Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 73 of 73
Found at i:16792018 original size:102 final size:102
Alignment explanation
Indices: 16791890--16792283 Score: 637
Period size: 102 Copynumber: 3.8 Consensus size: 102
16791880 GAGAGAGAAA
* * *
16791890 TTGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTTAGTTCCAAAAGAAACTATCTCAAGGGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
** *
16791955 GATAAAATTTGTTTAAAGGAAAACAAATTCAAAGATT
66 GACGAAATTTGTTTAAAGGAAAACAGATTCAAAGATT
*
16791992 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
* *
16792057 GACGAAATTTGTTTCAAGGAAAACAGATTCCAAGATTT
66 GACGAAATTTGTTTAAAGGAAAACAGATTCAAAGA-TT
* *
16792095 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAA-AAATTGTCTTAAGGGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
*
16792159 GACGAAATTTGTTTCAAGGAAAACAGATTCAAAGATT
66 GACGAAATTTGTTTAAAGGAAAACAGATTCAAAGATT
*
16792196 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
16792261 GACGAAATTTGTTTTAAGAGGAA
66 GACGAAATTTG-TTTAA-AGGAA
16792284 CTGTCTCAAG
Statistics
Matches: 271, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
101 49 0.18
102 164 0.61
103 53 0.20
104 5 0.02
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (102 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
GACGAAATTTGTTTAAAGGAAAACAGATTCAAAGATT
Found at i:16793733 original size:83 final size:88
Alignment explanation
Indices: 16793628--16793853 Score: 266
Period size: 95 Copynumber: 2.5 Consensus size: 88
16793618 GGCTAGCTGA
* * * *
16793628 ATCCATAAAACCAGGGCGTTTAACCAATTGCTCTAGAGGGACAACTC-C-A-TAT-TTAAAT-AC
1 ATCCATAAAGCCGGGGTGTTTAACCAATTGCTCTAGAGGGACAACTCACTATTATATAAAATCAC
** *
16793688 CTTCATCAGGTTAGCTGAATCTT
66 CTTCATCAGACTAGCTGAATATT
16793711 ATCCATAAAGCCGGGGTGTTTAACCAATTGC-CTTAGAGGGACAACTCAAGCTTTATTGTATAGT
1 ATCCATAAAGCCGGGGTGTTTAACCAATTGCTC-TAGAGGGACAACTC-A-C--TA-T-TATA-T
*
16793775 AAAATCACCTTTATCAGACTAGCTGAATATT
58 AAAATCACCTTCATCAGACTAGCTGAATATT
16793806 ATCCATAAAGCCGGGGTGTTTAACCAATTGCTCTAGAGGGACAACTCA
1 ATCCATAAAGCCGGGGTGTTTAACCAATTGCTCTAGAGGGACAACTCA
16793854 AGCTTTATAG
Statistics
Matches: 121, Mismatches: 8, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
82 1 0.01
83 42 0.35
86 1 0.01
89 1 0.01
92 3 0.02
94 6 0.05
95 66 0.55
96 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (88 bp):
ATCCATAAAGCCGGGGTGTTTAACCAATTGCTCTAGAGGGACAACTCACTATTATATAAAATCAC
CTTCATCAGACTAGCTGAATATT
Found at i:16793849 original size:95 final size:94
Alignment explanation
Indices: 16793682--16793867 Score: 302
Period size: 95 Copynumber: 2.0 Consensus size: 94
16793672 CTCCATATTT
** *
16793682 AAATACCTTCATCAGGTTAGCTGAATCTTATCCATAAAGCCGGGGTGTTTAACCAATTGCCTTAG
1 AAATACCTTCATCAGACTAGCTGAATATTATCCATAAAGCCGGGGTGTTTAACCAATTGCCTTAG
*
16793747 AGGGACAACTCAAGCTTTATTGTATAGTA
66 AGGGACAACTCAAGCTTTATAGTATAGTA
*
16793776 AAATCACCTTTATCAGACTAGCTGAATATTATCCATAAAGCCGGGGTGTTTAACCAATTG-CTCT
1 AAAT-ACCTTCATCAGACTAGCTGAATATTATCCATAAAGCCGGGGTGTTTAACCAATTGCCT-T
16793840 AGAGGGACAACTCAAGCTTTATAGTATA
64 AGAGGGACAACTCAAGCTTTATAGTATA
16793868 TATAATATTA
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
94 6 0.07
95 79 0.93
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (94 bp):
AAATACCTTCATCAGACTAGCTGAATATTATCCATAAAGCCGGGGTGTTTAACCAATTGCCTTAG
AGGGACAACTCAAGCTTTATAGTATAGTA
Found at i:16797828 original size:13 final size:12
Alignment explanation
Indices: 16797779--16797892 Score: 56
Period size: 13 Copynumber: 8.8 Consensus size: 12
16797769 AATGAATGAT
16797779 AAATAAAGTAA-A
1 AAATAAA-TAATA
*
16797791 AAA-AAATGAATG
1 AAATAAAT-AATA
16797803 AAATAAATAA-A
1 AAATAAATAATA
16797814 TAAATAATAATAATA
1 -AAAT-A-AATAATA
*
16797829 AATATAAAAAATAA
1 AA-ATAAATAAT-A
16797843 AAATAAATGAATA
1 AAATAAAT-AATA
*
16797856 AAATGAATAA-A
1 AAATAAATAATA
16797867 ATAGATAAAGTAAATA
1 A-A-ATAAA-T-AATA
*
16797883 AAACAAATAA
1 AAATAAATAA
16797893 AATGAAAGAA
Statistics
Matches: 80, Mismatches: 7, Indels: 30
0.68 0.06 0.26
Matches are distributed among these distances:
10 1 0.01
11 7 0.09
12 17 0.21
13 28 0.35
14 19 0.24
15 6 0.08
16 2 0.03
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:16797841 original size:19 final size:19
Alignment explanation
Indices: 16797803--16797850 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
16797793 AAAATGAATG
*
16797803 AAATAAATAAATAAATAATAA
1 AAATAAAT--ATAAAAAATAA
*
16797824 TAATAAATATAAAAAATAA
1 AAATAAATATAAAAAATAA
16797843 AAATAAAT
1 AAATAAAT
16797851 GAATAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 17 0.71
21 7 0.29
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATAAATATAAAAAATAA
Found at i:16797874 original size:18 final size:18
Alignment explanation
Indices: 16797852--16797898 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
16797842 AAAATAAATG
*
16797852 AATAAAATGAATAAAATA
1 AATAAAATGAATAAAACA
* * *
16797870 GATAAAGTAAATAAAACA
1 AATAAAATGAATAAAACA
16797888 AATAAAATGAA
1 AATAAAATGAA
16797899 AGAAAAAGAG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (18 bp):
AATAAAATGAATAAAACA
Found at i:16797880 original size:5 final size:4
Alignment explanation
Indices: 16797777--16797884 Score: 68
Period size: 4 Copynumber: 27.2 Consensus size: 4
16797767 AAAATGAATG
*
16797777 ATAA ATAA AGTAA A-AA A-AA ATGA ATGAA ATAA ATAA ATAA AT-A AT-A
1 ATAA ATAA A-TAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA
* * * *
16797823 AT-A ATAA ATATA AAAA AT-A A-AA ATAA ATGA ATAAA ATGA ATAAA ATAG
1 ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA AT-AA ATAA AT-AA ATAA
16797871 ATAA AGTAA ATAA A
1 ATAA A-TAA ATAA A
16797885 ACAAATAAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 20
0.74 0.09 0.18
Matches are distributed among these distances:
3 19 0.23
4 45 0.54
5 20 0.24
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:16798008 original size:16 final size:17
Alignment explanation
Indices: 16797986--16798026 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
16797976 AAAGGAGATA
16797986 AAAATAAAAAACAAAAT
1 AAAATAAAAAACAAAAT
*
16798003 -AAAT-AAAAATAAAAT
1 AAAATAAAAAACAAAAT
16798018 AAAATAAAA
1 AAAATAAAA
16798027 TTAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 10 0.48
16 8 0.38
17 3 0.14
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAATAAAAAACAAAAT
Found at i:16798016 original size:5 final size:5
Alignment explanation
Indices: 16797993--16798048 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
16797983 ATAAAAATAA
*
16797993 AAAAC AAAAT -AAAT AAAAAT AAAAT AAAAT AAAATT AATAAT -AAAT
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAA-T AA-AAT AAAAT
16798039 -AAAT AAAAT A
1 AAAAT AAAAT A
16798049 GAAAAATATG
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
4 11 0.24
5 24 0.53
6 8 0.18
7 2 0.04
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:16798027 original size:25 final size:25
Alignment explanation
Indices: 16797993--16798069 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 25
16797983 ATAAAAATAA
*
16797993 AAAACAAAATAAATAA-AAATAAAAT
1 AAAATAAAATAAATAATAAAT-AAAT
*
16798018 AAAATAAAATTAATAATAAATAAAT
1 AAAATAAAATAAATAATAAATAAAT
*
16798043 AAAATAGAAA-AATATGATAAA-AAAT
1 AAAATA-AAATAA-ATAATAAATAAAT
16798068 AA
1 AA
16798070 TAATGATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
25 31 0.69
26 14 0.31
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (25 bp):
AAAATAAAATAAATAATAAATAAAT
Found at i:16798038 original size:16 final size:15
Alignment explanation
Indices: 16797987--16798041 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
16797977 AAGGAGATAA
*
16797987 AAATAAAAAACAAAAT
1 AAAT-AAAAATAAAAT
16798003 AAATAAAAATAAAAT
1 AAATAAAAATAAAAT
*
16798018 AAAATAAAATTAATAAT
1 -AAATAAAAATAA-AAT
16798035 AAATAAA
1 AAATAAA
16798042 TAAAATAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 10 0.29
16 22 0.63
17 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAAAAATAAAAT
Found at i:16798048 original size:16 final size:14
Alignment explanation
Indices: 16797991--16798072 Score: 60
Period size: 15 Copynumber: 5.6 Consensus size: 14
16797981 AGATAAAAAT
*
16797991 AAAAAACAAAATAA
1 AAAAAATAAAATAA
16798005 ATAAAAATAAAATAA
1 A-AAAAATAAAATAA
16798020 AATAAAATTAATAAT-A
1 AA-AAAA-TAA-AATAA
*
16798036 AATAAATAAAAT-A
1 AAAAAATAAAATAA
* **
16798049 GAAAAATATGATAA
1 AAAAAATAAAATAA
16798063 AAAATAATAA
1 AAAA-AATAA
16798073 TGATAATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
13 12 0.22
14 9 0.17
15 24 0.44
16 6 0.11
17 3 0.06
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAAAATAAAATAA
