Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 68 of 73
Found at i:15698153 original size:80 final size:80
Alignment explanation
Indices: 15698014--15699092 Score: 1188
Period size: 80 Copynumber: 13.2 Consensus size: 80
15698004 GCAAATTATG
* * *
15698014 TGCCTTTGAGCTATACTGCAAATGATGTGCCTTTGAGCTGAGTGTAATTGAACTTGAAGGTCTTT
1 TGCC-TTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTT
15698079 GGCAGATAACCCTTCT
65 GGCAGATAACCCTTCT
* * *
15698095 TGCCTTGAGCTATCCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
*
15698160 GTAGATAACCCTTCT
66 GCAGATAACCCTTCT
* * *
15698175 TGCCTTGAGCTATGTTGCAAATGATGTGCCTTTAAGCTGAGTGTGATCGAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* * *
15698240 ACAAATAACCCTTAT
66 GCAGATAACCCTTCT
* **
15698255 TGCATTGATTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* *
15698320 GTAGATAACCCTTTT
66 GCAGATAACCCTTCT
* * * *
15698335 TACTTTGAGTTATGCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* * *
15698400 GAAGGTAGCCCTTCT
66 GCAGATAACCCTTCT
* * * *
15698415 TGCCTTGAGCTATACTGCAAATGATGTGCCTTTGAGCCGAATGTAATCGAACTCGAAGGTATTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* * *
15698480 GTAGGTAGCCCTTCT
66 GCAGATAACCCTTCT
* *
15698495 TGCCTTGAGCTATGCTGCAAATGATGTGTCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* *
15698560 GAATATAACCCTTCT
66 GCAGATAACCCTTCT
* * * * *
15698575 TGCTTTGAGTTATGCTGCAAATGTTGTGCCTTTGAACTGAGTGTAATCGAACTCGAAGGTCTTTA
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* *
15698640 GAAGATAGCCCTTCT
66 GCAGATAACCCTTCT
* * *
15698655 TGCCTTGAGCTATGTTGTAAATGATGTGACTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
* *
15698720 ATGATAGATAGCCCTTCT
66 --G-CAGATAACCCTTCT
* * * *
15698738 TTCCTCGAGCTATGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCAAACTC-ACAGGTCTTT
1 TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGA-AGGTCTTT
15698802 GTTGACAGATAACCCTTCT
65 G--G-CAGATAACCCTTCT
* * * * * * *
15698821 AGCCTTGAGTTATGCTGTAAATTTGATATGCCTCTGAGCTGAATGTACTCGAACTCGAAGGTCTT
1 TGCCTTGAGCTATGCTGCAAA--TGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC--
* *
15698886 TTATGACAGATAGCCCTTCT
62 TT-TGGCAGATAACCCTTCT
* * * * * * ** * * *
15698906 TGCCTTCAGATGTACTGTAAATTTAATGTGCCTCGGAGTTGAGTGTAATCAAACTCGAGGGTCTT
1 TGCCTTGAGCTATGCTGCAAA--TGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-T
* *
15698971 GGTTGACTGATAACCCTTCT
63 --TTGGCAGATAACCCTTCT
* * * * *
15698991 CGCCTTGAGTTGTACTGCAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT
1 TGCCTTGAGCTATGCTGCAAA--TGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-T
*
15699056 TTGTTGACAGATAGCGCCCTTCT
63 TTG--G-CAGATA--ACCCTTCT
*
15699079 CGCCTTGAGCTATG
1 TGCCTTGAGCTATG
15699093 ATGTACTGGA
Statistics
Matches: 855, Mismatches: 126, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
80 551 0.64
81 4 0.00
82 2 0.00
83 103 0.12
84 2 0.00
85 164 0.19
86 7 0.01
87 2 0.00
88 20 0.02
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (80 bp):
TGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTG
GCAGATAACCCTTCT
Found at i:15703678 original size:11 final size:10
Alignment explanation
Indices: 15703655--15703721 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 10
15703645 AAACAAAAAT
15703655 TAGAAAA-AA
1 TAGAAAATAA
15703664 -AGAAAGATAA
1 TAGAAA-ATAA
15703674 TAGAAAATAA
1 TAGAAAATAA
*
15703684 TAAAATAATAA
1 TAGAA-AATAA
*
15703695 TA-AAATAAAA
1 TAGAAA-ATAA
15703705 TA-AAAATAA
1 TAGAAAATAA
15703714 TAGTAAAA
1 TAG-AAAA
15703722 GGTTAGTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
8 5 0.10
9 7 0.15
10 20 0.42
11 16 0.33
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.19
Consensus pattern (10 bp):
TAGAAAATAA
Found at i:15703679 original size:19 final size:18
Alignment explanation
Indices: 15703655--15703693 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15703645 AAACAAAAAT
15703655 TAGAAAAAAAGAAAGATAA
1 TAGAAAAAAAGAAA-ATAA
* *
15703674 TAGAAAATAATAAAATAA
1 TAGAAAAAAAGAAAATAA
15703692 TA
1 TA
15703694 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (18 bp):
TAGAAAAAAAGAAAATAA
Found at i:15703699 original size:19 final size:21
Alignment explanation
Indices: 15703677--15703721 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
15703667 AAGATAATAG
15703677 AAAAT-AAT-AAAATAATAAT
1 AAAATAAATAAAAATAATAAT
*
15703696 AAAATAAAATAAAAATAATAGT
1 AAAAT-AAATAAAAATAATAAT
15703718 AAAA
1 AAAA
15703722 GGTTAGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
21 3 0.14
22 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAATAAATAAAAATAATAAT
Found at i:15703703 original size:16 final size:16
Alignment explanation
Indices: 15703682--15703713 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15703672 AATAGAAAAT
*
15703682 AATAAAATAATAATAA
1 AATAAAATAAAAATAA
15703698 AATAAAATAAAAATAA
1 AATAAAATAAAAATAA
15703714 TAGTAAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:15704891 original size:3 final size:3
Alignment explanation
Indices: 15704885--15704937 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
15704875 TAAAAAAATA
*
15704885 AAT AAT AAT AAT AAT AAT -AT ACT AATT AAT AAT -AT AAT -AT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT -AAT
15704929 AAT -AT AAT A
1 AAT AAT AAT A
15704938 TATATATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
2 8 0.19
3 29 0.69
4 5 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:15704929 original size:14 final size:14
Alignment explanation
Indices: 15704882--15704939 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
15704872 AAATAAAAAA
15704882 ATAAATAATAATAAT
1 ATAAATAAT-ATAAT
15704897 A-ATAAT-ATACTAAT
1 ATA-AATAATA-TAAT
15704911 -T-AATAATATAAT
1 ATAAATAATATAAT
15704923 ATAAATAATATAAT
1 ATAAATAATATAAT
15704937 ATA
1 ATA
15704940 TATATTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
12 7 0.19
13 5 0.14
14 21 0.57
15 4 0.11
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAATAATATAAT
Found at i:15705021 original size:36 final size:35
Alignment explanation
Indices: 15704930--15705291 Score: 382
Period size: 36 Copynumber: 10.4 Consensus size: 35
15704920 AATATAAATA
* *
15704930 ATATAATATATATATTTCAAAAATATTTTT-AAACT
1 ATATATTATATAT-TTTCAAAAATGTTTTTAAAACT
* * *
15704965 ATATATTATAT-TTTTTAAAAAAGTTTTCAAAACT
1 ATATATTATATATTTTCAAAAATGTTTTTAAAACT
* *
15704999 ATATATTATATAGTTTTCAAAAATG-ATTTAAAAAT
1 ATATATTATATA-TTTTCAAAAATGTTTTTAAAACT
15705034 AT-TA-TATA-AGTTTTCAAAAAATGTTTTTAAAACT
1 ATATATTATATA-TTTTC-AAAAATGTTTTTAAAACT
15705068 ATATATTATATAATTTTCAAAAATGTTTTTAAAACT
1 ATATATTATAT-ATTTTCAAAAATGTTTTTAAAACT
15705104 ATATATTATATAATTTTTCAAAAATGTTTTTAAAACT
1 ATATATTATAT-A-TTTTCAAAAATGTTTTTAAAACT
15705141 ATATATTATATAATTTTCAAAAATGTTTTTAAAACT
1 ATATATTATAT-ATTTTCAAAAATGTTTTTAAAACT
15705177 ATATA-TATA-ATTTTTCAAAAATGTTTTTAAAAC-
1 ATATATTATATA-TTTTCAAAAATGTTTTTAAAACT
15705210 ------TATATATTTTC-AAAATGTTTTTAAAAAACTAT
1 ATATATTATATATTTTCAAAAATGTTTTT--AAAAC--T
*
15705242 ATATATTATATAATTTTTC-AAAATG-TTTTAAAAAT
1 ATATATTATAT-A-TTTTCAAAAATGTTTTTAAAACT
15705277 CATATATTATATATT
1 -ATATATTATATATT
15705292 ATATAATTTT
Statistics
Matches: 288, Mismatches: 13, Indels: 53
0.81 0.04 0.15
Matches are distributed among these distances:
27 11 0.04
28 9 0.03
29 6 0.02
32 7 0.02
33 24 0.08
34 53 0.18
35 27 0.09
36 84 0.29
37 45 0.16
38 6 0.02
39 5 0.02
40 11 0.04
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (35 bp):
ATATATTATATATTTTCAAAAATGTTTTTAAAACT
Found at i:15705242 original size:27 final size:28
Alignment explanation
Indices: 15705148--15705243 Score: 97
Period size: 34 Copynumber: 3.2 Consensus size: 28
15705138 ACTATATATT
15705148 ATATAATTTTCAAAAATGTTTTTAAAACTATA
1 ATAT-ATTTTCAAAAATGTTTTTAAAAC---A
*
15705180 TATATAATTTTTCAAAAATGTTTTTAAAACT
1 -ATAT-A-TTTTCAAAAATGTTTTTAAAACA
15705211 ATATATTTTC-AAAATGTTTTTAAAA-A
1 ATATATTTTCAAAAATGTTTTTAAAACA
15705237 ACTATAT
1 A-TATAT
15705244 ATATTATATA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
26 1 0.02
27 20 0.34
28 5 0.08
29 1 0.02
30 4 0.07
33 6 0.10
34 22 0.37
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (28 bp):
ATATATTTTCAAAAATGTTTTTAAAACA
Found at i:15705260 original size:40 final size:42
Alignment explanation
Indices: 15705216--15705336 Score: 137
Period size: 39 Copynumber: 3.0 Consensus size: 42
15705206 AAACTATATA
*
15705216 TTTTCAAAATGTTTTTAAAAA-A-CTA-TATATATTATATAAT
1 TTTTCAAAATG-TTTTAAAAACATATATTATATATTATATAAT
15705256 TTTTCAAAATGTTTTAAAAATCATATATTATATATTATATAAT
1 TTTTCAAAATGTTTTAAAAA-CATATATTATATATTATATAAT
* * *
15705299 TTTT-AAAATGATTT-CAAAC-TATAATATATATATATATA
1 TTTTCAAAATGTTTTAAAAACATATATTATATAT-TATATA
15705337 TATAAATAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
39 20 0.28
40 18 0.25
41 4 0.06
42 11 0.15
43 19 0.26
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (42 bp):
TTTTCAAAATGTTTTAAAAACATATATTATATATTATATAAT
Found at i:15705337 original size:42 final size:41
Alignment explanation
Indices: 15705216--15705338 Score: 135
Period size: 43 Copynumber: 3.0 Consensus size: 41
15705206 AAACTATATA
* *
15705216 TTTTCAAAATGTTTTTAAAAA-ACTATATATAT-TATATAAT
1 TTTTCAAAATG-TTTCAAAAATAATATATATATATATATAAT
* *
15705256 TTTTCAAAATGTTTTAAAAATCATATATTATATATTATATAAT
1 TTTTCAAAATGTTTCAAAAATAATATA-TATATA-TATATAAT
*
15705299 TTTT-AAAATGATTTCAAACTATAATATATATATATATATA
1 TTTTCAAAATG-TTTCAAA-AATAATATATATATATATATA
15705339 TAAATAAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
39 9 0.12
40 15 0.21
41 5 0.07
42 12 0.17
43 24 0.33
44 7 0.10
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (41 bp):
TTTTCAAAATGTTTCAAAAATAATATATATATATATATAAT
Found at i:15705609 original size:17 final size:17
Alignment explanation
Indices: 15705587--15705638 Score: 104
Period size: 17 Copynumber: 3.1 Consensus size: 17
15705577 CGAGTTCTGA
15705587 TGGAATATAAATGGATT
1 TGGAATATAAATGGATT
15705604 TGGAATATAAATGGATT
1 TGGAATATAAATGGATT
15705621 TGGAATATAAATGGATT
1 TGGAATATAAATGGATT
15705638 T
1 T
15705639 TTAAAGTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (17 bp):
TGGAATATAAATGGATT
Found at i:15706212 original size:2 final size:2
Alignment explanation
Indices: 15706207--15706237 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15706197 TTTCACTCAT
15706207 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15706238 TGATATAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15707680 original size:52 final size:51
Alignment explanation
Indices: 15707612--15707710 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 51
15707602 ATATATTTCG
* * *
15707612 CATTTGATTCTCTTTAAAGTATCAATTTGAGTGTTGTGGAGTATTCTATTCT
1 CATTTGATTCTCTTTAAAGTATCAATTTAAATGATGT-GAGTATTCTATTCT
* *
15707664 CATTTGATTCTTTTTAATGTATCAATTTAAATGATGTGAGTATTCTA
1 CATTTGATTCTCTTTAAAGTATCAATTTAAATGATGTGAGTATTCTA
15707711 ATCTTCCTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 10 0.24
52 32 0.76
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.48
Consensus pattern (51 bp):
CATTTGATTCTCTTTAAAGTATCAATTTAAATGATGTGAGTATTCTATTCT
Found at i:15710994 original size:21 final size:21
Alignment explanation
Indices: 15710970--15711011 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15710960 AGTTTATTTT
15710970 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
15710991 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
