Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008242.1 Hibiscus syriacus cultivar Beakdansim tig00110890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16962412
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 73
Found at i:1742870 original size:23 final size:21
Alignment explanation
Indices: 1742838--1742885 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
1742828 AACCTAATTT
1742838 TTTTTTTAT-TTTTTATTAAA
1 TTTTTTTATATTTTTATTAAA
*
1742858 TGTTTTTTATATTTTTATTTAA
1 T-TTTTTTATATTTTTATTAAA
1742880 TTTTTT
1 TTTTTT
1742886 AAATAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 11 0.44
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTTATATTTTTATTAAA
Found at i:1746315 original size:29 final size:30
Alignment explanation
Indices: 1746283--1746340 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
1746273 AATTTCTGAA
*
1746283 TTTGG-AACCGAATTTAATCAAAATTTCAC
1 TTTGGTAACCAAATTTAATCAAAATTTCAC
** *
1746312 TTTGGTCCCCAAATTTAATTAAAATTTCA
1 TTTGGTAACCAAATTTAATCAAAATTTCA
1746341 ATTTCATCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTGGTAACCAAATTTAATCAAAATTTCAC
Found at i:1750497 original size:16 final size:16
Alignment explanation
Indices: 1750478--1750513 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
1750468 CTAATGCCAA
*
1750478 GTCTTCTAGCCTAAAG
1 GTCTGCTAGCCTAAAG
1750494 GTCTGCTAGCCTAAAG
1 GTCTGCTAGCCTAAAG
1750510 GTCT
1 GTCT
1750514 ACTGCTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (16 bp):
GTCTGCTAGCCTAAAG
Found at i:1750520 original size:19 final size:17
Alignment explanation
Indices: 1750483--1750531 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
1750473 GCCAAGTCTT
1750483 CTAGCCTAAAGG-TCTG
1 CTAGCCTAAAGGTTCTG
1750499 CTAGCCTAAAGGTCTACTG
1 CTAGCCTAAAGGT-T-CTG
* *
1750518 CTATCTTAAAGGTT
1 CTAGCCTAAAGGTT
1750532 TAAAATTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.43
18 2 0.07
19 14 0.50
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (17 bp):
CTAGCCTAAAGGTTCTG
Found at i:1750803 original size:39 final size:39
Alignment explanation
Indices: 1750747--1750835 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
1750737 GAACCTATGA
* * * *
1750747 TAAGGACGTACCTTGAGCACAAAGCCGAA-GAGCCTGCTG
1 TAAGGACTTACCCTGAGCACAAAGCC-AAGGAGCCTACGG
*
1750786 TAAGGACTTACCCTGAGCTCAAAGCCAAGGAGCCTACGG
1 TAAGGACTTACCCTGAGCACAAAGCCAAGGAGCCTACGG
*
1750825 TAAGGTCTTAC
1 TAAGGACTTAC
1750836 AAGTCATAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 2 0.05
39 41 0.95
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (39 bp):
TAAGGACTTACCCTGAGCACAAAGCCAAGGAGCCTACGG
Found at i:1752180 original size:30 final size:30
Alignment explanation
Indices: 1752137--1752193 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
1752127 TTTGGATATG
* *
1752137 AATTTAATCAAAATTTCACTTTGGTCCCCT
1 AATTTAATCAAAATTTCAATTTAGTCCCCT
* *
1752167 AATTTGATTAAAATTTCAATTTAGTCC
1 AATTTAATCAAAATTTCAATTTAGTCC
1752194 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (30 bp):
AATTTAATCAAAATTTCAATTTAGTCCCCT
Found at i:1754522 original size:31 final size:31
Alignment explanation
Indices: 1754484--1754579 Score: 192
Period size: 31 Copynumber: 3.1 Consensus size: 31
1754474 AAACTCGCTT
1754484 AACTATTCAACAATTGAAGTTAGCACCATTC
1 AACTATTCAACAATTGAAGTTAGCACCATTC
1754515 AACTATTCAACAATTGAAGTTAGCACCATTC
1 AACTATTCAACAATTGAAGTTAGCACCATTC
1754546 AACTATTCAACAATTGAAGTTAGCACCATTC
1 AACTATTCAACAATTGAAGTTAGCACCATTC
1754577 AAC
1 AAC
1754580 CTTTCTTTAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (31 bp):
AACTATTCAACAATTGAAGTTAGCACCATTC
Found at i:1759265 original size:27 final size:26
Alignment explanation
Indices: 1759227--1759279 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
1759217 TAAAAATAAC
*
1759227 TCGTTGACTTTGACCTATTGACTTTGA
1 TCGTTGACTTTGACC-ATTAACTTTGA
1759254 TCGTTGACTTTGACCATTAACTTTGA
1 TCGTTGACTTTGACCATTAACTTTGA
1759280 CCAAAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (26 bp):
TCGTTGACTTTGACCATTAACTTTGA
Found at i:1759276 original size:13 final size:13
Alignment explanation
Indices: 1759230--1759282 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
1759220 AAATAACTCG
1759230 TTGACTTTGACCTA
1 TTGACTTTGACC-A
* *
1759244 TTGACTTTGATCG
1 TTGACTTTGACCA
1759257 TTGACTTTGACCA
1 TTGACTTTGACCA
*
1759270 TTAACTTTGACCA
1 TTGACTTTGACCA
1759283 AAAAGTGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 23 0.68
14 11 0.32
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGACTTTGACCA
Found at i:1763540 original size:15 final size:15
Alignment explanation
Indices: 1763520--1763549 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1763510 TCAAAGATCA
1763520 AATTAACGTCGCATG
1 AATTAACGTCGCATG
1763535 AATTAACGTCGCATG
1 AATTAACGTCGCATG
1763550 GGACATGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (15 bp):
AATTAACGTCGCATG
Found at i:1763648 original size:33 final size:29
Alignment explanation
Indices: 1763572--1763676 Score: 120