Found at i:16798115 original size:63 final size:56
Alignment explanation
Indices: 16797987--16798160 Score: 155
Period size: 57 Copynumber: 3.1 Consensus size: 56
16797977 AAGGAGATAA
* * *
16797987 AAATAAAAAACAAAATAAATAAAAATAAA-ATA-AAATAAAATT-AATA-A--TAAAT
1 AAATAAAAAA-GAAATATATAAAAAGAAATA-AGAAATAAAATTAAATATATGTAAAT
* *
16798039 AAATAAAATAGAAAAATATGATAAAAA-ATAATAATGATAATAAAATTGTAATATAATGTAAAT
1 AAATAAAA-A-AGAAATAT-ATAAAAAGA-AATAA-GA-AATAAAATT-AAATAT-ATGTAAAT
*
16798102 AAATAAAAAAGAAATATATAAAAAGAAATAAGAAATATAATTAAATATATGTAAAT
1 AAATAAAAAAGAAATATATAAAAAGAAATAAGAAATAAAATTAAATATATGTAAAT
16798158 AAA
1 AAA
16798161 GAATATAATA
Statistics
Matches: 103, Mismatches: 4, Indels: 26
0.77 0.03 0.20
Matches are distributed among these distances:
52 8 0.08
53 8 0.08
54 11 0.11
55 1 0.01
56 12 0.12
57 14 0.14
58 8 0.08
59 6 0.06
60 12 0.12
61 9 0.09
62 1 0.01
63 13 0.13
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.25
Consensus pattern (56 bp):
AAATAAAAAAGAAATATATAAAAAGAAATAAGAAATAAAATTAAATATATGTAAAT
Found at i:16798116 original size:15 final size:14
Alignment explanation
Indices: 16798098--16798132 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
16798088 AATATAATGT
16798098 AAATAAATAAAAAAG
1 AAATAAAT-AAAAAG
*
16798113 AAATATATAAAAAG
1 AAATAAATAAAAAG
16798127 AAATAA
1 AAATAA
16798133 GAAATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (14 bp):
AAATAAATAAAAAG
Found at i:16799452 original size:21 final size:21
Alignment explanation
Indices: 16799423--16799467 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
16799413 GATTTCTGGG
* *
16799423 CAAGAGGAATCGGTACCCATT
1 CAAGAGGAACCGATACCCATT
* *
16799444 CAAGGGGAACCGATACCCCTT
1 CAAGAGGAACCGATACCCATT
16799465 CAA
1 CAA
16799468 ACGAACAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CAAGAGGAACCGATACCCATT
Found at i:16801294 original size:101 final size:101
Alignment explanation
Indices: 16801152--16801360 Score: 341
Period size: 101 Copynumber: 2.1 Consensus size: 101
16801142 GGGTCTACGC
*
16801152 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* * *
16801217 CCTTGGCATATGTATATGATTCTTAAGGAAT-ATATGT
66 CCCTAG--TATATATATGATTCTTAAGGAATGATATGT
16801254 GGTCCTTCGGGACATATATATA-TCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
16801318 CCCTAGTATATATATGATTCTTAAGGAATGATATGT
66 CCCTAGTATATATATGATTCTTAAGGAATGATATGT
*
16801354 AGTCCTT
1 GGTCCTT
16801361 ATGGATATTA
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
99 22 0.22
100 12 0.12
101 46 0.46
102 21 0.21
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (101 bp):
GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGTATATATATGATTCTTAAGGAATGATATGT
Found at i:16801412 original size:23 final size:23
Alignment explanation
Indices: 16801386--16801439 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
16801376 TGGCACTACA
16801386 GTGCAATTCTACGCGACACTCCG
1 GTGCAATTCTACGCGACACTCCG
* * *
16801409 GTGCAATTCTACGTGGCACTTCG
1 GTGCAATTCTACGCGACACTCCG
16801432 GTGCAATT
1 GTGCAATT
16801440 ATAGGAGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (23 bp):
GTGCAATTCTACGCGACACTCCG
Found at i:16804472 original size:21 final size:21
Alignment explanation
Indices: 16804439--16804479 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16804429 TTCTGGGCAA
* *
16804439 GGGAATCGGTACCCATTCAAG
1 GGGAACCGATACCCATTCAAG
*
16804460 GGGAACCGATACCCCTTCAA
1 GGGAACCGATACCCATTCAA
16804480 ACGAACAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.17
Consensus pattern (21 bp):
GGGAACCGATACCCATTCAAG
Found at i:16806315 original size:103 final size:103
Alignment explanation
Indices: 16806131--16806343 Score: 363
Period size: 103 Copynumber: 2.1 Consensus size: 103
16806121 GGGTCTACGC
*
16806131 GGTCCTTCGGGACATATATGTATTCTTTGGAACAAGTGTGAAGTATGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACAAGTGTGAAGTATGGTGAGACACATACTTGAT
* * *
16806196 CCTTGGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGTATATATATATGATTCTTAAGGAATGATATGT
* *
16806234 GGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATATATTCTTTGGAACAAGTGTGAAGTATGGTGAGACACATACTTGAT
16806299 CCCTAGTATATATATATGATTCTTAAGGAATGATATGT
66 CCCTAGTATATATATATGATTCTTAAGGAATGATATGT
*
16806337 AGTCCTT
1 GGTCCTT
16806344 ATTGACATTA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATATATTCTTTGGAACAAGTGTGAAGTATGGTGAGACACATACTTGAT
CCCTAGTATATATATATGATTCTTAAGGAATGATATGT
Found at i:16806393 original size:23 final size:23
Alignment explanation
Indices: 16806360--16806427 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
16806350 ATTATTATAT
16806360 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* **
16806383 GGCACTCCGGTGCAATTCTACAT
1 GGCACTACGGTGCAATTCTACGC
* *
16806406 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
16806428 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:16806475 original size:16 final size:17
Alignment explanation
Indices: 16806456--16806489 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16806446 GTGCACAACC
16806456 TCTATAG-ACTCACATA
1 TCTATAGTACTCACATA
*
16806472 TCTATAGTTCTCACATA
1 TCTATAGTACTCACATA
16806489 T
1 T
16806490 GTAAATGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (17 bp):
TCTATAGTACTCACATA
Found at i:16807638 original size:17 final size:17
Alignment explanation
Indices: 16807610--16807651 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
16807600 TAATAAAATA
*
16807610 ATAATA-ATATATATGT
1 ATAATATATATATATAT
*
16807626 GTAATATATATATATAT
1 ATAATATATATATATAT
16807643 ATAATATAT
1 ATAATATAT
16807652 GTTTATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
ATAATATATATATATAT
Found at i:16809336 original size:14 final size:14
Alignment explanation
Indices: 16809312--16809346 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
16809302 GTTATATAAA
*
16809312 ATATATTTATATTT
1 ATATTTTTATATTT
*
16809326 GTATTTTTATATTT
1 ATATTTTTATATTT
16809340 ATATTTT
1 ATATTTT
16809347 ATTATAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
ATATTTTTATATTT
Found at i:16809819 original size:24 final size:25
Alignment explanation
Indices: 16809765--16809820 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
16809755 GATTATCACT
16809765 TTATTATTTAAGATTTTATTATTTGA
1 TTATT-TTTAAGATTTTATTATTTGA
* *
16809791 ATATTTTTAGGATTTTA-TATTT-A
1 TTATTTTTAAGATTTTATTATTTGA
16809814 GTTATTT
1 -TTATTT
16809821 CATTTTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 10 0.38
25 11 0.42
26 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (25 bp):
TTATTTTTAAGATTTTATTATTTGA
Found at i:16814464 original size:145 final size:146
Alignment explanation
Indices: 16814297--16814567 Score: 463
Period size: 145 Copynumber: 1.9 Consensus size: 146
16814287 CCACCTATAA
* *
16814297 AAAGAAACAAAGCTGCCAACTTTTCTTGGCAATCATTCCATTTTTTATATTTCAAGGTAAGGAAT
1 AAAGAAACAAAGCTGCCAACTTTGCTTGGCAATCATTCCATTTTTTAGATTTCAAGGTAAGGAAT
* * *
16814362 AAAACCTCCAT-TTTTAAGCTTTCATTCAAGCCCTCTCTTAGAAGGTTGGATCATGGTATCCAAA
66 AAAACCTCCATCTTCTAAGCTTTCATTCAAGCCCTCTCTTAGAAGATTGGATCATAGTATCCAAA
16814426 ATGTGAGTTTAGTCAC
131 ATGTGAGTTTAGTCAC
16814442 AAAGAAACAAAGCTGCCAACTTTGCTTGGCAATCATTCCATTTTTTAGATTTCAAGGTAAGGAAT
1 AAAGAAACAAAGCTGCCAACTTTGCTTGGCAATCATTCCATTTTTTAGATTTCAAGGTAAGGAAT
* * *
16814507 AAAACCTCCGTCTTCTAAGCTTTCATTCAAGCCCTCTCTTGGAAGATTTGATCATAGTATC
66 AAAACCTCCATCTTCTAAGCTTTCATTCAAGCCCTCTCTTAGAAGATTGGATCATAGTATC
16814568 TTTCAGCCTT
Statistics
Matches: 117, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
145 73 0.62
146 44 0.38
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (146 bp):
AAAGAAACAAAGCTGCCAACTTTGCTTGGCAATCATTCCATTTTTTAGATTTCAAGGTAAGGAAT
AAAACCTCCATCTTCTAAGCTTTCATTCAAGCCCTCTCTTAGAAGATTGGATCATAGTATCCAAA
ATGTGAGTTTAGTCAC
Found at i:16814750 original size:20 final size:18
Alignment explanation
Indices: 16814699--16814741 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
16814689 TCAAGTAAGG
16814699 AAAGTTAGAGAAAGCTCC
1 AAAGTTAGAGAAAGCTCC
16814717 AAAGTTAGAGAAAGCTCC
1 AAAGTTAGAGAAAGCTCC
16814735 AAAGTTA
1 AAAGTTA
16814742 AAGAGAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (18 bp):
AAAGTTAGAGAAAGCTCC
Found at i:16815702 original size:181 final size:179
Alignment explanation
Indices: 16815216--16815743 Score: 505
Period size: 181 Copynumber: 2.9 Consensus size: 179
16815206 AATTAAAGGT
* * * * * * * *
16815216 ATATAGTGACAACTTTTGTAACTA-AAAGTTTTACTAACTATGACAGAAAAAATTATCACAATAA
1 ATATAGTGACAAATTTTGTAACTATAAA-TGTTAATAATTATTACAAAAAAAATTGTCACAAAAA
* * * *
16815280 ATAATGAGATTTAGATTTGTTGTGACAAATTTTGTTTGTAATTATATATTTTAATTATAGTGACA