15711012 AACTTGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:15711059 original size:33 final size:33
Alignment explanation
Indices: 15711006--15711104 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
15710996 TTTGTTTCAA
*
15711006 TTATCGAACTT-GAAGTTTTTAAGCATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
15711038 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
15711071 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
15711104 T
1 T
15711105 ATGTTAAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 11 0.18
33 51 0.82
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.44
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:15711133 original size:13 final size:13
Alignment explanation
Indices: 15711090--15711144 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
15711080 TTGGAAGTAT
15711090 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
15711103 TTATGTTAAGTT-AA
1 TTAAG-T-ATTTCAA
15711117 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
15711130 TTAAGTATTTGAA
1 TTAAGTATTTCAA
15711143 TT
1 TT
15711145 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:15711870 original size:15 final size:15
Alignment explanation
Indices: 15711818--15711870 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
15711808 TTTAATAATA
*
15711818 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
* *
15711833 TTATAACTGGTTTTT
1 TTAAAACCGGTTTTT
*
15711848 TAAAAAAACCGGTTTTT
1 T--TAAAACCGGTTTTT
15711865 TTAAAA
1 TTAAAA
15711871 TCGAAACCGG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 17 0.59
17 12 0.41
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:15715516 original size:3 final size:3
Alignment explanation
Indices: 15715508--15715554 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
15715498 AAGCGGTGGC
* *
15715508 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGA TGT TGA TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TG
15715555 ACCGGGTTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.04, C:0.00, G:0.34, T:0.62
Consensus pattern (3 bp):
TGT
Found at i:15716295 original size:23 final size:23
Alignment explanation
Indices: 15716269--15716316 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
15716259 ATAAAGTACA
*
15716269 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
15716292 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
15716315 AT
1 AT
15716317 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:15716681 original size:20 final size:20
Alignment explanation
Indices: 15716656--15716694 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15716646 TCCACAGTGA
* *
15716656 AAAAAGTATGGACACTTTAT
1 AAAAAGGATAGACACTTTAT
15716676 AAAAAGGATAGACACTTTA
1 AAAAAGGATAGACACTTTA
15716695 CAATATAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (20 bp):
AAAAAGGATAGACACTTTAT
Found at i:15717066 original size:18 final size:18
Alignment explanation
Indices: 15717043--15717079 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15717033 CGAAATATAT
15717043 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
15717061 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
15717079 A
1 A
15717080 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:15717309 original size:23 final size:23
Alignment explanation
Indices: 15717283--15717347 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
15717273 ATGCGAGATA
15717283 GATACCTATTACATTATATAAAC
1 GATACCTATTACATTATATAAAC
**
15717306 GATACCTATTACATTATATAAGG
1 GATACCTATTACATTATATAAAC
* *
15717329 GCTACCTATTACATCATAT
1 GATACCTATTACATTATAT
15717348 GTTTACCTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (23 bp):
GATACCTATTACATTATATAAAC
Found at i:15718199 original size:407 final size:408
Alignment explanation
Indices: 15717308--15719068 Score: 3396
Period size: 407 Copynumber: 4.3 Consensus size: 408
15717298 ATATAAACGA
15717308 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15717373 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAA-ACTTATGTAATTTATGTTTCAAT-TTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGA--TATGTAATTTATGTTTCAATATTT
*
15717436 TTTAA-CAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAAT
129 TTTAAGTA-TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAAT
15717500 TATTTGATTG-TTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATAC
193 TATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATAC
15717564 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
258 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
15717629 AAAGATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
323 AAAGATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
15717694 GACACTTTACAATATAACCAT
388 GACACTTTACAATATAACCAT
15717715 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15717780 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
15717845 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
131 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
15717910 TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
196 TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
15717975 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
261 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
15718040 GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
326 GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
15718105 ACTTTACAATATAACCAT
391 ACTTTACAATATAACCAT
15718123 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15718188 CATAC-TTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
15718252 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
131 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
15718317 TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
196 TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
15718382 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
261 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
15718447 GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
326 GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
15718512 ACTTTACAATATAACCAT
391 ACTTTACAATATAACCAT
15718530 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT-TTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15718594 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
15718659 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
131 TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
15718724 TTGATTGTTTTTATA-TTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
196 TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
15718788 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
261 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
*
15718853 GATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
326 GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
15718918 ACTTTACAATATAACCAT
391 ACTTTACAATATAACCAT
15718936 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15719001 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAA-ACTTATGTAATTTATGTTTCAAT-TTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGA--TATGTAATTTATGTTTCAATATTT
15719064 TTTAA
129 TTTAA
15719069 CAGTGTACTG
Statistics
Matches: 1344, Mismatches: 2, Indels: 16
0.99 0.00 0.01
Matches are distributed among these distances:
406 286 0.21
407 761 0.57
408 297 0.22
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (408 bp):
TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTTTCAATATTTTT
TAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
TTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGT
AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
GATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGAC
ACTTTACAATATAACCAT
Found at i:15719058 original size:815 final size:815
Alignment explanation
Indices: 15717308--15719074 Score: 3438
Period size: 815 Copynumber: 2.2 Consensus size: 815
15717298 ATATAAACGA
15717308 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15717373 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTT
15717438 TAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
131 TAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
15717503 TTGATTGTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGTA
196 TTGATTGTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGTA
15717568 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
261 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
15717633 ATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACA
326 ATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACA
15717698 CTTTACAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCT
391 CTTTACAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCT
15717763 ATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATT
456 ATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATT
15717828 TATGTTTCAATATTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCA
521 TATGTTTCAATATTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCA
15717893 TTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTA
586 TTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTA
15717958 ATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
651 ATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
15718023 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTT
716 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
15718088 TTATAAAAAGGATAGACACTTTACAATATAACCAT
781 TTATAAAAAGGATAGACACTTTACAATATAACCAT
15718123 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15718188 CATAC-TTTTATAAAAAGGATCGATACTTTTTTTAAAGA--TATGTAATTTATGTTTCAATATTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAA-ACTTATGTAATTTATGTTTCAAT-TTT
*
15718250 TTTAAGTA-TGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAAT
129 TTTAA-CAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAAT
15718314 TATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATAC
193 TATTTGATTG-TTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATAC
15718379 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
257 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
15718444 AAAGATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
322 AAAGATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
15718509 GACACTTTACAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTT
387 GACACTTTACAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTT
15718574 ACCTATTAT-TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGT
452 ACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGT
15718638 AATTTATGTTTCAATATTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAAT
517 AATTTATGTTTCAATATTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAAT
15718703 TTCATTTGCACAAAAAATTATTTGATTGTTTTTATA-TTTATAAAATATTATTTAGAATTTTAAA
582 TTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAA
15718767 TTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
647 TTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
15718832 TATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
712 TATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
15718897 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
777 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
15718936 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
