Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 69 of 73
Found at i:15925717 original size:5 final size:5
Alignment explanation
Indices: 15925692--15925726 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
15925682 TAATTCTATC
15925692 AATTT AATCTT AATTT AAATTT AATTT AATTT AAT
1 AATTT AAT-TT AATTT -AATTT AATTT AATTT AAT
15925727 AAATTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (5 bp):
AATTT
Found at i:15926205 original size:21 final size:23
Alignment explanation
Indices: 15926168--15926215 Score: 75
Period size: 21 Copynumber: 2.2 Consensus size: 23
15926158 TTAACAATAT
15926168 TATT-TATTTAAATAATATTTTA
1 TATTATATTTAAATAATATTTTA
15926190 TATTATATTT-AA-AATATTTTA
1 TATTATATTTAAATAATATTTTA
15926211 TATTA
1 TATTA
15926216 GATCTATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 14 0.56
22 6 0.24
23 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATATTTAAATAATATTTTA
Found at i:15926372 original size:16 final size:17
Alignment explanation
Indices: 15926343--15926437 Score: 65
Period size: 16 Copynumber: 5.8 Consensus size: 17
15926333 ATGAATAATA
*
15926343 ATATTAT-TAATATTTT
1 ATATTATATATTATTTT
* *
15926359 ATATTAGAT-TTATTTA
1 ATATTATATATTATTTT
* *
15926375 ATACTA-ATATTAATATT
1 ATATTATATATT-ATTTT
*
15926392 AT-TTATTTATTATTTT
1 ATATTATATATTATTTT
**
15926408 ATATTATAT-TTATTAA
1 ATATTATATATTATTTT
15926424 ATATTTATATATTA
1 ATA-TTATATATTA
15926438 AATATTAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
15 2 0.03
16 34 0.57
17 21 0.35
18 3 0.05
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (17 bp):
ATATTATATATTATTTT
Found at i:15926409 original size:38 final size:38
Alignment explanation
Indices: 15926336--15926490 Score: 99
Period size: 41 Copynumber: 4.1 Consensus size: 38
15926326 TATTTTTATG
*
15926336 AATAATAATATTATTAATATTTTATATTAGATTTATTT
1 AATAATAATATTAATAATATTTTATATTAGATTTATTT
* *
15926374 AATACTAATATTAATATTA-TTTAT-TT--A-TTATTT
1 AATAATAATATTAATAATATTTTATATTAGATTTATTT
* * * * *
15926407 TAT-ATTATATTTATTAAATATTTATATATTAAATATTA-GT
1 AATAATAATA-TTAAT-AATATTT-TATATTAGAT-TTATTT
* * *
15926447 AATAATATTATTAAATCACATATTGTATATTACATTTATTT
1 AATAATAATATT-AAT-A-ATATTTTATATTAGATTTATTT
15926488 AAT
1 AAT
15926491 GTTTTAGGTA
Statistics
Matches: 87, Mismatches: 17, Indels: 23
0.69 0.13 0.18
Matches are distributed among these distances:
32 4 0.05
33 12 0.14
34 4 0.05
35 2 0.02
36 5 0.06
37 7 0.08
38 16 0.18
39 1 0.01
40 8 0.09
41 23 0.26
42 5 0.06
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.54
Consensus pattern (38 bp):
AATAATAATATTAATAATATTTTATATTAGATTTATTT
Found at i:15926428 original size:26 final size:25
Alignment explanation
Indices: 15926344--15926455 Score: 65
Period size: 23 Copynumber: 4.5 Consensus size: 25
15926334 TGAATAATAA
* * *
15926344 TATTATTAATATTTTATATTAGATT
1 TATTAATATTATTTTATATTATATT
* *
15926369 TATTTAATACTAATATTA-A-TATTATT
1 TA-TTAATA-TTATTTTATATTA-TATT
15926395 TATT--TATTATTTTATATTATATT
1 TATTAATATTATTTTATATTATATT
*
15926418 TATTAA-A-TATTTATATATTAAATAT
1 TATTAATATTATTT-TATATTATAT-T
* *
15926443 TAGTAATAATATT
1 TATTAATATTATT
15926456 ATTAAATCAC
Statistics
Matches: 67, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
22 6 0.09
23 16 0.24
24 12 0.18
25 12 0.18
26 12 0.18
27 9 0.13
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (25 bp):
TATTAATATTATTTTATATTATATT
Found at i:15926433 original size:22 final size:23
Alignment explanation
Indices: 15926349--15926437 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 23
15926339 AATAATATTA
*
15926349 TTAATATTTTATATTAGATTTAT
1 TTAATATTTTATATTATATTTAT
** *
15926372 TTAATACTAATATTAATATTATTTAT
1 TTAATA-TTTTA-TATTA-TATTTAT
*
15926398 TTATTATTTTATATTATATTTAT
1 TTAATATTTTATATTATATTTAT
*
15926421 TAAATATTTATATATTA
1 TTAATATTT-TATATTA
15926438 AATATTAGTA
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
23 20 0.38
24 14 0.27
25 7 0.13
26 11 0.21
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (23 bp):
TTAATATTTTATATTATATTTAT
Found at i:15926436 original size:15 final size:14
Alignment explanation
Indices: 15926395--15926443 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
15926385 TAATATTATT
**
15926395 TATTTATTATTTTA
1 TATTTATTATTAAA
15926409 TATTATATTTATTAAA
1 TATT-TA-TTATTAAA
15926425 TATTTATATATTAAA
1 TATTTAT-TATTAAA
15926440 TATT
1 TATT
15926444 AGTAATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 5 0.17
15 15 0.50
16 10 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTATTATTAAA
Found at i:15928133 original size:63 final size:63
Alignment explanation
Indices: 15928079--15928240 Score: 207
Period size: 65 Copynumber: 2.5 Consensus size: 63
15928069 CGGTGCACCA
* *
15928079 AGTGTGCATCGATGCATGAAATGCATTCGATGTTGAAAATAGCCTGCGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTGAAAATAGCCAGAGTGCATCGATGCATGG
** * *
15928142 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATCCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG--TTGAAAATAGCCAGAGTGCATCGATGCATGG
** * * *
15928207 AGAATTCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
15928241 TCAATTAATT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
63 31 0.37
65 52 0.63
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (63 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:15934597 original size:20 final size:20
Alignment explanation
Indices: 15934555--15934597 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
15934545 TTGTTTTCAT
* *
15934555 TTTTTAATTTTGAAACATCA
1 TTTTTAATTTTGAAAAATAA
15934575 TTTTTATATTTT-AAAAATAA
1 TTTTTA-ATTTTGAAAAATAA
15934595 TTT
1 TTT
15934598 CTCATAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTTAATTTTGAAAAATAA
Found at i:15936564 original size:18 final size:18
Alignment explanation
Indices: 15936537--15936602 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
15936527 GCACCAAGTG
15936537 TGCA-TCGATGCATGAAA
1 TGCATTCGATGCATGAAA
**
15936554 TGCATTCGATGTTTGAAAA
1 TGCATTCGATGCATG-AAA
* * *
15936573 TAGCCTGCGATGCATCAAA
1 T-GCATTCGATGCATGAAA
15936592 TGCATTCGATG
1 TGCATTCGATG
15936603 TTTTGAAAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
17 4 0.11
18 16 0.43
19 8 0.22
20 9 0.24
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (18 bp):
TGCATTCGATGCATGAAA
Found at i:15936625 original size:38 final size:38
Alignment explanation
Indices: 15936543--15936626 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
15936533 AGTGTGCATC
* * *
15936543 GATGCATGAAATGCATTCGATGTTTGAAAATAGCCTGC
1 GATGCATCAAATGCATTCGATGTTTGAAAATAGCCAGA
*
15936581 GATGCATCAAATGCATTCGATGTTTTGAAAATATCCAGA
1 GATGCATCAAATGCATTCGATG-TTTGAAAATAGCCAGA
15936620 G-TGCATC
1 GATGCATC
15936627 GATGCATGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 27 0.66
39 14 0.34
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (38 bp):
GATGCATCAAATGCATTCGATGTTTGAAAATAGCCAGA
Found at i:15936652 original size:65 final size:64
Alignment explanation
Indices: 15936583--15936719 Score: 156
Period size: 65 Copynumber: 2.1 Consensus size: 64
15936573 TAGCCTGCGA
*
15936583 TGCATCAAATGCATTCGATGTTTTGAA-AATATC-C-AGAGTGCATCGATGCATGG-AGAATGCA
1 TGCATCAAATGCATTCGATG-TTTCAATAAT-TCACTA-A-TGCATCGATGCATGGTAG-ATGCA
15936644 TCGG
61 TCGG
** *
15936648 TGCATGGAATGCATTCGATGTTTCAATTAATTCACTAATGCATCGATGCATGGTTGATGCATCGG
1 TGCATCAAATGCATTCGATGTTTCAA-TAATTCACTAATGCATCGATGCATGGTAGATGCATCGG
15936713 TGCATCA
1 TGCATCA
15936720 CCTCAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
64 5 0.08
65 49 0.80
66 6 0.10
67 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (64 bp):
TGCATCAAATGCATTCGATGTTTCAATAATTCACTAATGCATCGATGCATGGTAGATGCATCGG
Found at i:15936659 original size:17 final size:19
Alignment explanation
Indices: 15936621--15936667 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
15936611 ATATCCAGAG
15936621 TGCATCGATGCATGGAGAA
1 TGCATCGATGCATGGAGAA
*
15936640 TGCATCGGTGCAT-G-GAA
1 TGCATCGATGCATGGAGAA
15936657 TGCATTCGATG
1 TGCA-TCGATG
15936668 TTTCAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.28
18 6 0.24
19 12 0.48
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (19 bp):
TGCATCGATGCATGGAGAA
Found at i:15937009 original size:14 final size:14
Alignment explanation
Indices: 15936986--15937015 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15936976 AATTCGAGTT
15936986 GACTCCAATAACTC
1 GACTCCAATAACTC
*
15937000 GACTCGAATAACTC
1 GACTCCAATAACTC
15937014 GA
1 GA
15937016 ATTTGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (14 bp):
GACTCCAATAACTC
Found at i:15940313 original size:2 final size:2
Alignment explanation
Indices: 15940306--15940345 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
15940296 TTTACTTTTA
15940306 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15940346 TAATTAGTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15941382 original size:16 final size:16
Alignment explanation
Indices: 15941354--15941394 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
15941344 TAGATCCAAC
*
15941354 GGCTGAAATTGCTGGT
1 GGCTGAGATTGCTGGT
*
15941370 GGTTGAGATTGCTGGT
1 GGCTGAGATTGCTGGT
15941386 GGCTGAGAT
1 GGCTGAGAT
15941395 GATGTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.17, C:0.10, G:0.41, T:0.32
Consensus pattern (16 bp):
GGCTGAGATTGCTGGT
Found at i:15941456 original size:21 final size:21
Alignment explanation
Indices: 15941425--15941504 Score: 83
Period size: 21 Copynumber: 3.9 Consensus size: 21
15941415 GGTGTTGGGT
*
15941425 CGGG-TCTGGATCTGGGCTTC
1 CGGGTTCTAGATCTGGGCTTC
* * * *
15941445 CGGGTTTTGGATCTAGGCCTC
1 CGGGTTCTAGATCTGGGCTTC
*
15941466 CGGGTTCTAGATCTTGG-TCTC
1 CGGGTTCTAGATCTGGGCT-TC
15941487 CGGGTTCTAGATCTGGGC
1 CGGGTTCTAGATCTGGGC
15941505 CTATAAAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 4 0.08
21 45 0.92
ACGTcount: A:0.09, C:0.24, G:0.35, T:0.33
Consensus pattern (21 bp):
CGGGTTCTAGATCTGGGCTTC
Found at i:15943946 original size:22 final size:25
Alignment explanation
Indices: 15943895--15943946 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 25
15943885 TTAAACTTTT
*
15943895 ATATTAAATTGATACTAAAATATTA
1 ATATTAAATTGATACTAAAATAATA
15943920 ATATTAAA-T-ATA-TAAAATAATA
1 ATATTAAATTGATACTAAAATAATA
*
15943942 TTATT
1 ATATT
15943947 TTGAATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.52
23 3 0.12
24 1 0.04
25 8 0.32
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
ATATTAAATTGATACTAAAATAATA
Found at i:15945413 original size:23 final size:23
Alignment explanation
Indices: 15945384--15945430 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
15945374 ATTTTAAATT
15945384 AAAAGGGTATTACCCTTAGTCCA
1 AAAAGGGTATTACCCTTAGTCCA
15945407 AAAAGGGTATTACCCTTAGTCCA
1 AAAAGGGTATTACCCTTAGTCCA
15945430 A
1 A
15945431 TTATGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (23 bp):
AAAAGGGTATTACCCTTAGTCCA
Found at i:15947542 original size:53 final size:53
Alignment explanation
Indices: 15947447--15947750 Score: 287
Period size: 53 Copynumber: 5.8 Consensus size: 53
15947437 ATGACGGGTC
* * * * * * *
15947447 CGCTCCCTCTTG-TTCATGGATTAAGGAGCTCAAACAATCTTCTAAAAATGAGTT
1 CGCTCCCTCTTGCTTCAGGGAGT-A-GAACTCGAACAATCTTCTACATACGAGTT
* * * * * * * *
15947501 TGCTCCCTATTGCTTCAGGGAGTAGAATTTGAATAATCTTCTGCTTACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACATACGAGTT
* * * *
15947554 TGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATATTCTACTTAC-AGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACATACGA-GTT
* * * *
15947607 CGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTACGAGTT
1 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACATACGAGTT
**
15947660 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCGAC-AG-T
1 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACATACGAGTT
* * *
