAGTCTGAACCAAGTGAGATGATCTTTGGATGACTCCTCTTCACGG
1 TCAGGTGGTTCCCCTTAGCGGGTCTGAACCAAGTGAGATGATCTTTGGATGACTCCACTTCACAG
* *
15188383 GAAAACCATGTGGCATATTCC
66 GAAAACCATATGGCATATCCC
* * * * *
15188404 TTAGGTGATTCCCCTTAGCGGGTCTAAACCGAGTGAGATGAAT-TTTGGATGACTCCACTTCATA
1 TCAGGTGGTTCCCCTTAGCGGGTCTGAACCAAGTGAGATG-ATCTTTGGATGACTCCACTTCACA
* *
15188468 GGAAAGCCATATGGTATATCCC
65 GGAAAACCATATGGCATATCCC
* * * * *
15188490 TCGGGTGGTTCCCCTTAGTGGGTCTGGACTAAGTGAGATGATCTTTAGATGACTCC
1 TCAGGTGGTTCCCCTTAGCGGGTCTGAACCAAGTGAGATGATCTTTGGATGACTCC
15188546 CCTTAACTGC
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
85 2 0.02
86 114 0.97
87 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (86 bp):
TCAGGTGGTTCCCCTTAGCGGGTCTGAACCAAGTGAGATGATCTTTGGATGACTCCACTTCACAG
GAAAACCATATGGCATATCCC
Found at i:15188981 original size:32 final size:32
Alignment explanation
Indices: 15188940--15189028 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
15188930 TTGCATAAGG
*
15188940 ATGTTGAATCTCTAAAGATGCCCCAATATTCA
1 ATGTTGAATCTCTAAAGATGCCCCAACATTCA
* * * **
15188972 ATGTTGAATCTCTGAATATGCCCTAACATTTG
1 ATGTTGAATCTCTAAAGATGCCCCAACATTCA
* *
15189004 CTGTTGAATCTTTAAAGATGCCCCA
1 ATGTTGAATCTCTAAAGATGCCCCA
15189029 TTGTTCCTAT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (32 bp):
ATGTTGAATCTCTAAAGATGCCCCAACATTCA
Found at i:15189956 original size:7 final size:7
Alignment explanation
Indices: 15189932--15190040 Score: 60
Period size: 7 Copynumber: 14.7 Consensus size: 7
15189922 TTTTCTTTGT
15189932 TTTTTTC
1 TTTTTTC
*
15189939 TTCTTTC
1 TTTTTTC
15189946 TTTTCTT-
1 TTTT-TTC
15189953 TTTTTTC
1 TTTTTTC
*
15189960 TTTTCTC
1 TTTTTTC
15189967 TTTTTGCTC
1 TTTTT--TC
**
15189976 TGATTGCTC
1 T--TTTTTC
15189985 TTTTTT-
1 TTTTTTC
*
15189991 TATTTTC
1 TTTTTTC
* *
15189998 TCTTTAC
1 TTTTTTC
15190005 TTTTTTCC
1 TTTTTT-C
15190013 TTTTTTCC
1 TTTTTT-C
15190021 TTTTTTTC
1 -TTTTTTC
*
15190029 TTTTCTC
1 TTTTTTC
15190036 TTTTT
1 TTTTT
15190041 ACTCTGATTG
Statistics
Matches: 78, Mismatches: 15, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
6 7 0.09
7 45 0.58
8 12 0.15
9 12 0.15
11 2 0.03
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (7 bp):
TTTTTTC
Done.