1 TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
15719001 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTT
66 CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTT
15719066 TAACAGTGT
131 TAACAGTGT
15719075 ACTGCGAATT
Statistics
Matches: 941, Mismatches: 3, Indels: 17
0.98 0.00 0.02
Matches are distributed among these distances:
813 288 0.31
814 303 0.32
815 350 0.37
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (815 bp):
TACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTC
CATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTT
TAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTAT
TTGATTGTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTAATAATAATATATACCGTA
ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
ATAACCTTAAATTAATGTTTTCCACATTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACA
CTTTACAATATAACCATTACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCT
ATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATT
TATGTTTCAATATTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAAATTTA
ATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAAGGATAGACACTTTACAATATAACCAT
Found at i:15721843 original size:184 final size:184
Alignment explanation
Indices: 15721534--15722389 Score: 1631
Period size: 184 Copynumber: 4.7 Consensus size: 184
15721524 TTTTAAATGG
*
15721534 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
15721599 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
15721664 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
15721718 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
15721783 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
15721848 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
*
15721902 TATGGATATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
15721967 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
15722032 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
*
15722086 TATGGATATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
*
15722151 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
*
15722216 GATGTGTAAAATGTCGACACTTTTTTAAATCGTTTCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
15722270 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
** **
15722335 TAAGCCCGGTATATTTATACCGGTTATATTACAAAATTATCTATTTTATTATAAT
66 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAT
15722390 ATGTTGAAAG
Statistics
Matches: 664, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
184 664 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (184 bp):
TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
Found at i:15723866 original size:3 final size:3
Alignment explanation
Indices: 15723858--15723931 Score: 76
Period size: 3 Copynumber: 24.7 Consensus size: 3
15723848 ACTTGTTTGG
* * * **
15723858 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
15723906 AGC TTC ATC GTC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
15723932 TGTCATCTTC
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.26, C:0.34, G:0.05, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:15723925 original size:42 final size:42
Alignment explanation
Indices: 15723866--15723956 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
15723856 GGATCATCAT
*
15723866 CTTCATCATCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
* ** * *
15723908 CTTCATCGTCATCATCATCATCATTGTCATCTTCATTGTCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
15723950 CTTCATC
1 CTTCATC
15723957 TTCTGCGACC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.37
Consensus pattern (42 bp):
CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:15723937 original size:9 final size:9
Alignment explanation
Indices: 15723871--15723938 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
15723861 ATCATCTTCA
*
15723871 TCATCATCA
1 TCATCATCG
15723880 TCATCATCG
1 TCATCATCG
*
15723889 TCATCATCT
1 TCATCATCG
**
15723898 TCATCGCCAG
1 TCATCATC-G
*
15723908 -CTTCATCG
1 TCATCATCG
*
15723916 TCATCATCA
1 TCATCATCG
*
15723925 TCATCATTG
1 TCATCATCG
15723934 TCATC
1 TCATC
15723939 TTCATTGTCA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
8 1 0.02
9 44 0.98
ACGTcount: A:0.24, C:0.34, G:0.07, T:0.35
Consensus pattern (9 bp):
TCATCATCG
Found at i:15723959 original size:6 final size:6
Alignment explanation
Indices: 15723862--15723959 Score: 56
Period size: 6 Copynumber: 16.3 Consensus size: 6
15723852 GTTTGGATCA
* * * * * * * *
15723862 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
15723910 TCATCG TCATCA TCATCA TCAT-T GTCATCT TCAT-T GTCAGCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT -TCATCT TCATCT -TCATCT TCATCT
15723958 TC
1 TC
15723960 TGCGACCGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
5 1 0.01
6 70 0.96
7 2 0.03
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:15726348 original size:395 final size:398
Alignment explanation
Indices: 15725422--15727235 Score: 3455
Period size: 395 Copynumber: 4.6 Consensus size: 398
15725412 TTTAAATTAG
*
15725422 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* *
15725487 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
*
15725552 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGTAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
15725617 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
15725682 ATAATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
15725746 GATCGACAC-TTTTT-TATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
326 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
15725809 GAAAAAAA
391 GAAAAAAA
*
15725817 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15725882 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
*
15725947 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGTAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
15726012 AAA-ATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
15726076 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
15726140 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
326 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
15726205 GAAAAAAA
391 GAAAAAAA
15726213 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
15726278 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTTGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
15726342 CGACAC-TTTT-TATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
15726405 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
15726470 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
15726535 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
326 GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
15726600 GAAAAAAA
391 GAAAAAAA
15726608 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15726673 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
15726738 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
15726803 CAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 -AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
15726868 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
260 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
15726933 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
325 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
15726998 GGAAAAAAA
390 GGAAAAAAA
15727007 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* *
15727072 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
15727137 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG--AA
*
15727202 AAAAATATCGACACAAACTATATTAGTATCGACA
194 AAAAATATCGACACAAACTATATTAGTGTCGACA
15727236 TGACCCTTAA
Statistics
Matches: 1399, Mismatches: 9, Indels: 17
0.98 0.01 0.01
Matches are distributed among these distances:
393 55 0.04
394 219 0.16
395 451 0.32
396 190 0.14
397 4 0.00
398 53 0.04
399 392 0.28
400 31 0.02
401 4 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (398 bp):
TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGT
ATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
GATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
GAAAAAAA
Found at i:15726684 original size:200 final size:199
Alignment explanation
Indices: 15725422--15727235 Score: 3308
Period size: 199 Copynumber: 9.1 Consensus size: 199
15725412 TTTAAATTAG
15725422 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15725487 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15725552 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GTAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
15725616 AAAA
196 AAAA
15725620 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15725685 ATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15725749 CGACACTTTTT-TATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
15725813 AAAA
196 AAAA
15725817 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* *
15725882 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15725947 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GTAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
15726011 AAAA
196 AAAA
15726015 -ATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15726079 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15726143 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAA
15726208 AAAAA
195 AAAAA
*
15726213 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* * *
15726278 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTTGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15726342 CGACAC-TTTT-TATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
15726404 AAAA
196 AAAA
15726408 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15726473 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15726538 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAA
15726603 AAAAA
195 AAAAA
*
15726608 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
* *
15726673 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATTCTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
15726738 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
15726802 ACAAA
196 A-AAA
15726807 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15726872 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
15726937 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAA
15727002 AAAAA
195 AAAAA
*
15727007 TATCGACACAGACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
15727072 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
15727137 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGG-GAA
15727202 AAAAA
195 AAAAA
*
15727207 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
15727236 TGACCCTTAA
Statistics
Matches: 1560, Mismatches: 40, Indels: 30
0.96 0.02 0.02
Matches are distributed among these distances:
195 126 0.08
196 133 0.09
197 306 0.20
198 165 0.11
199 446 0.29
200 378 0.24
201 6 0.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGGAAA
AAAA
Found at i:15727344 original size:19 final size:19
Alignment explanation
Indices: 15727317--15727361 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
15727307 ATTCACATAA
*
15727317 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
15727336 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
15727355 AAAATTA
1 AAAATTA