65 ATAATGAGATTCA-ATTT-TTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGATA
* *
16815345 AAATGTATAGTCACAAATGA-TTATCTCCAATTTTTTGTACAAAAACAAAATC
128 AAATATATTGTCACAAA-GATTTATCTCCAATTTTTTGTACAAAAACAAAATC
* ** * * *
16815397 ATATAGTGATATGTTTTGTAACTAT-AA-GCTATAATTATTATTACAAAAAAAATTGTTACAACA
1 ATATAGTGACAAATTTTGTAACTATAAATG-T-TAATAATTATTACAAAAAAAATTGTCACAAAA
* * * ** * *
16815460 AATAATGAGATTCTAGTTTTTAG-CAAAAAACAGTGTTTGTCGTTAT-TGTTTTAATTATAGTGA
64 AATAATGAGATTC-AATTTTT-GTGACAAATTA-TGTTTGTAGTTATATATTTTAATTATAGTGA
* *
16815523 TAAAATATATTGTCACAAAGATTTCTCTCCATATTTTTT-TACTCAAAAAC-AAGTC
126 TAAAATATATTGTCACAAAGATTTATCTCCA-ATTTTTTGTA--CAAAAACAAAATC
* *
16815578 ATATGGTGACAAATTTTGTAACTATAAATGTTAATAATTATTACAAAAAAAATTGTCATAAAAAA
1 ATATAGTGACAAATTTTGTAACTATAAATGTTAATAATTATTACAAAAAAAATTGTCACAAAAAA
* * * * * **
16815643 TAATTATATTCACATTTTTGTGACAAATTATATTTGTAGTTATAAATTTTAACTATAGTGATAGC
66 TAATGAGATTCA-ATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGATAAA
* * * *
16815708 ATATATTGTCATAAATATTTTTCTCCACTTTTTTGT
130 ATATATTGTCACAAAGATTTATCTCCAATTTTTTGT
16815744 TTCAAAAGTT
Statistics
Matches: 278, Mismatches: 53, Indels: 32
0.77 0.15 0.09
Matches are distributed among these distances:
179 2 0.01
180 68 0.24
181 196 0.71
182 11 0.04
183 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (179 bp):
ATATAGTGACAAATTTTGTAACTATAAATGTTAATAATTATTACAAAAAAAATTGTCACAAAAAA
TAATGAGATTCAATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGATAAAA
TATATTGTCACAAAGATTTATCTCCAATTTTTTGTACAAAAACAAAATC
Found at i:16816663 original size:17 final size:17
Alignment explanation
Indices: 16816635--16816675 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
16816625 ACTTTTTTCT
*
16816635 TAATTATAATTATGTAAA
1 TAATT-TAATTAGGTAAA
16816653 TAATTTAATTAGGTAAA
1 TAATTTAATTAGGTAAA
*
16816670 GAATTT
1 TAATTT
16816676 GAATAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (17 bp):
TAATTTAATTAGGTAAA
Found at i:16818636 original size:65 final size:65
Alignment explanation
Indices: 16818567--16818689 Score: 169
Period size: 65 Copynumber: 1.9 Consensus size: 65
16818557 TTTTGTCAAA
*
16818567 ATAAAAAATTGTGACAAAT-TTATTTAATCAAAATAAC-AATCTATAACAAATATTATTTTCTCA
1 ATAAAAAATTGTGACAAATAATATTTAATCAAAATAACAAAT-TATAACAAA-ATTATTTTCTCA
16818630 TT
64 TT
** * *
16818632 ATAAAAAATTGTGACAAATAATATTTTTTCACAATAACAAATTGTAACAAAATTATTT
1 ATAAAAAATTGTGACAAATAATATTTAATCAAAATAACAAATTATAACAAAATTATTT
16818690 AGTCACAGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
65 26 0.51
66 22 0.43
67 3 0.06
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (65 bp):
ATAAAAAATTGTGACAAATAATATTTAATCAAAATAACAAATTATAACAAAATTATTTTCTCATT
Found at i:16818649 original size:33 final size:33
Alignment explanation
Indices: 16818555--16818689 Score: 123
Period size: 33 Copynumber: 4.2 Consensus size: 33
16818545 TAATTTTCAA
* *
16818555 TATTTTGTCAAAATAAAAAATTGTGACAAAT-T
1 TATTTTATCAAAATAAAAAATTGTAACAAATAT
* * *
16818587 TATTTAATCAAAAT-AACAATCTATAACAAATAT
1 TATTTTATCAAAATAAAAAAT-TGTAACAAATAT
* ** * *
16818620 TATTTTCTCATTATAAAAAATTGTGACAAATAA
1 TATTTTATCAAAATAAAAAATTGTAACAAATAT
* * *
16818653 TATTTTTTCACAATAACAAATTGTAACAAA-AT
1 TATTTTATCAAAATAAAAAATTGTAACAAATAT
16818685 TATTT
1 TATTT
16818690 AGTCACAGTA
Statistics
Matches: 81, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
31 5 0.06
32 26 0.32
33 45 0.56
34 5 0.06
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.39
Consensus pattern (33 bp):
TATTTTATCAAAATAAAAAATTGTAACAAATAT
Found at i:16838789 original size:42 final size:42
Alignment explanation
Indices: 16838676--16838836 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
16838666 TATAATGAAC
* *
16838676 ACGCCGCAATAGAGTAGA-CATTTAGCGGCGTTTCAT-CCA-AA
1 ACGCCGCAATAGAGT-GATAAATTAGCGGCGTTT-ATACCACAA
* * * * *
16838717 ACGCTGCAATATAGTGTTAATTTAGCGGCGTTTATACCATAA
1 ACGCCGCAATAGAGTGATAAATTAGCGGCGTTTATACCACAA
* * * *
16838759 ACGCCGTAATAGATTTG-TAAATTAGTGGCGTTTATACGACAA
1 ACGCCGCAATAGA-GTGATAAATTAGCGGCGTTTATACCACAA
*
16838801 ACGCCGCAATAGAGTGATAAATTAACGGCGTTTATA
1 ACGCCGCAATAGAGTGATAAATTAGCGGCGTTTATA
16838837 TCTAAAACAC
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
40 3 0.03
41 32 0.32
42 62 0.63
43 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (42 bp):
ACGCCGCAATAGAGTGATAAATTAGCGGCGTTTATACCACAA
Found at i:16840721 original size:16 final size:16
Alignment explanation
Indices: 16840700--16840730 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16840690 GCCACAGTAG
16840700 GTTTCATCAATAGTGT
1 GTTTCATCAATAGTGT
16840716 GTTTCATCAATAGTG
1 GTTTCATCAATAGTG
16840731 GCGTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (16 bp):
GTTTCATCAATAGTGT
Found at i:16843381 original size:18 final size:17
Alignment explanation
Indices: 16843353--16843389 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
16843343 AGTGGTATAA
16843353 TTTGTTTGTTGTCTTAT
1 TTTGTTTGTTGTCTTAT
16843370 TTTGTATTGTTGTCTTAT
1 TTTGT-TTGTTGTCTTAT
16843388 TT
1 TT
16843390 CATTTTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.08, C:0.05, G:0.16, T:0.70
Consensus pattern (17 bp):
TTTGTTTGTTGTCTTAT
Found at i:16849303 original size:21 final size:20
Alignment explanation
Indices: 16849279--16849357 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 20
16849269 TGAAGTAAGG
*
16849279 GAAGCAGAGAGAGTAGCAGC
1 GAAGCAGAGAGAGAAGCAGC
** *
16849299 AGAAGCAGCCAGAGCAGCAGC
1 -GAAGCAGAGAGAGAAGCAGC
*
16849320 GAAAGCAGAGAAAGAAGCAGC
1 G-AAGCAGAGAGAGAAGCAGC
* *
16849341 GGCAGCACAGAGAGAAG
1 -GAAGCAGAGAGAGAAG
16849358 TAGCATATCA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
20 1 0.02
21 44 0.96
22 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.37, T:0.01
Consensus pattern (20 bp):
GAAGCAGAGAGAGAAGCAGC
Found at i:16849916 original size:43 final size:43
Alignment explanation
Indices: 16849867--16849980 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
16849857 GTATTTATGG
*
16849867 GAAAAATGCCACAAAATATCAACACCTACTGA-GGCGTTCGTAA
1 GAAAAATGCCGCAAAATATCAACACCTACT-ACGGCGTTCGTAA
* * *
16849910 GTAAAATGCCGCTAAAATA-CAACACCTACTACGGCGTTTGTAG
1 GAAAAATGCCGC-AAAATATCAACACCTACTACGGCGTTCGTAA
* * *
16849953 GAAAAACGCCGCTAAACATCAACACCTA
1 GAAAAATGCCGCAAAATATCAACACCTA
16849981 TTGCGGCATT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 5 0.08
43 49 0.82
44 6 0.10
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.18
Consensus pattern (43 bp):
GAAAAATGCCGCAAAATATCAACACCTACTACGGCGTTCGTAA
Found at i:16853784 original size:28 final size:28
Alignment explanation
Indices: 16853752--16853847 Score: 86
Period size: 28 Copynumber: 3.3 Consensus size: 28
16853742 AGGAAATCAT
16853752 ACTGAGTGTATGAATTTCTATATGGAGC
1 ACTGAGTGTATGAATTTCTATATGGAGC
* * ** * * *
16853780 ACTGAGTGTGTTAAAAT-GATAAGGAAATC
1 ACTGAGTGTATGAATTTCTATATGG--AGC
16853809 ATACTGAGTGTATGAATTTCTATATGGAGC
1 --ACTGAGTGTATGAATTTCTATATGGAGC
16853839 ACTGAGTGT
1 ACTGAGTGT
16853848 GCTAAAGTGA
Statistics
Matches: 49, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
27 5 0.10
28 22 0.45
29 2 0.04
30 2 0.04
31 13 0.27
32 5 0.10
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.33
Consensus pattern (28 bp):
ACTGAGTGTATGAATTTCTATATGGAGC
Found at i:16853798 original size:59 final size:59
Alignment explanation
Indices: 16853730--16854282 Score: 665
Period size: 59 Copynumber: 9.4 Consensus size: 59
16853720 CACTATATGC
*
16853730 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
* *
16853789 GTTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
*
16853848 GCTAAAGTGATAAGGAAATCATACTGAGTGTATGAA-TTCCATATGGAGCACTGAGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
* * *
16853906 GCTAAAGTGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCATTGAGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
16853965 GCTAAAATGAT-AGGAAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
1 GCTAAAATGATAAGG-AAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
* * * * * * * *
16854024 GCTAAAGTGATAAGGAAATCATATTGAATATATGGATTTCCAGATAGG-GCA-TTATATGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATAT-GGAGCACTGA-GTGT
* *
16854083 GCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGAGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
* * * * * * * *
16854142 GCTAAAGTGATCAGGAAATCATATTGAATATATGGATTTCCATATAGG-GCA-TTATATGT
1 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATAT-GGAGCACTGA-GTGT
* * * * **
16854201 GCTAAAATGGTAAGGGAATCATACT-AATGGTATGGATTCTCGCATA-GG-GCACTTCGTGT
1 GCTAAAATGATAAGGAAATCATACTGAGT-GTATGAATT-TC-CATATGGAGCACTGAGTGT
* **
16854260 GCTAAAATAAGGAGGAAATCATA