15947711 C-ATCCCTCTTGCTTCA-GGAGTAAAACTCGAAAAATCTTCT
1 CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCT
15947751 GGTGTGATTC
Statistics
Matches: 210, Mismatches: 37, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
49 22 0.10
50 14 0.07
51 2 0.01
52 2 0.01
53 150 0.71
54 12 0.06
55 8 0.04
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (53 bp):
CGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACATACGAGTT
Found at i:15947629 original size:106 final size:104
Alignment explanation
Indices: 15947502--15947751 Score: 342
Period size: 106 Copynumber: 2.4 Consensus size: 104
15947492 AAATGAGTTT
* * * * * * * *
15947502 GCTCCCTATTGCTTCAGGGAGTAGAATTTGAATAATCTTCTGCTTACGGGTTTGCTCCCTCTTGT
1 GCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTACGAGTTCGCTCCCTCTTGC
**
15947567 TTCAGGGAGTAGAACTCGAACAATATTCTACTTACAGGTTC
66 TTCAGGGAGTAGAACTCGAACAATATTCTACCGACA-G-TC
15947608 GCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTACGAGTTCGCTCCCTCTTGC
1 GCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTACGAGTTCGCTCCCTCTTGC
*
15947673 TTCAGGGAGTAGAACTCGAACAATCTTCTACCGACAGTC
66 TTCAGGGAGTAGAACTCGAACAATATTCTACCGACAGTC
* * *
15947712 -ATCCCTCTTGCTTC-AGGAGTAAAACTCGAAAAATCTTCTG
1 GCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTG
15947752 GTGTGATTCT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
102 24 0.18
103 13 0.10
104 2 0.02
105 1 0.01
106 90 0.69
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (104 bp):
GCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTACGAGTTCGCTCCCTCTTGC
TTCAGGGAGTAGAACTCGAACAATATTCTACCGACAGTC
Found at i:15947747 original size:49 final size:52
Alignment explanation
Indices: 15947497--15947750 Score: 289
Period size: 53 Copynumber: 4.9 Consensus size: 52
15947487 TCTAAAAATG
* * * * * * *
15947497 AGTTTGCTCCCTATTGCTTCAGGGAGTAGAATTTGAATAATCTTCTGCTTAC
1 AGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTAC
* * * * *
15947549 GGGTTTGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATATTCTACTTAC
1 -AGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTAC
* * *
15947602 AGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAATAATCTTCTGCCTAC
1 A-GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTAC
*
15947655 GAGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCGAC
1 -AGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTAC
* * *
15947708 AG-TC-ATCCCTCTTGCTTCA-GGAGTAAAACTCGAAAAATCTTCT
1 AGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCT
15947751 GGTGTGATTC
Statistics
Matches: 176, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
49 22 0.12
50 14 0.08
51 2 0.01
52 2 0.01
53 135 0.77
54 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (52 bp):
AGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTAC
Found at i:15948191 original size:42 final size:42
Alignment explanation
Indices: 15948145--15948751 Score: 184
Period size: 42 Copynumber: 14.5 Consensus size: 42
15948135 CAGAAGACTT
*
15948145 ATCATC-TCGCTCGAAAGATTTACAAATGACCCGAAGGATTTC
1 ATCATCAT-GCTCGAAAGACTTACAAATGACCCGAAGGATTTC
* ** * *
15948187 ATCATCATGCTTGAAAGACTTACTGATGGCTCGAAGGATTTC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
*
15948229 ATCATCATG-TCCGAAAGACTTAC---TGA--TG--GG-TTTGC
1 ATCATCATGCT-CGAAAGACTTACAAATGACCCGAAGGATTT-C
* * * * * * *
15948264 TTCA-CTACT-CTTCCGTGAAGGCTTACAAATTACCCTAAGAATTTA
1 ATCATC-A-TGC-T-CG-AAAGACTTACAAATGACCCGAAGGATTTC
* ** * *
15948309 ATCATCATGCTCTAAAGACTTACTGATGACCCTAAGGATTTA
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
* *** * *
15948351 AGCATCATGCTCGAAAGACTTATTGATGGCCCGAAGGACTTC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
* * *
15948393 ATCATCATGCTCGAAAGACTTAC---TGA--TGGAGTTG-CTTC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAG--GATTTC
* * * * *
15948431 A-CTACTCTTTAG-T-G-AAGGCTTACAAATTACCCGAGGGATTTA
1 ATC-A-TC-AT-GCTCGAAAGACTTACAAATGACCCGAAGGATTTC
** *
15948473 ATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
* ** * * *
15948515 ATCATCATGCTCGAAATACTTACTGATGGCACTTACTGATGGAGTTAC
1 ATCATCATGCTCGAAAGACTTACAAAT-G-AC---CCGAAGGA-TTTC
* * * * *
15948563 TTCA-CTACT-CTTCGGTGAAGGCTTACAAATTACCCGAAGGATTTA
1 ATCATC-A-TGC-TC-G-AAAGACTTACAAATGACCCGAAGGATTTC
15948608 ATCATCATGCTCGAAAGACTTAC---TGA--CG--GG-TTTGC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTT-C
* * * * * * * *
15948643 TTCATTACT-CTTCGGTGAAGGCTTGCAAATTA-TCGAAGGATTTA
1 ATCATCA-TGC-TC-G-AAAGACTTACAAATGACCCGAAGGATTTC
** *
15948687 ATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTC
1 ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
15948729 ATCATCATGCTCGAAAGACTTAC
1 ATCATCATGCTCGAAAGACTTAC
15948752 TGATGGCACT
Statistics
Matches: 412, Mismatches: 92, Indels: 122
0.66 0.15 0.19
Matches are distributed among these distances:
34 7 0.02
35 15 0.04
36 4 0.01
37 12 0.03
38 29 0.07
39 11 0.03
40 4 0.01
41 21 0.05
42 228 0.55
43 10 0.02
44 14 0.03
45 16 0.04
46 11 0.03
47 7 0.02
48 8 0.02
49 5 0.01
50 1 0.00
51 9 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (42 bp):
ATCATCATGCTCGAAAGACTTACAAATGACCCGAAGGATTTC
Found at i:15948380 original size:164 final size:164
Alignment explanation
Indices: 15948145--15948544 Score: 590
Period size: 164 Copynumber: 2.4 Consensus size: 164
15948135 CAGAAGACTT
* ** *
15948145 ATCATC-TCGCTCGAAAGATTTACAAATGACCCGAAGGATTTCATCATCATGCTTGAAAGACTTA
1 ATCATCAT-GCTCGAAAGACTTACTGATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTA
* *
15948209 CTGATGGCTCGAAGGATTTCATCATCATG-TCCGAAAGACTTACTGATGG-GTTTGCTTCACTAC
65 CTGATGGCCCGAAGGACTTCATCATCATGCT-CGAAAGACTTACTGATGGAG-TTGCTTCACTAC
* *
15948272 TCTTCCGTGAAGGCTTACAAATTACCCTAAGAATTTA
128 TCTTCAGTGAAGGCTTACAAATTACCCGAAGAATTTA
* * * * *
15948309 ATCATCATGCTCTAAAGACTTACTGATGACCCTAAGGATTTAAGCATCATGCTCGAAAGACTTAT
1 ATCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTAC
15948374 TGATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCT
66 TGATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCT
* * *
15948439 TTAGTGAAGGCTTACAAATTACCCGAGGGATTTA
131 TCAGTGAAGGCTTACAAATTACCCGAAGAATTTA
* *
15948473 ATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGATTTCATCATCATGCTCGAAATACTTAC
1 ATCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTAC
15948538 TGATGGC
66 TGATGGC
15948545 ACTTACTGAT
Statistics
Matches: 210, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
164 207 0.99
165 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (164 bp):
ATCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTAC
TGATGGCCCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCT
TCAGTGAAGGCTTACAAATTACCCGAAGAATTTA
Found at i:15948412 original size:22 final size:21
Alignment explanation
Indices: 15948353--15948414 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
15948343 AGGATTTAAG
15948353 CATCATGCTCGAAAGACTTAT
1 CATCATGCTCGAAAGACTTAT
* * *
15948374 --TGATGGCCCGAAGGACTTCAT
1 CATCAT-GCTCGAAAGACTT-AT
15948395 CATCATGCTCGAAAGACTTA
1 CATCATGCTCGAAAGACTTA
15948415 CTGATGGAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
19 3 0.10
20 11 0.35
21 3 0.10
22 11 0.35
23 3 0.10
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (21 bp):
CATCATGCTCGAAAGACTTAT
Found at i:15948488 original size:80 final size:79
Alignment explanation
Indices: 15948218--15948501 Score: 238
Period size: 80 Copynumber: 3.5 Consensus size: 79
15948208 ACTGATGGCT
* *
15948218 CGAAGGATTTCATCATCATG-TCCGAAAGACTTACTGATGG-GTTTGCTTCACTACTCTTCCGTG
1 CGAAGGATTTAATCATCATGCT-CGAAAGACTTACTGATGGAG-TTGCTTCACTACTCTT-TGTG
15948281 AAGGCTTACAAATTACC
63 AAGGCTTACAAATTACC
* * * * * * * *
15948298 CTAAGAATTTAATCATCATGCTCTAAAGACTTACTGAT-GACCCTAAGGATTTA--AGCATC-AT
1 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGA--GT--TGCTTCACTA-C-TCTTT
* *** **
15948359 GCTCGAAAGACTTATTGATGGCC
60 G-T-G-AAGGCTTACAAATTACC
* *
15948382 CGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCTTTAGTGAA
1 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCTTT-GTGAA
15948447 GGCTTACAAATTACC
65 GGCTTACAAATTACC
*
15948462 CGAGGGATTTAATCATCATGCTCGAAAGACTTACTGATGG
1 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGG
15948502 CCCGAAGGAT
Statistics
Matches: 153, Mismatches: 35, Indels: 32
0.70 0.16 0.15
Matches are distributed among these distances:
79 1 0.01
80 80 0.52
81 11 0.07
82 5 0.03
83 10 0.07
84 44 0.29
85 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (79 bp):
CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCTTTGTGAAG
GCTTACAAATTACC
Found at i:15948550 original size:13 final size:13
Alignment explanation
Indices: 15948532--15948556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15948522 TGCTCGAAAT
15948532 ACTTACTGATGGC
1 ACTTACTGATGGC
15948545 ACTTACTGATGG
1 ACTTACTGATGG
15948557 AGTTACTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
ACTTACTGATGGC
Found at i:15948752 original size:214 final size:215
Alignment explanation
Indices: 15948380--15948847 Score: 805
Period size: 214 Copynumber: 2.2 Consensus size: 215
15948370 TTATTGATGG
* * * *
15948380 CCCGAAGGACTTCATCATCATGCTCGAAAGACTTACTGATGGAGTTGCTTCACTACTCTTTAGTG
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGACGGAGTTGCTTCACTACTCTTCAGTG
*
15948445 AAGGCTTACAAATTACCCGAGGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
66 AAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
*
15948510 ATTTCATCATCATGCTCGAAATACTTACTGATGGCACTTACTGATGGAGTTACTTCACTACTCTT
131 ATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGAGTTACTTCACTACTCTT
15948575 CGGTGAAGGCTTACAAATTA
196 CGGTGAAGGCTTACAAATTA
* *
15948595 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGACGG-GTTTGCTTCATTACTCTTCGGT
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGACGGAG-TTGCTTCACTACTCTTCAGT
* *
15948659 GAAGGCTTGCAAATTA-TCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
65 GAAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* *
15948723 GATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGGGTTGCTTCACTACTCT
130 GATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGAGTTACTTCACTACTCT
15948788 TCGGTGAAGGCTTACAAATTA
195 TCGGTGAAGGCTTACAAATTA
15948809 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGA
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGA
15948848 TGATCCGAAG
Statistics
Matches: 240, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
214 169 0.70
215 71 0.30
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (215 bp):
CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGACGGAGTTGCTTCACTACTCTTCAGTG
AAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
ATTTCATCATCATGCTCGAAAGACTTACTGATGGCACTTACTGATGGAGTTACTTCACTACTCTT
CGGTGAAGGCTTACAAATTA
Found at i:15948764 original size:13 final size:13
Alignment explanation
Indices: 15948746--15948770 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15948736 TGCTCGAAAG
15948746 ACTTACTGATGGC
1 ACTTACTGATGGC
15948759 ACTTACTGATGG
1 ACTTACTGATGG
15948771 GGTTGCTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
ACTTACTGATGGC
Found at i:15955477 original size:10 final size:11
Alignment explanation
Indices: 15955462--15955486 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15955452 AAATAGACAT
15955462 AAAAAAAGAAA
1 AAAAAAAGAAA
15955473 AAAAAAAGAAA
1 AAAAAAAGAAA
15955484 AAA
1 AAA
15955487 TGGGTTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:15957143 original size:22 final size:22
Alignment explanation
Indices: 15957115--15957160 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
15957105 ATTTTAAATT
15957115 AAAAGGGTATTACCCTTAGTCC
1 AAAAGGGTATTACCCTTAGTCC
15957137 AAAAGGGTATTACCCTTAGTCC
1 AAAAGGGTATTACCCTTAGTCC
15957159 AA
1 AA
15957161 TTATGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (22 bp):