Period size: 29 Copynumber: 3.5 Consensus size: 29
1763562 CCCAAAACAT
*
1763572 AGGTCGCCATGCCCTCCGGGCGACCAACG
1 AGGTCGCCATGCACTCCGGGCGACCAACG
*
1763601 AGGTCGCCATGCACTCCGGGCGACCATGCG
1 AGGTCGCCATGCACTCCGGGCGACCA-ACG
* * *
1763631 ACTTGGTTGCCATGCACTTCGGGCGACCAAGG
1 A---GGTCGCCATGCACTCCGGGCGACCAACG
*
1763663 AGGTCGCCAAGCAC
1 AGGTCGCCATGCAC
1763677 GCCAGGAGAC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
29 36 0.56
30 3 0.05
32 2 0.03
33 23 0.36
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.14
Consensus pattern (29 bp):
AGGTCGCCATGCACTCCGGGCGACCAACG
Found at i:1763738 original size:29 final size:29
Alignment explanation
Indices: 1763663--1763744 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
1763653 GCGACCAAGG
* ** *
1763663 AGGTCGCCAAGCACGCCAGGAGACATGGT
1 AGGTCGCCATGCACGCCCCGCGACATGGT
1763692 AGGTCGCCATGCACGCCCCGCGACATGGT
1 AGGTCGCCATGCACGCCCCGCGACATGGT
1763721 AGGTCGCCATGCACGCCCCGCGAC
1 AGGTCGCCATGCACGCCCCGCGAC
1763745 CTTGTCTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.21, C:0.37, G:0.32, T:0.11
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCCGCGACATGGT
Found at i:1763792 original size:22 final size:22
Alignment explanation
Indices: 1763760--1763808 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
1763750 CTTGGCCCTA
*
1763760 CTCCCCGCTGCATGCTCGCCTG
1 CTCCCCACTGCATGCTCGCCTG
*
1763782 CTCCCCACTGCATGCTCGCCTT
1 CTCCCCACTGCATGCTCGCCTG
1763804 CTCCC
1 CTCCC
1763809 GCTGCTCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.06, C:0.53, G:0.16, T:0.24
Consensus pattern (22 bp):
CTCCCCACTGCATGCTCGCCTG
Found at i:1764143 original size:17 final size:17
Alignment explanation
Indices: 1764121--1764156 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
1764111 TTATTAGTTT
1764121 GTTAGTTTAGGGTTAGG
1 GTTAGTTTAGGGTTAGG
1764138 GTTAGTTTAGGGTTAGG
1 GTTAGTTTAGGGTTAGG
1764155 GT
1 GT
1764157 AAAACATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.42, T:0.42
Consensus pattern (17 bp):
GTTAGTTTAGGGTTAGG
Found at i:1764359 original size:30 final size:30
Alignment explanation
Indices: 1764290--1764395 Score: 135
Period size: 30 Copynumber: 3.5 Consensus size: 30
1764280 TTTAGTTAAT
*
1764290 TAGTTTTTTAGTAGTGAA-TTATAATTAAA-AA
1 TAGTTTATTAGT--TGAAGTTAT-ATTAAAGAA
*
1764321 AACGTTTATTAGTTGAAGTTATATTAAAGAA
1 TA-GTTTATTAGTTGAAGTTATATTAAAGAA
*
1764352 TATTTTATTAGTTGAAGTTATATTAAAGAA
1 TAGTTTATTAGTTGAAGTTATATTAAAGAA
1764382 TAGTTTATTAGTTG
1 TAGTTTATTAGTTG
1764396 TTTAAAGAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
30 50 0.75
31 8 0.12
32 9 0.13
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.45
Consensus pattern (30 bp):
TAGTTTATTAGTTGAAGTTATATTAAAGAA
Found at i:1764476 original size:15 final size:16
Alignment explanation
Indices: 1764448--1764481 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
1764438 GTTTGTTACT
1764448 TTATAAGTTTATTATA
1 TTATAAGTTTATTATA
1764464 TTATAAG-TTATTATA
1 TTATAAGTTTATTATA
1764479 TTA
1 TTA
1764482 AATTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTATAAGTTTATTATA
Found at i:1766974 original size:11 final size:11
Alignment explanation
Indices: 1766960--1766988 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1766950 TTATAAAACC
1766960 ATTACTAAATA
1 ATTACTAAATA
1766971 ATTACTAAATA
1 ATTACTAAATA
1766982 ATTACTA
1 ATTACTA
1766989 TTAAATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTACTAAATA
Found at i:1767013 original size:12 final size:12
Alignment explanation
Indices: 1766987--1767395 Score: 227
Period size: 12 Copynumber: 33.0 Consensus size: 12
1766977 AAATAATTAC
1766987 TATTA-AATCAT
1 TATTATAATCAT
*
1766998 TATTATAATGAT
1 TATTATAATCAT
1767010 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767024 TACTA-AATCAT
1 TATTATAATCAT
* * * * *
1767035 CA-AATCATTAAA
1 TATTAT-AATCAT
1767047 TATT-TAAATCAT
1 TATTAT-AATCAT
1767059 TATTA-AATCAT
1 TATTATAATCAT
*
1767070 TATTATAATGAT
1 TATTATAATCAT
1767082 TATTACTAAATCAT
1 TATTA-T-AATCAT
*
1767096 TATTATAATGAT
1 TATTATAATCAT
1767108 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767122 TATTATAATGAT
1 TATTATAATCAT
1767134 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767148 TATTATAATGAT
1 TATTATAATCAT
1767160 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767174 TACTA-AATCAT
1 TATTATAATCAT
* * * * *
1767185 CA-AATCATTAAA
1 TATTAT-AATCAT
1767197 TATT-TAAATCAT
1 TATTAT-AATCAT
*
1767209 TATTATAATAAT
1 TATTATAATCAT
1767221 TATTACTAAATCAT
1 TATTA-T-AATCAT
*
1767235 TATTATAATGAT
1 TATTATAATCAT
1767247 TATTATCACATCAT
1 TATTAT-A-ATCAT
* *
1767261 TACTAAAGCATCAAAT
1 TATTATA--ATC--AT
*
1767277 CATTA-AAT-A-
1 TATTATAATCAT
1767286 T-TTA-AATCAT
1 TATTATAATCAT
1767296 TATTA-AATCAT
1 TATTATAATCAT
*
1767307 TATTATAATGAT
1 TATTATAATCAT
1767319 TATTACTAAATCAT
1 TATTA-T-AATCAT
*
1767333 TATTATAATGAT
1 TATTATAATCAT
1767345 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767359 TATTATAATGAT
1 TATTATAATCAT
1767371 TATTATCAAATCAT
1 TATTAT--AATCAT
*
1767385 TACTA-AATCAT