1 GCTAAAATGATAAGGAAATCATA
16854283 TTAAGTATTT
Statistics
Matches: 435, Mismatches: 46, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
58 69 0.16
59 349 0.80
60 13 0.03
61 4 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (59 bp):
GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGT
Found at i:16854031 original size:176 final size:177
Alignment explanation
Indices: 16853724--16854225 Score: 683
Period size: 176 Copynumber: 2.8 Consensus size: 177
16853714 AAATGACACT
*
16853724 ATATGCGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
1 ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
* *
16853789 GTTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGTGCTAAA
66 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGTGCTAAA
* * *
16853854 GTGATAAGGAAATCATACTGAGTGTAT-GAATTCCATAT-GGAGCACTG
131 GTGATAAGGAAATCATACTGAATATATGGAATTCCAGATAGG-GCA-TG
* * *
16853901 A-GTGTGCTAAAGTGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCATTGAGTGT
1 ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
16853965 GCTAAAATGAT-AGGAAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGTGCTAA
66 GCTAAAATGATAAGG-AAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGTGCTAA
* * *
16854029 AGTGATAAGGAAATCATATTGAATATATGGATTTCCAGATAGGGCATT
130 AGTGATAAGGAAATCATACTGAATATATGGAATTCCAGATAGGGCATG
* * *
16854077 ATATGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCATATGGAGCACTGAGTGT
1 ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
* * * * * * * *
16854142 GCTAAAGTGATCAGGAAATCATATTGAATATATGGATTTCCATATAGG-GCA-TTATATGTGCTA
66 GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATAT-GGAGCACTGA-GTGTGCTA
* * *
16854205 AAATGGTAAGGGAATCATACT
129 AAGTGATAAGGAAATCATACT
16854226 AATGGTATGG
Statistics
Matches: 289, Mismatches: 29, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
175 3 0.01
176 146 0.51
177 133 0.46
178 7 0.02
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (177 bp):
ATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCACTGAGTGT
GCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAGTGTGCTAAA
GTGATAAGGAAATCATACTGAATATATGGAATTCCAGATAGGGCATG
Found at i:16854454 original size:44 final size:43
Alignment explanation
Indices: 16854391--16854587 Score: 232
Period size: 44 Copynumber: 4.4 Consensus size: 43
16854381 GACGTAAATC
*
16854391 ATAGTAAGTATATTGATAACATAAGCTTACGAGCTTATGAACTT
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGAA-TT
* * *
16854435 ATAGTAAGTAGATTGATAACATAAGTTTACGAGCTTATGAAATT
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATG-AATT
* * *
16854479 ATAGTAAGTATATTGGTAAAATAAGCTTACAAGCTTATAGAATA
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTAT-GAATT
* * *
16854523 ATGGTAAGTATATTGGTAAAAATAAGCTTACGAGCTTATGGATT
1 ATAGTAAGTATATTGAT-AAAATAAGCTTACGAGCTTATGAATT
* *
16854567 AAATGGTATGTATATTGATAA
1 --ATAGTAAGTATATTGATAA
16854588 GAAATTTCAT
Statistics
Matches: 134, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
44 94 0.70
45 25 0.19
46 15 0.11
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (43 bp):
ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGAATT
Found at i:16859782 original size:51 final size:51
Alignment explanation
Indices: 16859735--16860048 Score: 259
Period size: 59 Copynumber: 5.5 Consensus size: 51
16859725 TGGCACTATA
*
16859735 TGTGCCAAAATGATAAGGAAATCATATTGAGTGTATGAATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGAATGGAGCACTGAG
*
16859786 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATG-------A-ATGGAGCACTGAG
*
16859845 TGTGCTAAAGTGATAAGGAAATCATATTGAGTGTATGAATTTCCATATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATG-------A-ATGGAGCACTGAG
* * *
16859904 TGTGCTAAAGTGATAAGGAAATCATACTGAGTGTATGAATTTCTATATGGAGCATTGAG
1 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATG-------A-ATGGAGCACTGAG
* *
16859963 TGTGCTAAAATGATAAGAAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATG-------A-ATGGAGCACTGAG
*
16860022 TGTGCTAAAGTGATAAGGAAATCATAT
1 TGTGCTAAAATGATAAGGAAATCATAT
16860049 GGATGGATTT
Statistics
Matches: 241, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
51 35 0.15
58 1 0.00
59 205 0.85
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (51 bp):
TGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGAATGGAGCACTGAG
Found at i:16859865 original size:59 final size:59
Alignment explanation
Indices: 16859773--16860374 Score: 534
Period size: 59 Copynumber: 10.7 Consensus size: 59
16859763 GAGTGTATGA
*
16859773 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * *
16859832 ATGGAGCACTGAGTGTGCTAAAGTGATAAGGAAATCATATTGAGTGTATGAATTTCCAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * *
16859891 ATGGAGCACTGAGTGTGCTAAAGTGATAAGGAAATCATACTGAGTGTATGAATTTCTAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * *
16859950 ATGGAGCATTGAGTGTGCTAAAATGATAAGAAAATCATACTGAGTGTATGAATTTCCAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* *
16860009 ATGGAGCACTGAGTGTGCTAAAGTGATAAGGAAATCATA-T--G-G-ATGGATTTTCAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* *
16860063 AT-G-G-A-T---TGTGCT-AAA-GATAAGGAAATCAT--T-AATATATGGATTT-C-T
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * *
16860108 A---A--A---A-TGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATGGATTTTCAT
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * * * * *
16860158 ATGGAGCACCGAGTGTGCTAAAGTGATAAGGAAATCATATTGAATATATGGATTTCCAG
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
* * * * *
16860217 ATAGG-GCA-TTATATGTGCTAAAATGGTAAGGGAATCATACT-AATGGTATGGATTCTCGCAT
1 AT-GGAGCACTGA-GTGTGCTAAAATGATAAGGAAATCATACTGAGT-GTATGGATT-TC-CAT
** ** * * * *
16860278 A-GG-GCACTTCGTGTGCTAAAATGAGGAGGAAATCATATTAAGTATAT-GATATTCCAG
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGAT-TTCCAT
* * * * * *
16860335 ATAGAGCATTGAGAGTGCTAATATTATAAGGAAATTATAC
1 ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATAC
16860375 GAATTGGACA
Statistics
Matches: 455, Mismatches: 57, Indels: 62
0.79 0.10 0.11
Matches are distributed among these distances:
43 7 0.02
44 4 0.01
45 29 0.06
46 3 0.01
47 15 0.03
48 11 0.02
49 1 0.00
50 3 0.01
51 1 0.00
52 1 0.00
53 2 0.00
54 12 0.03
55 2 0.00
56 1 0.00
57 3 0.01
58 12 0.03
59 337 0.74
60 8 0.02
61 3 0.01
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (59 bp):
ATGGAGCACTGAGTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAT
Found at i:16859936 original size:31 final size:31
Alignment explanation
Indices: 16859780--16859937 Score: 84
Period size: 31 Copynumber: 5.3 Consensus size: 31
16859770 TGAATGGAGC
*
16859780 ACTGAGTGTGCTAAAATGATAAGGAAATCAT
1 ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
* ** * * *
16859811 ACTGAGTGT-ATGAATTTCCATATGG--AGC--
1 ACTGAGTGTGCT-AAAGT-GATAAGGAAATCAT
16859839 ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
1 ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
* * ** * * *
16859870 ATTGAGTGT-ATGAATTTCCATATGG--AGC--
1 ACTGAGTGTGCT-AAAGT-GATAAGGAAATCAT
16859898 ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
1 ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
16859929 ACTGAGTGT
1 ACTGAGTGT
16859938 ATGAATTTCT
Statistics
Matches: 87, Mismatches: 26, Indels: 28
0.62 0.18 0.20
Matches are distributed among these distances:
27 10 0.11
28 23 0.26
29 6 0.07
30 6 0.07
31 32 0.37
32 10 0.11
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (31 bp):
ACTGAGTGTGCTAAAGTGATAAGGAAATCAT
Found at i:16860519 original size:44 final size:43
Alignment explanation
Indices: 16860456--16860652 Score: 241
Period size: 44 Copynumber: 4.4 Consensus size: 43
16860446 GACGTAAATC
*
16860456 ATAGTAAGTATATTGATAACATAAGCTTACGAGCTTATGAACTT
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGAA-TT
* * *
16860500 ATAGTAAGTAGATTGATAACATAAGTTTACGAGCTTATGAAATT
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATG-AATT
* *
16860544 ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATG
1 ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTAT-GAATT
* * *
16860588 ATGGTAAGTATATTGGTAAAAATAAGCTTACGAGCTTATGGATT
1 ATAGTAAGTATATTGAT-AAAATAAGCTTACGAGCTTATGAATT
* *
16860632 AAATGGTATGTATATTGATAA
1 --ATAGTAAGTATATTGATAA
16860653 GAAATTTCAT
Statistics
Matches: 136, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
44 95 0.70
45 26 0.19
46 15 0.11
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (43 bp):
ATAGTAAGTATATTGATAAAATAAGCTTACGAGCTTATGAATT
Found at i:16864614 original size:2 final size:2
Alignment explanation
Indices: 16864607--16864640 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