AAAAGGGTATTACCCTTAGTCC
Found at i:15960100 original size:151 final size:151
Alignment explanation
Indices: 15959822--15960126 Score: 520
Period size: 151 Copynumber: 2.0 Consensus size: 151
15959812 TTGAAACTTA
* *
15959822 TAGTTGATTTATTGGAGGTCCCATCTAGCGGGATCGAGTCCCACTGAGGGCAATTCATAACGGAG
1 TAGTTGATTTATTAGAGGTCACATCTAGCGGGATCGAGTCCCACTGAGGGCAATTCATAACGGAG
* * * * *
15959887 GTCTTTCACGGAAATTGTTCTCAACTGGTATTGGGGGCAGCCTATTACCCTACCTCCCCTTACCC
66 GTATTCCACAGAAATTATTCTCAACTGGTATTGGGGACAGCCTATTACCCTACCTCCCCTTACCC
*
15959952 CATTACATATGGGAATAGGGT
131 CATTACATAAGGGAATAGGGT
15959973 TAGTTGATTTATTAGAGGTCACATCTAGCGGGATCGAGTCCCACTGAGGGCAATTCATAACGGAG
1 TAGTTGATTTATTAGAGGTCACATCTAGCGGGATCGAGTCCCACTGAGGGCAATTCATAACGGAG
* *
15960038 GTATTCCACAGAAATTATTCTCAACTGGTGTTGGGGACAGCCTATTACCCTACCTCCTCTTACCC
66 GTATTCCACAGAAATTATTCTCAACTGGTATTGGGGACAGCCTATTACCCTACCTCCCCTTACCC
15960103 CATTACATAAGGGAATAGGGT
131 CATTACATAAGGGAATAGGGT
15960124 TAG
1 TAG
15960127 CTAATTTTTT
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 144 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (151 bp):
TAGTTGATTTATTAGAGGTCACATCTAGCGGGATCGAGTCCCACTGAGGGCAATTCATAACGGAG
GTATTCCACAGAAATTATTCTCAACTGGTATTGGGGACAGCCTATTACCCTACCTCCCCTTACCC
CATTACATAAGGGAATAGGGT
Found at i:15965392 original size:286 final size:286
Alignment explanation
Indices: 15964880--15965452 Score: 1002
Period size: 286 Copynumber: 2.0 Consensus size: 286
15964870 TTTCCTTGTT
15964880 AGAATTAATTCTAACGAACAAAGTATGGTCCGCTTGACACTGCTTGTACCCATTCTCTATAAGGA
1 AGAATTAATTCTAACGAACAAAGTATGGTCCGCTTGACACTGCTTGTACCCATTCTCTATAAGGA
*
15964945 CCTTGGTAAACCTATCAAACCAGGCCCTAAGAGACTATTTTAAACCATACAAGGTTTTTTCAAGT
66 CCTTGGTAAACCTATCAAACCAGGCCCTAAGAGACTATTTTAAACCATACAAAGTTTTTTCAAGT
* * *
15965010 TTACAAACCTTATGACCTGCTAGTTTAGACTTCATTCCAGGTGACATCTTCATGTAGATTTCTTC
131 TTACAAACCTTATGACCTCCTAGTTCAGACTTCATTCCAGGTGACATCTTCATGTAGACTTCTTC
* * *
15965075 TTGTAACTTTCCGTTCAAAAAAAGCATTCTTTATGTCAAGTTGGTGGAGACTCCAATCTCTGTTC
196 TTGTAACTTGCCATTCAAAAAAAGCATTCTTTATGTCAAGTTGGCGGAGACTCCAATCTCTGTTC
15965140 ACCGCAAGACTAAAGAGCACTCTAAC
261 ACCGCAAGACTAAAGAGCACTCTAAC
* *
15965166 AGAATTAATTTTAATGAACAAAGTATGGTCCGCTTGACACTGCTTGTACCCATTCTCTATAAGGA
1 AGAATTAATTCTAACGAACAAAGTATGGTCCGCTTGACACTGCTTGTACCCATTCTCTATAAGGA
* * * *
15965231 CCTTGGTAAACCTGTCAAACCGGGCCTTAAGAGACTGTTTTAAACCATACAAAGTTTTTTCAAGT
66 CCTTGGTAAACCTATCAAACCAGGCCCTAAGAGACTATTTTAAACCATACAAAGTTTTTTCAAGT
15965296 TTACAAACCTTATGACCTCCTAGTTCAGACTTCATTCCAGGTGACATCTTCATGTAGACTTCTTC
131 TTACAAACCTTATGACCTCCTAGTTCAGACTTCATTCCAGGTGACATCTTCATGTAGACTTCTTC
*
15965361 TTGTAACTTGCCATTCAAAAAAAGCATTCTTTATGTCAAGTTGGCGGAGACTCCAATCTTTGTTC
196 TTGTAACTTGCCATTCAAAAAAAGCATTCTTTATGTCAAGTTGGCGGAGACTCCAATCTCTGTTC
* *
15965426 ACCTCAAGACTCAAGAGCACTCTAAC
261 ACCGCAAGACTAAAGAGCACTCTAAC
15965452 A
1 A
15965453 ATATTTAGGT
Statistics
Matches: 271, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
286 271 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (286 bp):
AGAATTAATTCTAACGAACAAAGTATGGTCCGCTTGACACTGCTTGTACCCATTCTCTATAAGGA
CCTTGGTAAACCTATCAAACCAGGCCCTAAGAGACTATTTTAAACCATACAAAGTTTTTTCAAGT
TTACAAACCTTATGACCTCCTAGTTCAGACTTCATTCCAGGTGACATCTTCATGTAGACTTCTTC
TTGTAACTTGCCATTCAAAAAAAGCATTCTTTATGTCAAGTTGGCGGAGACTCCAATCTCTGTTC
ACCGCAAGACTAAAGAGCACTCTAAC
Found at i:15965943 original size:69 final size:66
Alignment explanation
Indices: 15965831--15965972 Score: 212
Period size: 69 Copynumber: 2.1 Consensus size: 66
15965821 TTGCAATAGG
* * * *
15965831 TAAATCTTCCATATCATAAACCAAGAGAAGTTTCCTTATCACCATCATCTTCTAAGGCAGTTGGA
1 TAAATCTTCCACATCAAAAACCAAGAGAAGTTTCCTTACCACCATCATCTTCCAAGGCAGTTGGA
15965896 CT
66 -T
15965898 TAAATCTTCCACATTCGAAAAACCAAGAGAAGTTTCCTTACCACCATCATCTTCCAAGGCAGTTG
1 TAAATCTTCCACA-TC-AAAAACCAAGAGAAGTTTCCTTACCACCATCATCTTCCAAGGCAGTTG
15965963 GAT
64 GAT
15965966 TCAAATC
1 T-AAATC
15965973 CAACTCTTGG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
67 12 0.18
68 4 0.06
69 52 0.76
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (66 bp):
TAAATCTTCCACATCAAAAACCAAGAGAAGTTTCCTTACCACCATCATCTTCCAAGGCAGTTGGA
T
Found at i:15974533 original size:11 final size:11
Alignment explanation
Indices: 15974509--15974542 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15974499 TCTAATTTTA
15974509 TAATTTAATAT
1 TAATTTAATAT
15974520 TAATTCTAAT-T
1 TAATT-TAATAT
15974531 TAATTTAATAT
1 TAATTTAATAT
15974542 T
1 T
15974543 TTTTCCGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 4 0.19
11 13 0.62
12 4 0.19
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (11 bp):
TAATTTAATAT
Found at i:15978238 original size:13 final size:13
Alignment explanation
Indices: 15978220--15978259 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15978210 GAACTTTATA
15978220 TAATATCATTGAT
1 TAATATCATTGAT
15978233 TAATAT--TTGAT
1 TAATATCATTGAT
15978244 TAAGT-TCATTGAT
1 TAA-TATCATTGAT
15978257 TAA
1 TAA
15978260 GTTCTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.38
12 1 0.04
13 14 0.58
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (13 bp):
TAATATCATTGAT
Found at i:15978260 original size:13 final size:13
Alignment explanation
Indices: 15978239--15978263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15978229 TGATTAATAT
15978239 TTGATTAAGTTCA
1 TTGATTAAGTTCA
15978252 TTGATTAAGTTC
1 TTGATTAAGTTC
15978264 TTTATTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTAAGTTCA
Found at i:15979104 original size:32 final size:32
Alignment explanation
Indices: 15979068--15979167 Score: 98
Period size: 31 Copynumber: 3.2 Consensus size: 32
15979058 GGAATGCCTT
* *
15979068 GGGGCC-CGATAGCCTACCCAAGAAAGTTACTC
1 GGGGCCACGAAAGCCTACCCAAGAAAGAT-CTC
* *
15979100 GGGGCCAC-AAATCCTACTCAAGAAAGATCTC
1 GGGGCCACGAAAGCCTACCCAAGAAAGATCTC
* * * *
15979131 AGGGCCTCG-GAGCCTACCCAATAAAGATCTC
1 GGGGCCACGAAAGCCTACCCAAGAAAGATCTC
15979162 GGGGCC
1 GGGGCC
15979168 TCAGAGCTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
31 32 0.58
32 22 0.40
33 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.15
Consensus pattern (32 bp):
GGGGCCACGAAAGCCTACCCAAGAAAGATCTC
Found at i:15979147 original size:31 final size:30
Alignment explanation
Indices: 15979078--15979182 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 30
15979068 GGGGCCCGAT
* * * *
15979078 AGCCTACCCAAGAAAGTTACTCGGGGCCACAA
1 AGCCTA-CCAAGAAAGAT-CTCAGGGCCTCAG
* *
15979110 ATCCTACTCAAGAAAGATCTCAGGGCCTCGG
1 AGCCTAC-CAAGAAAGATCTCAGGGCCTCAG
* *
15979141 AGCCTACCCAATAAAGATCTCGGGGCCTCAG
1 AGCCTA-CCAAGAAAGATCTCAGGGCCTCAG
*
15979172 AGCTTACCAAG
1 AGCCTACCAAG
15979183 GGTCGCCTTA
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
30 4 0.07
31 40 0.68
32 15 0.25
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.16
Consensus pattern (30 bp):
AGCCTACCAAGAAAGATCTCAGGGCCTCAG
Found at i:15985123 original size:64 final size:63
Alignment explanation
Indices: 15984978--15985137 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 63
15984968 AATTATTCAG
* ** *
15984978 TGTGTATCGATATATAGGAAATGTATCGATACACCCCTCAAAAATGAAAACATTGAATGTAATT
1 TGTGTATCGATACATA-GTTATGTATCGATACACCCCTCAAAAATGAAAACATCGAATGTAATT
* *** *
15985042 TGTGTATCGATACATAGTTAGTGTATCGATACACTCCTTGTAAA-GAAAAACATCGAATGTCATT
1 TGTGTATCGATACATAGTTA-TGTATCGATACACCCCTCAAAAATG-AAAACATCGAATGTAATT
15985106 TGTGTATCGATACATAGTTA-GTATCGATACAC
1 TGTGTATCGATACATAGTTATGTATCGATACAC
15985138 AAGTTAAGGA
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
62 12 0.14
63 3 0.04
64 70 0.82
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (63 bp):
TGTGTATCGATACATAGTTATGTATCGATACACCCCTCAAAAATGAAAACATCGAATGTAATT
Found at i:15985760 original size:22 final size:22
Alignment explanation
Indices: 15985732--15985804 Score: 101
Period size: 22 Copynumber: 3.3 Consensus size: 22
15985722 AGTCGAGGGT
*
15985732 TTCATAGGTTCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACATA
15985754 TTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACATA
* * *
15985776 ATCATAGGTCCTTTGGGACAAA
1 TTCATAGGTCCTTCGGGACATA
15985798 TCTCATA
1 T-TCATA
15985805 TGTCACTCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 40 0.89
23 5 0.11
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (22 bp):
TTCATAGGTCCTTCGGGACATA
Found at i:15987364 original size:19 final size:19
Alignment explanation
Indices: 15987340--15987393 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
15987330 AAAAACCGAA
15987340 CCGAACCGAACCGAAAAAC
1 CCGAACCGAACCGAAAAAC
* *
15987359 CCGAACCGTTA---AAAAAT
1 CCGAACCG-AACCGAAAAAC
15987376 CCGAACCGAACCGAAAAA
1 CCGAACCGAACCGAAAAA
15987394 ACCGGTTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 13 0.46
19 13 0.46
20 1 0.04
ACGTcount: A:0.48, C:0.31, G:0.15, T:0.06
Consensus pattern (19 bp):
CCGAACCGAACCGAAAAAC
Found at i:15990360 original size:7 final size:7
Alignment explanation
Indices: 15990348--15990416 Score: 68
Period size: 7 Copynumber: 10.0 Consensus size: 7
15990338 AATTATATTA
15990348 AGGGTTT
1 AGGGTTT
15990355 AGGGTTT
1 AGGGTTT
15990362 AGGGTTT
1 AGGGTTT
***
15990369 A-TAATT
1 AGGGTTT
15990375 AGGGTTT
1 AGGGTTT
*
15990382 AAGGTTT
1 AGGGTTT
15990389 AGGGTTT
1 AGGGTTT
*
15990396 AGGGCTT
1 AGGGTTT
**
15990403 ATAGTTT
1 AGGGTTT
15990410 AGGGTTT
1 AGGGTTT
15990417 GGAATTTATA
Statistics
Matches: 47, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
6 3 0.06
7 44 0.94
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.43
Consensus pattern (7 bp):
AGGGTTT
Found at i:15990378 original size:27 final size:27
Alignment explanation
Indices: 15990340--15990396 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
15990330 TATCATATAA
*
15990340 TTATATTAAGGGTTTAGGGTTTAGGGT
1 TTATATTAAGGGTTTAAGGTTTAGGGT
15990367 TTATAATT-AGGGTTTAAGGTTTAGGGT
1 TTAT-ATTAAGGGTTTAAGGTTTAGGGT
15990394 TTA
1 TTA
15990397 GGGCTTATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (27 bp):
TTATATTAAGGGTTTAAGGTTTAGGGT
Found at i:15990391 original size:34 final size:36
Alignment explanation
Indices: 15990345--15990416 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 36
15990335 TATAATTATA
*
15990345 TTAAGGGTTTAGGGTTTAGGGTTTATA-ATTAGGGT
1 TTAAGGGTTTAGGGTTTAGGGCTTATAGATTAGGGT
*
15990380 TTAA-GGTTTAGGGTTTAGGGCTTATAGTTTAGGGT
1 TTAAGGGTTTAGGGTTTAGGGCTTATAGATTAGGGT
15990415 TT
1 TT
15990417 GGAATTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 21 0.62
35 13 0.38
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.44
Consensus pattern (36 bp):
TTAAGGGTTTAGGGTTTAGGGCTTATAGATTAGGGT
Found at i:15992629 original size:19 final size:18
Alignment explanation
Indices: 15992605--15992650 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
15992595 CATATGTAAT
*
15992605 TATTTATTTATTTAATTAA
1 TATTTATTTATTT-ATAAA
15992624 TATTTATTTATTTATAAA
1 TATTTATTTATTTATAAA
*
15992642 TTTTTATTT
1 TATTTATTT
15992651 GAAGGGATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTTATTTATTTATAAA
Found at i:15999197 original size:20 final size:20
Alignment explanation
Indices: 15999172--15999220 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
15999162 TACCTTTGGT
15999172 ATCGATACTACAAGAACAAC
1 ATCGATACTACAAGAACAAC
* * *
15999192 ATCGATATTATAAGAACAAT
1 ATCGATACTACAAGAACAAC
15999212 ATCGATACT
1 ATCGATACT
15999221 TCTTTTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.24
Consensus pattern (20 bp):
ATCGATACTACAAGAACAAC
Found at i:16000483 original size:20 final size:20
Alignment explanation
Indices: 16000447--16000484 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16000437 TTCAAAATCA
*
16000447 TTTTTCAAATTTCATTTTGT
1 TTTTTCAAATCTCATTTTGT
16000467 TTTTTCAAAATCT-ATTTT
1 TTTTTC-AAATCTCATTTT
16000485 TACTTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.24, C:0.11, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTTCAAATCTCATTTTGT
Found at i:16006523 original size:15 final size:14
Alignment explanation
Indices: 16006475--16006526 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
16006465 TATGTAATTG
16006475 TATTTTATGATATTT
1 TATTTTATGATA-TT
* *
16006490 TAATTTATGGTATT
1 TATTTTATGATATT
*
16006504 ATATTTTATGTTATGT
1 -TATTTTATGATAT-T
16006520 TATTTTA
1 TATTTTA
16006527 ATTATGTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.06
15 28 0.90
16 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (14 bp):
TATTTTATGATATT
Found at i:16006523 original size:20 final size:20
Alignment explanation
Indices: 16006469--16006523 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
16006459 CATAATTATG
* *
16006469 TAATTGTATTTTATGATATTT
1 TAATT-TATGTTATTATATTT
*
16006490 TAATTTATGGTATTATATTT
1 TAATTTATGTTATTATATTT
16006510 T-ATGTTATGTTATT
1 TAAT-TTATGTTATT
16006524 TTAATTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.76
21 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (20 bp):
TAATTTATGTTATTATATTT
Found at i:16006921 original size:20 final size:20
Alignment explanation
Indices: 16006893--16006938 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
16006883 CATCGCTTAA
*
16006893 AATATCTTGTATGTGTCGAT
1 AATACCTTGTATGTGTCGAT
16006913 AATACCTTGTATGTGTCGAT
1 AATACCTTGTATGTGTCGAT
16006933 AATACC
1 AATACC
16006939 CTCAATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (20 bp):
AATACCTTGTATGTGTCGAT
Found at i:16012097 original size:27 final size:27
Alignment explanation
Indices: 16012062--16012128 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
16012052 TGATAGATTG
* *
16012062 ATATGTGTCACGTCACCGCTTTAGATA
1 ATATGTGTCACATCACCACTTTAGATA
*
16012089 ATATGTGTCACATCATCACTTTAGATA
1 ATATGTGTCACATCACCACTTTAGATA
* *
16012116 ATATATATCACAT
1 ATATGTGTCACAT
16012129 TATTATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (27 bp):
ATATGTGTCACATCACCACTTTAGATA
Found at i:16012671 original size:326 final size:325
Alignment explanation
Indices: 16012078--16012729 Score: 1270
Period size: 326 Copynumber: 2.0 Consensus size: 325
16012068 GTCACGTCAC
16012078 CGCTTTAGATAATATGTGTCACATCATCACTTTAGATAATATATATCACATTATTATTTTTGGGC
1 CGCTTTAGATAATATGTGT-ACATCATCACTTTAGATAATATATATCACATTATTATTTTTGGGC
16012143 ATGTGACAATGTCATGTCATCGCTTTAGACGTTGATACCTGACTTGAATTAATTGTTAGTAAACT
65 ATGTGACAATGTCATGTCATCGCTTTAGACGTTGATACCTGACTTGAATTAATTGTTAGTAAACT
16012208 AACAATTTTCATCGTTTAAGGTAGAGAAAACATTTTTTCCTGATATTTAAACCGGGGATAGCTTT
130 AACAATTTTCATCGTTTAAGGTAGAGAAAACATTTTTTCCTGATATTTAAACCGGGGATAGCTTT
16012273 CGCTTTATTAGCAAAAAAATATATTAAAGATATTTGGGATATTTGAAATCTGGTTCCAATTTCCG
195 CGCTTTATTAGCAAAAAAATATATTAAAGATATTTGGGATATTTGAAATCTGGTTCCAATTTCCG
16012338 CTTGGCCCGACTTGTTTTGGCCTTTCAGACGAAGGCTAATGCATCATCACATGGAGATCTTCAAG
260 CTTGGCCCGACTTGTTTTGGCCTTTCAGACGAAGGCTAATGCATCATCACATGGAGATCTTCAAG
16012403 A
325 A
16012404 CGCTTTAGATAATATGTGT-CATCATCACTTTAGATAATATATATCACATTATTATTTTTGGGCA
1 CGCTTTAGATAATATGTGTACATCATCACTTTAGATAATATATATCACATTATTATTTTTGGGCA
16012468 TGTGACAATGTCATGTCATCGCTTTAGACGTTGATACCTGACTTGAATTAATTGTTAGTAAACTA
66 TGTGACAATGTCATGTCATCGCTTTAGACGTTGATACCTGACTTGAATTAATTGTTAGTAAACTA
16012533 ACAATTTTCATCGTTTAAGGTAGAGAAAAACATTTTTTTCCTGATATTTAAACCGGGGATAGCTT
131 ACAATTTTCATCGTTTAAGGTAGAG-AAAACA-TTTTTTCCTGATATTTAAACCGGGGATAGCTT
16012598 TCGCTTTATTAGCAAAAAAATATATTAAAGATATTTGGGATATTTGAAATCTGGTTCCAATTTCC
194 TCGCTTTATTAGCAAAAAAATATATTAAAGATATTTGGGATATTTGAAATCTGGTTCCAATTTCC
16012663 GCTTGGCCCGACTTGTTTTGGCCTTTCAGACGAAGGCTAATGCATCATCACATGGAGATCTTCAA
259 GCTTGGCCCGACTTGTTTTGGCCTTTCAGACGAAGGCTAATGCATCATCACATGGAGATCTTCAA
16012728 GA
324 GA
16012730 AGGCTGATGT
Statistics
Matches: 324, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
324 135 0.42
325 6 0.02
326 183 0.56
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (325 bp):
CGCTTTAGATAATATGTGTACATCATCACTTTAGATAATATATATCACATTATTATTTTTGGGCA
TGTGACAATGTCATGTCATCGCTTTAGACGTTGATACCTGACTTGAATTAATTGTTAGTAAACTA
ACAATTTTCATCGTTTAAGGTAGAGAAAACATTTTTTCCTGATATTTAAACCGGGGATAGCTTTC
GCTTTATTAGCAAAAAAATATATTAAAGATATTTGGGATATTTGAAATCTGGTTCCAATTTCCGC
TTGGCCCGACTTGTTTTGGCCTTTCAGACGAAGGCTAATGCATCATCACATGGAGATCTTCAAGA
Found at i:16018863 original size:21 final size:21
Alignment explanation
Indices: 16018832--16018989 Score: 196
Period size: 21 Copynumber: 7.6 Consensus size: 21
16018822 GTTTCCAGAT
* *
16018832 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
*
16018853 TCGCATTGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
16018874 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* * *
16018895 TCGCAATGTGAA-TATGTA-AA
1 TCGCAATGCGAACT-TGGACTA
*
16018915 TCGCAATGCGATAGTT-GACTA
1 TCGCAATGCGA-ACTTGGACTA
*
16018936 TCGTAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
16018957 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
16018978 TCGCAATGCGAA
1 TCGCAATGCGAA
16018990 TATGTAAATC
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
20 16 0.14
21 101 0.86
22 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:16018935 original size:83 final size:83
Alignment explanation
Indices: 16018848--16019009 Score: 288
Period size: 83 Copynumber: 2.0 Consensus size: 83
16018838 CGCGAACTTC
* * *
16018848 GACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGTGAATATGTA
1 GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA
16018913 AATCGCAATGCGATAGTT
66 AATCGCAATGCGATAGTT
*
16018931 GACTATCGTAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA
1 GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA
16018996 AATCGCAATGCGAT
66 AATCGCAATGCGAT
16019010 GGTCCAAGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 75 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (83 bp):
GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA
AATCGCAATGCGATAGTT
Found at i:16019006 original size:62 final size:63
Alignment explanation
Indices: 16018832--16019008 Score: 197
Period size: 62 Copynumber: 2.8 Consensus size: 63
16018822 GTTTCCAGAT
* * *
16018832 TCGCAACGCGAACTTCGACTATCGCATTGCGAACT-TGGACTATCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAA-TATGTACTATCGCAATGCGAACTTGGACTA
* * *
16018895 TCGCAATGTGAA-TAT-GTA-AATCGCAATGCG-ATA-GTTGACTATCGTAATGCGAACTTGGAC
1 TCGCAATGCGAACT-TCG-ACTATCGCAATGCGAATATG-T-ACTATCGCAATGCGAACTTGGAC
16018955 TA
62 TA
*
16018957 TCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA-AATCGCAATGCGA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTACTATCGCAATGCGA
16019009 TGGTCCAAGT
Statistics
Matches: 94, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
60 2 0.02
61 1 0.01
62 60 0.64
63 26 0.28
64 4 0.04
65 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (63 bp):
TCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTACTATCGCAATGCGAACTTGGACTA
Found at i:16019029 original size:83 final size:83
Alignment explanation
Indices: 16018849--16019029 Score: 274
Period size: 83 Copynumber: 2.2 Consensus size: 83
16018839 GCGAACTTCG
* *
16018849 ACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGTGAATATGTAA
1 ACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
**
16018914 ATCGCAATGCGATAGTTG
66 ATCGCAATGCGATAGTCA
* *
16018932 ACTATCGTAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
1 ACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
*
16018997 ATCGCAATGCGATGGTCCA
66 ATCGCAATGCGATAGT-CA
*
16019016 AGT-TCGCATTGCGA
1 ACTATCGCATTGCGA
16019030 TAATCGACTA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
83 85 0.98
84 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (83 bp):
ACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
ATCGCAATGCGATAGTCA
Found at i:16019039 original size:83 final size:83
Alignment explanation
Indices: 16018849--16019050 Score: 246
Period size: 83 Copynumber: 2.4 Consensus size: 83
16018839 GCGAACTTCG
* * * * *
16018849 ACTATCGCATTGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGTGAATATGTAA
1 ACTATCGCAATGCGAACATCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
**
16018914 ATCGCAATGCGATAGTTG
66 ATCGCAATGCGATAGTCA
* * *
16018932 ACTATCGTAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
1 ACTATCGCAATGCGAACATCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
*
16018997 ATCGCAATGCGATGGTCCA
66 ATCGCAATGCGATAGT-CA
* * *
16019016 AGT-TCGCATTGCGATA-ATCGACTATCGCATTGCGA
1 ACTATCGCAATGCGA-ACATCGACTATCGCAATGCGA
16019051 TTTACATATT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
83 101 0.97
84 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (83 bp):
ACTATCGCAATGCGAACATCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
ATCGCAATGCGATAGTCA
Found at i:16019063 original size:41 final size:41
Alignment explanation
Indices: 16019018--16019095 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
16019008 ATGGTCCAAG
16019018 TTCGCATTGCGATAATCG-ACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAATCGAACTA-CGCATTGCGATTTACATA
* * *
16019059 TTCGCATTGCGATAGTCGAAGTACGCGTTGCGATTTA
1 TTCGCATTGCGATAATCGAACTACGCATTGCGATTTA
16019096 TTCCAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 30 0.91
42 3 0.09
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (41 bp):
TTCGCATTGCGATAATCGAACTACGCATTGCGATTTACATA
Found at i:16019797 original size:21 final size:21
Alignment explanation
Indices: 16019772--16019852 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
16019762 GAATTTGTAA
16019772 ATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGATAGTCGACT
* *
16019793 ATCGCAATGCGA-ACTTGGACT
1 ATCGCAATGCGATA-GTCGACT
*
16019814 ATCGCAATGCGAATA-T-GTA-A
1 ATCGCAATGCG-ATAGTCG-ACT
16019834 ATCGCAATGCGATAGTCGA
1 ATCGCAATGCGATAGTCGA
16019853 AGTTCGCGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
19 3 0.06
20 15 0.29
21 31 0.61
22 1 0.02
23 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (21 bp):
ATCGCAATGCGATAGTCGACT
Found at i:16021074 original size:2 final size:2
Alignment explanation
Indices: 16021069--16021106 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
16021059 ATAAAAAATG
*
16021069 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16021107 TATGAAAGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:16023025 original size:106 final size:106
Alignment explanation
Indices: 16022884--16023273 Score: 665
Period size: 106 Copynumber: 3.7 Consensus size: 106
16022874 GTACTGTTCC
* * *
16022884 GAGTCCAATATAC-TCTGTCGTGAAGTTGAAGTTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
1 GAGTCCAATATCCTTC-GTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
*
16022948 ACCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
* * *
16022990 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
* *
16023055 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
*
16023096 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
16023161 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
*
16023202 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
16023267 CCAGCGG
66 CCAGCGG
16023274 CTCTAGTATT
Statistics
Matches: 266, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
106 264 0.99
107 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.33
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
Found at i:16023314 original size:143 final size:142
Alignment explanation
Indices: 16023147--16023415 Score: 459
Period size: 143 Copynumber: 1.9 Consensus size: 142
16023137 AATTGAGAAG
* *
16023147 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
* * *
16023212 TCCT-TCGTTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGGCT
66 TACTCT-GTCGTGAAGTTGAAATTGGCTCTGAAATT-AGAAGTTGTTTGTTGACAACCAGCGGCT
16023276 CTAGTATTAGAAAA
129 CTAGTATTAGAAAA
*
16023290 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