1 TATTATAATCAT
1767396 CAAATCATTA
Statistics
Matches: 311, Mismatches: 50, Indels: 74
0.71 0.11 0.17
Matches are distributed among these distances:
8 6 0.02
9 1 0.00
10 4 0.01
11 50 0.16
12 131 0.42
13 11 0.04
14 102 0.33
15 1 0.00
16 5 0.02
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.43
Consensus pattern (12 bp):
TATTATAATCAT
Found at i:1767020 original size:26 final size:26
Alignment explanation
Indices: 1766982--1767386 Score: 308
Period size: 26 Copynumber: 15.7 Consensus size: 26
1766972 TTACTAAATA
* *
1766982 ATTACTATTAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
* *
1767008 ATTATTATCAAATCATTACTA-AATC
1 ATTATTATCAAATCATTATTATAATG
* * * * *
1767033 ATCA-AATC-ATTAAATATT-TAA--
1 ATTATTATCAAATCATTATTATAATG
* *
1767054 ATCATTATTAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
1767080 ATTATTA-CTAAATCATTATTATAATG
1 ATTATTATC-AAATCATTATTATAATG
1767106 ATTATTATCAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
1767132 ATTATTATCAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
* *
1767158 ATTATTATCAAATCATTACTA-AATC
1 ATTATTATCAAATCATTATTATAATG
* * * *
1767183 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTATCAAATCATTATTATAATG
* *
1767207 ATTATTAT--AATAATTATTACTAAATC
1 ATTATTATCAAATCATTATTA-T-AATG
* *
1767233 ATTATTAT--AATGATTATTATCACATC
1 ATTATTATCAAATCATTATTAT-A-ATG
* *
1767259 ATTACTAAAGCATCAAATCATTAAATATTTAA--
1 ATTA-T----TATCAAATCATT--AT-TATAATG
* *
1767291 ATCATTATTAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
1767317 ATTATTA-CTAAATCATTATTATAATG
1 ATTATTATC-AAATCATTATTATAATG
1767343 ATTATTATCAAATCATTATTATAATG
1 ATTATTATCAAATCATTATTATAATG
1767369 ATTATTATCAAATCATTA
1 ATTATTATCAAATCATTA
1767387 CTAAATCATC
Statistics
Matches: 312, Mismatches: 36, Indels: 62
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.01
21 5 0.02
22 7 0.02
23 18 0.06
24 18 0.06
25 16 0.05
26 206 0.66
27 21 0.07
31 3 0.01
32 3 0.01
33 6 0.02
34 1 0.00
35 3 0.01
36 2 0.01
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.43
Consensus pattern (26 bp):
ATTATTATCAAATCATTATTATAATG
Found at i:1767119 original size:52 final size:52
Alignment explanation
Indices: 1767057--1767386 Score: 347
Period size: 52 Copynumber: 6.3 Consensus size: 52
1767047 TATTTAAATC
*
1767057 ATTATTAAATCATTATTATAATGATTATTA-CTAAATCATTATTATAATGATT
1 ATTATCAAATCATTATTATAATGATTATTATC-AAATCATTATTATAATGATT
1767109 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
1 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
* * * *
1767161 ATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATTATAATAATT
1 ATTATCAAATCATTA-T---T-AT--AATGATT-ATTA-TCAAATCATTATTATAATGATT
* * *
1767222 ATTA-CTAAATCATTATTATAATGATTATTATCACATCATTACTA-AA-GCATC
1 ATTATC-AAATCATTATTATAATGATTATTATCAAATCATTATTATAATG-ATT
* * * * * *
1767273 A-AATC-ATTAAATATT-TAA--ATCATTATTAAATCATTATTATAATGATT
1 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
1767320 ATTA-CTAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
1 ATTATC-AAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
1767372 ATTATCAAATCATTA
1 ATTATCAAATCATTA
1767387 CTAAATCATC
Statistics
Matches: 229, Mismatches: 27, Indels: 44
0.76 0.09 0.15
Matches are distributed among these distances:
46 17 0.07
47 6 0.03
48 5 0.02
49 14 0.06
50 4 0.02
51 6 0.03
52 115 0.50
53 6 0.03
54 6 0.03
56 3 0.01
57 3 0.01
59 6 0.03
60 5 0.02
61 33 0.14
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (52 bp):
ATTATCAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATT
Found at i:1767211 original size:98 final size:97
Alignment explanation
Indices: 1767109--1767360 Score: 382
Period size: 87 Copynumber: 2.7 Consensus size: 97
1767099 TATAATGATT
1767109 ATTATCAAATCATTATTATAATGATTATTA-TCAAATCATTATTATAATGATTATTATCAAATCA
1 ATTAT-AAATCATTATTATAATGATTATTACT-AAATCATTATTATAATGATTATTATCAAATCA
*
1767173 TTACTAAATCATCAAATCATTAAATATTTAAATC
64 TTACTAAAGCATCAAATCATTAAATATTTAAATC
*
1767207 ATTAT---T-A-TA--AT-A--ATTATTACTAAATCATTATTATAATGATTATTATCACATCATT
1 ATTATAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATT
1767262 ACTAAAGCATCAAATCATTAAATATTTAAATC
66 ACTAAAGCATCAAATCATTAAATATTTAAATC
1767294 ATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTA-TAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1767359 TA
65 TA
1767361 TTATAATGAT
Statistics
Matches: 139, Mismatches: 3, Indels: 24
0.84 0.02 0.14
Matches are distributed among these distances:
87 75 0.54
88 2 0.01
89 1 0.01
90 2 0.01
91 1 0.01
92 3 0.02
93 3 0.02
94 1 0.01
95 2 0.01
96 1 0.01
98 48 0.35
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.43
Consensus pattern (97 bp):
ATTATAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATT
ACTAAAGCATCAAATCATTAAATATTTAAATC
Found at i:1767225 original size:211 final size:208
Alignment explanation
Indices: 1766921--1767434 Score: 614
Period size: 211 Copynumber: 2.4 Consensus size: 208
1766911 TTTAGTAATA
* * * * * * *
