Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 67 of 73
Found at i:15487481 original size:36 final size:38
Alignment explanation
Indices: 15487421--15487504 Score: 104
Period size: 38 Copynumber: 2.2 Consensus size: 38
15487411 AAAATAATAT
15487421 ATATATATATAAAATAGATGAAAAC-ATAAAAAAGGTAA-
1 ATATATATATAAAATAGATGAAAACAATAAAAAA--TAAC
*
15487459 ATATATATATAAATTA-AT-AAAACAGATAAAAAATAAC
1 ATATATATATAAAATAGATGAAAACA-ATAAAAAATAAC
15487496 ATATATATA
1 ATATATATA
15487505 CATGCAATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
36 8 0.19
37 11 0.26
38 23 0.55
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (38 bp):
ATATATATATAAAATAGATGAAAACAATAAAAAATAAC
Found at i:15487713 original size:19 final size:19
Alignment explanation
Indices: 15487689--15487748 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
15487679 TAACACCTAT
* *
15487689 ATATATATATTGATATAAA
1 ATATATATATTCATAAAAA
*
15487708 ATATATGTA-TCATAAAAA
1 ATATATATATTCATAAAAA
*
15487726 ATATAATATAAT-ATAAATAA
1 ATAT-ATATATTCATAAA-AA
15487746 ATA
1 ATA
15487749 AAAACAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.32
19 17 0.50
20 6 0.18
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (19 bp):
ATATATATATTCATAAAAA
Found at i:15487894 original size:14 final size:13
Alignment explanation
Indices: 15487852--15487914 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 13
15487842 TACATATAAT
15487852 ATTAATACTAAAGAA
1 ATTAATA-TAAA-AA
15487867 ATTAATATACAAAA
1 ATTAATATA-AAAA
15487881 ATGTAATATAAAAA
1 AT-TAATATAAAAA
*
15487895 A-TAAAATAAATAA
1 ATTAATATAAA-AA
*
15487908 ATAAATA
1 ATTAATA
15487915 AATAATGCGA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 8 0.20
13 3 0.07
14 14 0.34
15 16 0.39
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (13 bp):
ATTAATATAAAAA
Found at i:15489482 original size:31 final size:30
Alignment explanation
Indices: 15489401--15489484 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 30
15489391 ACACTTCAAT
* * * *
15489401 AAATTTAATAATAATTTTATAA-TGTTTTA
1 AAATTTAATGATCATTATATAATTATTTTA
* * *
15489430 CAATTTAATTATCATTTTATAATTATTTTA
1 AAATTTAATGATCATTATATAATTATTTTA
*
15489460 AAATTTTAATGATTATTATATAATT
1 AAA-TTTAATGATCATTATATAATT
15489485 TCTAAGTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
29 19 0.42
30 8 0.18
31 18 0.40
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (30 bp):
AAATTTAATGATCATTATATAATTATTTTA
Found at i:15496758 original size:27 final size:27
Alignment explanation
Indices: 15496728--15496784 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
15496718 ATCTAATTTT
15496728 AAAACATAGGTTGTATTTGCTCAAAAG
1 AAAACATAGGTTGTATTTGCTCAAAAG
15496755 AAAACATAGGTTGTATTTGCTCAAAAG
1 AAAACATAGGTTGTATTTGCTCAAAAG
15496782 AAA
1 AAA
15496785 TTCAACCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.28
Consensus pattern (27 bp):
AAAACATAGGTTGTATTTGCTCAAAAG
Found at i:15497386 original size:22 final size:22
Alignment explanation
Indices: 15497358--15497410 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
15497348 GAGTTGGGGA
15497358 GGAGCTCGAGGATGAAAAGGTT
1 GGAGCTCGAGGATGAAAAGGTT
15497380 GGAGCTCGAGGATGAAAAGGTT
1 GGAGCTCGAGGATGAAAAGGTT
*
15497402 GGAGATCGA
1 GGAGCTCGA
15497411 AGATTACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.09, G:0.42, T:0.17
Consensus pattern (22 bp):
GGAGCTCGAGGATGAAAAGGTT
Found at i:15497999 original size:23 final size:23
Alignment explanation
Indices: 15497973--15498020 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
15497963 ATAAAGTATA
*
15497973 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
15497996 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
15498019 AT
1 AT
15498021 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:15498427 original size:21 final size:22
Alignment explanation
Indices: 15498402--15498453 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
15498392 ACACTTTACA
*
15498402 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
15498425 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
15498448 ATATAA
1 ATATAA
15498454 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:15498438 original size:23 final size:23
Alignment explanation
Indices: 15498412--15498474 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
15498402 ATATAACCAC
15498412 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
15498435 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
15498458 TACCTATTACATCATAT
1 TACCTATTACATTATAT
15498475 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:15498930 original size:39 final size:39
Alignment explanation
Indices: 15498876--15498962 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
15498866 TCAAGTTGTA
*
15498876 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
15498915 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
15498954 GATTTTGAT
1 GATTTTGAT
15498963 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:15499244 original size:18 final size:18
Alignment explanation
Indices: 15499221--15499257 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15499211 CGAAATATAT
15499221 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
15499239 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
15499257 A
1 A
15499258 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:15499586 original size:25 final size:25
Alignment explanation
Indices: 15499552--15499602 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
15499542 TTTTTCCAAA
*
15499552 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
15499577 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
15499602 T
1 T
15499603 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:15499895 original size:21 final size:22
Alignment explanation
Indices: 15499870--15499921 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
15499860 ACACTTTACA
*
15499870 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
15499893 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
15499916 ATATAA
1 ATATAA
15499922 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:15499906 original size:23 final size:23
Alignment explanation
Indices: 15499880--15499942 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
15499870 ATATAACCAC
15499880 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
15499903 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
15499926 TACCTATTACATCATAT
1 TACCTATTACATTATAT
15499943 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:15500286 original size:25 final size:25
Alignment explanation
Indices: 15500229--15500294 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
15500219 CACTCAAAAG
*
15500229 ATGTATATACCTAAATATATAGTTA
1 ATGTACATACCTAAATATATAGTTA
*** *
15500254 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATATAGTTA
*
15500279 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
15500295 TTAATGATAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATATAGTTA
Found at i:15503065 original size:184 final size:184
Alignment explanation
Indices: 15502756--15503283 Score: 930
Period size: 184 Copynumber: 2.9 Consensus size: 184
15502746 TTCAAATTAC
* * *
15502756 CGACACTTTTTTAAATGGTATCGACACATTTTTATTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
* *
15502821 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGATATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
15502886 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
15502940 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
*
15503005 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGTTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
15503070 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
*
15503124 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACAAAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
* *
15503189 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
* * * **
15503254 ATATTGCAAATTTACCTATTTTATTATAAT
131 ATATTACAAAATTATCTATTACATTATAAT
15503284 ATGTTGAAAG
Statistics
Matches: 329, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
184 329 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (184 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
Found at i:15504760 original size:3 final size:3
Alignment explanation
Indices: 15504752--15504796 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
15504742 ACTTGTTTGG
* * *
15504752 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
15504797 GCCAGCTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.27, C:0.33, G:0.02, T:0.38
Consensus pattern (3 bp):
ATC
Found at i:15504769 original size:12 final size:12
Alignment explanation
Indices: 15504756--15504844 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
15504746 GTTTGGATCA
* *
15504756 TCATCTTCATCA
1 TCATCGTCATCT
* *
15504768 TCATCATCATCA
1 TCATCGTCATCT
* *
15504780 TCGTCATCATCT
1 TCATCGTCATCT
* *
15504792 TCATCGCCAGCT
1 TCATCGTCATCT
*
15504804 TCATCGTCATCG
1 TCATCGTCATCT
15504816 TCATCGTCATCT
1 TCATCGTCATCT
*
15504828 TCATCGTCAGCT
1 TCATCGTCATCT
15504840 TCATC
1 TCATC
15504845 TTCTGCGACC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.36
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:15504775 original size:18 final size:18
Alignment explanation
Indices: 15504756--15504847 Score: 85
Period size: 18 Copynumber: 5.1 Consensus size: 18
15504746 GTTTGGATCA
* *
15504756 TCATCTTCATCATCATCA
1 TCATCGTCATCATCATCT
* *
15504774 TCATCATCGTCATCATCT
1 TCATCGTCATCATCATCT
* * * *
15504792 TCATCGCCAGCTTCATCG
1 TCATCGTCATCATCATCT
*
15504810 TCATCGTCATCGTCATCT
1 TCATCGTCATCATCATCT
* *
15504828 TCATCGTCAGCTTCATCT
1 TCATCGTCATCATCATCT
15504846 TC
1 TC
15504848 TGCGACCGCT
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.37
Consensus pattern (18 bp):
TCATCGTCATCATCATCT
Found at i:15504847 original size:6 final size:6
Alignment explanation
Indices: 15504756--15504847 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
15504746 GTTTGGATCA
* * * * * * * *
15504756 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * * *
15504804 TCATCG TCATCG TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
15504848 TGCGACCGCT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.37
Consensus pattern (6 bp):
TCATCT
Found at i:15506674 original size:199 final size:199
Alignment explanation
Indices: 15506307--15507874 Score: 2971
Period size: 199 Copynumber: 7.9 Consensus size: 199
15506297 TTTAAATTAG
15506307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506372 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15506436 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15506501 AAAA
196 AAAA
*
15506505 TATCGACACAAACTACATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506570 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15506635 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15506700 AAAA
196 AAAA
15506704 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506769 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15506833 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15506898 AAAA
196 AAAA
15506902 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
15506967 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15507032 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15507097 AAAA