16023355 TACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTAGAAGTTGTTTGTTGACAACCAGCGG
66 TACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTAGAAGTTGTTTGTTGACAACCAGCGG
16023416 TCCCTTCGTC
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
142 26 0.22
143 92 0.77
144 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (142 bp):
TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
TACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTAGAAGTTGTTTGTTGACAACCAGCGGCTCT
AGTATTAGAAAA
Found at i:16023458 original size:354 final size:355
Alignment explanation
Indices: 16022935--16023624 Score: 1170
Period size: 354 Copynumber: 1.9 Consensus size: 355
16022925 AATTGAGAAG
* *
16022935 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
* * *
16023000 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGTGGTCC
66 TACTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCC
* *
16023065 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTG
131 CTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTG
*
16023130 GCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCG
196 GCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCG
* * *
16023195 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTG
261 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTG
16023260 TTGACAACCAGCGGCTCTAGTATTAGAAAA
326 TTGACAACCAGCGGCTCTAGTATTAGAAAA
* *
16023290 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
*
16023355 TAC-TCTG-TCGTGAAGTTGAAATTGGCTCTGAAATT-AGAAGTTGTTTGTTGACAACCAGCGGT
66 TACTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGT
16023417 CCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
129 CCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* * * *
16023482 TGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTTGTCGTGAAGTTGAACTTG
194 TGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATG
*
16023547 CGTTGTTTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATT
259 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATT
16023612 TGTTGACAACCAG
324 TGTTGACAACCAG
16023625 AGGTCCCTTC
Statistics
Matches: 314, Mismatches: 19, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
354 224 0.71
355 90 0.29
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (355 bp):
TTGTTTATTAACAACCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
TACTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCC
CTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTG
GCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCG
TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTG
TTGACAACCAGCGGCTCTAGTATTAGAAAA
Found at i:16023480 original size:248 final size:249
Alignment explanation
Indices: 16023041--16023521 Score: 858
Period size: 248 Copynumber: 1.9 Consensus size: 249
16023031 AATTGGGAAG
* *
16023041 TTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* *
16023106 TCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCC
66 TACTTCGTCGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCC
*
16023171 CTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTG
131 CTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTG
* *
16023236 GCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGGCTCTAGTATTAGAAAA
196 GCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGCTCTAGTATTAGAAAA
16023290 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
*
16023355 TAC-TCTGTCGTGAAGTTGAAATTGGCTCTGAAATT-AGAAGTTGTTTGTTGACAACCAGCGGTC
66 TACTTC-GTCGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTC
16023418 CCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
130 CCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
16023483 GGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGG
195 GGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGG
16023522 TCCCTTTGTC
Statistics
Matches: 222, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
248 130 0.59
249 92 0.41
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (249 bp):
TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
TACTTCGTCGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCC
CTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTG
GCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGCTCTAGTATTAGAAAA
Found at i:16023549 original size:106 final size:106
Alignment explanation
Indices: 16023290--16024021 Score: 1078
Period size: 106 Copynumber: 6.9 Consensus size: 106
16023280 TATTAGAAAA
*
16023290 TTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
*
16023355 TAC-TCTG-TCGTGAAGTTGAAATTGGCTCTGAAATT-AGAAG
66 TCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
* *
16023395 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
*
16023460 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
* *
16023501 TTGTTTATTGACAACCAGCGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTTTGGAGTCCAATA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* *
16023566 TCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAG
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
* * * * *
16023607 TTATTTGTTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACATGAGTTGTCTGGAGTCCAATA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* *
16023672 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAT
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
* * *
16023713 TTGTTTGTTGACAATCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* * *
16023778 TCCTTCGATGTGAAGTTGAAATTGACTCTGAAATTGGGAAG
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
* *
16023819 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCACTA
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* *
16023884 TCCTTCGCTGTGAAGTTGAAATTGGCTCT-AGTATTG-GAAAA
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-AATTGAG-AAG
* * * *
16023925 TTGTTTATTAACAGCCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATT
1 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* * * * *
16023990 TTCTTCACTGCGAAGTTGAAATAGACTCTGAA
66 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
16024022 TGAAATTGGA
Statistics
Matches: 568, Mismatches: 53, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
105 93 0.16
106 474 0.83
107 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG
Found at i:16023616 original size:460 final size:461
Alignment explanation
Indices: 16022884--16023733 Score: 1594
Period size: 460 Copynumber: 1.8 Consensus size: 461
16022874 GTACTGTTCC
*
16022884 GAGTCCAATATACTCTGTCGTGAAGTTGAAGTTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
16022949 CCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
*
16023014 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
16023079 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAG
196 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAG
* * *
16023144 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCA
261 AAGTTATTTGTTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACATGAGTTGTCTGGAGTCCA
*
16023209 ATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGG
326 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGG
16023274 CTCTAGTATTAGAAAATTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
391 CTCTAGTATTAGAAAATTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
16023339 TGTCTG
456 TGTCTG
16023345 GAGTCCAATATACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATT-AGAAGTTGTTTGTTGACAA
1 GAGTCCAATATACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
*
16023409 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
*
16023474 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTTGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
16023539 TGAACTTGCGTTGTTTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAG
196 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAG
16023604 AAGTTATTTGTTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACATGAGTTGTCTGGAGTCCA
261 AAGTTATTTGTTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACATGAGTTGTCTGGAGTCCA
* *
16023669 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAATTTGTTTGTTGACAATCAGCGG
326 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGG
16023734 TCCCTTCGTC
Statistics
Matches: 378, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
460 334 0.88
461 44 0.12
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (461 bp):
GAGTCCAATATACTCTGTCGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCATGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAG
AAGTTATTTGTTGACAACCAGAGGTCCCTTCGTCGTGAAGTTGAACATGAGTTGTCTGGAGTCCA
ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAGTTGAGAAGTTGTTTGTTGACAACCAGCGG
CTCTAGTATTAGAAAATTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
TGTCTG
Found at i:16027280 original size:18 final size:19
Alignment explanation
Indices: 16027240--16027284 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
16027230 AGTTAATGTG
16027240 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
16027259 AATGCAAAGAAAATAA-AA
1 AATGCAAAGAAAATAACAA
16027277 AATGCAAA
1 AATGCAAA
16027285 ATGTCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.69, C:0.09, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:16027920 original size:17 final size:17
Alignment explanation
Indices: 16027894--16027926 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16027884 TGCAAACGAT
*
16027894 GAACACAAAATAAAAGA
1 GAACAAAAAATAAAAGA
16027911 GAACAAAAAATAAAAG
1 GAACAAAAAATAAAAG
16027927 GGTTAGTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.09, G:0.12, T:0.06
Consensus pattern (17 bp):
GAACAAAAAATAAAAGA
Found at i:16029037 original size:13 final size:13
Alignment explanation
Indices: 16029019--16029045 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16029009 CAAAAAAATA
16029019 AAAAATGATATAT
1 AAAAATGATATAT
16029032 AAAAATGATATAT
1 AAAAATGATATAT
16029045 A
1 A
16029046 TATATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (13 bp):
AAAAATGATATAT
Found at i:16029044 original size:2 final size:2
Alignment explanation
Indices: 16029039--16029087 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
16029029 TATAAAAATG
16029039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16029080 AT AT AT AT
1 AT AT AT AT
16029088 TATGAAAGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:16033598 original size:17 final size:17
Alignment explanation
Indices: 16033576--16033609 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16033566 CGTTGAAAAA
16033576 CATAAAATATGACTTTT
1 CATAAAATATGACTTTT
*
16033593 CATAAAATTTGACTTTT
1 CATAAAATATGACTTTT
16033610 TAGTCAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (17 bp):
CATAAAATATGACTTTT
Found at i:16033669 original size:38 final size:38
Alignment explanation
Indices: 16033618--16033691 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
16033608 TTTAGTCAAA
* *
16033618 GTCAAAGTTAACGGGTCGGGTCAAAGTTAATGGGTCGG
1 GTCAAAGTCAACGGGTCGGGTCAAAGTCAATGGGTCGG
*
16033656 GTCAAAGTCAACGGGTTGGGTCAAAGTCAATGGGTC
1 GTCAAAGTCAACGGGTCGGGTCAAAGTCAATGGGTC
16033692 ATGTTGACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (38 bp):
GTCAAAGTCAACGGGTCGGGTCAAAGTCAATGGGTCGG
Found at i:16033683 original size:19 final size:19
Alignment explanation
Indices: 16033618--16033691 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 19
16033608 TTTAGTCAAA
*
16033618 GTCAAAGTTAACGGGTCGG
1 GTCAAAGTCAACGGGTCGG
* *
16033637 GTCAAAGTTAATGGGTCGG
1 GTCAAAGTCAACGGGTCGG
*
16033656 GTCAAAGTCAACGGGTTGG
1 GTCAAAGTCAACGGGTCGG
*
16033675 GTCAAAGTCAATGGGTC
1 GTCAAAGTCAACGGGTC
16033692 ATGTTGACTC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (19 bp):
GTCAAAGTCAACGGGTCGG
Found at i:16034953 original size:84 final size:84
Alignment explanation
Indices: 16034860--16035488 Score: 768