1766921 ATTATTAAATCATTAATATTAAATTATTATTATAAAACCATTACTAAATAATTACTAAATAATT-
1 ATTATCAAATCATTATTA-T-AATGATTATTATCAAATCATTACTAAATCA-T-C-AAATCATTA
* * *
1766985 ACTATTAAATCATTATTATAATGATTATTA-TCAAATCATTACTA-AATCATCAAATCATTAAAT
61 AATATTAAATCATTATTATAATAATTATTACT-AAATCATTACTATAATCAT--AATCATCAAAT
* * *
1767048 -ATT-TAAATCATTATTAAATCATT-AT-TATAATGATTATTACTAAATCATTATTATAATGATT
123 CATTATAAAGC---ATCAAATCATTAATATATAA--ATCATTACTAAATCATTATTATAATGATT
1767109 ATTA-TCAAATCATTATTATAATGATT
183 ATTACT-AAATCATTATTATAATGATT
1767135 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
1 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATA-
* * * * *
1767200 TTAAATCATTATTATAATAATTATTACTAAATCATTATTATAATGATTATTATCACATCATTACT
65 TTAAATCATTATTATAATAATTATTACTAAATCATTACTATAATCATAATCATCAAATCATTA-T
* *
1767265 AAAGCATCAAATCATTAAATATTTAAATCATTATTAAATCATTATTATAATGATTATTACTAAAT
129 AAAGCATCAAATCATT-AATATATAAATCATTACTAAATCATTATTATAATGATTATTACTAAAT
1767330 CATTATTATAATGATT
193 CATTATTATAATGATT
1767346 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
1 ATTATCAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
*
1767411 TAAATTCATTATTA-AATCATTATT
66 TAAA-TCATTATTATAATAATTATT
1767435 TAAATTATTA
Statistics
Matches: 267, Mismatches: 21, Indels: 28
0.84 0.07 0.09
Matches are distributed among these distances:
209 7 0.03
210 35 0.13
211 164 0.61
212 35 0.13
213 10 0.04
214 16 0.06
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (208 bp):
ATTATCAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATAT
TAAATCATTATTATAATAATTATTACTAAATCATTACTATAATCATAATCATCAAATCATTATAA
AGCATCAAATCATTAATATATAAATCATTACTAAATCATTATTATAATGATTATTACTAAATCAT
TATTATAATGATT
Found at i:1767425 original size:12 final size:11
Alignment explanation
Indices: 1767408--1767454 Score: 58
Period size: 12 Copynumber: 4.1 Consensus size: 11
1767398 AATCATTAAA
1767408 TATTAAATTCAT
1 TATTAAA-TCAT
1767420 TATTAAATCAT
1 TATTAAATCAT
*
1767431 TATTTAAATTAT
1 TA-TTAAATCAT
*
1767443 TATCAAATCAT
1 TATTAAATCAT
1767454 T
1 T
1767455 TTTATGGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 14 0.45
12 17 0.55
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTAAATCAT
Found at i:1767427 original size:98 final size:92
Alignment explanation
Indices: 1767115--1767459 Score: 315
Period size: 98 Copynumber: 3.7 Consensus size: 92
1767105 GATTATTATC
1767115 AAATCATTATTA-TAATGATTATTA-TCAAATCATTATTATAATGATTATTATCAAATCATTA--
1 AAATCATTATTATTAA--ATTATTACT-AAATCATTATTATAATGATTATTATCAAATCATTATT
*
1767176 CT-A-A-ATCATCAAATCA-TTAAAT-ATTT
63 ATAAGATATCATCAAATCATTTAAATCA-TT
* * *
1767202 AAATCATTATTATAATAATTATTACTAAATCATTATTATAATGATTATTATCACATCATTACTA-
1 AAATCATTATTATTA-AATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTAT
*
1767266 AAGCATCAAATCATTAAAT-ATTTAAATCATTATT
65 AAG-AT---ATCATCAAATCATTTAAATC---ATT
1767300 AAATCATTATTA-TAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTA
1 AAATCATTATTATTAA--ATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTA
* *
1767364 TAATGATTATTATCAAATCATTACTAAATCATC
64 TAA-GA-TATCATCAAATCATT--TAAATCATT
* * *
1767397 AAATCATTAAATATTAAATTCATTATTAAATCATTATT-TAA--ATTATTATCAAATCATTTTTA
1 AAATCATT-ATTATTAAATT-ATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTA
1767459 T
64 T
1767460 GGTTAATTGA
Statistics
Matches: 217, Mismatches: 13, Indels: 48
0.78 0.05 0.17
Matches are distributed among these distances:
87 53 0.24
88 2 0.01
89 2 0.01
91 1 0.00
94 1 0.00
95 36 0.17
96 1 0.00
97 25 0.12
98 81 0.37
99 7 0.03
100 8 0.04
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.43
Consensus pattern (92 bp):
AAATCATTATTATTAAATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTATA
AGATATCATCAAATCATTTAAATCATT
Found at i:1767646 original size:14 final size:14
Alignment explanation
Indices: 1767627--1767686 Score: 84
Period size: 14 Copynumber: 4.1 Consensus size: 14
1767617 AATCATTACT
1767627 AATCATTATTATTA
1 AATCATTATTATTA
*
1767641 AATCATTATTAGTA
1 AATCATTATTATTA
1767655 AATCATTATTATTA
1 AATCATTATTATTA
1767669 TAATTTCATTATTATTA
1 -AA--TCATTATTATTA
1767686 A
1 A
1767687 TAATTACTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
14 26 0.63
15 2 0.05
16 1 0.02
17 12 0.29
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.50
Consensus pattern (14 bp):
AATCATTATTATTA
Found at i:1767665 original size:17 final size:17
Alignment explanation
Indices: 1767645--1767690 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
1767635 TTATTAAATC
1767645 ATTATTAGTAA-ATCATT
1 ATTATTA-TAATATCATT
*
1767662 ATTATTATAATTTCATT
1 ATTATTATAATATCATT
1767679 ATTATTAATAAT
1 ATTATT-ATAAT
1767691 TACTAATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 3 0.12
17 18 0.69
18 5 0.19
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTATTATAATATCATT
Found at i:1767734 original size:59 final size:57
Alignment explanation
Indices: 1767668--1767827 Score: 172
Period size: 49 Copynumber: 3.1 Consensus size: 57
1767658 CATTATTATT
1767668 ATAATTTCATTATTATTAATAATTACTAATCATTACTATCAAATAATTAAATATTAATA