16864597 AGTTTCAATA
16864607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16864641 CAAACTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16864772 original size:57 final size:57
Alignment explanation
Indices: 16864707--16864824 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
16864697 AGTCACTTTG
16864707 ATGTGATGAGTTTGTTAAACACTATAACAAATACTGTAGATCCCAACTTAAAAATTC
1 ATGTGATGAGTTTGTTAAACACTATAACAAATACTGTAGATCCCAACTTAAAAATTC
16864764 ATGTGATGAGTTTGTTAAACACTATAACAAATACTGTAGATCCCAACTTAAAAATTC
1 ATGTGATGAGTTTGTTAAACACTATAACAAATACTGTAGATCCCAACTTAAAAATTC
16864821 ATGT
1 ATGT
16864825 CTAGGTGGTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (57 bp):
ATGTGATGAGTTTGTTAAACACTATAACAAATACTGTAGATCCCAACTTAAAAATTC
Found at i:16865663 original size:20 final size:19
Alignment explanation
Indices: 16865630--16865673 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
16865620 AATAATTTTA
*
16865630 TTAATTAATGTTTTGATCAT
1 TTAATTAATATTTTGAT-AT
* *
16865650 TTAATTATTATTTTTATAT
1 TTAATTAATATTTTGATAT
16865669 TTAAT
1 TTAAT
16865674 ATAAAGTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (19 bp):
TTAATTAATATTTTGATAT
Found at i:16869054 original size:20 final size:20
Alignment explanation
Indices: 16868985--16869118 Score: 70
Period size: 20 Copynumber: 6.9 Consensus size: 20
16868975 CTCGATTTCG
*
16868985 AATTCGCAACACGAACTCTG-
1 AATTCGCAACACGAA-TTTGA
* * *
16869005 ATTTCGTAACAC-AATTTCTA
1 AATTCGCAACACGAATTT-GA
**
16869025 AATTTACAACACGAATTTGA
1 AATTCGCAACACGAATTTGA
*
16869045 AATTCGCAACACAGAAGTT-A
1 AATTCGCAACAC-GAATTTGA
*
16869065 AATTCGCAA-A-G----TCA
1 AATTCGCAACACGAATTTGA
*
16869079 AATTCGCAACTCGAATTTGA
1 AATTCGCAACACGAATTTGA
*
16869099 CAATTTCGCAACACAAATTT
1 -AA-TTCGCAACACGAATTT
16869119 CTTTTTTGCA
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
13 1 0.01
14 10 0.12
16 1 0.01
17 1 0.01
18 2 0.02
19 3 0.04
20 41 0.48
21 12 0.14
22 14 0.16
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.28
Consensus pattern (20 bp):
AATTCGCAACACGAATTTGA
Found at i:16869422 original size:16 final size:15
Alignment explanation
Indices: 16869387--16869425 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
16869377 TCCCATTCTC
*
16869387 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
16869402 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
16869418 TAATTTTT
1 TAATTTTT
16869426 CAATGATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:16870038 original size:12 final size:12
Alignment explanation
Indices: 16870017--16870050 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
16870007 ACCACATTTC
*
16870017 CAATACCAAACA
1 CAATATCAAACA
16870029 CAATATCAAACA
1 CAATATCAAACA
*
16870041 CAATCTCAAA
1 CAATATCAAA
16870051 ATCCACAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:16870203 original size:24 final size:24
Alignment explanation
Indices: 16870176--16870229 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
16870166 GTATTCGATA
16870176 TTTGATCTTGGTCAATACCCAGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
16870200 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
16870224 TTTGAT
1 TTTGAT
16870230 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:16872428 original size:14 final size:14
Alignment explanation
Indices: 16872409--16872440 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
16872399 CGCAAATTCG
16872409 CAACACGAAAATCA
1 CAACACGAAAATCA
*
16872423 CAACACGAAAATCG
1 CAACACGAAAATCA
16872437 CAAC
1 CAAC
16872441 TCGATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.31, G:0.09, T:0.06
Consensus pattern (14 bp):
CAACACGAAAATCA
Found at i:16872461 original size:20 final size:20
Alignment explanation
Indices: 16872430--16872488 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
16872420 TCACAACACG
* *
16872430 AAAA-TCGCAACTCGATATT
1 AAAATTCGCAACTCGAAAAT
*
16872449 AAAATTTGCAACTCGAAAAT
1 AAAATTCGCAACTCGAAAAT
*
16872469 ATAATTCGCAACTCGAAAAT
1 AAAATTCGCAACTCGAAAAT
16872489 CCTCCAAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 4 0.12
20 30 0.88
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.25
Consensus pattern (20 bp):
AAAATTCGCAACTCGAAAAT
Found at i:16873659 original size:22 final size:22
Alignment explanation
Indices: 16873603--16873647 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
16873593 GTCGTTGAAT
*
16873603 ATGGGGACGGATGTCGCCGGAG
1 ATGGGGATGGATGTCGCCGGAG
16873625 ATGGGGATGGATGTCGCCGGAG
1 ATGGGGATGGATGTCGCCGGAG
16873647 A
1 A
16873648 GAGTGAGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.16, G:0.49, T:0.16
Consensus pattern (22 bp):
ATGGGGATGGATGTCGCCGGAG
Found at i:16873819 original size:40 final size:40
Alignment explanation
Indices: 16873773--16873939 Score: 108
Period size: 40 Copynumber: 4.2 Consensus size: 40
16873763 TTTAATTTTC
* *
16873773 TTGCGAATTCAAAAATCTTGTTGCGAAAATAAAATTCGCG
1 TTGCGAATTTAAAAATCTTGTTACGAAAATAAAATTCGCG
* ** * ** * * *
16873813 TTGCGAATTTGAAACGCGCT-TTACGAATTTGAAATGCGCT
1 TTGCGAATTTAAAAATC-TTGTTACGAAAATAAAATTCGCG
* * **
16873853 TTGCGAA-TTAGAAAATCTTGTTGCGAAAATGAAACTT-GTA
1 TTGCGAATTTA-AAAATCTTGTTACGAAAAT-AAAATTCGCG
** *
16873893 TTGCGAATTTAAAAATCGAGTTACGAAAA-AGAAATTCGTG
1 TTGCGAATTTAAAAATCTTGTTACGAAAATA-AAATTCGCG
16873933 TTGCGAA
1 TTGCGAA
16873940 ATTGTCAAAT
Statistics
Matches: 92, Mismatches: 28, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
38 1 0.01
39 7 0.08
40 77 0.84
41 7 0.08
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCGAATTTAAAAATCTTGTTACGAAAATAAAATTCGCG
Found at i:16873841 original size:20 final size:20
Alignment explanation
Indices: 16873816--16873866 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
16873806 ATTCGCGTTG
16873816 CGAATTTGAAACGCGCTTTA
1 CGAATTTGAAACGCGCTTTA
* *
16873836 CGAATTTGAAATGCGCTTTG
1 CGAATTTGAAACGCGCTTTA
*
16873856 CGAATTAGAAA
1 CGAATTTGAAA
16873867 ATCTTGTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (20 bp):
CGAATTTGAAACGCGCTTTA
Found at i:16873939 original size:80 final size:80
Alignment explanation
Indices: 16873773--16873927 Score: 179
Period size: 80 Copynumber: 1.9 Consensus size: 80
16873763 TTTAATTTTC
* * * **
16873773 TTGCGAATTCAAAAATCTTGTTGCGAAAATAAAATTCGCGTTGCGAATTTGAAACGCGCTTTACG
1 TTGCGAATTCAAAAATCTTGTTGCGAAAATAAAATTCGCATTGCGAATTTAAAAAGCGAGTTACG
***
16873838 AATTTGAAATGCGCT
66 AAAAAGAAATGCGCT
* * *
16873853 TTGCGAATT-AGAAAATCTTGTTGCGAAAATGAAACTT-GTATTGCGAATTTAAAAATCGAGTTA
1 TTGCGAATTCA-AAAATCTTGTTGCGAAAAT-AAAATTCGCATTGCGAATTTAAAAAGCGAGTTA
16873916 CGAAAAAGAAAT
64 CGAAAAAGAAAT
16873928 TCGTGTTGCG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.02
80 56 0.90
81 5 0.08
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (80 bp):
TTGCGAATTCAAAAATCTTGTTGCGAAAATAAAATTCGCATTGCGAATTTAAAAAGCGAGTTACG
AAAAAGAAATGCGCT
Found at i:16873976 original size:21 final size:21
Alignment explanation
Indices: 16873924--16874028 Score: 133
Period size: 21 Copynumber: 4.9 Consensus size: 21
16873914 TACGAAAAAG
*
16873924 AAATTC-GTGTTGCGAAATTGTC
1 AAATTCTGTGTTGCG-AATT-CC
16873946 AAATTC-GTGTTGCGAATTCC
1 AAATTCTGTGTTGCGAATTCC
*
16873966 AAATTCTGTGTTGCGAATTCT
1 AAATTCTGTGTTGCGAATTCC
16873987 AAATTCTGTGTTGCGAATTCC
1 AAATTCTGTGTTGCGAATTCC
*
16874008 AAATTCTTCATGTTGCGAATT
1 AAATTC-T-GTGTTGCGAATT
16874029 TGGAAATTGT
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
20 7 0.09
21 43 0.57
22 15 0.20
23 11 0.14
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (21 bp):
AAATTCTGTGTTGCGAATTCC
Found at i:16873998 original size:42 final size:42
Alignment explanation
Indices: 16873924--16874046 Score: 146
Period size: 42 Copynumber: 2.9 Consensus size: 42
16873914 TACGAAAAAG
*
16873924 AAATTC-GTGTTGCGAAATTGTCAAATTCGTGTTGCGAATTCC
1 AAATTCTGTGTTGCG-AATTCTCAAATTCGTGTTGCGAATTCC
16873966 AAATTCTGTGTTGCGAATTCT-AAATTCTGTGTTGCGAATTCC
1 AAATTCTGTGTTGCGAATTCTCAAATTC-GTGTTGCGAATTCC
* *
16874008 AAATTCTTCATGTTGCGAATT-TGGAAATT-GTGTTGCGAA
1 AAATTC-T-GTGTTGCGAATTCT-CAAATTCGTGTTGCGAA
16874047 ATTGGAGTTA
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
41 6 0.08
42 31 0.42
43 20 0.27
44 11 0.15
45 5 0.07
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (42 bp):
AAATTCTGTGTTGCGAATTCTCAAATTCGTGTTGCGAATTCC
Found at i:16874043 original size:20 final size:20
Alignment explanation
Indices: 16874018--16874068 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
16874008 AAATTCTTCA
16874018 TGTTGCGAATTTGGAAATT-G
1 TGTTGCGAATTTGG-AATTAG
* *
16874038 TGTTGCGAAATTGGAGTTAG
1 TGTTGCGAATTTGGAATTAG
16874058 TGTTGCGAATT
1 TGTTGCGAATT