Period size: 84 Copynumber: 7.5 Consensus size: 84
16034850 TCGAGACAGA
* *
16034860 AACACTAGAATATTTATCTTCGAGTTCCTTAACAAGTTGAGAAGAT-ATCTCGGGATTTTGGTCG
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAAT-TCGGGATTTTGGTCG
* *
16034924 GCAGAAGATCTCTAAGCAAC
65 GCAGAAGATCTCCAAGCAGC
* * * *** * ** *
16034944 AACACTAGAATATTTATCTTTGAGCTCTTTGGTAAGTTGAGAAGCTAATTCGGGATTTTTATCTG
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCGG
16035009 CAGAAGATCTCCAAGCAGC
66 CAGAAGATCTCCAAGCAGC
* * *
16035028 AACATTGGAATATTTATCTTCGAGCTCCTTAACAAATTGAGAAGATAAGTT-GGGATTTAT-TTC
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAA-TTCGGGATTT-TGGTC
*
16035091 GGCAGAAGATCTCCAGGCAGC
64 GGCAGAAGATCTCCAAGCAGC
*
16035112 AACATTAGAATATTTATCTTCGAGCTCCTTAACAA-TCTGAGAAGATAATTCGGGATTTTGGTCA
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGT-TGAGAAGATAATTCGGGATTTTGGTCG
* *
16035176 ACGGAAGATCTCCAAGCAGC
65 GCAGAAGATCTCCAAGCAGC
* * * * ** *
16035196 AACATTAGAGTATTTATCTTCGAGCT-CTTGGACAAGTTTAGAAGATAAGTCGGGATTTATTTTG
1 AACATTAGAATATTTATCTTCGAGCTCCTT-AACAAGTTGAGAAGATAATTCGGGATTT-TGGTC
*
16035260 GGTA-AAGATCTCCAAGCAGC
64 GGCAGAAGATCTCCAAGCAGC
* * * **
16035280 AACATTGGAATATTTATCTTCGAGCTCCTTAATAAGTTGAGAAGATAATTCGGGGTTTTGGTCTA
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCGG
16035345 CAGAAGATCTCCAAGCAGC
66 CAGAAGATCTCCAAGCAGC
* *
16035364 AACATTAGAGA-ATTTATCTTCGAGCTCCTTAATAAGTTGAGAAGGTAATTCGGGATTTTGGTCG
1 AACATTAGA-ATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCG
*
16035428 ACAGAAGATCTCCAAGCAGC
65 GCAGAAGATCTCCAAGCAGC
** * * *
16035448 AACATTAGAATATGAATCTTGGAGCTCTTTGACAAGTTGAG
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAG
16035489 GAAACTCTTT
Statistics
Matches: 468, Mismatches: 64, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
83 11 0.02
84 445 0.95
85 12 0.03
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (84 bp):
AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCGG
CAGAAGATCTCCAAGCAGC
Found at i:16035310 original size:252 final size:252
Alignment explanation
Indices: 16034860--16035488 Score: 867
Period size: 252 Copynumber: 2.5 Consensus size: 252
16034850 TCGAGACAGA
* *
16034860 AACACTAGAATATTTATCTTCGAGTTCCTTAACAAGTTGAGAAGAT-ATCTCGGGATTTTGGTCG
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAAT-TCGGGATTTTGGTCG
* * * * * *
16034924 GCAGAAGATCTCTAAGCAACAACACTAGAATATTTATCTTTGAGCTCTTTGG-TAAGTTGAGAAG
65 ACAGAAGATCTCCAAGCAGCAACATTAGAATATTTATCTTCGAGCTC-TTGGACAAGTTGAGAAG
* * *
16034988 CTAATTCGGGATTTTTATCTGCAGAAGATCTCCAAGCAGCAACATTGGAATATTTATCTTCGAGC
129 ATAAGTCGGGATTTTTATCGGCAGAAGATCTCCAAGCAGCAACATTGGAATATTTATCTTCGAGC
* * *
16035053 TCCTTAACAAATTGAGAAGATAAGTT-GGGATTTAT-TTCGGCAGAAGATCTCCAGGCAGC
194 TCCTTAACAAATTGAGAAGATAA-TTCGGGATTT-TGGTCGACAGAAGATCTCCAAGCAGC
*
16035112 AACATTAGAATATTTATCTTCGAGCTCCTTAACAA-TCTGAGAAGATAATTCGGGATTTTGGTCA
1 AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGT-TGAGAAGATAATTCGGGATTTTGGTCG
* * *
16035176 ACGGAAGATCTCCAAGCAGCAACATTAGAGTATTTATCTTCGAGCTCTTGGACAAGTTTAGAAGA
65 ACAGAAGATCTCCAAGCAGCAACATTAGAATATTTATCTTCGAGCTCTTGGACAAGTTGAGAAGA
* * *
16035241 TAAGTCGGGATTTATTTTGGGTA-AAGATCTCCAAGCAGCAACATTGGAATATTTATCTTCGAGC
130 TAAGTCGGGATTT-TTATCGGCAGAAGATCTCCAAGCAGCAACATTGGAATATTTATCTTCGAGC
* * * *
16035305 TCCTTAATAAGTTGAGAAGATAATTCGGGGTTTTGGTCTACAGAAGATCTCCAAGCAGC
194 TCCTTAACAAATTGAGAAGATAATTCGGGATTTTGGTCGACAGAAGATCTCCAAGCAGC
* *
16035364 AACATTAGAGA-ATTTATCTTCGAGCTCCTTAATAAGTTGAGAAGGTAATTCGGGATTTTGGTCG
1 AACATTAGA-ATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCG
** * *
16035428 ACAGAAGATCTCCAAGCAGCAACATTAGAATATGAATCTTGGAGCTCTTTGACAAGTTGAG
65 ACAGAAGATCTCCAAGCAGCAACATTAGAATATTTATCTTCGAGCTCTTGGACAAGTTGAG
16035489 GAAACTCTTT
Statistics
Matches: 334, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
251 8 0.02
252 317 0.95
253 9 0.03
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (252 bp):
AACATTAGAATATTTATCTTCGAGCTCCTTAACAAGTTGAGAAGATAATTCGGGATTTTGGTCGA
CAGAAGATCTCCAAGCAGCAACATTAGAATATTTATCTTCGAGCTCTTGGACAAGTTGAGAAGAT
AAGTCGGGATTTTTATCGGCAGAAGATCTCCAAGCAGCAACATTGGAATATTTATCTTCGAGCTC
CTTAACAAATTGAGAAGATAATTCGGGATTTTGGTCGACAGAAGATCTCCAAGCAGC
Found at i:16036351 original size:18 final size:18
Alignment explanation
Indices: 16036328--16036362 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
16036318 TGGATTCTTC
16036328 TTTTTATTCTTTTAATAG
1 TTTTTATTCTTTTAATAG
16036346 TTTTTATTCTTTTAATA
1 TTTTTATTCTTTTAATA
16036363 ATATGTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTATTCTTTTAATAG
Found at i:16037785 original size:12 final size:12
Alignment explanation
Indices: 16037770--16037794 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16037760 TTTTGTTCAT
16037770 TTTTTTTCCTTC
1 TTTTTTTCCTTC
16037782 TTTTTTTCCTTC
1 TTTTTTTCCTTC
16037794 T
1 T
16037795 ATAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTTTCCTTC
Found at i:16040901 original size:16 final size:17
Alignment explanation
Indices: 16040866--16040902 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
16040856 ATGGGATGAA
16040866 AAAAATAGTATTATTGT
1 AAAAATAGTATTATTGT
16040883 AAAAAT-GTAATTATT-T
1 AAAAATAGT-ATTATTGT
16040899 AAAA
1 AAAA
16040903 TAATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (17 bp):
AAAAATAGTATTATTGT
Found at i:16042223 original size:229 final size:228
Alignment explanation
Indices: 16041818--16042304 Score: 857
Period size: 229 Copynumber: 2.1 Consensus size: 228
16041808 GTAAATTATC
* * * *
16041818 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTAACTGTGAAAACATATTTATTATTATATTTAGT
*
16041883 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
*
16041948 TGTGTAAATGAAATTTTTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
16042013 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTTCAAAAAAGTATA
*
16042046 TATCATTTTTATAAAAGTGTCCATACTTATTTAACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTAACTG-TGAAAACATATTTATTATTATATTTAG
*
16042111 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
* *
16042176 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
*
16042241 GAAACATAAATTACATAACTTTCAAAGAAGTATA
195 GAAACATAAATTACATAACTTTCAAAAAAGTATA
*
16042275 TATCATTTTTATAAAAGTGTTCATACTTAT
1 TATCATTTTTATAAAAGTGTCCATACTTAT
16042305 AAAAGTAGGT
Statistics
Matches: 246, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
228 35 0.14
229 211 0.86
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (228 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTAACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTCAAAAAAGTATA
Found at i:16042606 original size:20 final size:19
Alignment explanation
Indices: 16042583--16042629 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
16042573 CGATATACCA
16042583 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
16042603 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
16042623 GGTAAAA
1 GGTAAAA
16042630 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:16042738 original size:180 final size:181
Alignment explanation
Indices: 16042371--16042840 Score: 669
Period size: 180 Copynumber: 2.6 Consensus size: 181
16042361 GATCCAAATT
* * * * *
16042371 AAAAATGTGTCGATCCAAAAAGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGAT
* * * * *
16042435 AAAACCGGTCAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATA-TTAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* * *
16042500 CGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
129 CGTGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
*
16042553 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* *
16042618 AAACCGGTAAAACGTTACCGGATATATTAAAGTGTCGATACTTT-ATATAAGGATCGACACTTTG
66 AAACCGGTAAAACGATACCGGATATATTAAAGTGTCGATACTTTAATATAAGGATCGACACTTCG
** *
16042682 TGAATTTAAAAGAGAAGCAGTTATAGCGCCTATAATGTGTCGATACTTTAA
131 TGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
* * * *
16042733 AAAAATATATCGATCCACAACGATATAACAGGT-AAAATATGATAAAATCGGTATCAAAATGAT-
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
*
16042796 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATT-AAAGTGTCGATACTTT
16042841 CGTAAGTACG
Statistics
Matches: 261, Mismatches: 25, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
178 26 0.10
179 44 0.17
180 94 0.36
181 18 0.07
182 79 0.30
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (181 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAGTGTCGATACTTTAATATAAGGATCGACACTTCG
TGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:16045069 original size:21 final size:21
Alignment explanation
Indices: 16045042--16045105 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
16045032 AAGACAATCA
*
16045042 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
* * *
16045063 CGAGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
16045084 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
16045105 A
1 A
16045106 TGCATAAGGG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.39, C:0.14, G:0.30, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:16045182 original size:33 final size:33
Alignment explanation
Indices: 16045140--16045205 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
16045130 AAATAGATGG
*
16045140 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
16045173 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
16045206 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:16046980 original size:19 final size:19
Alignment explanation
Indices: 16046956--16047004 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
16046946 AATGTAGGGT
16046956 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
16046975 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
16046994 TATTTTTGTAT
1 TAATTTTGTAT
16047005 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:16047596 original size:199 final size:199
Alignment explanation
Indices: 16047113--16048272 Score: 2115
Period size: 199 Copynumber: 5.8 Consensus size: 199
16047103 GGCAAATTTA
* * * *
16047113 CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCTAAAAACATCGAAAACCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
*
16047178 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAA
16047243 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAATGGAAAACAGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAATGGAAAACAGG
16047308 GTGCAC
194 GTGCAC
* *
16047314 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCAAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
16047379 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
16047444 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16047509 GCAC
196 GCAC
*
16047513 CCATAAAGTTTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* * * * *
16047578 GTAATATGTAATTTTTCAATCTAACCGATACAATTATACCGGTTTTATAAGATAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
16047643 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16047708 GCAC
196 GCAC
16047712 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
16047777 GTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
16047842 TAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16047906 GCAC
196 GCAC
*
16047910 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
16047975 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
16048040 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16048105 GCAC
196 GCAC
16048109 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
16048174 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
*
16048239 TAATGTGTCGTCACTAATATAGTTTGTGTCGATA
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATA
16048273 CTAATTTAAA
Statistics
Matches: 931, Mismatches: 27, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
198 194 0.21
199 581 0.62
200 111 0.12