1 ATAATTTCATTATTA-TAAT-ATTACTAATCATTACTATCAAATAATTAAATATTAATA
*
1767727 ATAATTTC------AT--TATTACTAATCATTACTATCAAATCATTAAATATTAATA
1 ATAATTTCATTATTATAATATTACTAATCATTACTATCAAATAATTAAATATTAATA
*
1767776 ATAATTTC------AT--TATTACTAATCATTACTATCAAATCATTAAATATTAATA
1 ATAATTTCATTATTATAATATTACTAATCATTACTATCAAATAATTAAATATTAATA
1767825 ATA
1 ATA
1767828 GATGGGTGCC
Statistics
Matches: 100, Mismatches: 1, Indels: 10
0.90 0.01 0.09
Matches are distributed among these distances:
49 89 0.89
50 1 0.01
52 1 0.01
53 1 0.01
59 8 0.08
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (57 bp):
ATAATTTCATTATTATAATATTACTAATCATTACTATCAAATAATTAAATATTAATA
Found at i:1767745 original size:49 final size:49
Alignment explanation
Indices: 1767689--1767827 Score: 269
Period size: 49 Copynumber: 2.8 Consensus size: 49
1767679 ATTATTAATA
*
1767689 ATTACTAATCATTACTATCAAATAATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1767738 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1767787 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
1767828 GATGGGTGCC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 89 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:1771070 original size:21 final size:22
Alignment explanation
Indices: 1771054--1771096 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1771044 TATAAATTAA
1771054 ACAAAATATTTTTTAAAACAAC
1 ACAAAATATTTTTTAAAACAAC
*
1771076 ACTAAATA-TTTTTAAACACAA
1 ACAAAATATTTTTTAAA-ACAA
1771097 TATTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
ACAAAATATTTTTTAAAACAAC
Found at i:1771643 original size:21 final size:21
Alignment explanation
Indices: 1771610--1771653 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1771600 AATATAATAT
1771610 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
1771631 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
1771652 AT
1 AT
1771654 TAGCTAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:1772145 original size:65 final size:65
Alignment explanation
Indices: 1772033--1772158 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 65
1772023 TGCAGCTATG
* * *
1772033 GATGTAGGAATCTCCCAGTTATGGATGCAACGCATGCATGAGTGATAGGGTTAAAGCTTGGTCGC
1 GATGCAGGAATCTCCCAGCTATGGATGCAACGCATGCATGAGGGATAGGGTTAAAGCTTGGTCGC
* * *
1772098 GATGCAGGAATCTCCCAGCTATGGATGCAATGTATGTATGAGGGATAGGGTTAAAGCTTGG
1 GATGCAGGAATCTCCCAGCTATGGATGCAACGCATGCATGAGGGATAGGGTTAAAGCTTGG
1772159 CCGTGGTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (65 bp):
GATGCAGGAATCTCCCAGCTATGGATGCAACGCATGCATGAGGGATAGGGTTAAAGCTTGGTCGC
Found at i:1772302 original size:16 final size:16
Alignment explanation
Indices: 1772281--1772333 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 16
1772271 GCTCTTTGGT
1772281 CACCGATCTCCCCATG
1 CACCGATCTCCCCATG
* *
1772297 CACCGATATCCCCATA
1 CACCGATCTCCCCATG
1772313 CATGCACGATCTCCCCATG
1 CA--C-CGATCTCCCCATG
1772332 CA
1 CA
1772334 TGCACCGATC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 16 0.53
18 1 0.03
19 13 0.43
ACGTcount: A:0.25, C:0.45, G:0.11, T:0.19
Consensus pattern (16 bp):
CACCGATCTCCCCATG
Found at i:1772327 original size:19 final size:20
Alignment explanation
Indices: 1772293--1772348 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 20
1772283 CCGATCTCCC
*
1772293 CATGCACCGATATCCCCATA
1 CATGCACCGATCTCCCCATA
*
1772313 CATGCA-CGATCTCCCCATG
1 CATGCACCGATCTCCCCATA
1772332 CATGCACCGATCTCCCC
1 CATGCACCGATCTCCCC
1772349 CCCCCCCATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.23, C:0.45, G:0.12, T:0.20
Consensus pattern (20 bp):
CATGCACCGATCTCCCCATA
Found at i:1772430 original size:29 final size:29
Alignment explanation
Indices: 1772398--1772502 Score: 174
Period size: 29 Copynumber: 3.6 Consensus size: 29
1772388 CCCCGAGTGT
*
1772398 ATGGTGACCTCCTTGGTCGTTGGGCGTGC
1 ATGGCGACCTCCTTGGTCGTTGGGCGTGC
*
1772427 ATGGCGACCTCCTTGGTTGTTGGGCGTGC
1 ATGGCGACCTCCTTGGTCGTTGGGCGTGC
*
1772456 ATGGCGACCTCTTTGGTCGTTGGGCGTGC
1 ATGGCGACCTCCTTGGTCGTTGGGCGTGC
*
1772485 ATGGCGACCTCTTTGGTC
1 ATGGCGACCTCCTTGGTC
1772503 ACTGTAGAAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.08, C:0.25, G:0.36, T:0.31
Consensus pattern (29 bp):
ATGGCGACCTCCTTGGTCGTTGGGCGTGC
Found at i:1773445 original size:17 final size:17
Alignment explanation
Indices: 1773423--1773459 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
1773413 ATCAAGGCAA
*
1773423 TACTGAAACTATTTTGG
1 TACTGAAACTATTTTAG
*
1773440 TACTGATACTATTTTAG
1 TACTGAAACTATTTTAG
1773457 TAC
1 TAC
1773460 CGATAATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (17 bp):
TACTGAAACTATTTTAG
Found at i:1773464 original size:17 final size:17
Alignment explanation
Indices: 1773430--1773464 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1773420 CAATACTGAA
* *
1773430 ACTATTTTGGTACTGAT
1 ACTATTTTAGTACCGAT
1773447 ACTATTTTAGTACCGAT
1 ACTATTTTAGTACCGAT
1773464 A
1 A
1773465 ATACTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (17 bp):
ACTATTTTAGTACCGAT