15727362 ACTCGACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:15729192 original size:33 final size:33
Alignment explanation
Indices: 15729155--15729220 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
15729145 CATCTTAATA
*
15729155 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
15729188 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
15729221 CCTTCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:15731542 original size:17 final size:18
Alignment explanation
Indices: 15731520--15731561 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
15731510 ATATATCCGG
15731520 TATCATT-TTACCGGTTT
1 TATCATTATTACCGGTTT
15731537 TATCATTTATTACCGGTTT
1 TATCA-TTATTACCGGTTT
15731556 TATCAT
1 TATCAT
15731562 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 15 0.65
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (18 bp):
TATCATTATTACCGGTTT
Found at i:15731579 original size:20 final size:19
Alignment explanation
Indices: 15731525--15731570 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
15731515 TCCGGTATCA
15731525 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
15731544 TATTACCGGTTTTATCATAT
1 TTTTACCGGTTTTATCAT-T
15731564 TTTTACC
1 TTTTACC
15731571 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:15731717 original size:20 final size:20
Alignment explanation
Indices: 15731691--15731736 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
15731681 CACTTTTAAA
15731691 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
15731710 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
15731731 TTTACC
1 TTTACC
15731737 TGGTATATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:15732167 original size:226 final size:225
Alignment explanation
Indices: 15731801--15732244 Score: 741
Period size: 226 Copynumber: 2.0 Consensus size: 225
15731791 TTAAAACTGC
15731801 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTCATGTTTTCCACCTACAATAT
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTCATGTTTTCCACCTACAATAT
**
15731866 TAATTTAATAATTTAATTTACCAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTATTT
66 TAATTTAATAATTTAATTTACCAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTT
* *
15731931 AGAATTTAAATTT-A-AATATTAACCAAATAT-ATAATAAATATGTTTTCAACAGTGAAATAAGT
131 AGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTC-ACAGTGAAATAAGT
*
15731993 ATGGACACTTTTATAAAAATGATATATACTT
195 ATGGACACTTTTATAAAAAGGATATATACTT
*
15732024 TTTTGAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTG-TTCATGTTTTCCACCTACAAT
*
15732089 ATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA
64 ATTAATTTAATAATTTAATTTAC-CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA
* *
15732154 TTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTCACAGTGAAATAA
128 TTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATAA
*
15732219 GTATGGATACTTTTATAAAAAGGATA
193 GTATGGACACTTTTATAAAAAGGATA
15732245 GATAATTTAC
Statistics
Matches: 205, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
223 4 0.02
224 37 0.18
225 43 0.21
226 54 0.26
227 1 0.00
228 50 0.24
229 16 0.08
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (225 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTCATGTTTTCCACCTACAATAT
TAATTTAATAATTTAATTTACCAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTT
AGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATAAGTA
TGGACACTTTTATAAAAAGGATATATACTT
Found at i:15734565 original size:22 final size:22
Alignment explanation
Indices: 15734540--15734637 Score: 63
Period size: 22 Copynumber: 4.3 Consensus size: 22
15734530 TTAAAATAAA
15734540 TTATTATAAAATATGGATTGAT
1 TTATTATAAAATATGGATTGAT
* ** * *
15734562 TTATTTTAAAATAATTTATTTTAAA
1 TTATTATAAAAT-ATGGA--TTGAT
* * * *
15734587 TAATT-TATTAGTATGAATTGAT
1 TTATTATA-AAATATGGATTGAT
*
15734609 TTATTTTAAAATATGGATTGAT
1 TTATTATAAAATATGGATTGAT
15734631 TTATTAT
1 TTATTAT
15734638 TGTAGTTGTA
Statistics
Matches: 54, Mismatches: 17, Indels: 10
0.67 0.21 0.12
Matches are distributed among these distances:
22 35 0.65
23 5 0.09
24 5 0.09
25 9 0.17
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (22 bp):
TTATTATAAAATATGGATTGAT
Found at i:15734589 original size:14 final size:15
Alignment explanation
Indices: 15734478--15734595 Score: 130
Period size: 15 Copynumber: 7.5 Consensus size: 15
15734468 TAATAAGGTT
15734478 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
15734493 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
15734508 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
15734523 ATTTACTTTAAAATA
1 ATTTATTTTAAAATA
* *
15734538 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
15734557 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
15734575 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
15734589 ATTTATT
1 ATTTATT
15734596 AGTATGAATT
Statistics
Matches: 88, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
14 12 0.14
15 56 0.64
16 4 0.05
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.05
22 6 0.07
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:15734609 original size:47 final size:46
Alignment explanation
Indices: 15734478--15734675 Score: 138
Period size: 47 Copynumber: 4.2 Consensus size: 46
15734468 TAATAAGGTT
* * * *
15734478 ATTTATTTTAAAATAATTTATT-T-TAAAATAATTTATTATAAAATA
1 ATTTATTTT-AAATAATTTATTGTATGAATTGATTTATTTTAAAATA
* ** *
15734523 ATTTACTTTAAAATAAATTATTATAAAATATGGATTGATTTATTTTAAAATA
1 ATTTA-TTTTAAAT-AA-T-TTAT--TGTATGAATTGATTTATTTTAAAATA
15734575 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATA
1 ATTTATTTTAAATAATTTATT-GTATGAATTGATTTATTTTAAAATA
* * *
15734622 TGGATTGA-TTT--ATTATTGTAGTTGTATGGATTGATTTATTTT-AAATA
1 ---ATTTATTTTAAATAATT-TA-TTGTATGAATTGATTTATTTTAAAATA
15734669 ATTTATT
1 ATTTATT
15734676 AGTATGGATT
Statistics
Matches: 123, Mismatches: 15, Indels: 30
0.73 0.09 0.18
Matches are distributed among these distances:
44 4 0.03
45 10 0.08
46 5 0.04
47 34 0.28
48 28 0.23
49 6 0.05
50 6 0.05
51 8 0.07
52 22 0.18
ACGTcount: A:0.40, C:0.01, G:0.08, T:0.52
Consensus pattern (46 bp):
ATTTATTTTAAATAATTTATTGTATGAATTGATTTATTTTAAAATA
Found at i:15734668 original size:80 final size:83
Alignment explanation
Indices: 15734575--15734779 Score: 294
Period size: 80 Copynumber: 2.5 Consensus size: 83
15734565 TTTTAAAATA
15734575 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTA-TT-AT
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTAAT
15734638 -TGTAGTT-GTATGGATTG
66 ATGTA-TTAGTATGGATTG
*
15734655 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTA-TTT-A
* *
15734720 ATAATTTATTAGTATTGATTG
64 AT-ATGTATTAGTATGGATTG
*
15734741 ATTTATTTTAAATAATTTATTTGTAT-AGATTGATTTATT
1 ATTTATTTTAAATAATTTATTAGTATGA-ATTGATTTATT
15734780 ATTGTAGTTG
Statistics
Matches: 112, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
80 58 0.52
82 2 0.02
84 2 0.02
85 2 0.02
86 48 0.43
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (83 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTAAT
ATGTATTAGTATGGATTG
Found at i:15734686 original size:32 final size:32
Alignment explanation
Indices: 15734645--15734900 Score: 229
Period size: 32 Copynumber: 8.7 Consensus size: 32
15734635 TATTGTAGTT
15734645 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
15734677 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
15734700 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
15734731 GTATTGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
15734763 GTATAGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
* *
15734789 GTAGGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
15734821 GTAT--A--GATTGA-TTT-AAT-ATTGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATT-TA-TTA
* *
15734847 GTAGGGATTGAGTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
15734879 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
15734901 ATATGGATTG
Statistics
Matches: 182, Mismatches: 14, Indels: 56
0.72 0.06 0.22
Matches are distributed among these distances:
22 14 0.08
23 4 0.02
25 4 0.02
26 27 0.15
27 7 0.04
28 13 0.07
29 1 0.01
30 9 0.05
31 11 0.06
32 89 0.49
33 3 0.02
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.52
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:15734703 original size:22 final size:22
Alignment explanation
Indices: 15734678--15734720 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
15734668 AATTTATTAG
15734678 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
15734700 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
15734721 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:15734715 original size:54 final size:54
Alignment explanation
Indices: 15734646--15734752 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
15734636 ATTGTAGTTG
15734646 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
15734700 TATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
15734753 TAATTTATTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:15734797 original size:26 final size:26
Alignment explanation
Indices: 15734768--15734863 Score: 84
Period size: 26 Copynumber: 3.5 Consensus size: 26
15734758 TATTTGTATA
15734768 GATTGATTTATTATTGTAGTTGTAGG
1 GATTGATTTATTATTGTAGTTGTAGG
* * **
15734794 GATTGATTTATTTTAAATAATTTATTTGTATA
1 GATTGATTTA--TT--AT--TGTAGTTGTAGG
*
15734826 GATTGATTTAATATTGTAGTTGTAGG
1 GATTGATTTATTATTGTAGTTGTAGG
*
15734852 GATTGAGTTATT
1 GATTGATTTATT
15734864 TTAAATAATT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
26 28 0.53
28 4 0.08
30 3 0.06
32 18 0.34
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (26 bp):
GATTGATTTATTATTGTAGTTGTAGG
Found at i:15734799 original size:144 final size:148
Alignment explanation
Indices: 15734624--15734900 Score: 445
Period size: 144 Copynumber: 1.9 Consensus size: 148
15734614 TTAAAATATG
* *
15734624 GATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 GATTGATTTATTATTGTAGTTGTAGGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
* * *
15734689 TT-AT-TT-TA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTT
66 TTAATATTGTAGAAATAGGGATTGAGTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
15734750 AAATAATTTATTTGTATA
131 AAATAATTTATTTGTATA
*
15734768 GATTGATTTATTATTGTAGTTGTAGGGATTGATTTATTTTAAATAATTTATTTGTATAGATTGAT
1 GATTGATTTATTATTGTAGTTGTAGGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
***
15734833 TTAATATTGTAGTTGTAGGGATTGAGTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
66 TTAATATTGTAGAAATAGGGATTGAGTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
15734898 AAA
131 AAA
15734901 ATATGGATTG
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
144 64 0.53
145 2 0.02
146 2 0.02
147 2 0.02
148 50 0.42
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (148 bp):
GATTGATTTATTATTGTAGTTGTAGGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
TTAATATTGTAGAAATAGGGATTGAGTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
AAATAATTTATTTGTATA
Found at i:15734806 original size:58 final size:57
Alignment explanation
Indices: 15734736--15734931 Score: 290
Period size: 58 Copynumber: 3.5 Consensus size: 57
15734726 TATTAGTATT
15734736 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTATTGTAGTTGTAGG
1 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTA-TATTGTAGTTGTAGG
15734794 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTAATATTGTAGTTGTAGG
1 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTT-ATATTGTAGTTGTAGG
* * * *** *
15734852 GATTGAGTTATTTTAAATAATTTATTAGTATGGATTGATTTAT-TT-TA-AAATATG
1 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATATTGTAGTTGTAGG
15734906 GATTGATTTATTTTAAATAATTTATT
1 GATTGATTTATTTTAAATAATTTATT
15734932 ATTGTAGTTG
Statistics
Matches: 129, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
54 28 0.22
55 2 0.02
56 2 0.02
57 2 0.02
58 94 0.73
59 1 0.01
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (57 bp):
GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATATTGTAGTTGTAGG
Found at i:15734905 original size:22 final size:22
Alignment explanation
Indices: 15734880--15734922 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
15734870 AATTTATTAG
15734880 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
15734902 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
15734923 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:15734982 original size:31 final size:31
Alignment explanation
Indices: 15734947--15735005 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
15734937 AGTTGTATGG
* *
15734947 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATATCAGTATTGCAAAACTAAA
15734978 ATTATTTAAATATCAGTATTGCAAAACT
1 ATTATTTAAATATCAGTATTGCAAAACT
15735006 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATATCAGTATTGCAAAACTAAA
Found at i:15740469 original size:22 final size:22
Alignment explanation
Indices: 15740422--15740469 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
15740412 TAGTTAATCT
* * *
15740422 GTTAGAAGTTGGTTAGTAGGCT
1 GTTAGAAGTTAGTTAGGAGGCA
15740444 GTTAGAGAGTTAGTTAGGA-GCA
1 GTTAGA-AGTTAGTTAGGAGGCA
15740466 GTTA
1 GTTA
15740470 TTTCTAGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.27, C:0.04, G:0.35, T:0.33
Consensus pattern (22 bp):
GTTAGAAGTTAGTTAGGAGGCA
Found at i:15747107 original size:18 final size:17
Alignment explanation
Indices: 15747053--15747101 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
15747043 TTGGACCCTT
* *
15747053 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
15747071 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
15747089 AGTGCATTCGATG
1 AGTGCA-TCGATG
15747102 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:15747739 original size:13 final size:13
Alignment explanation
Indices: 15747721--15747745 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15747711 AGCCATTAGT
15747721 TTCATAATCAATA
1 TTCATAATCAATA
15747734 TTCATAATCAAT
1 TTCATAATCAAT
15747746 GTGACATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCATAATCAATA
Found at i:15749934 original size:23 final size:22
Alignment explanation
Indices: 15749905--15749985 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
15749895 CATGGCCTTG
*
15749905 TGCATCGATGCACATTCAAGGCG
1 TGCATCGATGCACATTCAAGG-A
* *
15749928 TGCATCGGTGCATC-TTC-ATGA
1 TGCATCGATGCA-CATTCAAGGA
*
15749949 TGAATCGATGCACATTCAAATGGA
1 TGCATCGATGCACATTC-AA-GGA
15749973 TGCATCGATGCAC
1 TGCATCGATGCAC
15749986 TGTTAAGTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
20 1 0.02
21 13 0.28
22 2 0.04
23 15 0.33
24 15 0.33
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGA
Found at i:15755829 original size:44 final size:45
Alignment explanation
Indices: 15755777--15755862 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 45
15755767 GCACTAAGAG
*
15755777 TGCATTCGATG-TTTC-AAAATAGCAGAGTGCATCGATGCATCAAA
1 TGCATTCGATGTTTTCAAAAATA-CACAGTGCATCGATGCATCAAA
*
15755821 TGCATTCGATGTTTTCATAAAATACTCAGTGCATCGATGCAT
1 TGCATTCGATGTTTTCA-AAAATACACAGTGCATCGATGCAT
15755863 GGTATGTGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 11 0.30
45 4 0.11
46 16 0.43
47 6 0.16
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (45 bp):
TGCATTCGATGTTTTCAAAAATACACAGTGCATCGATGCATCAAA
Found at i:15757098 original size:21 final size:22
Alignment explanation
Indices: 15757063--15757113 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
15757053 GTATGAACAA
15757063 TATCGATACCCTATG-GAAGAGG
1 TATCGATACCCTATGTGAA-AGG
*
15757085 TATCGATA-CCTATGTGGAAGG
1 TATCGATACCCTATGTGAAAGG
15757106 TATCGATA
1 TATCGATA
15757114 TAGGGGGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (22 bp):
TATCGATACCCTATGTGAAAGG
Found at i:15764733 original size:20 final size:22
Alignment explanation
Indices: 15764684--15764733 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 22
15764674 AGAGATAAAC
15764684 ATTATTAATATAATATAATTTA
1 ATTATTAATATAATATAATTTA
15764706 ACTT-TTAAT-T-ATAT-ATTTGA
1 A-TTATTAATATAATATAATTT-A
15764726 ATTATTAA
1 ATTATTAA
15764734 GACTTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 6 0.24
20 10 0.40
21 1 0.04
22 6 0.24
23 2 0.08
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTATTAATATAATATAATTTA
Found at i:15770663 original size:21 final size:21
Alignment explanation
Indices: 15770610--15770669 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
15770600 CGAGGGTTAT
*
15770610 AGTGGTCCTTCAGGACAATAC
1 AGTGGTCCTTCGGGACAATAC
15770631 AGTGGTCCTTCGGGACAATAC
1 AGTGGTCCTTCGGGACAATAC
*
15770652 AGTGGTCCTTCGCGACAA
1 AGTGGTCCTTCGGGACAA
15770670 ATTTCATATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (21 bp):
AGTGGTCCTTCGGGACAATAC
Found at i:15779006 original size:21 final size:21
Alignment explanation
Indices: 15778981--15779022 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15778971 AATTTATAAG
15778981 ATCTATGATGAAAATTTTGAA
1 ATCTATGATGAAAATTTTGAA
*
15779002 ATCTATGATGAAATTTTTGAA
1 ATCTATGATGAAAATTTTGAA
15779023 GTCAATGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (21 bp):
ATCTATGATGAAAATTTTGAA
Found at i:15782537 original size:23 final size:23
Alignment explanation
Indices: 15782511--15782559 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
15782501 TCAGTATTAA
15782511 AGAAAAAGGCAACATAATACAAG
1 AGAAAAAGGCAACATAATACAAG
*
15782534 AGAAAAAGGCAACATGATACAAG
1 AGAAAAAGGCAACATAATACAAG
15782557 AGA
1 AGA
15782560 GCTCGCTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.59, C:0.12, G:0.20, T:0.08
Consensus pattern (23 bp):
AGAAAAAGGCAACATAATACAAG
Found at i:15787239 original size:214 final size:214
Alignment explanation
Indices: 15786870--15787300 Score: 853
Period size: 214 Copynumber: 2.0 Consensus size: 214
15786860 ATAAACCATG
*
15786870 ATTTTTATTTACTTTAAGTCATTAAAATAAGTTATTAAATAATTAATCATTTTTTAAGGATGTTA
1 ATTTTTATTTACTTTAAGTCATTAAAATAAGTTATTAAATAATAAATCATTTTTTAAGGATGTTA
15786935 ATATTAAGTTATTAAAATAAAATGTAGATACATAATTGAGTGAAGCTCATACATTAGTACGAGTT
66 ATATTAAGTTATTAAAATAAAATGTAGATACATAATTGAGTGAAGCTCATACATTAGTACGAGTT
15787000 AAATTATAAGGGTTAACTATACGGATGATCACTTTTGTTTGAGTTTTGTTCACTTTTGGTCACTG
131 AAATTATAAGGGTTAACTATACGGATGATCACTTTTGTTTGAGTTTTGTTCACTTTTGGTCACTG
15787065 ATTTCAAAAAACATAAGAT
196 ATTTCAAAAAACATAAGAT
15787084 ATTTTTATTTACTTTAAGTCATTAAAATAAGTTATTAAATAATAAATCATTTTTTAAGGATGTTA
1 ATTTTTATTTACTTTAAGTCATTAAAATAAGTTATTAAATAATAAATCATTTTTTAAGGATGTTA
15787149 ATATTAAGTTATTAAAATAAAATGTAGATACATAATTGAGTGAAGCTCATACATTAGTACGAGTT
66 ATATTAAGTTATTAAAATAAAATGTAGATACATAATTGAGTGAAGCTCATACATTAGTACGAGTT
15787214 AAATTATAAGGGTTAACTATACGGATGATCACTTTTGTTTGAGTTTTGTTCACTTTTGGTCACTG
131 AAATTATAAGGGTTAACTATACGGATGATCACTTTTGTTTGAGTTTTGTTCACTTTTGGTCACTG
15787279 ATTTCAAAAAACATAAGAT
196 ATTTCAAAAAACATAAGAT
15787298 ATT
1 ATT
15787301 GTCACTTTCG
Statistics
Matches: 216, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 216 1.00
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (214 bp):
ATTTTTATTTACTTTAAGTCATTAAAATAAGTTATTAAATAATAAATCATTTTTTAAGGATGTTA
ATATTAAGTTATTAAAATAAAATGTAGATACATAATTGAGTGAAGCTCATACATTAGTACGAGTT
AAATTATAAGGGTTAACTATACGGATGATCACTTTTGTTTGAGTTTTGTTCACTTTTGGTCACTG
ATTTCAAAAAACATAAGAT
Found at i:15787805 original size:27 final size:25
Alignment explanation
Indices: 15787728--15787817 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 25
15787718 TTAAATTCAT
*
15787728 AATAT-TTTATATATATTAACTTCA-AA
1 AATATATTT-TAT-TATTAACTT-ATTA
*
15787754 AATATTTTTTA-TATTAACTTATTA
1 AATATATTTTATTATTAACTTATTA
15787778 AATATATTTTATTATTAACTTGATTTA
1 AATATATTTTATTATTAACTT-A-TTA
*
15787805 AAAATATTTTATT
1 AATATATTTTATT
15787818 TTTATTTAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
23 1 0.02
24 20 0.36
25 9 0.16
26 8 0.14
27 18 0.32
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (25 bp):
AATATATTTTATTATTAACTTATTA
Found at i:15787837 original size:20 final size:20
Alignment explanation
Indices: 15787800--15787848 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
15787790 TATTAACTTG
*
15787800 ATTTAAAAATATTTTATTTTT
1 ATTTAAAAATATTATA-TTTT
15787821 ATTTAAAAATA-TATATTTT
1 ATTTAAAAATATTATATTTT
15787840 ATGTTAAAA
1 AT-TTAAAA
15787849 TTTATTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 6 0.23
20 9 0.35
21 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTAAAAATATTATATTTT
Found at i:15788006 original size:31 final size:31
Alignment explanation
Indices: 15787961--15788025 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
15787951 TAACCCATGA
* *
15787961 TGACCATGTCTTAATTAAATAAAAACAAAAG
1 TGACCATATATTAATTAAATAAAAACAAAAG
**
15787992 TGACCATATATTAATTAAATAAAAATGAAAG
1 TGACCATATATTAATTAAATAAAAACAAAAG
15788023 TGA
1 TGA
15788026 TTATATCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (31 bp):
TGACCATATATTAATTAAATAAAAACAAAAG
Found at i:15788586 original size:65 final size:64
Alignment explanation
Indices: 15788443--15788595 Score: 164
Period size: 65 Copynumber: 2.4 Consensus size: 64
15788433 CCCCATTTCG
* * * ** * *
15788443 AATGCATTTTATGCACCGATGCACAGCCATGCATCGTTGCACTCAGGATTTTATTGAAACATCG
1 AATGCAATTAATGCATCGATGCACAGCCATGCATCAATGCACTCAGGATTGTATTGAAACATCA
* * * * *
15788507 AATGCATTTTATGCATCGATGCACAGACCATGCATCAATGCATTCTTGGCTTGT-TTGAAACATC
1 AATGCAATTAATGCATCGATGCACAG-CCATGCATCAATGCACTC-AGGATTGTATTGAAACATC
15788571 A
64 A
*
15788572 AATGTAATTAATGCATCGATGCAC
1 AATGCAATTAATGCATCGATGCAC
15788596 CCCTAGCGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
64 25 0.33
65 46 0.61
66 5 0.07
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (64 bp):
AATGCAATTAATGCATCGATGCACAGCCATGCATCAATGCACTCAGGATTGTATTGAAACATCA
Found at i:15791721 original size:208 final size:208
Alignment explanation
Indices: 15791357--15791780 Score: 794
Period size: 208 Copynumber: 2.0 Consensus size: 208
15791347 TCATAGAATA
* * *
15791357 GAAAATATTTACATGGTGCATTTAGATTCAATTAATATGATTAATTTATGCCTATTTGCTAAGGA
1 GAAAACATTTACATGGTGCATTTAGATTCAATTAATATGATTAATTTATGCCTAGTTGCTAAAGA
15791422 TGAACATGATAGTTGGTTACGACATATGAGACTATGACATACAAGCATGAGTGTTTTACAACAAC
66 TGAACATGATAGTTGGTTACGACATATGAGACTATGACATACAAGCATGAGTGTTTTACAACAAC
15791487 TAATTCAAGGAAATTTAGTAAGAGGGTTGCCAAAGCTAAAATTTGATAAAGATAAAATATGTGAT
131 TAATTCAAGGAAATTTAGTAAGAGGGTTGCCAAAGCTAAAATTTGATAAAGATAAAATATGTGAT
15791552 GCATGTGCTAAAG
196 GCATGTGCTAAAG
*
15791565 GAAAACATTTACATGGTTCATTTAGATTCAATTAATATGATTAATTTATGCCTAGTTGCTAAAGA
1 GAAAACATTTACATGGTGCATTTAGATTCAATTAATATGATTAATTTATGCCTAGTTGCTAAAGA
15791630 TGAACATGATAGTTGGTTACGACATATGAGACTATGACATACAAGCATGAGTGTTTTACAACAAC
66 TGAACATGATAGTTGGTTACGACATATGAGACTATGACATACAAGCATGAGTGTTTTACAACAAC
*
15791695 TAATTCAAGGAAATTTAGTAAGAGGGTTGCCAAAGCTAAAATTTGATAAAGATAAAATCTGTGAT
131 TAATTCAAGGAAATTTAGTAAGAGGGTTGCCAAAGCTAAAATTTGATAAAGATAAAATATGTGAT