16874069 CGTTGGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.24, C:0.06, G:0.31, T:0.39
Consensus pattern (20 bp):
TGTTGCGAATTTGGAATTAG
Found at i:16879675 original size:22 final size:22
Alignment explanation
Indices: 16879650--16879709 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
16879640 GGTTCTACGC
*
16879650 GGTCCTTCGGGACAATCTATAT
1 GGTCCTTCGGGACAATCTACAT
* *
16879672 GGTCCTTCGGGACATTTCTACGT
1 GGTCCTTCGGGACA-ATCTACAT
*
16879695 GGTCATTCGGGACAA
1 GGTCCTTCGGGACAA
16879710 ATTCTACGCG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (22 bp):
GGTCCTTCGGGACAATCTACAT
Found at i:16879697 original size:23 final size:22
Alignment explanation
Indices: 16879642--16879717 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 22
16879632 GAGTCGAGGG
*
16879642 TTCTACGCGGTCCTTCGGGACA
1 TTCTACGTGGTCCTTCGGGACA
* **
16879664 ATCTATATGGTCCTTCGGGACA
1 TTCTACGTGGTCCTTCGGGACA
*
16879686 TTTCTACGTGGTCATTCGGGACAAA
1 -TTCTACGTGGTCCTTCGGGAC--A
16879711 TTCTACG
1 TTCTACG
16879718 CGATCCTCAG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 18 0.42
23 17 0.40
24 7 0.16
25 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.32
Consensus pattern (22 bp):
TTCTACGTGGTCCTTCGGGACA
Found at i:16879750 original size:23 final size:23
Alignment explanation
Indices: 16879730--16879779 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
16879720 ATCCTCAGGA
16879730 CAAAACTATGTGGCACTTCAGTG
1 CAAAACTATGTGGCACTTCAGTG
** *
16879753 CAACTCTATGTGGCACTTCGGTG
1 CAAAACTATGTGGCACTTCAGTG
16879776 CAAA
1 CAAA
16879780 TTATGTGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (23 bp):
CAAAACTATGTGGCACTTCAGTG
Found at i:16880727 original size:20 final size:21
Alignment explanation
Indices: 16880702--16880744 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
16880692 TTTTAAAATA
16880702 AAAATAAATAAAATAG-TTAT
1 AAAATAAATAAAATAGATTAT
* *
16880722 AAAATAATTAAATTAGATTAT
1 AAAATAAATAAAATAGATTAT
16880743 AA
1 AA
16880745 TTATTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAATAAATAAAATAGATTAT
Found at i:16881885 original size:21 final size:21
Alignment explanation
Indices: 16881860--16881899 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16881850 GATCATGGAG
* *
16881860 TTATAATTTAGGGTTTAAGAT
1 TTATAATTTAAGATTTAAGAT
16881881 TTATAATTTAAGATTTAAG
1 TTATAATTTAAGATTTAAG
16881900 TTAGGAGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (21 bp):
TTATAATTTAAGATTTAAGAT
Found at i:16883362 original size:5 final size:5
Alignment explanation
Indices: 16883353--16883402 Score: 73
Period size: 5 Copynumber: 10.0 Consensus size: 5
16883343 TGTCTCGTCT
* * *
16883353 CGGCA TGGCA CGGCA CGGCA CGACA TGGCA CGGCA CGGCA CGGCA CGGCA
1 CGGCA CGGCA CGGCA CGGCA CGGCA CGGCA CGGCA CGGCA CGGCA CGGCA
16883403 TGTCACGACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.22, C:0.36, G:0.38, T:0.04
Consensus pattern (5 bp):
CGGCA
Found at i:16883409 original size:20 final size:20
Alignment explanation
Indices: 16883353--16883402 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
16883343 TGTCTCGTCT
16883353 CGGCATGGCACGGCACGGCA
1 CGGCATGGCACGGCACGGCA
*
16883373 CGACATGGCACGGCACGGCA
1 CGGCATGGCACGGCACGGCA
*
16883393 CGGCACGGCA
1 CGGCATGGCA
16883403 TGTCACGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.36, G:0.38, T:0.04
Consensus pattern (20 bp):
CGGCATGGCACGGCACGGCA
Found at i:16883438 original size:6 final size:6
Alignment explanation
Indices: 16883427--16883451 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
16883417 ACGGCTCGAC
16883427 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
16883452 AATACGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:16889683 original size:22 final size:22
Alignment explanation
Indices: 16889631--16889683 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
16889621 TCAAGAGTTA
** *
16889631 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTACATGATATAATTC
*
16889653 CATGG-GTTACATGATATAATTT
1 CA-GGAGTTACATGATATAATTC
16889675 CAGGAGTTA
1 CAGGAGTTA
16889684 TAACAGCTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (22 bp):
CAGGAGTTACATGATATAATTC
Found at i:16894405 original size:65 final size:65
Alignment explanation
Indices: 16894331--16894484 Score: 168
Period size: 65 Copynumber: 2.4 Consensus size: 65
16894321 CACTTGGGGT
* * * *
16894331 CATCGGTACACT-AATTACATTCGATGTTTCAA-AAGAGCCAGTAGTGCATCGATGCATGGTCTG
1 CATCGGTACA-TAAAATACATTCGATGTGTCAATAAAAGCAAG-AGTGCATCGATGCATGGTCTG
16894394 TG
64 TG
* * * *
16894396 CATCGGTACATAAAATGCATTCGATGTGTCAATAAAATCAAGAGTGCATCGATGCATGGTTTGTA
1 CATCGGTACATAAAATACATTCGATGTGTCAATAAAAGCAAGAGTGCATCGATGCATGGTCTGTG
* * * *
16894461 AATTGGTACACAAAATGCATTCGA
1 CATCGGTACATAAAATACATTCGA
16894485 ATTAGGGTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 1 0.01
65 69 0.91
66 6 0.08
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (65 bp):
CATCGGTACATAAAATACATTCGATGTGTCAATAAAAGCAAGAGTGCATCGATGCATGGTCTGTG
Found at i:16896634 original size:15 final size:14
Alignment explanation
Indices: 16896592--16896635 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
16896582 AATGGGCAAA
*
16896592 ATTTGAAAACTAAT
1 ATTTGAAAAATAAT
16896606 -TTTGAAAAATAAT
1 ATTTGAAAAATAAT
16896619 ATTTGAAAAATCAAT
1 ATTTGAAAAAT-AAT
16896634 AT
1 AT
16896636 GTAGTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 12 0.44
14 10 0.37
15 5 0.19
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (14 bp):
ATTTGAAAAATAAT
Found at i:16897168 original size:44 final size:44
Alignment explanation
Indices: 16897103--16897208 Score: 160
Period size: 44 Copynumber: 2.4 Consensus size: 44
16897093 GATGTACTGA
* * *
16897103 ATAGTTTATCGATGCACATTCAATGA-ATGCATCAGTGCACTTTC
1 ATAGTGTATCGATGCATATTCAA-GAGATGCATCAGTACACTTTC
*
16897147 ATAGTGTATCGATGCATATTCAAGAGATGCATCGGTACACTTTC
1 ATAGTGTATCGATGCATATTCAAGAGATGCATCAGTACACTTTC
16897191 ATAGTGTATCGATGCATA
1 ATAGTGTATCGATGCATA
16897209 GTGTACAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
43 2 0.04
44 55 0.96
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (44 bp):
ATAGTGTATCGATGCATATTCAAGAGATGCATCAGTACACTTTC
Found at i:16897618 original size:15 final size:15
Alignment explanation
Indices: 16897598--16897631 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
16897588 ATATCTCCTT
*
16897598 TAATGACATGATCTC
1 TAATGAAATGATCTC
*
16897613 TAATGAAATGATGTC
1 TAATGAAATGATCTC
16897628 TAAT
1 TAAT
16897632 TTCAATATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (15 bp):
TAATGAAATGATCTC
Found at i:16900907 original size:20 final size:21
Alignment explanation
Indices: 16900868--16900907 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
16900858 GAAGCTTTAA
* *
16900868 GATCATCAATTTTCTTTTGAT
1 GATCATCAATTTACTCTTGAT
16900889 GATCATC-ATTTACTCTTGA
1 GATCATCAATTTACTCTTGA
16900908 AAGTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (21 bp):
GATCATCAATTTACTCTTGAT
Found at i:16902974 original size:19 final size:19
Alignment explanation
Indices: 16902950--16903002 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
16902940 ATAAGACCTA
16902950 GTGCATCGGTACACTTAGG
1 GTGCATCGGTACACTTAGG
*
16902969 GTGCATCGGTACACTTGGG
1 GTGCATCGGTACACTTAGG
16902988 GTGCATCGGTACACT
1 GTGCATCGGTACACT
16903003 AATTACATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.19, C:0.23, G:0.32, T:0.26
Consensus pattern (19 bp):
GTGCATCGGTACACTTAGG
Found at i:16906416 original size:20 final size:21
Alignment explanation
Indices: 16906388--16906429 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
16906378 AGTTATGGCC
*
16906388 ATTTCTAGCCG-TTGGGGATG
1 ATTTATAGCCGTTTGGGGATG
16906408 ATTTATAGCCGTTTGGGGATG
1 ATTTATAGCCGTTTGGGGATG
16906429 A
1 A
16906430 AATCTCTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.19, C:0.12, G:0.33, T:0.36
Consensus pattern (21 bp):
ATTTATAGCCGTTTGGGGATG
Found at i:16914245 original size:3 final size:3
Alignment explanation
Indices: 16914237--16914313 Score: 145
Period size: 3 Copynumber: 25.7 Consensus size: 3
16914227 TTTTTATCCA
16914237 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
16914285 TAT TAT TAT CAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
16914314 AATATATATT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:16914841 original size:15 final size:16
Alignment explanation
Indices: 16914821--16914850 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16914811 AAGAAGGAAG
16914821 ACAGAAA-AAAAAAAC
1 ACAGAAAGAAAAAAAC
16914836 ACAGAAAGAAAAAAA
1 ACAGAAAGAAAAAAA
16914851 AAACTACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (16 bp):