201 45 0.05
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (199 bp):
CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
GCAC
Found at i:16048015 original size:397 final size:398
Alignment explanation
Indices: 16047113--16048272 Score: 2133
Period size: 397 Copynumber: 2.9 Consensus size: 398
16047103 GGCAAATTTA
* * * *
16047113 CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCTAAAAACATCGAAAACCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
* *
16047178 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAA
16047243 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAATGGAAAACAGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAATGGAAAACAGG
* *
16047308 GTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCAAACCCAAAAG
194 GTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAG
*
16047373 TATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATG
259 TATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATG
16047438 TCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAA
324 TCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAA
16047503 CAGGGTGCAC
389 CAGGGTGCAC
*
16047513 CCATAAAGTTTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* * * *
16047578 GTAATATGTAATTTTTCAATCTAACCGATACAATTATACCGGTTTTATAAGATAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAAA
16047643 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16047708 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
196 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
16047773 TAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAGAGAATATGTC
261 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
16047838 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATGGAAAACA
326 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACA
16047902 GGGTGCAC
391 GGGTGCAC
*
16047910 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
16047975 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAAA
16048040 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
16048105 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
196 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
16048170 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTC
261 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
*
16048235 TAAATAATGTGTCGTCACTAATATAGTTTGTGTCGATA
326 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
16048273 CTAATTTAAA
Statistics
Matches: 736, Mismatches: 24, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
397 388 0.53
398 195 0.26
399 108 0.15
400 45 0.06
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (398 bp):
CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGATAATATGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACA
GGGTGCAC
Found at i:16049755 original size:12 final size:11
Alignment explanation
Indices: 16049738--16049796 Score: 55
Period size: 12 Copynumber: 4.9 Consensus size: 11
16049728 GGTCGCAGAA
16049738 GATGAAACTGAC
1 GATGAAA-TGAC
16049750 GATGAAGATGAC
1 GATGAA-ATGAC
*
16049762 GATGATGATGAC
1 GATGA-AATGAC
*
16049774 GATGAAGATGGC
1 GATGAA-ATGAC
16049786 GATGAAGATGA
1 GATGAA-ATGA
16049797 TGACGATGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
12 39 0.98
13 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.34, T:0.19
Consensus pattern (11 bp):
GATGAAATGAC
Found at i:16049758 original size:18 final size:17
Alignment explanation
Indices: 16049735--16049826 Score: 75
Period size: 18 Copynumber: 5.5 Consensus size: 17
16049725 AGCGGTCGCA
16049735 GAAGATGAAACTGACGAT
1 GAAGATGAAA-TGACGAT
* *
16049753 GAAGATGACGATGATGAT
1 GAAGATGA-AATGACGAT
* *
16049771 GACGATGAAGATGGCGAT
1 GAAGATGAA-ATGACGAT
16049789 GAAGATG--ATGACGAT
1 GAAGATGAAATGACGAT
* *
16049804 GATGATG--ATGATGAT
1 GAAGATGAAATGACGAT
16049819 GAAGATGA
1 GAAGATGA
16049827 TGATACAAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
15 26 0.43
18 33 0.55
19 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.34, T:0.21
Consensus pattern (17 bp):
GAAGATGAAATGACGAT
Found at i:16049765 original size:6 final size:6
Alignment explanation
Indices: 16049750--16049830 Score: 81
Period size: 6 Copynumber: 13.5 Consensus size: 6
16049740 TGAAACTGAC
* * * * ** *
16049750 GATGAA GATGAC GATGAT GATGAC GATGAA GATGGC GATGAA GATGAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
* *
16049798 GACGAT GATGAT GATGAT GATGAA GATGAT GAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GAT
16049831 ACAAACAAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.23
Consensus pattern (6 bp):
GATGAT
Found at i:16049766 original size:24 final size:23
Alignment explanation
Indices: 16049738--16049826 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 23
16049728 GGTCGCAGAA
16049738 GATGAAACTGACGATGAAGATGAC
1 GATGAAA-TGACGATGAAGATGAC
* *
16049762 GATGATGATGACGATGAAGATGGC
1 GATGA-AATGACGATGAAGATGAC
* * *
16049786 GATG-AA-GATGATGACGATGAT
1 GATGAAATGACGATGAAGATGAC
*
16049807 GATG--ATGATGATGAAGATGA
1 GATGAAATGACGATGAAGATGA
16049827 TGATACAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
20 1 0.02
21 28 0.51
22 1 0.02
24 24 0.44
25 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.34, T:0.21
Consensus pattern (23 bp):
GATGAAATGACGATGAAGATGAC
Found at i:16049807 original size:12 final size:12
Alignment explanation
Indices: 16049746--16049830 Score: 98
Period size: 12 Copynumber: 7.1 Consensus size: 12
16049736 AAGATGAAAC
*
16049746 TGACGATGAAGA
1 TGACGATGATGA
16049758 TGACGATGATGA
1 TGACGATGATGA
*
16049770 TGACGATGAAGA
1 TGACGATGATGA
* *
16049782 TGGCGATGAAGA
1 TGACGATGATGA
* *
16049794 TGATGACGATGA
1 TGACGATGATGA
*
16049806 TGATGATGATGA
1 TGACGATGATGA
*
16049818 TGAAGATGATGA
1 TGACGATGATGA
16049830 T
1 T
16049831 ACAAACAAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 64 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (12 bp):
TGACGATGATGA
Found at i:16049818 original size:9 final size:9
Alignment explanation
Indices: 16049750--16049830 Score: 81
Period size: 9 Copynumber: 9.0 Consensus size: 9
16049740 TGAAACTGAC
*
16049750 GATGAAGAT
1 GATGATGAT
*
16049759 GACGATGAT
1 GATGATGAT
*
16049768 GATGACGAT
1 GATGATGAT
* **
16049777 GAAGATGGC
1 GATGATGAT
*
16049786 GATGAAGAT
1 GATGATGAT
*
16049795 GATGACGAT
1 GATGATGAT
16049804 GATGATGAT
1 GATGATGAT
*
16049813 GATGATGAA
1 GATGATGAT
16049822 GATGATGAT
1 GATGATGAT
16049831 ACAAACAAGT
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.23
Consensus pattern (9 bp):
GATGATGAT
Found at i:16051601 original size:183 final size:182
Alignment explanation
Indices: 16051291--16051776 Score: 828
Period size: 183 Copynumber: 2.7 Consensus size: 182
16051281 TTCAACATAT
* *
16051291 TATAAATATACCGGTTTTTTGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
* * *
16051356 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTTAAAAAGTGTCGACATTT
66 TCGGTACTTTATGTCCAAATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTATCGACATTT
*
16051421 ACACATCGGAACCCATAATTATAATGTAATAGATAATTTTATAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAACCGG
*
16051474 TATAAATATATCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
*
16051539 TCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTATCGACATTT
66 TCGGTACTTTATGTCCAAATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTATCGACATTT
* *
16051604 ACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAACCGG
* *
16051657 TATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
*
16051722 TCGGTACTTTATATCCAAATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGT
66 TCGGTACTTTATGTCCAAATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGT
16051777 GTCGGTAATT
Statistics
Matches: 287, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
183 283 0.99
184 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (182 bp):
TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
TCGGTACTTTATGTCCAAATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTATCGACATTTA
CACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAACCGG
Found at i:16054277 original size:25 final size:25
Alignment explanation
Indices: 16054249--16054313 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
16054239 TTATCATTAA
16054249 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
16054274 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
16054299 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
16054314 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:16054687 original size:23 final size:23
Alignment explanation
Indices: 16054656--16054728 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
16054646 ATAGGTAAAC
*
16054656 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16054679 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16054702 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
16054725 ATAT
1 ATAT
16054729 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:16055173 original size:18 final size:18
Alignment explanation
Indices: 16055152--16055188 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
16055142 GTAATTGGAG
16055152 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
16055170 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
16055188 T
1 T
16055189 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:16055196 original size:24 final size:24
Alignment explanation
Indices: 16055144--16055190 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
16055134 TTTCATATGT
* *
16055144 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
16055168 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
16055191 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:16055490 original size:39 final size:39
Alignment explanation
Indices: 16055447--16055533 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
16055437 TCTGATGATC
*
16055447 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
16055486 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
16055525 ATCAAAATC
1 ATCAAAATC
16055534 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:16055937 original size:22 final size:22
Alignment explanation
Indices: 16055892--16055937 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
16055882 ATTACATAAC
* *
16055892 TTTTAAAAAAAATATCGATCCT
1 TTTTAAAAAAAATATAGATACT
* *
16055914 TTTTATAAAAAGTATAGATACT
1 TTTTAAAAAAAATATAGATACT
16055936 TT
1 TT
16055938 CAATATAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (22 bp):
TTTTAAAAAAAATATAGATACT
Found at i:16056015 original size:23 final size:23
Alignment explanation
Indices: 16055955--16056027 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
16055945 ATAGGTAAAC
* *
16055955 ATATGATGTAATAGCTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16055978 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16056001 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
16056024 ATAT
1 ATAT
16056028 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:16057400 original size:23 final size:24
Alignment explanation
Indices: 16057354--16057400 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
16057344 AAGGTATGAT
*
16057354 TTTTTATTTATATTAATTTAAATC
1 TTTTTATTTATATTAATATAAATC
* *
16057378 TTTTTA-TTATTTTAATATCAATC
1 TTTTTATTTATATTAATATAAATC
16057401 ATTCATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTTATTTATATTAATATAAATC
Found at i:16059671 original size:2 final size:2
Alignment explanation
Indices: 16059664--16059703 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
16059654 GAAGATTTTA
16059664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16059704 GAATTTAGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16061871 original size:143 final size:141
Alignment explanation