15791760 GCATGTGCTAAAG
196 GCATGTGCTAAAG
*
15791773 GAGAACAT
1 GAAAACAT
15791781 CAAAGAGCTT
Statistics
Matches: 210, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
208 210 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (208 bp):
GAAAACATTTACATGGTGCATTTAGATTCAATTAATATGATTAATTTATGCCTAGTTGCTAAAGA
TGAACATGATAGTTGGTTACGACATATGAGACTATGACATACAAGCATGAGTGTTTTACAACAAC
TAATTCAAGGAAATTTAGTAAGAGGGTTGCCAAAGCTAAAATTTGATAAAGATAAAATATGTGAT
GCATGTGCTAAAG
Found at i:15796891 original size:81 final size:81
Alignment explanation
Indices: 15796794--15796956 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
15796784 ATTCTCCCCT
15796794 ATAAATAGAAGATGAAGCCTGACTTTTTGAGGAGACTGGGAGATTTTTAGACAGCCGCCAAGAGC
1 ATAAATAGAAGATGAAGCCTGACTTTTTGAGGAGACTGGGAGATTTTTAGACAGCCGCCAAGAGC
15796859 TTAAAAATTCAGAGAA
66 TTAAAAATTCAGAGAA
15796875 ATAAATAGAAGATGAAGCCTGACTTTTTGAGGAGACTGGGAGATTTTTAGACAGCCGCCAAGAGC
1 ATAAATAGAAGATGAAGCCTGACTTTTTGAGGAGACTGGGAGATTTTTAGACAGCCGCCAAGAGC
15796940 TTAAAAATTCAGAGAA
66 TTAAAAATTCAGAGAA
15796956 A
1 A
15796957 AATTTCTGTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (81 bp):
ATAAATAGAAGATGAAGCCTGACTTTTTGAGGAGACTGGGAGATTTTTAGACAGCCGCCAAGAGC
TTAAAAATTCAGAGAA
Found at i:15799731 original size:23 final size:22
Alignment explanation
Indices: 15799701--15799780 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 22
15799691 ACACTAGACA
15799701 GTGCATCGATGCATCCCTTGAAT
1 GTGCATCGATGCAT-CCTTGAAT
* *
15799724 GTGCATCGATACAT-CATGAA-
1 GTGCATCGATGCATCCTTGAAT
*
15799744 GATGCACCGATGCATTCCTTGAAT
1 G-TGCATCGATGCA-TCCTTGAAT
*
15799768 GTGCATTGATGCA
1 GTGCATCGATGCA
15799781 CTCTACTGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
20 1 0.02
21 15 0.33
22 1 0.02
23 28 0.61
24 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:15800294 original size:13 final size:12
Alignment explanation
Indices: 15800276--15800323 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
15800266 TTGGAACATT
15800276 TTTTTCAAAATAA
1 TTTTTCAAAAT-A
*
15800289 TTTTTCAAACATT
1 TTTTTCAAA-ATA
*
15800302 TTTTTCTAAATA
1 TTTTTCAAAATA
*
15800314 TTATTCAAAA
1 TTTTTCAAAA
15800324 CTATGCCCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 10 0.34
13 17 0.59
14 2 0.07
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTTTCAAAATA
Found at i:15800324 original size:26 final size:26
Alignment explanation
Indices: 15800270--15800322 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15800260 TTATTGTTGG
*
15800270 AACATTTTTTTCAAAATAATTTTTCA
1 AACATTTTTTTCAAAATAATTATTCA
*
15800296 AACATTTTTTTCTAAAT-ATTATTCA
1 AACATTTTTTTCAAAATAATTATTCA
15800321 AA
1 AA
15800323 ACTATGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (26 bp):
AACATTTTTTTCAAAATAATTATTCA
Found at i:15802453 original size:55 final size:55
Alignment explanation
Indices: 15802369--15802488 Score: 231
Period size: 55 Copynumber: 2.2 Consensus size: 55
15802359 AAAGGGATGT
15802369 ACCGATGCACTCATTAATGCATCGATGCACACCCCATTTCGAATGCATTTTATGC
1 ACCGATGCACTCATTAATGCATCGATGCACACCCCATTTCGAATGCATTTTATGC
15802424 ACCGATGCACTCATTAATGCATCGATGCACACCCCATTTCGAATGCATTTTATGC
1 ACCGATGCACTCATTAATGCATCGATGCACACCCCATTTCGAATGCATTTTATGC
*
15802479 ATCGATGCAC
1 ACCGATGCAC
15802489 AAACCATGCA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (55 bp):
ACCGATGCACTCATTAATGCATCGATGCACACCCCATTTCGAATGCATTTTATGC
Found at i:15811362 original size:40 final size:41
Alignment explanation
Indices: 15811302--15811382 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
15811292 AGAATAAGGA
*
15811302 TCAAAGTAATTATTCAGTAGAGTC-TTTGCCTTATAATGAG
1 TCAAAGTAACTATTCAGTAGAGTCATTTGCCTTATAATGAG
**
15811342 TCAAAGTAACTATTTGGTAGAGTCTATTTGCCTTATAATGA
1 TCAAAGTAACTATTCAGTAGAGTC-ATTTGCCTTATAATGA
15811383 AATGTTAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 21 0.58
42 15 0.42
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (41 bp):
TCAAAGTAACTATTCAGTAGAGTCATTTGCCTTATAATGAG
Found at i:15828536 original size:41 final size:41
Alignment explanation
Indices: 15828479--15828642 Score: 229
Period size: 41 Copynumber: 4.0 Consensus size: 41
15828469 ACACGTTGGG
* *
15828479 ACAGCTTAGTGGAGCATTTAAAAGACATATACAGCTTACAA
1 ACAGCTTAGTGGAGCATTTAGAAGACATATACAGCTCACAA
*
15828520 ACAGCTTAGTGGAGCATTTGGAAGACATATACAGCTCACAA
1 ACAGCTTAGTGGAGCATTTAGAAGACATATACAGCTCACAA
* * * **
15828561 ACAACTTAGTGGAGCATTTGGAAGACATATACAACTCGTAA
1 ACAGCTTAGTGGAGCATTTAGAAGACATATACAGCTCACAA
* **
15828602 ATAGCTTAGTGGATAATTTAGAAGACATATACAGCTCACAA
1 ACAGCTTAGTGGAGCATTTAGAAGACATATACAGCTCACAA
15828643 TCGAACCAAC
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 108 1.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (41 bp):
ACAGCTTAGTGGAGCATTTAGAAGACATATACAGCTCACAA
Found at i:15829633 original size:38 final size:38
Alignment explanation
Indices: 15829582--15829662 Score: 162
Period size: 38 Copynumber: 2.1 Consensus size: 38
15829572 ACCATAGCCC
15829582 TAACAATCATCTTCAGCTACCATCTCTTATTTATTAAA
1 TAACAATCATCTTCAGCTACCATCTCTTATTTATTAAA
15829620 TAACAATCATCTTCAGCTACCATCTCTTATTTATTAAA
1 TAACAATCATCTTCAGCTACCATCTCTTATTTATTAAA
15829658 TAACA
1 TAACA
15829663 TACCATTTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.38
Consensus pattern (38 bp):
TAACAATCATCTTCAGCTACCATCTCTTATTTATTAAA
Found at i:15829867 original size:11 final size:11
Alignment explanation
Indices: 15829851--15829875 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15829841 AATACAAAAA
15829851 GAAGTGCAAGT
1 GAAGTGCAAGT
15829862 GAAGTGCAAGT
1 GAAGTGCAAGT
15829873 GAA
1 GAA
15829876 AGAAAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.36, T:0.16
Consensus pattern (11 bp):
GAAGTGCAAGT
Found at i:15831308 original size:10 final size:10
Alignment explanation
Indices: 15831293--15831319 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
15831283 CCTGGTTTGA
15831293 TATTTTGAGT
1 TATTTTGAGT
15831303 TATTTTGAGT
1 TATTTTGAGT
15831313 TATTTTG
1 TATTTTG
15831320 CAGCAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.63
Consensus pattern (10 bp):
TATTTTGAGT
Found at i:15832512 original size:41 final size:41
Alignment explanation
Indices: 15832455--15832614 Score: 275
Period size: 41 Copynumber: 3.9 Consensus size: 41
15832445 GTTTGGACAG
*
15832455 CTTAGTGGAGCATTTGGAAGACATATACAACTTACAAACAA
1 CTTAGTGGAGCATTTGGAAGACATATACAACTCACAAACAA
15832496 CTTAGTGGAGCATTTGGAAGACATATACAACTCACAAACAA
1 CTTAGTGGAGCATTTGGAAGACATATACAACTCACAAACAA
* * *
15832537 TTTAGTGGAGCATTTGGAAGACATATACAACTCATAAACAG
1 CTTAGTGGAGCATTTGGAAGACATATACAACTCACAAACAA
*
15832578 CTTAGTGGAGCATTTGGAAGACATATACAGCTCACAA
1 CTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
15832615 TCGAACCAGC
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 112 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (41 bp):
CTTAGTGGAGCATTTGGAAGACATATACAACTCACAAACAA
Found at i:15835474 original size:20 final size:20
Alignment explanation
Indices: 15835449--15835489 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
15835439 TTAAACTATG
15835449 CTTGAATAATCATATGTTAT
1 CTTGAATAATCATATGTTAT
15835469 CTTGAATAATCATATGTTAT
1 CTTGAATAATCATATGTTAT
15835489 C
1 C
15835490 ATTCACTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (20 bp):
CTTGAATAATCATATGTTAT
Found at i:15836207 original size:41 final size:41
Alignment explanation
Indices: 15836150--15836313 Score: 265
Period size: 41 Copynumber: 4.0 Consensus size: 41
15836140 ACACGTTGGG
* *
15836150 ACAGCTTAGTGGAGCATTTGGAAGACATATACATCTTACAA
1 ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
15836191 ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
1 ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
* * * *
15836232 ACAACCTAGTGGAGTATTTGGAAGACATATACAGCTCACAA
1 ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
*
15836273 ATAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
1 ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
15836314 CTGAACCAGT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 112 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (41 bp):
ACAGCTTAGTGGAGCATTTGGAAGACATATACAACTCACAA
Found at i:15837263 original size:13 final size:13
Alignment explanation
Indices: 15837220--15837264 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
15837210 ACTTTGTGAA
15837220 TTGTGTCTCAAAG
1 TTGTGTCTCAAAG
* *
15837233 TTGTCTCCCAAAG
1 TTGTGTCTCAAAG
15837246 TTGTGTCTCAAAG
1 TTGTGTCTCAAAG
15837259 TTGTGT
1 TTGTGT
15837265 TTAAGATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (13 bp):
TTGTGTCTCAAAG
Found at i:15838853 original size:20 final size:20
Alignment explanation
Indices: 15838828--15838872 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
15838818 TAACTGATGA
*
15838828 TTCCATCAGTTATTGATCTC
1 TTCCATCAGTTATTGATATC
15838848 TTCCATCAGTTATTGATATC
1 TTCCATCAGTTATTGATATC
15838868 TTCCA
1 TTCCA
15838873 ATAGTGATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (20 bp):
TTCCATCAGTTATTGATATC
Found at i:15839230 original size:57 final size:57
Alignment explanation
Indices: 15839138--15839309 Score: 229
Period size: 57 Copynumber: 3.0 Consensus size: 57
15839128 GTTGGAGGAA
* * * * * *
15839138 GAATACTTGCAGGTTCCTCGACTTTGTACTAAGAGCCTTACTGTTCGTGATGAGGTT
1 GAATACTTGCAGATTCCTTGGCTTTGTGCTAAGAGCCTTACTGTTTGTGATGGGGTT
* * *
15839195 GAATACTTGCAGACTCCTTGGCTTTGTGCTGAGAGCCTTACTGTTTGTGACGGGGTT
1 GAATACTTGCAGATTCCTTGGCTTTGTGCTAAGAGCCTTACTGTTTGTGATGGGGTT
* *
15839252 GAATACTTGCA-AGTTCCTTGGCTTTGTGCTCAGGGCCTTACTGTTTGTGATGGGGTT
1 GAATACTTGCAGA-TTCCTTGGCTTTGTGCTAAGAGCCTTACTGTTTGTGATGGGGTT
15839309 G
1 G
15839310 TATGGTTATG
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 1 0.01
57 100 0.99
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (57 bp):
GAATACTTGCAGATTCCTTGGCTTTGTGCTAAGAGCCTTACTGTTTGTGATGGGGTT
Found at i:15841386 original size:17 final size:18
Alignment explanation
Indices: 15841366--15841406 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
15841356 ATGGCCTACT
*
15841366 GTTGACCT-TTGACCTGC
1 GTTGACCTGTTGACCGGC
15841383 GTTGA-CTGTTGACCGGC
1 GTTGACCTGTTGACCGGC
15841400 GTTGACC
1 GTTGACC
15841407 AGAACTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 18 0.86
18 1 0.05
ACGTcount: A:0.12, C:0.27, G:0.29, T:0.32
Consensus pattern (18 bp):
GTTGACCTGTTGACCGGC
Found at i:15844009 original size:57 final size:57
Alignment explanation
Indices: 15843913--15844027 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
15843903 GTTGGAGGAA
15843913 GAATACTTGCAGGTTCCTCGACTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGACTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * * *
15843970 GAATACTTGCAGGTTCCTTGGCTTTGTGCTTAG-GTCCTTACTGTTTGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGACTTTGTGCTGAGAG-CCTTACTGTTCGTGACGGGGTT
15844027 G
1 G
15844028 TATGGTTATG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 1 0.02
57 52 0.98
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.37
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTCGACTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
Found at i:15855250 original size:20 final size:20
Alignment explanation
Indices: 15855225--15855350 Score: 61
Period size: 20 Copynumber: 6.5 Consensus size: 20
15855215 CGAATGAGGT
15855225 AGTATCGATACCATGGTAAG
1 AGTATCGATACCATGGTAAG
*
15855245 AGTATCAATACCA-GGT-A-
1 AGTATCGATACCATGGTAAG