Found at i:1776822 original size:75 final size:75
Alignment explanation
Indices: 1776733--1776899 Score: 221
Period size: 76 Copynumber: 2.2 Consensus size: 75
1776723 TAAACTCAAG
*
1776733 TTTAGGATAATATTTTAAACATTATAT-TTTATCTTT-GTATTTTAGTTTAAATAGGTTTTAGTA
1 TTTAGGATATTATTTT-AACATTATATCTTTAT-TTTAGTATTTTAGTTTAAATAGGTTTTAGTA
*
1776796 TTTTAATTAAGT
64 TTTTAATTAAGA
* * * *
1776808 TTTAGGATATTATTTTTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTAT
1 TTTAGGATATTATTTTAACATTATATCTTTATTTTA-GTATTTTAGTTTAAATAGGTTTTAGTAT
*
1776873 TTTAATTAGGA
65 TTTAATTAAGA
*
1776884 TTTAGAATATTATTTT
1 TTTAGGATATTATTTT
1776900 TTAGGTATTT
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
74 10 0.12
75 19 0.23
76 52 0.64
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (75 bp):
TTTAGGATATTATTTTAACATTATATCTTTATTTTAGTATTTTAGTTTAAATAGGTTTTAGTATT
TTAATTAAGA
Found at i:1777583 original size:18 final size:18
Alignment explanation
Indices: 1777560--1777602 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1777550 CTTTAAATTA
*
1777560 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
*
1777578 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
1777596 TTTATTT
1 TTTATTT
1777603 TAAAAATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:1777679 original size:34 final size:34
Alignment explanation
Indices: 1777641--1777733 Score: 102
Period size: 33 Copynumber: 2.7 Consensus size: 34
1777631 TCTTTACTAC
1777641 TATTTATATATTATTTTATTATTTTTCCCTTTTT
1 TATTTATATATTATTTTATTATTTTTCCCTTTTT
**
1777675 TATTTAT-TATT-TATTTATTATTTTTTTCTTTTT
1 TATTTATATATTAT-TTTATTATTTTTCCCTTTTT
* *
1777708 TAAATTATA-ATTATTTATTTTATTTT
1 T-ATTTATATATTATTT-TATTATTTT
1777734 ATTATATCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
32 1 0.02
33 23 0.46
34 17 0.34
35 9 0.18
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (34 bp):
TATTTATATATTATTTTATTATTTTTCCCTTTTT
Found at i:1777689 original size:11 final size:11
Alignment explanation
Indices: 1777673--1777697 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1777663 TTTTCCCTTT
1777673 TTTATTTATTA
1 TTTATTTATTA
1777684 TTTATTTATTA
1 TTTATTTATTA
1777695 TTT
1 TTT
1777698 TTTTCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:1777699 original size:26 final size:25
Alignment explanation
Indices: 1777670--1777738 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
1777660 TATTTTTCCC
*
1777670 TTTTTTATTTATTATTTATTTATTAT
1 TTTTTTATTTATTATTTA-TAATTAT
* * *
1777696 TTTTTTCTTTTTTAAATTATAATTAT
1 TTTTTTATTTATT-ATTTATAATTAT
1777722 TTATTTTATTTTATTAT
1 TT-TTTTA-TTTATTAT
1777739 ATCTTTTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
26 19 0.58
27 9 0.27
28 5 0.15
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTTTTATTTATTATTTATAATTAT
Found at i:1783267 original size:5 final size:5
Alignment explanation
Indices: 1783252--1783380 Score: 102
Period size: 5 Copynumber: 25.8 Consensus size: 5
1783242 TCGTTCTATT
* * **
1783252 TTTTAA TTTTA TTTTA TTTTA TTTCA TTTTA TTTTTG TTTTA TTTTA TTTCG
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
*** * * *
1783304 TTTTA TTTTA TTTTA -TTT- TTTTA TCAAA CTCTA TTTTCA TTCTA -TTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA
* *
1783352 TTTTA TTTTA ATTAA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1783381 TCTCTGAACA
Statistics
Matches: 95, Mismatches: 23, Indels: 11
0.74 0.18 0.09
Matches are distributed among these distances:
4 9 0.09
5 74 0.78
6 12 0.13
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:1785363 original size:12 final size:12
Alignment explanation
Indices: 1785322--1785363 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1785312 TAGGTTTTAG
* *
1785322 TATTTTAATTAG
1 TATTTTAAATAT
1785334 TA-TTTAGAATAT
1 TATTTTA-AATAT
1785346 TATTTTAAATAT
1 TATTTTAAATAT
1785358 TATTTT
1 TATTTT
1785364 TTAGGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 4 0.15
12 18 0.69
13 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (12 bp):
TATTTTAAATAT
Found at i:1786106 original size:7 final size:7
Alignment explanation
Indices: 1786094--1786151 Score: 50
Period size: 7 Copynumber: 8.1 Consensus size: 7
1786084 TCTTTACTAC
1786094 TATTATT
1 TATTATT
1786101 TATTATTT
1 TATTA-TT
1786109 TATTATT
1 TATTATT
*
1786116 T-TCCATT
1 TAT-TATT
1786123 T-TTATT
1 TATTATT
1786129 TATTA-T
1 TATTATT
1786135 TATTTATTT
1 TA-TTA-TT
1786144 TATTATT
1 TATTATT
1786151 T
1 T
1786152 TTTCTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 8 0.19
7 22 0.51
8 10 0.23
9 3 0.07
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:1786112 original size:15 final size:14
Alignment explanation
Indices: 1786096--1786154 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
1786086 TTTACTACTA
1786096 TTATTTATTATTTT
1 TTATTTATTATTTT
*
1786110 ATTATTT-TCCA-TTT
1 -TTATTTAT-TATTTT
*
1786124 TTATTTATTATTAT
1 TTATTTATTATTTT
1786138 TTATTTTATTATTTT
1 TTA-TTTATTATTTT
1786153 TT
1 TT
1786155 CTTTTTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 7 0.19