Indices: 16061631--16062049 Score: 540
Period size: 143 Copynumber: 2.9 Consensus size: 141
16061621 CAATGGCCAG
*
16061631 TTAATTATCTTAAATAACTTTTCAGTGATATATCAACTCATTTCAACAAACTTTTCAGTGATGAT
1 TTAATTATCTTAAGTAACTTTTCAGTGATATATCAACTCATTTCAACAAACTTTTCAGTGATGAT
*
16061696 ATATGACTTT-ATAATAGAAAAACGTGCATTTCTATTAGGCAAAATAATGCACCATGGCATAAAC
66 ATATCA-TTTCAT-ATAGAAAAACGTGCATTTCTATTAGGCAAAATAATGCACCATGGCATAAAC
16061760 ATTTTAGTGCCCAA
129 -TTTTAGTGCCCAA
* ** * *
16061774 TTAATTATCTTAAGCAACTTTTCAGTGATATATCAACTCATTTCAGTAAACGTTTCAGTGGTGAT
1 TTAATTATCTTAAGTAACTTTTCAGTGATATATCAACTCATTTCAACAAACTTTTCAGTGATGAT
* * *
16061839 ATATTATTTCATATCAGAAAAACGTGCATTTCTGA-TAGGCAAAATAATGCACCATGGCAGAATC
66 ATATCATTTCATAT-AGAAAAACGTGCATTTCT-ATTAGGCAAAATAATGCACCATGGCATAAAC
16061903 TTTTCAGTGCCCAA
129 TTTT-AGTGCCCAA
* * * * * * **
16061917 TTAATTATCTTTAGTAATTTTTTAGTAATATATCAACTCATTTAAACAAAATTTTCAGTTTTGAT
1 TTAATTATCTTAAGTAACTTTTCAGTGATATATCAACTCATTTCAACAAACTTTTCAGTGATGAT
* * *
16061982 ACATCACTTCATATAAGAAAAACATGCACTTGTC-ATT-GGCAAAATAATGCACCATGGCATAAA
66 ATATCATTTCATAT-AGAAAAACGTGCA-TT-TCTATTAGGCAAAATAATGCACCATGGCATAAA
16062045 CTTTT
128 CTTTT
16062050 CATAAACCTA
Statistics
Matches: 241, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
142 9 0.04
143 226 0.94
144 4 0.02
145 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (141 bp):
TTAATTATCTTAAGTAACTTTTCAGTGATATATCAACTCATTTCAACAAACTTTTCAGTGATGAT
ATATCATTTCATATAGAAAAACGTGCATTTCTATTAGGCAAAATAATGCACCATGGCATAAACTT
TTAGTGCCCAA
Found at i:16080824 original size:20 final size:20
Alignment explanation
Indices: 16080799--16080843 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
16080789 TTAACTTTTT
*
16080799 CTTTTCTCTTTC-TTCCTTAA
1 CTTTTCTATTTCATT-CTTAA
*
16080819 CTTTTCTATTTCATTTTTAA
1 CTTTTCTATTTCATTCTTAA
16080839 CTTTT
1 CTTTT
16080844 ACTTTTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTCTATTTCATTCTTAA
Found at i:16084035 original size:23 final size:23
Alignment explanation
Indices: 16084005--16084053 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
16083995 TGGTGGTTGG
*
16084005 TTTAATGG-ATGTTTAGACTTTAT
1 TTTAATGGTATATTTA-ACTTTAT
*
16084028 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
16084051 TTT
1 TTT
16084054 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:16086115 original size:24 final size:24
Alignment explanation
Indices: 16086080--16086135 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
16086070 GAGACATTTA
*
16086080 TTTGGATTTTGGTATCCAAATTGC
1 TTTGGATCTTGGTATCCAAATTGC
16086104 TTTGGATCTTGGTATCCAAATTGC
1 TTTGGATCTTGGTATCCAAATTGC
16086128 TTTGGATC
1 TTTGGATC
16086136 CTTGAGCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.45
Consensus pattern (24 bp):
TTTGGATCTTGGTATCCAAATTGC
Found at i:16088643 original size:25 final size:25
Alignment explanation
Indices: 16088609--16088670 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
16088599 CCCCTTACTC
16088609 TAACACTTCTCCCCATTAAACACTT
1 TAACACTTCTCCCCATTAAACACTT
16088634 TAACACTTCTCCCCATTAAACACTT
1 TAACACTTCTCCCCATTAAACACTT
*
16088659 TAACATTTCTCC
1 TAACACTTCTCC
16088671 TACTTTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.34
Consensus pattern (25 bp):
TAACACTTCTCCCCATTAAACACTT
Found at i:16090436 original size:23 final size:22
Alignment explanation
Indices: 16090387--16090468 Score: 87
Period size: 23 Copynumber: 3.7 Consensus size: 22
16090377 AGAACCCGTG
* *
16090387 GGGGGTATCGATTCCC--TCAA
1 GGGGGAATCGGTTCCCATTCAA
*
16090407 GGAGGGAATCAGTTCCCATTCAAA
1 GG-GGGAATCGGTTCCCATTC-AA
*
16090431 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGGTTCCCATTCAA
*
16090453 GGGGGTATCGGTTCCC
1 GGGGGAATCGGTTCCC
16090469 TCTGCACTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
20 2 0.04
21 11 0.21
22 17 0.33
23 18 0.35
24 4 0.08
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (22 bp):
GGGGGAATCGGTTCCCATTCAA
Found at i:16090457 original size:22 final size:22
Alignment explanation
Indices: 16090387--16090468 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 22
16090377 AGAACCCGTG
* *
16090387 GGGGGTATCGATT-CCC-TCAA
1 GGGGGAATCGGTTCCCCTTCAA
* *
16090407 GGAGGGAATCAGTTCCCATTCAAA
1 GG-GGGAATCGGTTCCCCTTC-AA
16090431 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGGTTCCCCTTCAA
*
16090453 GGGGGTATCGGTTCCC
1 GGGGGAATCGGTTCCC
16090469 TCTGCACTAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.04
21 8 0.16
22 19 0.37
23 18 0.35
24 4 0.08
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (22 bp):
GGGGGAATCGGTTCCCCTTCAA
Found at i:16094526 original size:116 final size:117
Alignment explanation
Indices: 16094312--16094526 Score: 267
Period size: 116 Copynumber: 1.8 Consensus size: 117
16094302 AAATCGAAGT
* *
16094312 TTTCTTTTTCAATACTTTCAAATTTTATTTTTGAAAGCTCTAAATCCTTCTTCAAGATTTCATTT
1 TTTCTTTTTCAATACTTTCAAATTTTATTTTTGAAAGCTCTAAATCCTTCTTCAACATTTAATTT
* *
16094377 TGATTTTCAAAATCCATTTTCGTTTCTAGAAGAAGTTTGTTTAATTTGAAAA
66 TGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTTGAAAA
* ** *
16094429 TTTCTTTTTCAA-AGTTTTCAGTTTTTA-TTTTGAAAGCTCTAACTCCTT-TCTCAACATTTAAT
1 TTTCTTTTTCAATA-CTTTCAAATTTTATTTTTGAAAGCTCTAAATCCTTCT-TCAACATTTAAT
* * **
16094491 TTTGATTTTCCAAGTCTGTTTTAGCTTTC-AAAAGAA
64 TTTGATTTTCAAAATCCATTTTAG-TTTCTAAAAGAA
16094527 TATCATTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
115 1 0.01
116 56 0.67
117 26 0.31
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (117 bp):
TTTCTTTTTCAATACTTTCAAATTTTATTTTTGAAAGCTCTAAATCCTTCTTCAACATTTAATTT
TGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTTGAAAA
Found at i:16096933 original size:20 final size:20
Alignment explanation
Indices: 16096908--16096955 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
16096898 TGAGCCTGAC
16096908 GGTATCGATATTAACCCTAT
1 GGTATCGATATTAACCCTAT
*
16096928 GGTATCGATATTAAGCCTAT
1 GGTATCGATATTAACCCTAT
16096948 GGTATCGA
1 GGTATCGA
16096956 CACTACTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (20 bp):
GGTATCGATATTAACCCTAT
Found at i:16098733 original size:8 final size:8
Alignment explanation
Indices: 16098720--16098781 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
16098710 AATGTTTTAA
16098720 AATGATTT
1 AATGATTT
16098728 AATGATTT
1 AATGATTT
*
16098736 AAT-A-AT
1 AATGATTT
16098742 AATG-TTT
1 AATGATTT
16098749 AAATGATTT
1 -AATGATTT
*
16098758 AAT-A-AT
1 AATGATTT
16098764 AATGATTT
1 AATGATTT
16098772 AAATGATTT
1 -AATGATTT
16098781 A
1 A
16098782 TTAATAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
6 8 0.19
7 4 0.09
8 20 0.47
9 11 0.26
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (8 bp):
AATGATTT
Found at i:16098769 original size:14 final size:14
Alignment explanation
Indices: 16098727--16098773 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
16098717 TAAAATGATT
16098727 TAATGATTTAATAA
1 TAATGATTTAATAA
16098741 TAATG--TT--T-A
1 TAATGATTTAATAA
16098750 -AATGATTTAATAA
1 TAATGATTTAATAA
16098763 TAATGATTTAA
1 TAATGATTTAA
16098774 ATGATTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
8 4 0.15
9 1 0.04
10 3 0.11
12 3 0.11
13 1 0.04
14 15 0.56
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:16098776 original size:23 final size:23
Alignment explanation
Indices: 16098720--16098789 Score: 117
Period size: 22 Copynumber: 3.1 Consensus size: 23
16098710 AATGTTTTAA
16098720 AATGATTT-AATGATTTAATAAT
1 AATGATTTAAATGATTTAATAAT
16098742 AATG-TTTAAATGATTTAATAAT
1 AATGATTTAAATGATTTAATAAT
*
16098764 AATGATTTAAATGATTTATTAAT
1 AATGATTTAAATGATTTAATAAT
16098787 AAT
1 AAT
16098790 AACTTAGTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
21 3 0.07
22 22 0.49
23 20 0.44
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (23 bp):
AATGATTTAAATGATTTAATAAT
Found at i:16098854 original size:31 final size:29
Alignment explanation
Indices: 16098805--16098871 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 29
16098795 AGTAATATTT
* *
16098805 ATATTTTTTATTTGAATGAATGTTTGTAA
1 ATATTTTTTATTTAAATGAATATTTGTAA
*
16098834 ATATTATTTCTATTTAAATGAATATTTTTAA
1 ATATT-TTT-TATTTAAATGAATATTTGTAA
16098865 ATGATTT
1 AT-ATTT
16098872 AATAATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 5 0.16
30 3 0.09
31 21 0.66
32 3 0.09
ACGTcount: A:0.34, C:0.01, G:0.09, T:0.55
Consensus pattern (29 bp):
ATATTTTTTATTTAAATGAATATTTGTAA
Found at i:16098885 original size:14 final size:14
Alignment explanation
Indices: 16098868--16098989 Score: 77
Period size: 14 Copynumber: 9.5 Consensus size: 14
16098858 TTTTTAAATG
16098868 ATTTAATAATAATA
1 ATTTAATAATAATA
** *
16098882 ATTTAATGCTATTA
1 ATTTAATAATAATA
16098896 A-TT--TAATAATA
1 ATTTAATAATAATA
* *
16098907 A-TTACTAATAATG
1 ATTTAATAATAATA
* *
16098920 ATTTAATATTAATG
1 ATTTAATAATAATA
16098934 ATTTAATAATAAT-
1 ATTTAATAATAATA
*
16098947 A--T--T--TAATG
1 ATTTAATAATAATA
* *
16098955 ATTTAATACTAATG
1 ATTTAATAATAATA
16098969 ATTTAATAATAATA
1 ATTTAATAATAATA
16098983 ATTTAAT
1 ATTTAAT
16098990 GATTTGATAC
Statistics
Matches: 86, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
7 4 0.05
8 1 0.01
9 1 0.01
10 1 0.01
11 9 0.10
12 1 0.01
13 11 0.13
14 58 0.67
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (14 bp):
ATTTAATAATAATA
Found at i:16098903 original size:113 final size:114
Alignment explanation
Indices: 16098690--16098904 Score: 273
Period size: 114 Copynumber: 1.9 Consensus size: 114
16098680 ATGTTTGTAA
16098690 ATATTATTTCTATTTGAATGAATGTTTTAAAATGATTTAATGATTTAATAATAATGTTTAAATGA
1 ATATTATTTCTATTTGAATGAATGTTTTAAAATGATTTAATGATTTAATAATAATGTTTAAATGA
* *
16098755 TTTAATAATAATGATTTAAATGATTTATTAATAATAACTTAGTAATATTT
66 TTTAATAATAATAATTTAAATGATTAATT-ATAATAACTTAGTAATATTT
* * *
16098805 ATATT-TTT-TATTTGAATGAATGTTTGTAAATATTATTT-CT-ATTTAAATGAAT-ATTTTTAA
1 ATATTATTTCTATTTGAATGAATGTTT-TAAA-ATGATTTAATGATTT-AAT-AATAATGTTTAA
16098865 ATGATTTAATAATAATAATTT-AATGCTATTAATT-TAATAA
62 ATGATTTAATAATAATAATTTAAATG--ATTAATTATAATAA
16098905 TAATTACTAA
Statistics
Matches: 89, Mismatches: 5, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
113 31 0.35
114 38 0.43
115 20 0.22
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (114 bp):
ATATTATTTCTATTTGAATGAATGTTTTAAAATGATTTAATGATTTAATAATAATGTTTAAATGA
TTTAATAATAATAATTTAAATGATTAATTATAATAACTTAGTAATATTT
Found at i:16098924 original size:38 final size:37
Alignment explanation
Indices: 16098874--16099029 Score: 183
Period size: 38 Copynumber: 4.2 Consensus size: 37
16098864 AATGATTTAA
* * * *
16098874 TAATAATAATTTAATGCTATTAATTTAATAATAATTAC
1 TAATAATGATTTAATACTAATGATTTAATAATAA-TAC
*
16098912 TAATAATGATTTAATATTAATGATTTAATAATAATA-
1 TAATAATGATTTAATACTAATGATTTAATAATAATAC
* *
16098948 T-TTAATGATTTAATACTAATGATTTAATAATAATAA
1 TAATAATGATTTAATACTAATGATTTAATAATAATAC
* * *
16098984 T-TTAATGATTTGATACTAATGATTTAATAATGATTAC
1 TAATAATGATTTAATACTAATGATTTAATAAT-AATAC
16099021 TAATAATGA
1 TAATAATGA
16099030 AATTATAATA
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
35 32 0.31
36 31 0.30
37 6 0.06
38 35 0.34
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (37 bp):
TAATAATGATTTAATACTAATGATTTAATAATAATAC
Found at i:16098930 original size:35 final size:33
Alignment explanation
Indices: 16098891--16099003 Score: 93
Period size: 35 Copynumber: 3.2 Consensus size: 33
16098881 AATTTAATGC
16098891 TATTAATTTAATAATAATTACTAATAATGATTTAA
1 TATTAATTTAATAATAA-TACT-ATAATGATTTAA
*
16098926 TATTAATGATTTAATAATAATA-TTTAATGATTTAA
1 TATT-A--ATTTAATAATAATACTATAATGATTTAA
* * * *
16098961 TACTAATGATTTAATAATAATAATTTAATGATTTGA
1 TA-T--TAATTTAATAATAATACTATAATGATTTAA
*
16098997 TACTAAT
1 TATTAAT
16099004 GATTTAATAA
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
33 3 0.05
35 31 0.47
36 17 0.26
37 2 0.03
38 13 0.20
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (33 bp):
TATTAATTTAATAATAATACTATAATGATTTAA
Done.