* * **
15855262 A-CATCGA-ACC-TAGTTTTG
1 AGTATCGATACCAT-GGTAAG
* *
15855280 -GTATCGATACCAT-ATAGG
1 AGTATCGATACCATGGTAAG
* * *
15855298 GGTATCGGTACCATAGTATAG
1 AGTATCGATACCATGGTA-AG
*
15855319 TAGTATTGATACCATGGTAAG
1 -AGTATCGATACCATGGTAAG
*
15855340 GGTATCGATAC
1 AGTATCGATAC
15855351 TAGACCACAT
Statistics
Matches: 77, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
15 3 0.04
16 6 0.08
17 1 0.01
18 8 0.10
19 18 0.23
20 24 0.31
21 3 0.04
22 14 0.18
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (20 bp):
AGTATCGATACCATGGTAAG
Found at i:15855821 original size:59 final size:58
Alignment explanation
Indices: 15855746--15856151 Score: 544
Period size: 59 Copynumber: 6.9 Consensus size: 58
15855736 GATTACCAGA
* *
15855746 AGGGCACTTCGTGTGCTAAAATGTCAAGGAATTCATACTAAGTGTATGAATTCCCATAT
1 AGGGCACTTCGTGTGCTAACATGT-AAGGAATTCATACTAAGTGTATGAATTTCCATAT
* *
15855805 AGGGAACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * *
15855864 AGGGCGCTTCATGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTTCATAT
1 AGGGCACTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* *
15855923 AGGGCGCTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* ** * *
15855982 AGGGCACTCCGTGTAATAAAATGATAAAGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* *
15856041 AGGGCACTCCGTGTGCTAACATGATAAGGAATTCATACTAAGTGTATGAATCTCCATAT
1 AGGGCACTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * *
15856100 TGGGCACCTT-GTGTGCTAAAATGATAAGGAATTTATATTAAGTGTATGAATT
1 AGGGCA-CTTCGTGTGCTAACATG-TAAGGAATTCATACTAAGTGTATGAATT
15856152 CCCGTATGGG
Statistics
Matches: 317, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
59 315 0.99
60 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31
Consensus pattern (58 bp):
AGGGCACTTCGTGTGCTAACATGTAAGGAATTCATACTAAGTGTATGAATTTCCATAT
Found at i:15855901 original size:118 final size:118
Alignment explanation
Indices: 15855746--15856163 Score: 608
Period size: 118 Copynumber: 3.6 Consensus size: 118
15855736 GATTACCAGA
15855746 AGGGCACTTCGTGTGCTAAAATG-TCAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGA
1 AGGGCACTTCGTGTGCTAAAATGAT-AAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGA
15855810 ACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
65 ACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * * ** **
15855864 AGGGCGCTTCATGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTTCATATAGGGCG
1 AGGGCACTTCGTGTGCTAAAATGATAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
15855929 CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
66 CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* ** * * *
15855982 AGGGCACTCCGTGTAATAAAATGATAAAGAATTCATACTAAGTGTATGAATTTCCATATAGGGCA
1 AGGGCACTTCGTGTGCTAAAATGATAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
* * *
15856047 CTCCGTGTGCTAACATGATAAGGAATTCATACTAAGTGTATGAATCTCCATAT
66 CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * *
15856100 TGGGCACCTT-GTGTGCTAAAATGATAAGGAATTTATATTAAGTGTATGAATTCCCGTAT-GGGA
1 AGGGCA-CTTCGTGTGCTAAAATGATAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGA
15856163 A
65 A
15856164 ATGTATGTGT
Statistics
Matches: 267, Mismatches: 31, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
117 4 0.01
118 261 0.98
119 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (118 bp):
AGGGCACTTCGTGTGCTAAAATGATAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
Found at i:15856058 original size:177 final size:177
Alignment explanation
Indices: 15855746--15856163 Score: 606
Period size: 177 Copynumber: 2.4 Consensus size: 177
15855736 GATTACCAGA
*
15855746 AGGGCACTTCGTGTGCTAAAATGTCAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
1 AGGGCACTTCGTGTGCTAAAATGACAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
* ** * * * *
15855811 CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATATAGGGCGCTTCAT
66 CTCCGTGTAATAAAATGAGAAAGAATTCATACTAAGTGTATGAATTTCCATATAGGGCACTCCAT
* *
15855876 GTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTTCATAT
131 GTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATCTCCATAT
* * * * *
15855923 AGGGCGCTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATATAGGGCA
1 AGGGCACTTCGTGTGCTAAAATGACAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
* *
15855988 CTCCGTGTAATAAAATGATAAAGAATTCATACTAAGTGTATGAATTTCCATATAGGGCACTCCGT
66 CTCCGTGTAATAAAATGAGAAAGAATTCATACTAAGTGTATGAATTTCCATATAGGGCACTCCAT
*
15856053 GTGCTAACATGATAAGGAATTCATACTAAGTGTATGAATCTCCATAT
131 GTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATCTCCATAT
* * * * *
15856100 TGGGCACCTT-GTGTGCTAAAATGATAAGGAATTTATATTAAGTGTATGAATTCCCGTAT-GGGA
1 AGGGCA-CTTCGTGTGCTAAAATGACAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGA
15856163 A
65 A
15856164 ATGTATGTGT
Statistics
Matches: 213, Mismatches: 27, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
176 4 0.02
177 206 0.97
178 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (177 bp):
AGGGCACTTCGTGTGCTAAAATGACAAGGAATTCATACTAAGTGTATGAATTCCCATATAGGGAA
CTCCGTGTAATAAAATGAGAAAGAATTCATACTAAGTGTATGAATTTCCATATAGGGCACTCCAT
GTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATCTCCATAT
Found at i:15858940 original size:35 final size:35
Alignment explanation
Indices: 15858892--15858959 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
15858882 TAAACTAAAA
* * *
15858892 AATAAATTCATTCATCAAGTGACATGACTTATTAT
1 AATAAATTCATTCACCAAATGACATAACTTATTAT
15858927 AATAAA-TCTATTCACCAAATGACATAACTTATT
1 AATAAATTC-ATTCACCAAATGACATAACTTATT
15858960 GTAAATAGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 2 0.07
35 27 0.93
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (35 bp):
AATAAATTCATTCACCAAATGACATAACTTATTAT
Found at i:15869503 original size:55 final size:55
Alignment explanation
Indices: 15869435--15869546 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
15869425 AACATTATGT
15869435 TATTGTATTATCGATTGTTAATGTCGAGTATTCATTTTGTAACAAACGATTCAAC
1 TATTGTATTATCGATTGTTAATGTCGAGTATTCATTTTGTAACAAACGATTCAAC
15869490 TATTGTATTATCGATTGTTAATGTCGAGTATTCATTTTGTAACAAACGATTCAAC
1 TATTGTATTATCGATTGTTAATGTCGAGTATTCATTTTGTAACAAACGATTCAAC
15869545 TA
1 TA
15869547 CTGAATTACT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.42
Consensus pattern (55 bp):
TATTGTATTATCGATTGTTAATGTCGAGTATTCATTTTGTAACAAACGATTCAAC
Found at i:15881904 original size:11 final size:11
Alignment explanation
Indices: 15881881--15881923 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
15881871 TTAGACATTC
15881881 ATTAATA-TTT
1 ATTAATATTTT
15881891 ATTAATATTTT
1 ATTAATATTTT
15881902 ATTAATATTATT
1 ATTAATATT-TT
*
15881914 -TTTATATTTT
1 ATTAATATTTT
15881924 CTCACTCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 9 0.30
11 19 0.63
12 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:15882409 original size:28 final size:28
Alignment explanation
Indices: 15882369--15882423 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
15882359 AAGAAAGTCA
15882369 GTGAAAGGATTTAGGAATTGAGTTGTTG
1 GTGAAAGGATTTAGGAATTGAGTTGTTG
15882397 GTGAAAGGATTTAGGAATTGAGTTGTT
1 GTGAAAGGATTTAGGAATTGAGTTGTT
15882424 TTGTTTGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.36
Consensus pattern (28 bp):
GTGAAAGGATTTAGGAATTGAGTTGTTG
Found at i:15885086 original size:33 final size:34
Alignment explanation
Indices: 15885025--15885124 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
15885015 AAATTTAATG
*
15885025 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
15885059 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
15885092 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
15885125 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:15885732 original size:21 final size:21
Alignment explanation
Indices: 15885644--15885737 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
15885634 TATGGTATAA
*
15885644 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
15885665 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
15885686 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
15885707 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
15885728 AACCCTGCGG
1 AACCCTGCGG
15885738 AGATGGCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 3 0.04
21 63 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:15885767 original size:21 final size:21
Alignment explanation
Indices: 15885741--15885788 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
15885731 CCTGCGGAGA
*
15885741 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
15885762 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
15885783 GGGCAT
1 TGGCAT
15885789 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:15887530 original size:14 final size:15
Alignment explanation
Indices: 15887513--15887582 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 15
15887503 ATAATTCTAA
15887513 ATAAATAATATT-AT
1 ATAAATAATATTAAT
*
15887527 ATAAATATTATTTTAAT
1 ATAAATA--ATATTAAT
* * *
15887544 AAAAAATAATATTTAC
1 -ATAAATAATATTAAT
15887560 ATAAAT-ATATTAAT
1 ATAAATAATATTAAT
15887574 ATAAA-AATA
1 ATAAATAATA
15887583 ATAACTATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
14 21 0.49
15 5 0.12
16 9 0.21
17 2 0.05
18 6 0.14
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAAATAATATTAAT
Found at i:15887531 original size:18 final size:17
Alignment explanation
Indices: 15887510--15887585 Score: 58
Period size: 16 Copynumber: 4.8 Consensus size: 17
15887500 TTAATAATTC
15887510 TAAATAAATAATATTATA
1 TAAATAAATAATATTA-A
* *
15887528 TAAAT--ATTATTTTAA
1 TAAATAAATAATATTAA
15887543 TAAA-AAATAATATT--
1 TAAATAAATAATATTAA
*
15887557 TACATAAAT-ATATTAA
1 TAAATAAATAATATTAA
15887573 TATAA-AAATAATA
1 TA-AATAAATAATA
15887586 ACTATTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
14 8 0.18
15 9 0.20
16 19 0.42
17 4 0.09
18 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATAAATAATATTAA
Found at i:15887556 original size:32 final size:30
Alignment explanation
Indices: 15887510--15887585 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 30
15887500 TTAATAATTC
*
15887510 TAAATAAATAATA-TTATATAAATATTATTTTAA
1 TAAA-AAATAATATTTACATAAATA-TA--TTAA
15887543 TAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAATAATATTTACATAAATATATTAA
15887573 TATAAAAATAATA
1 TA-AAAAATAATA
15887586 ACTATTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 6 0.15
31 10 0.25
32 10 0.25
33 14 0.35
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAAAAATAATATTTACATAAATATATTAA
Found at i:15887616 original size:33 final size:34
Alignment explanation
Indices: 15887544--15887616 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
15887534 TTATTTTAAT
* * *
15887544 AAAA-AATAATATTTACATAAATATATTAATATA
1 AAAATAATAATATTTACATAAAAATACTAACATA
15887577 AAAATAATAACTATTTA-A-AAAAATACTAACATA
1 AAAATAATAA-TATTTACATAAAAATACTAACATA
15887610 AAAATAA
1 AAAATAA
15887617 ATTTCTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 23 0.66
34 6 0.17
35 6 0.17
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (34 bp):
AAAATAATAATATTTACATAAAAATACTAACATA
Found at i:15889115 original size:2 final size:2
Alignment explanation
Indices: 15889108--15889163 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
15889098 AAATCAGTGA
*
15889108 AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15889150 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