14 10 0.28
15 19 0.53
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (14 bp):
TTATTTATTATTTT
Found at i:1786142 original size:35 final size:36
Alignment explanation
Indices: 1786094--1786187 Score: 111
Period size: 38 Copynumber: 2.6 Consensus size: 36
1786084 TCTTTACTAC
*
1786094 TATTATT-TATTATTTTATTATTTTCCATTTTT-ATT
1 TATTATTAT-TTATTTTATTATTTTCCATTTTTAAAT
* *
1786129 TATTATTATTTATTTTATTATTTTTTCTTTTTTAAAAT
1 TATTATTATTTATTTTATTA-TTTTCCATTTTT-AAAT
*
1786167 TATAATTATTTATTTTATTAT
1 TATTATTATTTATTTTATTAT
1786188 ATTATATCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
35 18 0.35
36 11 0.22
37 1 0.02
38 21 0.41
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (36 bp):
TATTATTATTTATTTTATTATTTTCCATTTTTAAAT
Found at i:1786205 original size:38 final size:38
Alignment explanation
Indices: 1786128--1786205 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
1786118 CCATTTTTAT
* * * * *
1786128 TTATTATTATTTATTTTATTATTTTTTCTTTTTTAAAA
1 TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
*
1786166 TTATAATTATTTATTTTATTATATTATATCTTTTCAAA
1 TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
1786204 TT
1 TT
1786206 CATCTGGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (38 bp):
TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
Found at i:1787749 original size:21 final size:21
Alignment explanation
Indices: 1787723--1787776 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1787713 TTTCACAGTG
1787723 GTTTCAAAACCCCCTCAAGTA
1 GTTTCAAAACCCCCTCAAGTA
* * *
1787744 GTTTCAAAACCCCCTTATGTT
1 GTTTCAAAACCCCCTCAAGTA
1787765 GTTTCAAAACCC
1 GTTTCAAAACCC
1787777 ATGCCTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (21 bp):
GTTTCAAAACCCCCTCAAGTA
Found at i:1788847 original size:38 final size:37
Alignment explanation
Indices: 1788798--1788889 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 37
1788788 GTCTAGCAGC
* *
1788798 TGCATTTTGGCATTTCGGTGCATT-TCGTAGCATTTTAG
1 TGCATTGTGGCATTT-GGTGCATTAT-GTAGCACTTTAG
* *
1788836 TGTATTGTGGCACTTTGGTGCATTATGTAGCACTTTGG
1 TGCATTGTGGCA-TTTGGTGCATTATGTAGCACTTTAG
1788874 TGCATTGTGGGCATTT
1 TGCATTGT-GGCATTT
1788890 TTGCCGTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
38 38 0.83
39 8 0.17
ACGTcount: A:0.15, C:0.14, G:0.27, T:0.43
Consensus pattern (37 bp):
TGCATTGTGGCATTTGGTGCATTATGTAGCACTTTAG
Found at i:1792207 original size:27 final size:27
Alignment explanation
Indices: 1792163--1792217 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
1792153 ATCATATATT
* *
1792163 TTTTAATATTCTAAATTAAAATGATAA
1 TTTTAATATTCAAAATTAAAAGGATAA
*
1792190 TTTTAA-ATTCAAATATTAATAGGATAA
1 TTTTAATATTCAAA-ATTAAAAGGATAA
1792217 T
1 T
1792218 GACATGCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (27 bp):
TTTTAATATTCAAAATTAAAAGGATAA
Found at i:1794403 original size:15 final size:15
Alignment explanation
Indices: 1794383--1794428 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
1794373 CCTTGGCATG
*
1794383 GAGTTCATCATCTTC
1 GAGTTCATCTTCTTC
*
1794398 GAGTTCGTCTTCTTC
1 GAGTTCATCTTCTTC
*
1794413 AAGTTCATCTTCTTC
1 GAGTTCATCTTCTTC
1794428 G
1 G
1794429 GACATATCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.43
Consensus pattern (15 bp):
GAGTTCATCTTCTTC
Found at i:1794901 original size:2 final size:2
Alignment explanation
Indices: 1794894--1794918 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1794884 GTTTTCTTTG
1794894 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1794919 GATCTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1795839 original size:17 final size:17
Alignment explanation
Indices: 1795817--1795850 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1795807 TTCCAGTAAG
* *
1795817 CTATTTTGGTACTGATA
1 CTATTTTAGTACCGATA
1795834 CTATTTTAGTACCGATA
1 CTATTTTAGTACCGATA
1795851 ATACTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (17 bp):
CTATTTTAGTACCGATA
Found at i:1799978 original size:18 final size:18
Alignment explanation
Indices: 1799955--1799997 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
1799945 CTTTAAATTA
**
1799955 TTTATTTAATTATTTTCT
1 TTTATTTAATTATGATCT
*
1799973 TTTATTTAATTCTGATCT
1 TTTATTTAATTATGATCT
1799991 TTTATTT
1 TTTATTT
1799998 TAAAAACAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTATTTAATTATGATCT
Found at i:1800083 original size:17 final size:18
Alignment explanation
Indices: 1800049--1800088 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
1800039 TAGTTATTAT
1800049 TTTATTATTTTCCCTTTTTA
1 TTTATTATTTT--CTTTTTA
1800069 TTTATTATTTT-TTTTTA
1 TTTATTATTTTCTTTTTA
1800086 TTT
1 TTT
1800089 TTTTAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
20 11 0.55
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTATTTTCTTTTTA
Found at i:1805620 original size:5 final size:5
Alignment explanation
Indices: 1805612--1805729 Score: 80
Period size: 5 Copynumber: 23.8 Consensus size: 5
1805602 CATTCTATTT
* * * *