ACAGAAAGAAAAAAAC
Found at i:16915736 original size:20 final size:21
Alignment explanation
Indices: 16915697--16915743 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
16915687 GCTTTTAAAA
*
16915697 TATATTGTTTTAGTGGTATTT
1 TATATTGTTTTAATGGTATTT
**
16915718 T-TATTGTTTTAATTTTATTT
1 TATATTGTTTTAATGGTATTT
16915738 TATATT
1 TATATT
16915744 TTTAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (21 bp):
TATATTGTTTTAATGGTATTT
Found at i:16916441 original size:6 final size:7
Alignment explanation
Indices: 16916420--16916444 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
16916410 TGTCTCTATT
16916420 AATTAAA
1 AATTAAA
16916427 AATTAAA
1 AATTAAA
16916434 AATTAAA
1 AATTAAA
16916441 AATT
1 AATT
16916445 TATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAA
Found at i:16926891 original size:100 final size:100
Alignment explanation
Indices: 16926718--16926918 Score: 386
Period size: 100 Copynumber: 2.0 Consensus size: 100
16926708 CATCCAAGAG
16926718 ATTCCAAAAGGGTGATCTAGTACTAAAAAGATCTTGCCTATATATAAAGATTTCCAGTGGAAATG
1 ATTCCAAAAGGGTGATCTAGTACTAAAAAGATCTTGCCTATATATAAAGATTTCCAGTGGAAATG
16926783 GATGCCTAATTGGGAAGGGCCATACGTTGTGAAAA
66 GATGCCTAATTGGGAAGGGCCATACGTTGTGAAAA
16926818 ATTCCAAAAGGGTGATCTAGTACTAAAAAGATCTTGCCTATATATAAAGATTTCCA-TGGGAAAT
1 ATTCCAAAAGGGTGATCTAGTACTAAAAAGATCTTGCCTATATATAAAGATTTCCAGT-GGAAAT
16926882 GGATGCCTAATTGGGAAGGGCCATACGTTGTGAAAA
65 GGATGCCTAATTGGGAAGGGCCATACGTTGTGAAAA
16926918 A
1 A
16926919 GGCCTTTTCC
Statistics
Matches: 100, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
99 1 0.01
100 99 0.99
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (100 bp):
ATTCCAAAAGGGTGATCTAGTACTAAAAAGATCTTGCCTATATATAAAGATTTCCAGTGGAAATG
GATGCCTAATTGGGAAGGGCCATACGTTGTGAAAA
Found at i:16927039 original size:9 final size:9
Alignment explanation
Indices: 16927025--16927106 Score: 89
Period size: 9 Copynumber: 9.3 Consensus size: 9
16927015 AAGAAAAAAG
16927025 AAAAAAGAA
1 AAAAAAGAA
*
16927034 ACAAAAGAA
1 AAAAAAGAA
*
16927043 AGAAAAGAA
1 AAAAAAGAA
16927052 AAAAAAGAA
1 AAAAAAGAA
*
16927061 AGAAAAGAA
1 AAAAAAGAA
16927070 AAAAATAG--
1 AAAAA-AGAA
*
16927078 -AAAATGAA
1 AAAAAAGAA
*
16927086 AAAAAAGAG
1 AAAAAAGAA
16927095 AAAAAAGAA
1 AAAAAAGAA
16927104 AAA
1 AAA
16927107 GGGGGTCAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
6 1 0.02
7 4 0.07
9 53 0.88
10 2 0.03
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:16927046 original size:27 final size:26
Alignment explanation
Indices: 16927015--16927106 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
16927005 ATTATGCTTG
16927015 AAGAAAAAAGAAAAAAGAAACAAAAGA
1 AAGAAAAAAGAAAAAAGAAA-AAAAGA
16927042 AAGAAAAGAA-AAAAAAGAAAGAAAAGA
1 AAGAAAA-AAGAAAAAAGAAA-AAAAGA
* *
16927069 AA-AAAATAG-AAAATGAAAAAAA-A
1 AAGAAAAAAGAAAAAAGAAAAAAAGA
*
16927092 GAGAAAAAAGAAAAA
1 AAGAAAAAAGAAAAA
16927107 GGGGGTCAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
23 2 0.04
24 10 0.18
25 13 0.23
26 4 0.07
27 25 0.45
28 2 0.04
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (26 bp):
AAGAAAAAAGAAAAAAGAAAAAAAGA
Found at i:16927048 original size:18 final size:18
Alignment explanation
Indices: 16927018--16927106 Score: 100
Period size: 18 Copynumber: 5.2 Consensus size: 18
16927008 ATGCTTGAAG
16927018 AAAAAAG-AA-AAAAGAA
1 AAAAAAGAAAGAAAAGAA
*
16927034 ACAAAAGAAAGAAAAGAA
1 AAAAAAGAAAGAAAAGAA
16927052 AAAAAAGAAAGAAAAGAA
1 AAAAAAGAAAGAAAAGAA
*
16927070 AAAAATAG--A-AAATGAA
1 AAAAA-AGAAAGAAAAGAA
16927086 AAAAAAGAGAA-AAAAGAA
1 AAAAAAGA-AAGAAAAGAA
16927104 AAA
1 AAA
16927107 GGGGGTCAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
15 2 0.03
16 17 0.27
17 3 0.05
18 39 0.62
19 2 0.03
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (18 bp):
AAAAAAGAAAGAAAAGAA
Found at i:16927069 original size:43 final size:43
Alignment explanation
Indices: 16927020--16927104 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
16927010 GCTTGAAGAA
*
16927020 AAAAGAAAAAAGAAACAAAA-GAAAGAAAAGAAAAAAAAGAAAG
1 AAAAGAAAAAA-AAACAAAATGAAAAAAAAGAAAAAAAAGAAAG
* * *
16927063 AAAAGAAAAAAATAGAAAATGAAAAAAAAGAGAAAAAAGAAA
1 AAAAGAAAAAAAAACAAAATGAAAAAAAAGAAAAAAAAGAAA
16927105 AAGGGGGTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 6 0.16
43 31 0.84
ACGTcount: A:0.81, C:0.01, G:0.15, T:0.02
Consensus pattern (43 bp):
AAAAGAAAAAAAAACAAAATGAAAAAAAAGAAAAAAAAGAAAG
Found at i:16928134 original size:82 final size:83
Alignment explanation
Indices: 16928000--16928370 Score: 535
Period size: 82 Copynumber: 4.6 Consensus size: 83
16927990 AATAGAACAA
*
16928000 ATGAATTTGCCAATAGC-TCTTCT-G-TGTGTTCTTTGAGTTATCTGACCTGGTTTAG-CAGAAC
1 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGACAGAAC
* *
16928061 AATCATTGAGTTTAGAAG
66 AAGCATTGAATTTAGAAG
* *
16928079 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAACTGACCTGGTTTAG-CAGAAT
1 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGACAGAAC
*
16928143 AAGCATTGAATTTGGAAG
66 AAGCATTGAATTTAGAAG
* * * *
16928161 ATGAATTTGCCAATAGCCTCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT-GATTGGACAGAAT
1 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGACAGAA-
*
16928225 CAAGCATTGAATTTGGAAG
65 CAAGCATTGAATTTAGAAG
* *
16928244 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAGAAC
1 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGACAGAAC
* *
16928308 AATCATTGAGTTTAGAAG
66 AAGCATTGAATTTAGAAG
16928326 ATGAATTTGCCAATAG-ATCTTCTGGAAGTG-TCTTTGAGTTATCTG
1 ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTG
16928371 GTTTGGTATG
Statistics
Matches: 270, Mismatches: 16, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
79 17 0.06
80 21 0.08
81 19 0.07
82 134 0.50
83 78 0.29
84 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (83 bp):
ATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGACAGAAC
AAGCATTGAATTTAGAAG
Found at i:16928268 original size:165 final size:163
Alignment explanation
Indices: 16928000--16928370 Score: 536
Period size: 165 Copynumber: 2.3 Consensus size: 163
16927990 AATAGAACAA
* * *
16928000 ATGAATTTGCCAATAGCTCTTCT-G-TGTGTTCTTTGAGTTATCTGACCTGGTTTAGCAGAACAA
1 ATGAATTTGCCAATAGCTCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGATTGAGCAGAACAA
* *
16928063 TCATTGAGTTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAACTGAC
66 GCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAACTGAC
* *
16928128 CTGGTTTAG-CAGAATAAGCATTGAATTTGGAAG
131 CTGG-TTAGACAGAACAAGCATTGAATTTAGAAG
*
16928161 ATGAATTTGCCAATAGCCTCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTG-GACAGAAT
1 ATGAATTTGCCAATAG-CTCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGATTGAG-CAGAA-
* *
16928225 CAAGCATTGAATTTGGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCT
63 CAAGCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAACT
* * * *
16928290 GATCTGGTTGGACAGAACAATCATTGAGTTTAGAAG
128 GACCTGGTTAGACAGAACAAGCATTGAATTTAGAAG
*
16928326 ATGAATTTGCCAATAGATCTTCTGGAAGTG-TCTTTGAGTTATCTG
1 ATGAATTTGCCAATAGCTCTTCTGGAAGTGTTCTTTGAGTTATCTG
16928371 GTTTGGTATG
Statistics
Matches: 189, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
161 16 0.08
162 7 0.04
163 17 0.09
164 46 0.24
165 103 0.54
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (163 bp):
ATGAATTTGCCAATAGCTCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGATTGAGCAGAACAA
GCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAACTGAC
CTGGTTAGACAGAACAAGCATTGAATTTAGAAG
Found at i:16929409 original size:113 final size:112
Alignment explanation
Indices: 16929206--16929877 Score: 1103
Period size: 113 Copynumber: 6.0 Consensus size: 112
16929196 CAAAGATTCA
* * *
16929206 AATCTATCATTTGAAAGATTAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTG-AGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
16929271 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTACCTG
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
*
16929319 AATTCATCATTTGAGAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGAG-GATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
16929384 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
*
16929432 AATCCATCATTTGAGGGATTAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGA-GGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
16929497 AGGAATAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
16929545 AATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGA-GGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
16929610 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* *