196 AAAA
15507101 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15507166 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15507231 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15507295 AAAA
196 AAAA
15507299 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15507364 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15507429 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15507494 AAAA
196 AAAA
*
15507498 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
15507563 ATTGTACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGATTTTGGGAC
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15507628 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
15507693 AAAA
196 AAAA
15507697 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
15507762 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
15507827 TTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
15507875 GGCCATATTG
Statistics
Matches: 1342, Mismatches: 23, Indels: 7
0.98 0.02 0.01
Matches are distributed among these distances:
198 476 0.35
199 807 0.60
200 20 0.01
201 39 0.03
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAA
Found at i:15507040 original size:397 final size:398
Alignment explanation
Indices: 15506307--15507874 Score: 2998
Period size: 397 Copynumber: 3.9 Consensus size: 398
15506297 TTTAAATTAG
15506307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506372 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15506436 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
*
15506501 AAAATATCGACACAAACTACATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
15506566 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
15506631 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
15506696 AAAAAAAA
391 AAAAAAAA
15506704 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506769 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15506833 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
15506898 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
*
15506963 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
15507028 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
15507093 AAAAAAAA
391 AAAAAAAA
15507101 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15507166 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15507231 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
15507295 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
15507360 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
15507425 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
15507490 AAAAAAAA
391 AAAAAAAA
*
15507498 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
15507563 ATTGTACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGATTTTGGGAC
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15507628 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
15507693 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
* *
15507758 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTT
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTT
*
15507823 GGGATTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
325 GGGATCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
15507875 GGCCATATTG
Statistics
Matches: 1154, Mismatches: 13, Indels: 5
0.98 0.01 0.00
Matches are distributed among these distances:
397 869 0.75
398 224 0.19
399 21 0.02
400 40 0.03
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGG
AAAAAAAA
Found at i:15507438 original size:596 final size:596
Alignment explanation
Indices: 15506307--15507874 Score: 2978
Period size: 596 Copynumber: 2.6 Consensus size: 596
15506297 TTTAAATTAG
15506307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
15506372 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15506436 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
*
15506501 AAAATATCGACACAAACTACATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
15506566 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
15506631 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
15506696 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
391 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
15506761 CCGGTATAATTGTACCGGTTAGATTGAAAATTACATATTACATTATACTTTTGGGTTCGATGATT
456 CCGGTATAATTGTACCGGTTAGATTGAAAATTACATATTACATTATACTTTTGGGTTCGATGATT
* *
15506826 TTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTC
521 TTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATC
15506891 TGGAAAAAAAA
586 TGGAAAAAAAA
15506902 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
15506967 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15507032 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
15507097 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
15507162 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
15507227 GGATCGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
15507291 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
391 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
15507356 CCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
456 CCGGTATAATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGAT
15507421 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAAT
520 TTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAAT
15507486 CTGGAAAAAAAA
585 CTGGAAAAAAAA
*
15507498 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
15507563 ATTGTACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGATTTTGGGAC
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15507628 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
15507693 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
* *
15507758 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTT
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTT
*
15507823 GGGATTGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
325 GGGATCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
15507875 GGCCATATTG
Statistics
Matches: 952, Mismatches: 16, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
595 228 0.24
596 664 0.70
597 21 0.02
599 39 0.04
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (596 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
CCGGTATAATTGTACCGGTTAGATTGAAAATTACATATTACATTATACTTTTGGGTTCGATGATT
TTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCAATC
TGGAAAAAAAA
Found at i:15508039 original size:19 final size:19
Alignment explanation
Indices: 15507993--15508041 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
15507983 TTATATTCAC
*
15507993 ATACAAAAATATAAAGCGT
1 ATACAAAATTATAAAGCGT
* *
15508012 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAAGCGT
15508031 ATACAAAATTA
1 ATACAAAATTA
15508042 ACTCGACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (19 bp):
ATACAAAATTATAAAGCGT
Found at i:15509640 original size:15 final size:14
Alignment explanation
Indices: 15509595--15509642 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
15509585 CATCGACTTC
*
15509595 CTTCCTCCTCATTT
1 CTTCCTCCTCTTTT
15509609 CTTCCAT-CTCTTCTT
1 CTTCC-TCCTCTT-TT
15509624 CTTCCTCCCTCTTTT
1 CTTCCT-CCTCTTTT
15509639 CTTC
1 CTTC
15509643 TTCATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 10 0.34
15 14 0.48
16 5 0.17
ACGTcount: A:0.04, C:0.44, G:0.00, T:0.52
Consensus pattern (14 bp):
CTTCCTCCTCTTTT
Found at i:15509968 original size:21 final size:22
Alignment explanation
Indices: 15509944--15509992 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
15509934 AGTGTATCTT
*
15509944 CGACTCT-CTCAAGTTTCTCTA
1 CGACTCTGATCAAGTTTCTCTA
*
15509965 CGACT-TGATCAAGTTTCTCTT
1 CGACTCTGATCAAGTTTCTCTA
15509986 CGACTCT
1 CGACTCT
15509993 TGATTGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.18, C:0.31, G:0.12, T:0.39
Consensus pattern (22 bp):
CGACTCTGATCAAGTTTCTCTA
Found at i:15512240 original size:17 final size:18
Alignment explanation
Indices: 15512218--15512260 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
15512208 ATATATCCAA
15512218 TATCATT-TTACCGGTTT
1 TATCATTGTTACCGGTTT
15512235 TATCATTTTGTTACCGGTTT
1 TATCA--TTGTTACCGGTTT
15512255 TATCAT
1 TATCAT
15512261 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 1 0.04
19 2 0.09
20 15 0.65
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (18 bp):
TATCATTGTTACCGGTTT
Found at i:15512250 original size:20 final size:20
Alignment explanation
Indices: 15512223--15512269 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
15512213 TCCAATATCA
15512223 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
15512242 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
15512263 TTTTACC
1 TTTTACC
15512270 TGTTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:15512417 original size:20 final size:20
Alignment explanation
Indices: 15512391--15512436 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
15512381 CACTTTTAAA
15512391 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
15512410 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
15512431 TTTACC
1 TTTACC
15512437 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:15515409 original size:52 final size:52
Alignment explanation
Indices: 15515352--15515454 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
15515342 TTCTTGTTTG
* *
15515352 ATTAATAGAATAATCATCGTAAAATGATTTTTTTTCTTTTATTTGTATAATT
1 ATTAATAGAATAATCATCGTAAAATGACTTTTTTTCTTTTATTGGTATAATT
*
15515404 ATTAATAGAATAATCATCGTAAAATGACTTTTTTTGTTTTATTGGTATAAT
1 ATTAATAGAATAATCATCGTAAAATGACTTTTTTTCTTTTATTGGTATAAT
15515455 CATTCTGCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.50
Consensus pattern (52 bp):
ATTAATAGAATAATCATCGTAAAATGACTTTTTTTCTTTTATTGGTATAATT
Found at i:15526823 original size:32 final size:32
Alignment explanation
Indices: 15526782--15526842 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
15526772 ATCAAGAACC
*
15526782 CGAAGATCTAGATACC-CAAAACTTCGGATACT
1 CGAAAATCTAGATACCTCAAAAC-TCGGATACT
*
15526814 CGAAAATCTAGATACCTGAAAACTCGGAT
1 CGAAAATCTAGATACCTCAAAACTCGGAT
15526843 TTGAACACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 21 0.81
33 5 0.19
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.21
Consensus pattern (32 bp):
CGAAAATCTAGATACCTCAAAACTCGGATACT
Found at i:15527279 original size:6 final size:6
Alignment explanation
Indices: 15527268--15527297 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15527258 TTAACTTTCA
*
15527268 ATATTT ATATTT ATATTT ATATAT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT
15527298 TTCAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
ATATTT
Found at i:15535673 original size:27 final size:27
Alignment explanation
Indices: 15535643--15535697 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
15535633 ATTATTTTAA
15535643 AAAAATTAAA-TA-TAAAATATCAAAAAT
1 AAAAATTAAATTACTAAAATA--AAAAAT
15535670 AAAAATTAAATTACTAAAATAAAAAAT
1 AAAAATTAAATTACTAAAATAAAAAAT
15535697 A
1 A
15535698 TATTATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 17 0.65
28 2 0.08
29 7 0.27
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (27 bp):
AAAAATTAAATTACTAAAATAAAAAAT
Found at i:15535680 original size:20 final size:20
Alignment explanation
Indices: 15535643--15535694 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