15889164 CCTCAATTAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15894201 original size:35 final size:36
Alignment explanation
Indices: 15894120--15894216 Score: 96
Period size: 35 Copynumber: 2.8 Consensus size: 36
15894110 ATAACATTGA
* *
15894120 ATAT-AATGTATGTGATAT-ATATATGTGTTTTGTG
1 ATATGAATGTATATGATATGATATATGTGTTTAGTG
15894154 ATATGAAT-TATATGATATGATATATGTGTGTTAGTG
1 ATATGAATGTATATGATATGATATATGTGT-TTAGTG
* *
15894190 AT-T-ATTGTATATGTTATAAGATATATG
1 ATATGAATGTATATG--ATATGATATATG
15894217 ATATGAACAT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
34 15 0.28
35 20 0.38
36 7 0.13
37 11 0.21
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (36 bp):
ATATGAATGTATATGATATGATATATGTGTTTAGTG
Found at i:15896239 original size:21 final size:21
Alignment explanation
Indices: 15896215--15896257 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
15896205 AGGACTAGTG
*
15896215 ATTT-AAATGTAAGTTTTGGAA
1 ATTTGAAATCTAA-TTTTGGAA
*
15896236 ATTTGAAGTCTAATTTTGGAA
1 ATTTGAAATCTAATTTTGGAA
15896257 A
1 A
15896258 GATTGGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (21 bp):
ATTTGAAATCTAATTTTGGAA
Found at i:15897673 original size:23 final size:22
Alignment explanation
Indices: 15897647--15897713 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
15897637 CTCGTATAAA
15897647 TGCACCAAAGTGCCCCGTAGAAT
1 TGCACCAAAGTG-CCCGTAGAAT
*
15897670 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCAAAGTGCCCGTAGAAT
*
15897692 TGCACCATAGTGCCCGTAGAAT
1 TGCACCAAAGTGCCCGTAGAAT
15897714 GATGTCCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 30 0.73
23 11 0.27
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.19
Consensus pattern (22 bp):
TGCACCAAAGTGCCCGTAGAAT
Found at i:15899399 original size:21 final size:21
Alignment explanation
Indices: 15899375--15899419 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
15899365 TCTTGTTCGT
* *
15899375 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
15899396 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
15899417 TTG
1 TTG
15899420 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:15902601 original size:22 final size:22
Alignment explanation
Indices: 15902560--15902626 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
15902550 CTCGTATAAA
15902560 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
15902583 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
15902605 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
15902627 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:15904333 original size:21 final size:20
Alignment explanation
Indices: 15904290--15904329 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15904280 TCTTGTTCGT
* *
15904290 TTGAAGGGGTATCGGTTCCC
1 TTGAAGGGGTACCGATTCCC
*
15904310 TTGAATGGGTACCGATTCCC
1 TTGAAGGGGTACCGATTCCC
15904330 CTTGCCCAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (20 bp):
TTGAAGGGGTACCGATTCCC
Found at i:15907981 original size:32 final size:31
Alignment explanation
Indices: 15907918--15908003 Score: 113
Period size: 32 Copynumber: 2.7 Consensus size: 31
15907908 GTATCATGAA
*
15907918 AATAAATATTAGAAAAAATTGAGCCTATAAT
1 AATAAATATTAGAAAAAATTGACCCTATAAT
15907949 AATAAATATTAGAGAAAAATTGAACCCT-TAAT
1 AATAAATATTAGA-AAAAATTG-ACCCTATAAT
*
15907981 AATAGATATTA-AAATAAATTGAC
1 AATAAATATTAGAAA-AAATTGAC
15908004 TCTAACTAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
30 4 0.08
31 20 0.40
32 22 0.44
33 4 0.08
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.29
Consensus pattern (31 bp):
AATAAATATTAGAAAAAATTGACCCTATAAT
Found at i:15908211 original size:32 final size:31
Alignment explanation
Indices: 15908148--15908247 Score: 121
Period size: 32 Copynumber: 3.1 Consensus size: 31
15908138 ATGTCATGAA
*
15908148 AATAAATATTAGAAAAAATTGAGCCTATAAT
1 AATAAATATTAGAAAAAATTGACCCTATAAT
15908179 AATAAATATTAGAGAAAAATTGAACCCT-TAAT
1 AATAAATATTAGA-AAAAATTG-ACCCTATAAT
* * *
15908211 AATAGATATTAAAAATAAATTGACTCTATAACT
1 AATAAATATTAGAAA-AAATTGACCCTATAA-T
15908244 AATA
1 AATA
15908248 TAAATTTTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
31 19 0.32
32 32 0.53
33 9 0.15
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (31 bp):
AATAAATATTAGAAAAAATTGACCCTATAAT
Found at i:15909615 original size:21 final size:21
Alignment explanation
Indices: 15909591--15909651 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
15909581 AAACATCTAC
15909591 CAAACTTTGAAAAACATTTTT
1 CAAACTTTGAAAAACATTTTT
**
15909612 CAAA----G--AAACATTTAC
1 CAAACTTTGAAAAACATTTTT
15909627 CAAACTTTGAAAAACATTTTT
1 CAAACTTTGAAAAACATTTTT
15909648 CAAA
1 CAAA
15909652 GTTGGTTGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
15 12 0.40
17 1 0.03
19 1 0.03
21 16 0.53
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.31
Consensus pattern (21 bp):
CAAACTTTGAAAAACATTTTT
Found at i:15909628 original size:36 final size:36
Alignment explanation
Indices: 15909573--15909652 Score: 135
Period size: 36 Copynumber: 2.2 Consensus size: 36
15909563 CCCATTCATA
*
15909573 TTTTC-AACAAACATCTACCAAACTTTGAAAAACAT
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACAT
*
15909608 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACAT
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACAT
15909644 TTTTCAAAG
1 TTTTCAAAG
15909653 TTGGTTGCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 5 0.12
36 37 0.88
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (36 bp):
TTTTCAAAGAAACATCTACCAAACTTTGAAAAACAT
Found at i:15913043 original size:16 final size:17
Alignment explanation
Indices: 15913015--15913050 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
15913005 CGTATCGTCG
15913015 ACAAAATTTCACTATTC
1 ACAAAATTTCACTATTC
15913032 ACAAAA-TTCACTATTC
1 ACAAAATTTCACTATTC
15913048 ACA
1 ACA
15913051 TTAATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (17 bp):
ACAAAATTTCACTATTC
Found at i:15913519 original size:21 final size:21
Alignment explanation
Indices: 15913495--15913555 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
15913485 TAAACTTTAC
15913495 CAAACTTTGAAAAACATTTTT
1 CAAACTTTGAAAAACATTTTT
**
15913516 CAAA----G--AAACATTTAC
1 CAAACTTTGAAAAACATTTTT
15913531 CAAACTTTGAAAAACATTTTT
1 CAAACTTTGAAAAACATTTTT
15913552 CAAA
1 CAAA
15913556 GTTGGTTGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
15 12 0.40
17 1 0.03
19 1 0.03
21 16 0.53
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.31
Consensus pattern (21 bp):
CAAACTTTGAAAAACATTTTT
Found at i:15913531 original size:36 final size:35
Alignment explanation
Indices: 15913486--15913556 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 35
15913476 AACATCTACT
15913486 AAACTTTACCAAACTTTGAAAAACATTTTTCAAAG
1 AAACTTTACCAAACTTTGAAAAACATTTTTCAAAG
15913521 AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG
1 AAAC-TTTACCAAACTTTGAAAAACATTTTTCAAAG
15913557 TTGGTTGCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 4 0.11
36 31 0.89
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (35 bp):
AAACTTTACCAAACTTTGAAAAACATTTTTCAAAG
Found at i:15918146 original size:39 final size:39
Alignment explanation
Indices: 15918085--15918244 Score: 211
Period size: 38 Copynumber: 4.2 Consensus size: 39
15918075 ATATTGATTA
* *
15918085 AGCACTTC-GATGC-ATATGGTGGGCACGACCATATGTGT
1 AGCACTTCAG-TGCAATATAGTGGGCACGACCTTATGTGT
* *
15918123 AGCATTTCAGTGCAAAATAGTGGGCACGACCTTATGTGT
1 AGCACTTCAGTGCAATATAGTGGGCACGACCTTATGTGT
15918162 AGCACTTCAGTGC-ATATAGTGGGCACGACCTTATGTGT
1 AGCACTTCAGTGCAATATAGTGGGCACGACCTTATGTGT
** *
15918200 AGCACTTC-GTTTAATATGGTGGGCACGACCTTATGTGT
1 AGCACTTCAGTGCAATATAGTGGGCACGACCTTATGTGT
15918238 AAGCACT
1 -AGCACT
15918245 ACGGTGCATA
Statistics
Matches: 109, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
37 2 0.02
38 66 0.61
39 41 0.38
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (39 bp):
AGCACTTCAGTGCAATATAGTGGGCACGACCTTATGTGT
Found at i:15918243 original size:77 final size:77
Alignment explanation
Indices: 15918083--15918256 Score: 235
Period size: 77 Copynumber: 2.2 Consensus size: 77
15918073 GCATATTGAT
* *
15918083 TAAGCACTTCGATGCATATGGTGGGCACGACCATATGTGTAGCATTTCAGTGCAAAATAGTGGGC
1 TAAGCACTTCG-TGCATATAGTGGGCACGACCATATGTGTAGCACTTCAGTGCAAAATAGTGGGC
15918148 ACGACCTTATGTG
65 ACGACCTTATGTG
* ** * *
15918161 T-AGCACTTCAGTGCATATAGTGGGCACGACCTTATGTGTAGCACTTC-GTTTAATATGGTGGGC
1 TAAGCACTTC-GTGCATATAGTGGGCACGACCATATGTGTAGCACTTCAGTGCAAAATAGTGGGC
15918224 ACGACCTTATGTG
65 ACGACCTTATGTG
*
15918237 TAAGCACTACGGTGCATATA
1 TAAGCACTTC-GTGCATATA
15918257 TTTGACTCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
76 26 0.31
77 57 0.67
78 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (77 bp):
TAAGCACTTCGTGCATATAGTGGGCACGACCATATGTGTAGCACTTCAGTGCAAAATAGTGGGCA
CGACCTTATGTG
Found at i:15920690 original size:25 final size:25
Alignment explanation
Indices: 15920662--15920743 Score: 164
Period size: 25 Copynumber: 3.3 Consensus size: 25
15920652 ATGTGCTAAT
15920662 GTGACAGTCCACAGTGAATGATGAA
1 GTGACAGTCCACAGTGAATGATGAA
15920687 GTGACAGTCCACAGTGAATGATGAA
1 GTGACAGTCCACAGTGAATGATGAA
15920712 GTGACAGTCCACAGTGAATGATGAA
1 GTGACAGTCCACAGTGAATGATGAA
15920737 GTGACAG
1 GTGACAG
15920744 AGGAATTAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (25 bp):
GTGACAGTCCACAGTGAATGATGAA
Found at i:15920920 original size:21 final size:22
Alignment explanation
Indices: 15920894--15920938 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
15920884 TTAAAATTAA
*
15920894 AACTAAAATACTAACAAAT-TT
1 AACTAAAATACTAAAAAATATT
15920915 AACTAAAATACTAAAAAATATT
1 AACTAAAATACTAAAAAATATT
15920937 AA
1 AA
15920939 AAATTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (22 bp):
AACTAAAATACTAAAAAATATT
Found at i:15921292 original size:32 final size:32
Alignment explanation
Indices: 15921215--15921298 Score: 77
Period size: 32 Copynumber: 2.7 Consensus size: 32
15921205 GGGCCAAAGT
*
15921215 CTCCCA-AAAATTTT-AAAATTTATGATTTAG
1 CTCCCATAAAATTTTAAAAATTTATAATTTAG
* * *
15921245 AT-CCTTAAATTTTTTAAAAATTT-TAATTTAG
1 CTCCCATAAA-ATTTTAAAAATTTATAATTTAG
*
15921276 CTCCCATAAAACTTTTAGAAATT
1 CTCCCATAAAA-TTTTAAAAATT
15921299 CAAATTAAGT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
29 2 0.05
30 4 0.10
31 12 0.29
32 23 0.56
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (32 bp):
CTCCCATAAAATTTTAAAAATTTATAATTTAG
Found at i:15923674 original size:23 final size:23
Alignment explanation
Indices: 15923642--15923691 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
15923632 TTTGGCGATA
* *
15923642 ATGTTTGCAAACGATAAATGAAC
1 ATGTTGGCAAACGATAAACGAAC
* *
15923665 ATGTTGGCAAACGTTACACGAAC
1 ATGTTGGCAAACGATAAACGAAC
15923688 ATGT
1 ATGT
15923692 CACGAACGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (23 bp):
ATGTTGGCAAACGATAAACGAAC
Found at i:15925708 original size:11 final size:10
Alignment explanation
Indices: 15925692--15925726 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
15925682 TAATTCTATC
15925692 AATTTAATCTT
1 AATTTAAT-TT
15925703 AATTTAAATTT
1 AATTT-AATTT
15925714 AATTTAATTT
1 AATTTAATTT
15925724 AAT
1 AAT
15925727 AAATTAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.35
11 12 0.52
12 3 0.13
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (10 bp):
AATTTAATTT
Done.