16929658 AATCCATCATTTGAGGGATCATCTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGA-GGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
16929723 AGGAAGAAGAAGTTCATAATTAGAAGAATTTGTTCAACCTTTTACCTG
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * * * **
16929771 AATTCATCAATTGATGGATTATCTTTTCTGGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGA-GGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
* * * *
16929835 AGAAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTT
65 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
16929878 GCATAATTCT
Statistics
Matches: 531, Mismatches: 26, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
112 70 0.13
113 460 0.87
114 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (112 bp):
AATCCATCATTTGAGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
Found at i:16930205 original size:3 final size:3
Alignment explanation
Indices: 16930197--16930267 Score: 124
Period size: 3 Copynumber: 23.7 Consensus size: 3
16930187 TTTTTATCCA
*
16930197 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
16930245 TAT CAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
16930268 AATATATATT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:16931692 original size:20 final size:21
Alignment explanation
Indices: 16931653--16931699 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
16931643 GCTTTTAAAA
*
16931653 TATATTGTTTTAGTGGTATTT
1 TATATTGTTTTAATGGTATTT
**
16931674 T-TATTGTTTTAATTTTATTT
1 TATATTGTTTTAATGGTATTT
16931694 TATATT
1 TATATT
16931700 TTTAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (21 bp):
TATATTGTTTTAATGGTATTT
Found at i:16937117 original size:11 final size:11
Alignment explanation
Indices: 16937101--16937127 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
16937091 AACTTCTATT
16937101 TCCTCTAATAA
1 TCCTCTAATAA
16937112 TCCTCTAATAA
1 TCCTCTAATAA
16937123 TCCTC
1 TCCTC
16937128 ATATATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (11 bp):
TCCTCTAATAA
Found at i:16938010 original size:15 final size:14
Alignment explanation
Indices: 16937990--16938033 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
16937980 ATTAAGAAAT
*
16937990 TTAAAAACTTTAAA
1 TTAAAAAATTTAAA
*
16938004 TTAAAAAGATTTAAC
1 TTAAAAA-ATTTAAA
16938019 TGTAAAAAATTTAAA
1 T-TAAAAAATTTAAA
16938034 ATTGGGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 7 0.28
15 12 0.48
16 6 0.24
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (14 bp):
TTAAAAAATTTAAA
Found at i:16940630 original size:64 final size:64
Alignment explanation
Indices: 16940562--16940786 Score: 258
Period size: 64 Copynumber: 3.5 Consensus size: 64
16940552 TTGTTTGAAG
** **
16940562 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATT
16940625 T
64 T
* ** *
16940626 GTGCATCGATGCATAAGTAATGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTA
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTT
* * * * *
16940690 GTGCATCGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAATACAACATCGAATACATTTT
1 GTGCATCGATGCATAA-GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTT
* * *
16940754 ATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCAT
16940787 ACCTTCATTA
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
63 2 0.01
64 128 0.93
65 7 0.05
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (64 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTT
Found at i:16941662 original size:103 final size:103
Alignment explanation
Indices: 16941538--16941760 Score: 446
Period size: 103 Copynumber: 2.2 Consensus size: 103
16941528 GTCGAGGGTC
16941538 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
16941603 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
16941641 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
16941706 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
16941744 TATGTGGTCCTTCGGGA
1 TATGTGGTCCTTCGGGA
16941761 CATTATTATA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 120 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
Found at i:16947263 original size:19 final size:19
Alignment explanation
Indices: 16947239--16947289 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
16947229 GAAAATATTC
16947239 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
16947258 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
16947277 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
16947290 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:16947331 original size:65 final size:64
Alignment explanation
Indices: 16947133--16947340 Score: 239
Period size: 65 Copynumber: 3.2 Consensus size: 64
16947123 GCACCAAGTG
*
16947133 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCATGATGCATCGATGCATGG-CTTG
1 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAAT-TCATGATGCATCGATGCATGGAC-TG
16947197 -
64 A
*
16947197 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCA-GAGTGCATCGATGCATGGA--
1 TGCATCGATGCATGAAATGCATTCGATG-TTTGAAAA-ATTCATGA-TGCATCGATGCATGGACT
16947259 GA
63 GA
* * * *
16947261 GTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCATCGATGCATCGATGCATGGACT
1 -TGCATCGATGCATGAAATGCATTCGATGTTTGAA-AAATTCAT-GATGCATCGATGCATGGACT
16947325 GA
63 GA
*
16947327 TGCATCGGTGCATG
1 TGCATCGATGCATG
16947341 CCTTTGAATA
Statistics
Matches: 126, Mismatches: 7, Indels: 21
0.82 0.05 0.14
Matches are distributed among these distances:
63 10 0.08
64 46 0.37
65 66 0.52
66 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (64 bp):
TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATTCATGATGCATCGATGCATGGACTGA
Found at i:16953792 original size:22 final size:21
Alignment explanation
Indices: 16953750--16953789 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
16953740 TGAGTTGTTT
*
16953750 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
16953771 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
16953790 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:16955803 original size:19 final size:19
Alignment explanation
Indices: 16955779--16955829 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
16955769 AATAGCCTGA
16955779 TGCATCGATGCATGGCTTG
1 TGCATCGATGCATGGCTTG
*
16955798 TGCATCGATGCGTGGCTTG
1 TGCATCGATGCATGGCTTG
16955817 TGCATCGATGCAT
1 TGCATCGATGCAT
16955830 CAAATGCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.16, C:0.22, G:0.31, T:0.31
Consensus pattern (19 bp):
TGCATCGATGCATGGCTTG
Found at i:16955908 original size:83 final size:82
Alignment explanation
Indices: 16955734--16955909 Score: 194
Period size: 83 Copynumber: 2.1 Consensus size: 82
16955724 GCACCAAGTG
* * ***
16955734 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTGATGCATCGATGCATGGCTTGT
1 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGATGCATCGATGCATGGAGAGT
* **
16955799 GCATCGATGCGTGGCTTG
66 GCATCGATGCATGGC-AA
** *
16955817 TGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATTGAGA
1 TGCATCGATGCATCAAATGCATTCGATG-TTTGAAAAATAGCCAGA-TGCATCGATGCATGGAGA
*
16955881 GTGCATCGGTGCATGG-AA
64 GTGCATCGATGCATGGCAA
16955899 TGCATTCGATG
1 TGCA-TCGATG
16955910 TTCAATTAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
82 4 0.05
83 42 0.54
84 32 0.41
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (82 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGATGCATCGATGCATGGAGAGT
GCATCGATGCATGGCAA
Found at i:16957182 original size:103 final size:103
Alignment explanation
Indices: 16957056--16957277 Score: 410
Period size: 103 Copynumber: 2.2 Consensus size: 103
16957046 GTCGAGGGTC
16957056 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
16957121 TTGATCCCTAGTATATGTATATGATTCTTAAAGAGTGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAAGAGTGA
16957159 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
16957224 TTGATCTCTAGTATATGTATATGATTCTTAAGGAGTTA
66 TTGATCCCTAGTATATGTATATGATTCTTAAAGAGTGA
16957262 TA-GTGGTCCTTCGGGA
1 TATGTGGTCCTTCGGGA
16957278 CATTATTATA
Statistics
Matches: 116, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
102 14 0.12
103 102 0.88
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAAGAGTGA
Found at i:16957322 original size:23 final size:23
Alignment explanation
Indices: 16957289--16957351 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
16957279 ATTATTATAT
*
16957289 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
*
16957312 GGCACTTCGGTGCAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
16957335 GGCACTTCGGTGCAATT
1 GGCACTTCGGTGCAATT
16957352 ATATGAGCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Done.