15535633 ATTATTTTAA
*
15535643 AAAAATTAAATATAAAA-TATC
1 AAAAA-TAAAAATAAAATTA-C
*
15535664 AAAAATAAAAATTAAATTAC
1 AAAAATAAAAATAAAATTAC
*
15535684 TAAAATAAAAA
1 AAAAATAAAAA
15535695 ATATATTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAAATAAAAATAAAATTAC
Found at i:15535702 original size:20 final size:20
Alignment explanation
Indices: 15535665--15535702 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15535655 TAAAATATCA
*
15535665 AAAATAAAAATTAAATTACT
1 AAAATAAAAAATAAATTACT
*
15535685 AAAATAAAAAATATATTA
1 AAAATAAAAAATAAATTA
15535703 TTATATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATAAAAAATAAATTACT
Found at i:15537636 original size:30 final size:30
Alignment explanation
Indices: 15537602--15537658 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
15537592 AATCAATACT
*
15537602 TAAACATTCAAAAATTTTGTAAATTCATCC
1 TAAACATTCAAAAACTTTGTAAATTCATCC
* **
15537632 TAAACTTTCTTAAACTTTGTAAATTCA
1 TAAACATTCAAAAACTTTGTAAATTCA
15537659 ACCTCCAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (30 bp):
TAAACATTCAAAAACTTTGTAAATTCATCC
Found at i:15541648 original size:17 final size:17
Alignment explanation
Indices: 15541626--15541666 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
15541616 TATAATAAAC
15541626 TTATGATAATTAAATTA
1 TTATGATAATTAAATTA
15541643 TTATGATAATTAAATTA
1 TTATGATAATTAAATTA
*
15541660 ATATGAT
1 TTATGAT
15541667 TATTCTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (17 bp):
TTATGATAATTAAATTA
Found at i:15541694 original size:51 final size:52
Alignment explanation
Indices: 15541636--15541733 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 52
15541626 TTATGATAAT
* *
15541636 TAAATTATTATGATAATTAAATTAATATGATTA-TTCTTTAAAATTTTATCA
1 TAAATTATTATGATAATCAAATTAATATAATTACTTCTTTAAAATTTTATCA
* *
15541687 TAAATTATTATGATAATCAAATTAATATAATTACTTTTTTGAAATTT
1 TAAATTATTATGATAATCAAATTAATATAATTACTTCTTTAAAATTT
15541734 AATTTTATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 31 0.74
52 11 0.26
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (52 bp):
TAAATTATTATGATAATCAAATTAATATAATTACTTCTTTAAAATTTTATCA
Found at i:15542417 original size:20 final size:20
Alignment explanation
Indices: 15542376--15542417 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
15542366 ATTTACAAGG
*
15542376 CATCAGTGAGTAATGGAAAA
1 CATCAGTGAGTAATAGAAAA
*
15542396 CATCAGTGAGTAATAGACAA
1 CATCAGTGAGTAATAGAAAA
15542416 CA
1 CA
15542418 ACAATCAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (20 bp):
CATCAGTGAGTAATAGAAAA
Found at i:15542485 original size:22 final size:23
Alignment explanation
Indices: 15542442--15542485 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15542432 TCATATACTA
* *
15542442 ATTCAGCAAGCATTGTTGCATTG
1 ATTCAACAAGCATTCTTGCATTG
15542465 ATTCAACAAGCA-TCTTGCATT
1 ATTCAACAAGCATTCTTGCATT
15542486 AAGAAAGCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (23 bp):
ATTCAACAAGCATTCTTGCATTG
Found at i:15542604 original size:20 final size:20
Alignment explanation
Indices: 15542581--15542621 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15542571 AATATCAAGT
* *
15542581 AGAAGCAAGCAATATTAAAC
1 AGAAGCAAACAATATAAAAC
15542601 AGAAGCAAACAATATAAAAC
1 AGAAGCAAACAATATAAAAC
15542621 A
1 A
15542622 AAAGTAGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.61, C:0.15, G:0.12, T:0.12
Consensus pattern (20 bp):
AGAAGCAAACAATATAAAAC
Found at i:15544394 original size:61 final size:61
Alignment explanation
Indices: 15544312--15544458 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
15544302 TAGCGTGGTA
* * *
15544312 TCATAGTTTTAAATTTGTTCAATTTAGTCCAAATTTAATGA-GGCAATATATTAATTTAAGCT
1 TCATA-TTTAAAATTTATTCAATTTAGTCCAAATTTAAT-ATGACAATATATTAATTTAAGCT
* * * * * * *
15544374 TCATATTTCAATTTTTTTCAATTTTGTCCAAATTTAATATTACAGTTTATTAATTTAAGCT
1 TCATATTTAAAATTTATTCAATTTAGTCCAAATTTAATATGACAATATATTAATTTAAGCT
15544435 TCATATTTAAAATTTATTCAATTT
1 TCATATTTAAAATTTATTCAATTT
15544459 GATCCTTATA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
60 1 0.01
61 67 0.92
62 5 0.07
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (61 bp):
TCATATTTAAAATTTATTCAATTTAGTCCAAATTTAATATGACAATATATTAATTTAAGCT
Found at i:15544631 original size:7 final size:7
Alignment explanation
Indices: 15544619--15544684 Score: 71
Period size: 7 Copynumber: 9.4 Consensus size: 7
15544609 GTTTGTATAC
15544619 ACCCTAA
1 ACCCTAA
15544626 ACCCTAA
1 ACCCTAA
*
15544633 ACCTTAA
1 ACCCTAA
**
15544640 ACTTTAA
1 ACCCTAA
15544647 ACCCTAA
1 ACCCTAA
*
15544654 ACCATAA
1 ACCCTAA
*
15544661 TA-CTTAA
1 -ACCCTAA
15544668 ACCCTAA
1 ACCCTAA
15544675 ACCCTAA
1 ACCCTAA
15544682 ACC
1 ACC
15544685 ATATATACTA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
6 1 0.02
7 48 0.96
8 1 0.02
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (7 bp):
ACCCTAA
Found at i:15544649 original size:21 final size:20
Alignment explanation
Indices: 15544623--15544683 Score: 86
Period size: 21 Copynumber: 3.0 Consensus size: 20
15544613 GTATACACCC
*
15544623 TAAACCCTAAACCTTAAACTT
1 TAAACCCTAAACCATAAAC-T
15544644 TAAACCCTAAACCATAATACT
1 TAAACCCTAAACCATAA-ACT
*
15544665 TAAACCCTAAACCCTAAAC
1 TAAACCCTAAACCATAAAC
15544684 CATATATACT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 2 0.05
21 33 0.89
22 2 0.05
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAACCCTAAACCATAAACT
Found at i:15544666 original size:28 final size:28
Alignment explanation
Indices: 15544619--15544693 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
15544609 GTTTGTATAC
* **
15544619 ACCCTAAACCCTAA-ACCTTAAACTTTAA
1 ACCCTAAACCATAATA-CTTAAACCCTAA
15544647 ACCCTAAACCATAATACTTAAACCCTAA
1 ACCCTAAACCATAATACTTAAACCCTAA
15544675 ACCCTAAACCATATATACT
1 ACCCTAAACCATA-ATACT
15544694 ATATATATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 36 0.86
29 6 0.14
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (28 bp):
ACCCTAAACCATAATACTTAAACCCTAA
Found at i:15544710 original size:22 final size:22
Alignment explanation
Indices: 15544679--15544733 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
15544669 CCCTAAACCC
*
15544679 TAAACCATATA-TACTATA-TATA
1 TAAACTATATAGT-CTATATTA-A
*
15544701 TAAACTATATAGTTTATATTAA
1 TAAACTATATAGTCTATATTAA
15544723 TAAACTATATA
1 TAAACTATATA
15544734 ATTTATACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 26 0.90
23 3 0.10
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAACTATATAGTCTATATTAA
Found at i:15544913 original size:20 final size:20
Alignment explanation
Indices: 15544867--15544915 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
15544857 TATAAACTAT
*
15544867 ATAATAT-TATAGTTTATAC
1 ATAATATATATAGTTTACAC
**
15544886 ATGGTATATATAGTTTACAC
1 ATAATATATATAGTTTACAC
15544906 ATAATATATA
1 ATAATATATA
15544916 ATATAAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (20 bp):
ATAATATATATAGTTTACAC
Found at i:15544914 original size:2 final size:2
Alignment explanation
Indices: 15544909--15545035 Score: 132
Period size: 2 Copynumber: 62.0 Consensus size: 2
15544899 TTTACACATA
* * *
15544909 AT AT AT A- AT AT AA ACT AT AT AGT TT AT AT AT AT A- AT AC AT AT
1 AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT
* * * *
15544951 ACT TT AT AT AT AA ACT AT AT AGT TT AT AT AC AT AT AT AT AT AT
1 A-T AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT
15544994 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15545036 TAGTTGTTTT
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
1 2 0.02
2 97 0.93
3 5 0.05
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:15545566 original size:210 final size:210
Alignment explanation
Indices: 15545105--15546225 Score: 1775
Period size: 210 Copynumber: 5.3 Consensus size: 210
15545095 TATTTTTCAT
* *
15545105 ATTTGAACCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTTAAT
1 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
*
15545170 TTAGTCCTCCACATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTATT-
66 TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTT-TTA
* * * *
15545234 AATTGGCCCATAA-TTTTTAAATGAGTATAATTTAGTACATTTTTGTATTAATTTCAACCTCAAA
130 AATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACA
15545298 ATTTAAAATTATTTCG
195 ATTTAAAATTATTTCG
* * * *
15545314 ATTTGATCCCTTTTATATTGTTTAGTTTATTTAAATTTTTATTTGTAATTTTATATTTGTTCAAT
1 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
* * * *
15545379 TTAGTCCTCTAAATTTTATTTACATCTTAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
66 TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
* * *
15545444 ATTGGCCCCTAACTTTTTAAATGGGTATAATTTAGTACCTTTTTGTATTAATTTCAACATCATAA
131 ATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAA
15545509 TTTAAAATTATTTCG
196 TTTAAAATTATTTCG
* * *
15545524 ATTTAATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTTTAATTTCATATTTGTTCAGT
1 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
* *
15545589 TTAGTCCTCTAATTTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTTA
66 TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTA-TTTTTA
*
15545654 AATTGGCCCATAACTTTTTAAATGGG--T-ATTTAGTACTTTTTTTTATTAATTTCAACATCACA
130 AATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACA
15545716 ATTTAAAATTATTTCG
195 ATTTAAAATTATTTCG
*
15545732 ATTTCATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
1 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
* *
15545797 TTAGTCCTCCAATTTTTATTTGCATTTGAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
66 TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
15545862 ATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAA
131 ATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAA
15545927 TTTAAAATTATTTCG
196 TTTAAAATTATTTCG
*
15545942 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCGAT
1 ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
* * * * *
15546007 TTAGTCCTCCAAATTTTATTTGCATCTGAAATTGATCCATACTTTTTACTTAATTCTATTTTTTA
66 TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
* * * *
15546072 ATTGGCCAATAAATTTTTAAATGGGTATACTTTAGTACTTTTTTGTATTAATTTCAACCTCACAA
131 ATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAA
*
15546137 TTTAAAATTATTTTG
196 TTTAAAATTATTTCG
* *
15546152 ATTTGATCCCTCATCAATGTGTGTAGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTT
1 ATTTGATCCCT--T---T-TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTG
15546217 TTCAATTTA
60 TTCAATTTA
15546226 ATTCTTAAAT
Statistics
Matches: 847, Mismatches: 53, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
207 32 0.04
208 168 0.20
209 129 0.15
210 433 0.51
211 31 0.04
212 1 0.00
215 1 0.00
216 52 0.06
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (210 bp):
ATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAAT
TTAGTCCTCCAAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTAA
ATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAA
TTTAAAATTATTTCG
Found at i:15545890 original size:418 final size:415
Alignment explanation
Indices: 15545112--15546225 Score: 1764
Period size: 418 Copynumber: 2.6 Consensus size: 415
15545102 CATATTTGAA
* *
15545112 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTTAATTTAGTCC
1 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAGTTTAGTCC
*
15545177 TCCACATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTATTAATTGGCC
66 TCCA-ATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTTAATTGGCC
* * *
15545242 CATAATTTTTAAATGAGTATAATTTAGTACATTTTTGTATTAATTTCAACCTCAAAATTTAAAAT
130 CATAATTTTTAAATG-G-GT-ATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAAT
* * * *
15545307 TATTTCGATTTGATCCCTTTTATATTGTTTAGTTTATTTAAATTTTTATTTGTAATTTTATATTT
192 TATTTCGATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTT
*
15545372 GTTCAATTTAGTCCTCTAAATTTTATTTACATCTTAAATTGACCCATACTTATTACTTATTTCTA
257 GTTCAATTTAGTCCTCCAAATTTTATTTACATCTTAAATTGACCCATACTTATTACTTATTTCTA
*
15545437 TTTTTAAATTGGCCCCTAACTTTTTAAATGGGTATAATTTAGTACCTTTTTGTATTAATTTCAAC
322 TTTTTAAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACCTTTTTGTATTAATTTCAAC
*
15545502 ATCATAATTTAAAATTATTTCGATTTAAT
387 ATCACAATTTAAAATTATTTCGATTTAAT
*
15545531 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTTTAATTTCATATTTGTTCAGTTTAGTCC
1 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAGTTTAGTCC
*
15545596 TCTAATTTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTTAAATTGGC
66 TCCAA-TTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTT-AATTGGC
* *
15545661 CCATAACTTTTTAAATGGGTATTTAGTACTTTTTTTTATTAATTTCAACATCACAATTTAAAATT
129 CCATAA-TTTTTAAATGGGTATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATT
*
15545726 ATTTCGATTTCATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTG
193 ATTTCGATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTG
* *
15545791 TTCAATTTAGTCCTCCAATTTTTATTTGCAT-TTGAAATTGACCCATACTTATTACTTATTTCTA
258 TTCAATTTAGTCCTCCAAATTTTATTTACATCTT-AAATTGACCCATACTTATTACTTATTTCTA
*
15545855 TTTTTAAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAAC
322 TTTTTAAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACCTTTTTGTATTAATTTCAAC
*
15545920 ATCACAATTTAAAATTATTTCGATTTGAT
387 ATCACAATTTAAAATTATTTCGATTTAAT
15545949 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTC-GATTTAGTC
1 CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAG-TTTAGTC
* * * *
15546013 CTCCAAATTTTATTTGCATCTGAAATTGATCCATACTTTTTACTTAATTCTATTTTTTAATTGGC
65 CTCC-AATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTTAATTGGC
*
15546078 CAATAAATTTTTAAATGGGTATACTTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAA
129 CCAT-AATTTTTAAATGGG--TA-TTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAA
* *
15546143 ATTATTTTGATTTGATCCCTCATCAATGTGTGTAGTTTAATTTATTTAAATTTTTATTTGTAATT
190 ATTATTTCGATTTGATCCCT--T---T-TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATT
*
15546208 TCATATTTTTTCAATTTA
249 TCATATTTGTTCAATTTA
15546226 ATTCTTAAAT
Statistics
Matches: 644, Mismatches: 35, Indels: 25
0.91 0.05 0.04
Matches are distributed among these distances:
417 25 0.04
418 363 0.56
419 120 0.19
420 71 0.11
421 10 0.02
422 1 0.00
425 1 0.00
426 53 0.08
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (415 bp):
CCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAGTTTAGTCC
TCCAATTTTATTTGCATATGAAATTGACCCATACTTATTACTTATTTCTATTTTTTAATTGGCCC
ATAATTTTTAAATGGGTATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATT
TCGATTTGATCCCTTTTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTC
AATTTAGTCCTCCAAATTTTATTTACATCTTAAATTGACCCATACTTATTACTTATTTCTATTTT
TAAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACCTTTTTGTATTAATTTCAACATCA
CAATTTAAAATTATTTCGATTTAAT
Found at i:15551719 original size:2 final size:2
Alignment explanation
Indices: 15551714--15551741 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15551704 GTGTTGTGTG
15551714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15551742 GACCATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15552219 original size:31 final size:31
Alignment explanation
Indices: 15552176--15552328 Score: 261
Period size: 31 Copynumber: 4.9 Consensus size: 31
15552166 GAGTCAAGGG
* *
15552176 TTACTTATGTTCTTCGGGACATATGAACAGT
1 TTACCTATGTTCTTCGGGACATATGGACAGT
*
15552207 TTACCTATGTTCTTCGGGGCATATGGACAGT
1 TTACCTATGTTCTTCGGGACATATGGACAGT
15552238 TTACCTATGTTCTTCGGGACATATGGACAGT
1 TTACCTATGTTCTTCGGGACATATGGACAGT
*
15552269 TTACCTATGTTCTTCGGGACATATGGACAAT
1 TTACCTATGTTCTTCGGGACATATGGACAGT
*
15552300 TTACCTATGTTCTTCGGAACATATGGACA
1 TTACCTATGTTCTTCGGGACATATGGACA
15552329 TATTATTATA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 116 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACAGT
Found at i:15556805 original size:34 final size:32
Alignment explanation
Indices: 15556743--15556812 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
15556733 ACCTTACAAC
* *
15556743 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
15556775 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
15556809 TCCC
1 TCCC
15556813 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:15557210 original size:20 final size:20
Alignment explanation
Indices: 15557184--15557250 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
15557174 TTGGTACATG
*
15557184 GATGCACAACAGGATGCATC
1 GATGCACAGCAGGATGCATC
* *
15557204 AATGCACGGCAGGATGCATC
1 GATGCACAGCAGGATGCATC
15557224 GATGCACAGCAGGATGCATC
1 GATGCACAGCAGGATGCATC
15557244 GATGCAC
1 GATGCAC
15557251 TAATTACATT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.25, G:0.28, T:0.15
Consensus pattern (20 bp):
GATGCACAGCAGGATGCATC
Found at i:15557338 original size:21 final size:21
Alignment explanation
Indices: 15557270--15557369 Score: 116
Period size: 21 Copynumber: 4.7 Consensus size: 21
15557260 TCGAAATGGA
*
15557270 GTGCATGGATGCACTACAT--G
1 GTGCATGGATGCACTGC-TGGG
15557290 GTGCATGGATGCACTAG-TGGCAG
1 GTGCATGGATGCACT-GCTGG--G
*
15557313 GTGCATCGATGCACTGCTGGG
1 GTGCATGGATGCACTGCTGGG
*
15557334 GTGCATGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCTGGG
15557355 GTGCATGGATGCACT
1 GTGCATGGATGCACT
15557370 TTGACACCTT
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.01
20 15 0.21
21 35 0.50
22 1 0.01
23 18 0.26
ACGTcount: A:0.20, C:0.20, G:0.37, T:0.23
Consensus pattern (21 bp):
GTGCATGGATGCACTGCTGGG
Found at i:15557616 original size:21 final size:21
Alignment explanation
Indices: 15557592--15557631 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15557582 ATATTTAATG
*
15557592 AAAAAGATTTCAATTGTTAAC
1 AAAAAGATATCAATTGTTAAC
*
15557613 AAAATGATATCAATTGTTA
1 AAAAAGATATCAATTGTTA
15557632 CCAATTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.35
Consensus pattern (21 bp):
AAAAAGATATCAATTGTTAAC
Found at i:15566805 original size:29 final size:29
Alignment explanation
Indices: 15566765--15566822 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
15566755 ATGTACTATG
15566765 ATGGAGCCTTGTATACTAGTTATAACTCT
1 ATGGAGCCTTGTATACTAGTTATAACTCT
15566794 ATGGAGCCTTGTATACTAGTTATAACTCT
1 ATGGAGCCTTGTATACTAGTTATAACTCT
15566823 TACTTTAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (29 bp):
ATGGAGCCTTGTATACTAGTTATAACTCT
Found at i:15571382 original size:23 final size:23
Alignment explanation
Indices: 15571337--15571383 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15571327 AACGTAATTC
*
15571337 AATCAAAACACAATAATTTGAAA
1 AATCAAAACAAAATAATTTGAAA
*
15571360 AATCAAAA-AAAATTATTTCGAAA
1 AATCAAAACAAAATAATTT-GAAA
15571383 A
1 A
15571384 TTTCAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.62, C:0.11, G:0.04, T:0.23
Consensus pattern (23 bp):
AATCAAAACAAAATAATTTGAAA
Found at i:15571783 original size:19 final size:19
Alignment explanation
Indices: 15571756--15571821 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
15571746 AAAACCAGAA
* *
15571756 CCCCAAGGGGGTATCGATT
1 CCCCTAGGGGGAATCGATT
*
15571775 CCCCTAGGGGGAATCGGTT
1 CCCCTAGGGGGAATCGATT
*
15571794 CCCCTTCAAAGGGGGAATCGGTT
1 CCCC-T---AGGGGGAATCGATT
15571817 CCCCT
1 CCCCT
15571822 TCAAAGGGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
19 20 0.50
20 1 0.03
22 1 0.03
23 18 0.45
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (19 bp):
CCCCTAGGGGGAATCGATT
Found at i:15571810 original size:23 final size:23
Alignment explanation
Indices: 15571780--15571853 Score: 132
Period size: 23 Copynumber: 3.3 Consensus size: 23
15571770 CGATTCCCCT
15571780 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
15571803 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
*
15571826 AGGGGGAATCGGTTCCTCTTC-A
1 AGGGGGAATCGGTTCCCCTTCAA
15571848 AGGGGG
1 AGGGGG
15571854 TACGATTCCC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 7 0.14
23 43 0.86
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (23 bp):
AGGGGGAATCGGTTCCCCTTCAA
Found at i:15575633 original size:22 final size:21
Alignment explanation
Indices: 15575591--15575630 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15575581 GAGTTTATTT
*
15575591 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
15575612 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
15575631 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:15583835 original size:5 final size:5
Alignment explanation
Indices: 15583825--15583851 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15583815 TATATATGTA
15583825 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
15583852 TAGATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:15583860 original size:15 final size:15
Alignment explanation
Indices: 15583825--15583863 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
15583815 TATATATGTA
*
15583825 AAAATAAAATAAAAT
1 AAAATAAAATAAAAG
*
15583840 AAAATAAAATAATAG
1 AAAATAAAATAAAAG
*
15583855 ATAATAAAA
1 AAAATAAAA
15583864 CAAACAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAATAAAATAAAAG
Found at i:15584941 original size:2 final size:2
Alignment explanation
Indices: 15584934--15584980 Score: 57
Period size: 2 Copynumber: 25.0 Consensus size: 2
15584924 ATAAATAAAT
15584934 TA TA TA TA TA TA T- TA TA -A TA TGA TA -A TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
15584974 TA -A TA TA
1 TA TA TA TA
15584981 ACATTAGAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
1 4 0.10
2 34 0.85
3 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:15594434 original size:23 final size:23
Alignment explanation
Indices: 15594403--15594475 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
15594393 ATAGGTAAAA
*
15594403 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
15594426 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAGCGCTT
15594449 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
15594472 ATAT
1 ATAT
15594476 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:15594862 original size:22 final size:21
Alignment explanation
Indices: 15594832--15594876 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
15594822 ATTACATAAC
15594832 TTTAAAAAAAGTATCGACCATT
1 TTTAAAAAAAGTATCGA-CATT
* *
15594854 TTTATAAAAAGTATGGACATT
1 TTTAAAAAAAGTATCGACATT
15594875 TT
1 TT
15594877 CAATATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (21 bp):
TTTAAAAAAAGTATCGACATT
Found at i:15594925 original size:23 final size:23
Alignment explanation
Indices: 15594894--15594966 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
15594884 ATAGGTAAAA
*
15594894 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* ** *
15594917 ATATAATGTAATATGTAATGTTT
1 ATATAATGTAATAGGTAGCGCTT
15594940 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
15594963 ATAT
1 ATAT
15594967 TGTAAAGTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:15595412 original size:23 final size:23
Alignment explanation
Indices: 15595381--15595453 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
15595371 ATAGGTAAAA
*
15595381 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
15595404 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAGCGCTT
15595427 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
15595450 ATAT
1 ATAT
15595454 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:15595471 original size:487 final size:489
Alignment explanation
Indices: 15594179--15595989 Score: 3348
Period size: 487 Copynumber: 3.7 Consensus size: 489
15594169 TGTGGAAAAC
*
15594179 ATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTAT-AAA-AT
1 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
*
15594242 CAAAACAATC--A-AATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGG-GGAAAACAT
66 CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACAT
*
15594303 GAAACACTATTA-AAAAAATTGAAACA-AAATTACATAACTTTAAAAAAAGTATCGATCTTTTTT
131 GAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
15594366 ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
196 ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
15594431 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
261 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
*
15594496 TATAAAAGTGTCCATACTTTTTTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAG
326 TATAAAAGTGTCCATAC-TTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAG
*
15594561 TTTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGATATATATT
390 TTTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATATT
*
15594626 ATTATTAAATTAAAAACAATAAACATATATATTAC
455 ATTATTAAATTAAAAACAATAAACATATATATTAT
*
15594661 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTGTATAAAATAT
1 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
15594726 CAAAACAATCAAATAATTTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACA
66 CAAAACAATCAAATAA-TTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACA
*
15594791 TGAAACACTATTAGAAAAAATTGAAATATAAATTACATAACTTTAAAAAAAGTATCGA-CCATTT
130 TGAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCC-TTT
*
15594855 TTATAAAAAGTATGGACATTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
194 TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
* * *
15594920 TAATGTAATATGTAATGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATATGTCCTT
259 TAATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTT
15594985 TTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGA
324 TTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGA
15595050 GTTTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATAT
389 GTTTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATAT
15595115 TATTATTAAATTAAAAACAATAAACATATATATTAT
454 TATTATTAAATTAAAAACAATAAACATATATATTAT
15595151 ATATTTATTATTATCTTTGGTTAATATTGTTAAA-TTAAATTCTAAATAATATTTTATAAAATAT
1 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
*
15595215 CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTGTAGGTGGAAAACAT
66 CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACAT
15595280 GAAACACTATTAG-AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
131 GAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
15595344 ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
196 ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
15595409 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
261 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
15595474 TATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGT
326 TATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGT
15595539 TTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATATTA
391 TTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATATTA
15595604 TTATTAAATTAAAAACAATAAACATATATATTAT
456 TTATTAAATTAAAAACAATAAACATATATATTAT
15595638 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
1 ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
*
15595703 CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTGTAGGTGGAAAACAT
66 CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACAT
15595768 GAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
131 GAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
*
15595833 AT-AAAA--A-GGACACTTTCAATATAATAGGT-AAAATATGATGTAATAGGTAGTGCTTATATA
196 ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
15595893 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
261 ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
15595958 TATAAAAGTGTCCATACTTTTTTCACTGTGGA
326 TATAAAAGTGTCCATACTTTTTTCACTGTGGA
15595990 TAATTAATTC
Statistics
Matches: 1296, Mismatches: 20, Indels: 24
0.97 0.01 0.02
Matches are distributed among these distances:
482 56 0.04
483 3 0.00
484 139 0.11
485 22 0.02
486 2 0.00
487 373 0.29
488 213 0.16
489 119 0.09
490 192 0.15
491 177 0.14
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (489 bp):
ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATAT
CAAAACAATCAAATAATTTTTTGTGTATATGAAATTATTAAATTAATATTATAGGTGGAAAACAT
GAAACACTATTAGAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTT
ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
ATGTAATAGGTAACGTTTATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCTGTCCTTTT
TATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGT
TTTAAGATATCAATTTAGTAATTATAGAGCTTAATGATTTATTTTTTATGTTACGGTATATATTA
TTATTAAATTAAAAACAATAAACATATATATTAT
Found at i:15595891 original size:23 final size:23
Alignment explanation
Indices: 15595865--15595937 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
15595855 AATAGGTAAA
* *
15595865 ATATGATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
15595888 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAGCGCTT
15595911 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
15595934 ATAT
1 ATAT
15595938 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:15596336 original size:20 final size:20
Alignment explanation
Indices: 15596299--15596376 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
15596289 GTATCGATCC
* * *
15596299 AAAATGATATACCAGGTA-A
1 AAAATGATAAAACTGGTATA
* *
15596318 AAATATGATAAAACCGGTATC
1 AAA-ATGATAAAACTGGTATA
*
15596339 AAAATGATAAAACTGGTATC
1 AAAATGATAAAACTGGTATA
15596359 AAAATGATAAAACTGGTA
1 AAAATGATAAAACTGGTA
15596377 AAACGATACC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
19 3 0.06
20 46 0.88
21 3 0.06
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (20 bp):
AAAATGATAAAACTGGTATA
Found at i:15598486 original size:21 final size:21
Alignment explanation
Indices: 15598456--15598520 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
15598446 AAAGACATCA
*
15598456 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
*
15598477 AGAGTTGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
15598498 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
15598519 AG
1 AG
15598521 GCATAAGGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.42, C:0.09, G:0.31, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:15598599 original size:32 final size:32
Alignment explanation
Indices: 15598558--15598618 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
15598548 AGATGGAGTG
* *
15598558 GTGAAAGAAGTAGAGGTGTTGAGGGGTGAAGT
1 GTGAAAGAAGTAGAGGAGTTAAGGGGTGAAGT
* *
15598590 GTGAAAGAAGTTGGGGAGTTAAGGGGTGA
1 GTGAAAGAAGTAGAGGAGTTAAGGGGTGA
15598619 TATTAAGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.48, T:0.21
Consensus pattern (32 bp):
GTGAAAGAAGTAGAGGAGTTAAGGGGTGAAGT
Found at i:15600331 original size:19 final size:19
Alignment explanation
Indices: 15600307--15600355 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
15600297 AATGTAGGGT
15600307 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
15600326 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
15600345 TAATTTTGTAT
1 TAATTTTGTAT
15600356 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:15600931 original size:200 final size:200
Alignment explanation
Indices: 15600589--15601682 Score: 1955
Period size: 200 Copynumber: 5.5 Consensus size: 200
15600579 AATTTACAAT
*
15600589 ATGGCAAACAGGGTGAAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15600653 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
*
15600718 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
15600783 AATGA
196 AATGA
15600788 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15600853 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
15600918 ATGAGAGAATAGGTCTAAAAAATGTATCGACACTTGTGTAGTTTGTGTCGATAATTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
15600983 AATGA
196 AATGA
15600988 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15601053 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
15601118 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
15601183 AATGA
196 AATGA
*
15601188 ATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15601253 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
*
15601318 ATGAGAGAATAGGTCTAAATAATGTATCGGCAC----------T-TGT--ATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
15601370 AATGA
196 AATGA
*
15601375 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15601440 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* * *
15601505 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCTAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
15601570 AATGA
196 AATGA
15601575 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
15601640 CGAAACTCAAAAGTATAATGTAATAGGTAATTTTTAAATCTAA
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAA
15601683 CCATAAGATG
Statistics
Matches: 859, Mismatches: 22, Indels: 27
0.95 0.02 0.03
Matches are distributed among these distances:
187 178 0.21
189 3 0.00
190 1 0.00
197 1 0.00
198 3 0.00
199 40 0.05
200 633 0.74
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:15601494 original size:187 final size:189
Alignment explanation
Indices: 15601168--15601682 Score: 836
Period size: 187 Copynumber: 2.7 Consensus size: 189
15601158 GTTTGTGTCG
* *
15601168 ATATTTGTGGGCCAGAATGAATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAA
1 ATATTTTTGGGCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAA
15601233 AGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATC
66 AGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATC
*
15601298 GGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGGCAC-T-TGT
131 GGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGT
*
15601355 ATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAA
1 ATATTTTTGGGCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAA
*
15601420 AGTGTCAATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATC
66 AGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATC
15601485 GGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGT
131 GGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGT
*
15601544 AGTTTGTGTCGATATTTGTGGGCTAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATC
1 A-------T--AT-TTT-TGGGCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATC
* *
15601609 CATATATAAAAAGTGTCGATCCCATAAACATCGAAACTCAAAAGTATAATGTAATAGGTAATTTT
55 CATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTT
*
15601674 TAAATCTAA
120 TCAATCTAA
15601683 CCATAAGATG
Statistics
Matches: 304, Mismatches: 11, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
187 178 0.59
188 1 0.00
189 4 0.01
196 1 0.00
198 2 0.01
199 3 0.01
200 115 0.38
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (189 bp):
ATATTTTTGGGCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAA
AGTGTCGATCCCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATC
GGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGT
Found at i:15601554 original size:387 final size:392
Alignment explanation
Indices: 15600589--15601682 Score: 1966
Period size: 387 Copynumber: 2.8 Consensus size: 392
15600579 AATTTACAAT
*
15600589 ATGGCAAACAGGGTGAAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15600653 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* * *
15600718 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
15600783 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
15600848 AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
261 AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
15600913 GTTTTATGAGAGAATAGGTCTAAAAAATGTATCGACACTTGTGTAGTTTGTGTCGATAATTTTGG
326 GTTTTATGAGAGAATAGGTCTAAAAAATGTATCGACACTTGTGTA-----T-TC-AT-ATTTTGG
15600978 TCCAGAATGA
383 TCCAGAATGA
15600988 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15601053 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
15601118 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
*
15601183 AATGAATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
15601248 AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
261 AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
* *
15601313 GTTTTATGAGAGAATAGGTCTAAATAATGTATCGGCAC-T-TGTA-T-AT-TTTTGGTCCAGAAT
326 GTTTTATGAGAGAATAGGTCTAAAAAATGTATCGACACTTGTGTATTCATATTTTGGTCCAGAAT
15601373 GA
391 GA
*
15601375 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
15601440 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
*
15601505 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCTAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
15601570 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
196 AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
* * *
15601635 AACATCGAAACTCAAAAGTATAATGTAATAGGTAATTTTTAAATCTAA
261 AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAA
15601683 CCATAAGATG
Statistics
Matches: 681, Mismatches: 13, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
387 318 0.47
389 2 0.00
391 1 0.00
398 4 0.01
399 41 0.06
400 315 0.46
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (392 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTGTGTAGTTTGTGTCGATATTTGTGGGCCAG
AATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATA
AACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAATCGGTACAAGTATACCG
GTTTTATGAGAGAATAGGTCTAAAAAATGTATCGACACTTGTGTATTCATATTTTGGTCCAGAAT
GA
Found at i:15603442 original size:183 final size:184
Alignment explanation
Indices: 15602552--15603595 Score: 2013
Period size: 184 Copynumber: 5.7 Consensus size: 184
15602542 CATAAAGTGA
15602552 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTC-AAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
15602616 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
*
15602681 AGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
131 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
*
15602735 CGGTACTTTATGTCCAGAATAGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
*
15602800 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAATCGGTATAAATATACC
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
*
15602865 GGTTTTATGAGCGAATAAGTCTACAACCTATATCGACACTTTTTAATATTGTGT
131 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
15602919 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
15602984 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
*
15603049 GGTTTTATGAGCGAATAGGTCTACAAACTATATCGACACTTTTTAATATTGTGT
131 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
15603103 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
*
15603168 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACTGGTATAAATATACC
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
15603233 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
131 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
15603287 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTC-AAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
15603351 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
15603416 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
131 GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
15603470 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTC-AAAAAGTGTCGACATTT
1 CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
15603534 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATAT
66 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATAT
15603596 TGTTTCGCTA
Statistics
Matches: 849, Mismatches: 11, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
183 307 0.36
184 542 0.64
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (184 bp):
CGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAAGTGTCGACATTT
ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACC
GGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGT
Found at i:15610853 original size:32 final size:32
Alignment explanation
Indices: 15610817--15610878 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
15610807 GGATGTTAGT
15610817 TTTGTGTGTTTTCAAACTGAATTGAGTTGGGG
1 TTTGTGTGTTTTCAAACTGAATTGAGTTGGGG
**
15610849 TTTGTGTGTTTTCATGCTGAATTGAGTTGG
1 TTTGTGTGTTTTCAAACTGAATTGAGTTGG
15610879 TTGGTGTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.16, C:0.06, G:0.31, T:0.47
Consensus pattern (32 bp):
TTTGTGTGTTTTCAAACTGAATTGAGTTGGGG
Found at i:15615032 original size:20 final size:20
Alignment explanation
Indices: 15614996--15615033 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15614986 ATCCTATTCC
**
15614996 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
15615016 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
15615034 GTGAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:15621610 original size:14 final size:15
Alignment explanation
Indices: 15621586--15621614 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15621576 GAGCGAAAAG
15621586 AAAAGGAAAAAGTTT
1 AAAAGGAAAAAGTTT
15621601 AAAA-GAAAAAGTTT
1 AAAAGGAAAAAGTTT
15621615 TGGAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (15 bp):
AAAAGGAAAAAGTTT
Found at i:15622601 original size:31 final size:31
Alignment explanation
Indices: 15622558--15622632 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
15622548 CGAGGCTAGG
*
15622558 GGGCTTACCCAAGAAAGATCTCAGGGCCGCA
1 GGGCCTACCCAAGAAAGATCTCAGGGCCGCA
* *
15622589 GGGCCTACCCAAGAAAGATCTCGGGGCCTCA
1 GGGCCTACCCAAGAAAGATCTCAGGGCCGCA
* *
15622620 GAGCCTACTCAAG
1 GGGCCTACCCAAG
15622633 GGTCGCCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.31, G:0.28, T:0.13
Consensus pattern (31 bp):
GGGCCTACCCAAGAAAGATCTCAGGGCCGCA
Found at i:15623390 original size:31 final size:31
Alignment explanation
Indices: 15623354--15623412 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
15623344 AACTTAAAAA
* *
15623354 AGTTTTGCAATACTGAAATTTAAATAATTTT
1 AGTTTTACAATAATGAAATTTAAATAATTTT
*
15623385 AGTTTTATAATAATGAAATTTAAATAAT
1 AGTTTTACAATAATGAAATTTAAATAAT
15623413 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATAATGAAATTTAAATAATTTT
Found at i:15623461 original size:22 final size:22
Alignment explanation
Indices: 15623436--15623875 Score: 542
Period size: 22 Copynumber: 19.6 Consensus size: 22
15623426 ATAATAAATT
15623436 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
15623458 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
15623480 TTTTAAAATAAAT-TTTTCATA
1 TTTTAAAATAAATCAATCCATA
*
15623501 TTTTACAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
15623523 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
15623545 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *** *
15623567 TTTTAAAATAATTTTTTTCATA
1 TTTTAAAATAAATCAATCCATA
*** *** *
15623589 TTTT-AAATTTTTTTTTTCATA
1 TTTTAAAATAAATCAATCCATA
15623610 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
15623632 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *
15623654 TTTTAAAATAAATCATTTCATA
1 TTTTAAAATAAATCAATCCATA
15623676 TTTTAAAATAAATAAATCAATCCATATTCCATA
1 TTTT---A-AAATAAATCAATCC-------ATA
*
15623709 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
15623731 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
15623753 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
15623775 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
15623797 TTTTAAAATAAATTTATCCATA
1 TTTTAAAATAAATCAATCCATA
*
15623819 TTTTAAAATAAATCAATCTATA
1 TTTTAAAATAAATCAATCCATA
15623841 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
15623863 TTTTAAAATAAAT
1 TTTTAAAATAAAT
15623876 TTTAAAATAA
Statistics
Matches: 365, Mismatches: 40, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
21 36 0.10
22 295 0.81
25 1 0.00
26 12 0.03
29 13 0.04
30 1 0.00
33 7 0.02
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:15623527 original size:87 final size:87
Alignment explanation
Indices: 15623436--15623875 Score: 585
Period size: 87 Copynumber: 4.9 Consensus size: 87
15623426 ATAATAAATT
15623436 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTTTCATA
1 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTTTCATA
*
15623501 TTTTACAATAAATCAATCCATA
66 TTTTAAAATAAATCAATCCATA
*
15623523 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAATTTTTTTCAT
1 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAA-ATTTTTCAT
*** *** *
15623588 ATTTT-AAATTTTTTTTTTCATA
65 ATTTTAAAATAAATCAATCCATA
*
15623610 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCATTTCAT
1 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAT-TTTTCAT
15623675 ATTTTAAAATAAATAAATCAATCCATATTCCATA
65 ATTTT---A-AAAT--A--AAT-CA-A-TCCATA
*
15623709 TTTTAAAATAAATCAATTCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTTTCCAT
1 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTTT-CAT
15623774 ATTTTAAAATAAATCAATCCATA
65 ATTTTAAAATAAATCAATCCATA
** * ** *
15623797 TTTTAAAATAAATTTATCCATATTTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCAT
1 TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAAT-TTTTCAT
15623862 ATTTTAAAATAAAT
65 ATTTTAAAATAAAT
15623876 TTTAAAATAA
Statistics
Matches: 310, Mismatches: 27, Indels: 31
0.84 0.07 0.08
Matches are distributed among these distances:
86 1 0.00
87 130 0.42
88 89 0.29
89 2 0.01
90 2 0.01
91 3 0.01
92 4 0.01
93 1 0.00
95 4 0.01
96 2 0.01
98 3 0.01
99 69 0.22
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (87 bp):
TTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATTTTTCATA
TTTTAAAATAAATCAATCCATA
Found at i:15623879 original size:12 final size:12
Alignment explanation
Indices: 15623862--15623901 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
15623852 ATCAATCCAT
15623862 ATTTTAAAATAA
1 ATTTTAAAATAA
15623874 ATTTTAAAATAA
1 ATTTTAAAATAA
15623886 A-TTT-AAAT-A
1 ATTTTAAAATAA
15623895 ATTTTAA
1 ATTTTAA
15623902 TTTCTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.08
10 7 0.27
11 4 0.15
12 13 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATTTTAAAATAA
Found at i:15634928 original size:25 final size:22
Alignment explanation
Indices: 15634890--15634945 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
15634880 TTTTATATTT
*
15634890 TTATAAAAAAATATATGGAATAA
1 TTATAAAAAAATATATAGAAT-A
* *
15634913 TTATAAAAAAGTATATTTATAATA
1 TTATAAAAAA--ATATATAGAATA
15634937 TTATAAAAA
1 TTATAAAAA
15634946 TATGTATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.36
24 10 0.36
25 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (22 bp):
TTATAAAAAAATATATAGAATA
Found at i:15635152 original size:23 final size:22
Alignment explanation
Indices: 15635115--15635170 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 22
15635105 AGATAATTTA
*
15635115 AAAATAATATTATTTTAAATAAAT
1 AAAA-AATATGATTTTAAA-AAAT
*
15635139 AAAAAATATGATTTTATAAAAT
1 AAAAAATATGATTTTAAAAAAT
15635161 AAATAAATAT
1 AAA-AAATAT
15635171 TTTCATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.24
23 18 0.62
24 4 0.14
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAAAATATGATTTTAAAAAAT
Found at i:15635178 original size:21 final size:21
Alignment explanation
Indices: 15635135--15635178 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
15635125 TATTTTAAAT
*
15635135 AAATAAAAAATATGATTTTATA
1 AAATAAAAAATAT-ATTTCATA
15635157 AAATAAATAAATAT-TTTCATA
1 AAATAAA-AAATATATTTCATA
15635178 A
1 A
15635179 TATTATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 7 0.35
23 6 0.30
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATAAAAAATATATTTCATA
Found at i:15636297 original size:33 final size:33
Alignment explanation
Indices: 15636260--15636323 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
15636250 TTATGTTCGT
*
15636260 TTACGTTCATTTATTGTGTTCGTTTACGTTCAC
1 TTACGTTCATTTATTGTATTCGTTTACGTTCAC
* *
15636293 TTACGTTCGTTTATTGTATTCGTTTATGTTC
1 TTACGTTCATTTATTGTATTCGTTTACGTTC
15636324 GTATACATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.16, T:0.55
Consensus pattern (33 bp):
TTACGTTCATTTATTGTATTCGTTTACGTTCAC
Found at i:15637204 original size:19 final size:18
Alignment explanation
Indices: 15637182--15637270 Score: 65
Period size: 19 Copynumber: 4.6 Consensus size: 18
15637172 ATATTTATAA
15637182 AATTTTAAATTACTTATTT
1 AATTTTAAATTA-TTATTT
15637201 AATTTTTAAAATCATATTATTT
1 AA-TTTT-AAAT--TATTATTT
*
15637223 ATTTATTTGAAA-TATTA-TT
1 A---ATTTTAAATTATTATTT
*
15637242 ACTTTTAAATTATATATTT
1 AATTTTAAATTAT-TATTT
15637261 AATTTTAAAT
1 AATTTTAAAT
15637271 AATATTATAC
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
16 6 0.11
17 3 0.05
18 2 0.04
19 16 0.29
20 9 0.16
21 4 0.07
22 7 0.12
23 5 0.09
24 3 0.05
25 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.56
Consensus pattern (18 bp):
AATTTTAAATTATTATTT
Found at i:15637241 original size:23 final size:23
Alignment explanation
Indices: 15637190--15637242 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
15637180 AAAATTTTAA
15637190 ATTACTTATTTAATTTTTAAAATC
1 ATTA-TTATTTAATTTTTAAAATC
* *
15637214 A-TATTATTTATTTATTTGAAAT-
1 ATTATTATTTAATT-TTTAAAATC
15637236 ATTATTA
1 ATTATTA
15637243 CTTTTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 10 0.40
23 14 0.56
24 1 0.04
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTATTATTTAATTTTTAAAATC
Found at i:15637419 original size:20 final size:20
Alignment explanation
Indices: 15637396--15637434 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15637386 AACTAAATCA
15637396 ATATTTTTATAAT-ATTATAC
1 ATATTTTT-TAATAATTATAC
15637416 ATATTTTTTAATAATTATA
1 ATATTTTTTAATAATTATA
15637435 TTATATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATTTTTTAATAATTATAC
Found at i:15637457 original size:22 final size:23
Alignment explanation
Indices: 15637406--15637469 Score: 55
Period size: 25 Copynumber: 2.8 Consensus size: 23
15637396 ATATTTTTAT
*
15637406 AATATTATACATATTTTT-TAATA
1 AATATTATATA-ATTTTTATAATA
15637429 ATTATATTATATAATTTTTATAA-A
1 A--ATATTATATAATTTTTATAATA
15637453 AATA-TAT-TAATTATTTA
1 AATATTATATAATT-TTTA
15637470 ATTATTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 5 0.14
21 7 0.19
22 3 0.08
23 1 0.03
24 8 0.22
25 12 0.33
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
AATATTATATAATTTTTATAATA
Found at i:15639955 original size:3 final size:3
Alignment explanation
Indices: 15639937--15639977 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
15639927 TTGTAACAAT
*
15639937 TAA TTA TAA T-A TAA TAA TAA TAA TATA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA
15639978 TTATAATACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:15639966 original size:16 final size:16
Alignment explanation
Indices: 15639945--15639985 Score: 73
Period size: 16 Copynumber: 2.5 Consensus size: 16
15639935 ATTAATTATA
15639945 ATATAATAATAATAAT
1 ATATAATAATAATAAT
15639961 ATATAATAATAATAAT
1 ATATAATAATAATAAT
15639977 ATTATAATA
1 A-TATAATA
15639986 CTTATAACGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATAATAATAAT
Found at i:15639990 original size:9 final size:8
Alignment explanation
Indices: 15639939--15639992 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
15639929 GTAACAATTA
15639939 ATTATAAT
1 ATTATAAT
*
15639947 ATAATAAT
1 ATTATAAT
15639955 A--ATAAT
1 ATTATAAT
15639961 A-TATAAT
1 ATTATAAT
*
15639968 AATAATAAT
1 -ATTATAAT
15639977 ATTATAAT
1 ATTATAAT
15639985 ACTTATAA
1 A-TTATAA
15639993 CGAATTGGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
6 6 0.15
7 5 0.13
8 17 0.44
9 11 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (8 bp):
ATTATAAT
Found at i:15640218 original size:36 final size:36
Alignment explanation
Indices: 15640171--15640337 Score: 244
Period size: 36 Copynumber: 4.6 Consensus size: 36
15640161 TATGTTCTTT
* *
15640171 CTTCATTACTCTTTTGTGAAGGCTGGATTTGCATTG
1 CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTG
**
15640207 CTTCACTACTCTTTTGTGAAGGCTGGTTTTGCATTG
1 CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTG
* *
15640243 TTTCACTACTCTTTTGTGAAGGCTTGAATTTTCATTG
1 CTTCACTACTCTTTTGTGAAGGC-TGAATTTGCATTG
* **
15640280 CTTCACTACTCTTTTGAGAAGATTGAATTTGCATTG
1 CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTG
15640316 CTTCACTACTCTTTTGTGAAGG
1 CTTCACTACTCTTTTGTGAAGG
15640338 TGACAACTTT
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
36 88 0.75
37 29 0.25
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (36 bp):
CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTG
Found at i:15640295 original size:73 final size:72
Alignment explanation
Indices: 15640171--15640337 Score: 244
Period size: 73 Copynumber: 2.3 Consensus size: 72
15640161 TATGTTCTTT
* * * * **
15640171 CTTCATTACTCTTTTGTGAAGGCTGGATTTGCATTGCTTCACTACTCTTTTGTGAAGGCTGGTTT
1 CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTGCTTCACTACTCTTTTGAGAAGACTGAATT
15640236 TGCATTG
66 TGCATTG
* * *
15640243 TTTCACTACTCTTTTGTGAAGGCTTGAATTTTCATTGCTTCACTACTCTTTTGAGAAGATTGAAT
1 CTTCACTACTCTTTTGTGAAGGC-TGAATTTGCATTGCTTCACTACTCTTTTGAGAAGACTGAAT
15640308 TTGCATTG
65 TTGCATTG
15640316 CTTCACTACTCTTTTGTGAAGG
1 CTTCACTACTCTTTTGTGAAGG
15640338 TGACAACTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
72 21 0.25
73 63 0.75
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (72 bp):
CTTCACTACTCTTTTGTGAAGGCTGAATTTGCATTGCTTCACTACTCTTTTGAGAAGACTGAATT
TGCATTG
Found at i:15642278 original size:25 final size:25
Alignment explanation
Indices: 15642250--15642317 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 25
15642240 TTTTCTCATG
15642250 TTTTTTTTTCTTTTTTTCGAACAT-C
1 TTTTTTTTTCTTTTTTTCGAA-ATGC
* * *
15642275 TTTTTTTCCTCTTTTTTTTGAATTGC
1 TTTTTTT-TTCTTTTTTTCGAAATGC
*
15642301 TATTTTTTTCTTTTTTT
1 TTTTTTTTTCTTTTTTT
15642318 TTTCGATGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 17 0.47
26 19 0.53
ACGTcount: A:0.09, C:0.13, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTTTTTTTCTTTTTTTCGAAATGC
Found at i:15645225 original size:40 final size:40
Alignment explanation
Indices: 15645181--15645262 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
15645171 TGCAGGTTTA
15645181 TAATACACTTCGGTGTATATAGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATAGTGGGCACGACCTTATGTG
*
15645221 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATAGTGGGCACGACCTTATGTG
15645261 TA
1 TA
15645263 GCACTACGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATAGTGGGCACGACCTTATGTG
Found at i:15652721 original size:40 final size:40
Alignment explanation
Indices: 15652665--15652786 Score: 226
Period size: 40 Copynumber: 3.0 Consensus size: 40
15652655 TGCAGGTTTA
15652665 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
15652705 TAATACACTTCAGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
15652745 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATATG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
15652785 TA
1 TA
15652787 GCACTACGGT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:15658419 original size:93 final size:92
Alignment explanation
Indices: 15658256--15658437 Score: 292
Period size: 93 Copynumber: 2.0 Consensus size: 92
15658246 TGATTTGCAT
* * * *
15658256 TACTCCACTACTCTTCTGTGAAGGTTAAAATGACTGACTTGAAAAGAATTTGTTTCATTACTTTT
1 TACTCCACTACTCTTCTGTGAAGGTTAAAATGACAGACTTGAAAAGAATCTGTTTCACTACTCTT
15658321 CCGTGAAGACTAGATTCGAGGTTGGAA
66 CCGTGAAGACTAGATTCGAGGTTGGAA
* *
15658348 TACTTCACTACTCTTCTGTGAAGGTTGAAAATGACAGACTTGAGAAGAATCTGTTTCACTACTCT
1 TACTCCACTACTCTTCTGTGAAGGTT-AAAATGACAGACTTGAAAAGAATCTGTTTCACTACTCT
*
15658413 TCCGTGAAGACTAGATTTGAGGTTG
65 TCCGTGAAGACTAGATTCGAGGTTG
15658438 ATTTGTTTCC
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 25 0.30
93 57 0.70
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (92 bp):
TACTCCACTACTCTTCTGTGAAGGTTAAAATGACAGACTTGAAAAGAATCTGTTTCACTACTCTT
CCGTGAAGACTAGATTCGAGGTTGGAA
Found at i:15671344 original size:3 final size:3
Alignment explanation
Indices: 15671326--15671376 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
15671316 TTATAGCAAT
*
15671326 TAA TTA TAA T-A TAA TAA TAA TAA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
15671370 T-A TAA TA
1 TAA TAA TA
15671377 CTTATAACGA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 6 0.14
3 33 0.79
4 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:15671359 original size:21 final size:20
Alignment explanation
Indices: 15671326--15671376 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
15671316 TTATAGCAAT
*
15671326 TAATTATAATATAATAATAA
1 TAATAATAATATAATAATAA
15671346 TAATAATATATATAATAATAA
1 TAATAATA-ATATAATAATAA
15671367 TAAT-ATAATA
1 TAATAATAATA
15671377 CTTATAACGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 3 0.10
20 10 0.34
21 16 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAATAATAATATAATAATAA
Found at i:15674916 original size:2 final size:2
Alignment explanation
Indices: 15674903--15674935 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
15674893 AATAAGCATA
*
15674903 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15674936 AACGACAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:15677348 original size:106 final size:106
Alignment explanation
Indices: 15677219--15678188 Score: 1166
Period size: 106 Copynumber: 9.4 Consensus size: 106
15677209 GACCCATTCC
* * * * *
15677219 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* * *
15677284 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
15677325 GAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTAAAAATTGGAAATGGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* * *
15677390 CCAGCCGTCCCTTCATCGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
15677431 GAGTCCAATATCTTTCGCTGTGAAGTTGAGATTGGCTCTGAAACTGGGTAATGGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* * *
15677496 CCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTC-TTGTCTT
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTG-CGTTGTCTG
* * *
15677537 GAGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTCTGAAACTGGGTAATGGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* *
15677602 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** * * * *
15677643 GAGTCCAATATCCTTCATTATGAAGTTGAAATTGGCTCTGAAATTGAGG-AGTTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTG-GGAAATTGTTTATTGACA
* * * *
15677707 ACCAGCGGTCCCTTCATCGTGAAGTTGAACTTTCATTGTCTG
65 ACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
15677749 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
** * * * *
15677814 CCAGTGGTCCCTTCGTTGTGAAGTTGAACTTACGTTATCTT
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15677855 GAGTCCAATATCCTTCGCTATGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* *
15677920 CCAGCGGTCCCTTCGTCGTGAAGTTCAACTTGCGTTGTCTG
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15677961 GAGTCCAATATCCTTCG-T-T---G-TG-AA---G-T-TGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* *
15678014 CCAG-CGATCCCTTTGTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCCG-TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15678055 GAGTCCAATATCTTTCG-T-T---G-TG-AA---G-T-TGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
* *
15678108 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTG
66 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15678149 GAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
15678189 GGTAAAACCT
Statistics
Matches: 772, Mismatches: 74, Indels: 36
0.88 0.08 0.04
Matches are distributed among these distances:
93 1 0.00
94 164 0.21
95 3 0.00
96 2 0.00
99 3 0.00
100 4 0.01
101 3 0.00
104 2 0.00
105 5 0.01
106 583 0.76
107 2 0.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTATTGACAA
CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:15678054 original size:94 final size:94
Alignment explanation
Indices: 15677893--15678183 Score: 503
Period size: 94 Copynumber: 3.1 Consensus size: 94
15677883 AAATTGGCTC
* *
15677893 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTCAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
15677958 CTGGAGTCCAATATCCTTCGTTGTGAAGT
66 CTGGAGTCCAATATCCTTCGTTGTGAAGT
* *
15677987 TGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTTGTCGTGAAGTTGAACTTACGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
15678052 CTGGAGTCCAATATCTTTCGTTGTGAAGT
66 CTGGAGTCCAATATCCTTCGTTGTGAAGT
15678081 TGAAATTGGGAAATTGTTTATTGACAACCAGC-AGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGA-TCCCTTCGTCGTGAAGTTGAACTTGCGTTG
* *
15678145 CCTGGAGTCCAATATCCTTTGTTGTGAAGT
65 TCTGGAGTCCAATATCCTTCGTTGTGAAGT
15678175 TGAAATTGG
1 TGAAATTGG
15678184 CTCTGGGTAA
Statistics
Matches: 186, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
93 1 0.01
94 185 0.99
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (94 bp):
TGAAATTGGGAAATTGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCCTTCGTTGTGAAGT
Found at i:15678949 original size:6 final size:6
Alignment explanation
Indices: 15678933--15678980 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
15678923 ACCCACCTTA
*
15678933 TTTTC- TTTTCT TTTTCTT TTGTTCTT TTTTCT CTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTC-T TT-TTC-T TTTTCT TTTTCT TTTTCT TTTT
15678981 TCAATTTATG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
5 5 0.13
6 20 0.53
7 6 0.16
8 7 0.18
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:15678964 original size:21 final size:19
Alignment explanation
Indices: 15678938--15678982 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
15678928 CCTTATTTTC
*
15678938 TTTTCTTTTTCTTTTGTTCTT
1 TTTTCTCTTTC-TTT-TTCTT
15678959 TTTTCTCTTTCTTTTTCTT
1 TTTTCTCTTTCTTTTTCTT
15678978 TTTTC
1 TTTTC
15678983 AATTTATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.43
20 3 0.13
21 10 0.43
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTCTCTTTCTTTTTCTT
Found at i:15696357 original size:20 final size:19
Alignment explanation
Indices: 15696332--15696372 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15696322 TAGATGGTTC
*
15696332 TTTTTTTTTGTTGTGATGGG
1 TTTTTTGTTG-TGTGATGGG
*
15696352 TTTTTTGTTGTGTGATTGG
1 TTTTTTGTTGTGTGATGGG
15696371 TT
1 TT
15696373 ATGGCTCTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.05, C:0.00, G:0.29, T:0.66
Consensus pattern (19 bp):
TTTTTTGTTGTGTGATGGG
Found at i:15696830 original size:16 final size:16
Alignment explanation
Indices: 15696801--15696847 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
15696791 ACAAAATATC
*
15696801 AAAAAACGAA-AATAA
1 AAAAAACAAATAATAA
*
15696816 AAAAAACAATTAATAA
1 AAAAAACAAATAATAA
* *
15696832 AATAAATAAATAATAA
1 AAAAAACAAATAATAA
15696848 TAATAATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAAAACAAATAATAA
Found at i:15696856 original size:16 final size:16
Alignment explanation
Indices: 15696811--15696853 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
15696801 AAAAAACGAA
* * *
15696811 AATAAAAAAAACAATT
1 AATAAAATAAATAAAT
15696827 AATAAAATAAATAAAT
1 AATAAAATAAATAAAT
15696843 AATAATAATAA
1 AATAA-AATAA
15696854 TAATATACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAATAAATAAAT
Found at i:15696871 original size:35 final size:35
Alignment explanation
Indices: 15696832--15696901 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
15696822 CAATTAATAA
15696832 AATAA-ATAA-ATAATAATA-ATAATAATATACTATTT
1 AATAATATAATATAA-AATATATAAT-ATATA-TATTT
*
15696867 AATAATATAATATAAACTATATAATATATATATTT
1 AATAATATAATATAAAATATATAATATATATATTT
15696902 CAAAATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
35 10 0.32
36 12 0.39
37 9 0.29
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (35 bp):
AATAATATAATATAAAATATATAATATATATATTT
Found at i:15696930 original size:33 final size:35
Alignment explanation
Indices: 15696880--15697068 Score: 102
Period size: 35 Copynumber: 5.3 Consensus size: 35
15696870 AATATAATAT
* ** *
15696880 AAACTATATAATATATATATTTCAAAATTA-TTTTTA
1 AAACTATAT-AT-TATATATTTAAAAAAAAGTTTTCA
* *
15696916 AAA-TGTATATTATATTTTTAAAAAAAAGTTTTCA
1 AAACTATATATTATATATTTAAAAAAAAGTTTTCA
* * *
15696950 AAACTATATATTATATAGTTTAGAAAAATGATTT-A
1 AAACTATATATTATATA-TTTAAAAAAAAGTTTTCA
* * **
15696985 AAAATAT-TA-TATA-AGTTTTCAAAAAAATGTTTTTG
1 AAACTATATATTATATA--TTT-AAAAAAAAGTTTTCA
** * *
15697020 AAACTATATATTATATAATTTTTCAAAAATGTTTTTA
1 AAACTATATATTATAT-A-TTTAAAAAAAAGTTTTCA
*
15697057 ACACTATATATT
1 AAACTATATATT
15697069 TTCAAAATGT
Statistics
Matches: 122, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
32 1 0.01
33 20 0.16
34 23 0.19
35 28 0.23
36 18 0.15
37 27 0.22
38 4 0.03
39 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (35 bp):
AAACTATATATTATATATTTAAAAAAAAGTTTTCA
Found at i:15696965 original size:70 final size:69
Alignment explanation
Indices: 15696880--15697057 Score: 164
Period size: 70 Copynumber: 2.5 Consensus size: 69
15696870 AATATAATAT
* * *
15696880 AAACTATATAATATATATATTTCAAAATTATTTTTAAAAT-GTATATTATA-TTTTTAAAAAAAA
1 AAACTATATATTATATAT-TTTCAAAATTATTTTTAAAATATTATA-TA-AGTTTTCAAAAAAAA
15696943 GTTTTCA
63 GTTTTCA
** * * *
15696950 AAACTATATATTATATAGTTTAGAAAAATGA-TTTAAAAATATTATATAAGTTTTCAAAAAAATG
1 AAACTATATATTATATA-TTT-TCAAAATTATTTTTAAAATATTATATAAGTTTTCAAAAAAAAG
**
15697014 TTTTTG
64 TTTTCA
* *
15697020 AAACTATATATTATATAATTTTTCAAAAATGTTTTTAA
1 AAACTATATATTATAT-A-TTTTCAAAATTATTTTTAA
15697058 CACTATATAT
Statistics
Matches: 85, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
69 1 0.01
70 64 0.75
71 20 0.24
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (69 bp):
AAACTATATATTATATATTTTCAAAATTATTTTTAAAATATTATATAAGTTTTCAAAAAAAAGTT
TTCA
Found at i:15697106 original size:69 final size:67
Alignment explanation
Indices: 15697008--15697204 Score: 285
Period size: 69 Copynumber: 3.0 Consensus size: 67
15696998 AGTTTTCAAA
* *
15697008 AAAATGTTTTT--GAAACTAT-ATATTATATAATTTTTCAAAAATGTTTTTAACACTATATATTT
1 AAAATGTTTTTAAAAAACTATAATATTATATAATTTTTCAAAAATGTTTTTAAAACTATATATTT
15697070 TC
66 TC
* *
15697072 AAAATGTTTTTTTAAAAACTATACATATTATATAATGTTTCAAAAATGTTTTTAAAACTATATAT
1 AAAATG-TTTTTAAAAAACTATA-ATATTATATAATTTTTCAAAAATGTTTTTAAAACTATATAT
15697137 TTTC
64 TTTC
* *
15697141 AAAATGTTTTTAAAAAACTATATATATTATATAATTTTTC-AAAATGTTTTAAAAACCATATATT
1 AAAATGTTTTTAAAAAACTATA-ATATTATATAATTTTTCAAAAATGTTTTTAAAACTATATATT
15697205 ATATACTTTT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
64 6 0.05
65 5 0.04
67 29 0.24
68 31 0.26
69 49 0.41
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (67 bp):
AAAATGTTTTTAAAAAACTATAATATTATATAATTTTTCAAAAATGTTTTTAAAACTATATATTT
TC
Found at i:15697172 original size:38 final size:38
Alignment explanation
Indices: 15697130--15697248 Score: 124
Period size: 36 Copynumber: 3.2 Consensus size: 38
15697120 TTTTTAAAAC
15697130 TATATA-TTTTCAAAATGTTTTTAAAAAACTATATATAT
1 TATATATTTTTCAAAATG-TTTTAAAAAACTATATATAT
*
15697168 TATATAATTTTTCAAAATGTTTT-AAAAAC--CATATAT
1 TATAT-ATTTTTCAAAATGTTTTAAAAAACTATATATAT
* * *
15697204 TATATACTTTTTTAAAATGATTT--CAAACTATATATAT
1 TATATA-TTTTTCAAAATGTTTTAAAAAACTATATATAT
15697241 ATATATAT
1 -TATATAT
15697249 ATATATAATA
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
35 5 0.07
36 25 0.36
37 7 0.10
38 17 0.24
39 5 0.07
40 11 0.16
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.47
Consensus pattern (38 bp):
TATATATTTTTCAAAATGTTTTAAAAAACTATATATAT
Found at i:15698027 original size:27 final size:27
Alignment explanation
Indices: 15697995--15698052 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
15697985 TCTTGCCTTA
* *
15697995 AGCTATGCTGCAAATTATGTGCCTTTG
1 AGCTATACTGCAAATGATGTGCCTTTG
15698022 AGCTATACTGCAAATGATGTGCCTTTG
1 AGCTATACTGCAAATGATGTGCCTTTG
15698049 AGCT
1 AGCT
15698053 GAGTGTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (27 bp):
AGCTATACTGCAAATGATGTGCCTTTG
Found at i:15698122 original size:107 final size:109
Alignment explanation
Indices: 15697930--15698132 Score: 284
Period size: 107 Copynumber: 1.9 Consensus size: 109
15697920 AAATTTGGTA
* *
15697930 TGCCTTTAAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCTTTCTTGCCTTA
1 TGCCTTTAAGCTGAATGTAATCGAACTCGAAGGTC--TTGTTGGCAGATAACCCTTCTTGCCTTA
* * *
15697995 AGCTATGCTGCAAATTATGTGCCTTTGAGCTATACTGCAAATGATG
64 AGCTATCCTACAAATGATGTGCCTTTGAGCTATACTGCAAATGATG
* * * * *
15698041 TGCCTTTGAGCTGAGTGTAATTGAACTTGAAGGTC-T-TTGGCAGATAACCCTTCTTGCCTTGAG
1 TGCCTTTAAGCTGAATGTAATCGAACTCGAAGGTCTTGTTGGCAGATAACCCTTCTTGCCTTAAG
15698104 CTATCCTACAAATGATGTGCCTTTGAGCT
66 CTATCCTACAAATGATGTGCCTTTGAGCT
15698133 GAGTGTAATC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
107 50 0.61
108 1 0.01
111 31 0.38
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (109 bp):
TGCCTTTAAGCTGAATGTAATCGAACTCGAAGGTCTTGTTGGCAGATAACCCTTCTTGCCTTAAG
CTATCCTACAAATGATGTGCCTTTGAGCTATACTGCAAATGATG
Done.