1805612 TTTTA TTTTA TTTTA TTTCA TTTTA TTTTA TTTTTG TTTTA TTTCA TTTCA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
* * *** *** *
1805663 TTTCA TTTCA -TTT- TTTTA TCAAA CCCTA TTTTCA TTATA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA
1805711 TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
1805730 TCTCTGAACA
Statistics
Matches: 91, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
4 8 0.09
5 75 0.82
6 8 0.09
ACGTcount: A:0.20, C:0.08, G:0.01, T:0.70
Consensus pattern (5 bp):
TTTTA
Found at i:1805636 original size:15 final size:15
Alignment explanation
Indices: 1805598--1805729 Score: 82
Period size: 15 Copynumber: 9.0 Consensus size: 15
1805588 GAGGCAACCC
*
1805598 ATTTCATTCTATTTT
1 ATTTCATTTTATTTT
1805613 -TTT-ATTTTATTTT
1 ATTTCATTTTATTTT
1805626 ATTTCATTTTATTTT
1 ATTTCATTTTATTTT
*
1805641 A--T--TTTTGTTTT
1 ATTTCATTTTATTTT
* *
1805652 ATTTCATTTCATTTC
1 ATTTCATTTTATTTT
1805667 ATTTCATTTT-TTTAT
1 ATTTCATTTTATTT-T
*** *
1805682 CAAACCCTATTTTCATTAT
1 --ATTTC-ATTTT-ATTTT
1805701 ATTT-ATTTTATTTT
1 ATTTCATTTTATTTT
*
1805715 ATTTTATTTTATTTT
1 ATTTCATTTTATTTT
1805730 TCTCTGAACA
Statistics
Matches: 89, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
11 9 0.10
13 11 0.12
14 17 0.19
15 41 0.46
17 3 0.03
18 5 0.06
19 1 0.01
20 2 0.02
ACGTcount: A:0.20, C:0.09, G:0.01, T:0.70
Consensus pattern (15 bp):
ATTTCATTTTATTTT
Found at i:1805651 original size:26 final size:26
Alignment explanation
Indices: 1805612--1805670 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
1805602 CATTCTATTT
*
1805612 TTTTA-TTTTATTTTATTTCATTTTA
1 TTTTATTTTTATTTTATTTCATTTCA
*
1805637 TTTTATTTTTGTTTTATTTCATTTCA
1 TTTTATTTTTATTTTATTTCATTTCA
*
1805663 TTTCATTT
1 TTTTATTT
1805671 CATTTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.75
Consensus pattern (26 bp):
TTTTATTTTTATTTTATTTCATTTCA
Found at i:1805652 original size:31 final size:31
Alignment explanation
Indices: 1805611--1805677 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
1805601 TCATTCTATT
* * *
1805611 TTTTTATTTTATTTTATTTCATTTTATTTTA
1 TTTTTATTTTATTTCATTTCATTTCATTTCA
*
1805642 TTTTTGTTTTATTTCATTTCATTTCATTTCA
1 TTTTTATTTTATTTCATTTCATTTCATTTCA
1805673 TTTTT
1 TTTTT
1805678 TTATCAAACC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.75
Consensus pattern (31 bp):
TTTTTATTTTATTTCATTTCATTTCATTTCA
Found at i:1807691 original size:12 final size:12
Alignment explanation
Indices: 1807676--1807703 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1807666 TTTAATTAGG
1807676 ATTTAAAATATT
1 ATTTAAAATATT
1807688 ATTTAAAATATT
1 ATTTAAAATATT
1807700 ATTT
1 ATTT
1807704 TTTAGGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTAAAATATT
Found at i:1808333 original size:18 final size:18
Alignment explanation
Indices: 1808310--1808348 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1808300 AGGCAAAGCT
*
1808310 TTTAATTATTTTCTTTTA
1 TTTAATTATTATCTTTTA
*
1808328 TTTAATTCTTATCTTTTA
1 TTTAATTATTATCTTTTA
1808346 TTT
1 TTT
1808349 TAAAAACAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTAATTATTATCTTTTA
Found at i:1808426 original size:20 final size:18
Alignment explanation
Indices: 1808400--1808449 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
1808390 TTATTTATTA
1808400 TTTTATTATTTTCCATTTT
1 TTTTATTATTTT-CATTTT
*
1808419 TATTTATTATTATTTATTTT
1 T-TTTATTATT-TTCATTTT
1808439 TTTTATT-TTTT
1 TTTTATTATTTT
1808450 TAAGTTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 2 0.07
18 2 0.07
19 7 0.25
20 15 0.54
21 2 0.07
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTATTTTCATTTT
Found at i:1808464 original size:38 final size:38
Alignment explanation
Indices: 1808385--1808490 Score: 101
Period size: 38 Copynumber: 2.8 Consensus size: 38
1808375 TTATCTTTAC
* * * *
1808385 TATTATTATTTATTATTTTATTATTTTCCATTTTTATT
1 TATTATTATTTATTATTTTATTATTTTCAAGTTATAAT
* *
1808423 TATTATTATTTATTTTTTTTATT-TTTTTAAGTTATAAT
1 TATTATTATTTA-TTATTTTATTATTTTCAAGTTATAAT
*
1808461 TA-T-TTATTTTATTATATTATATATTTTCAA
1 TATTATTA-TTTATTATTTTAT-TATTTTCAA
1808491 CTTCATCTGG
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
36 10 0.18
37 6 0.11
38 30 0.55
39 9 0.16
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (38 bp):
TATTATTATTTATTATTTTATTATTTTCAAGTTATAAT
Found at i:1808480 original size:23 final size:22
Alignment explanation
Indices: 1808374--1808486 Score: 67
Period size: 23 Copynumber: 5.1 Consensus size: 22
1808364 AAAACTGTTT
*
1808374 TTTATCTTTACTATTATTAT-TTA
1 TTTAT-TTTATTA-TATTATATTA
* **
1808397 -TTATTTTATTATTTTCCATT-
1 TTTATTTTATTATATTATATTA
* *
1808417 TTTA-TTTATTATTATTTATTTTT
1 TTTATTTTATTA-TA-TTATATTA
*
1808440 TTTATTTTTTTA-AGTTATAATTA
1 TTTATTTTATTATA-TTAT-ATTA
1808463 TTTATTTTATTATATTATA-TA
1 TTTATTTTATTATATTATATTA
1808484 TTT
1 TTT
1808487 TCAACTTCAT
Statistics
Matches: 69, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
20 10 0.14
21 17 0.25
22 14 0.20
23 21 0.30
24 7 0.10
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.70
Consensus pattern (22 bp):
TTTATTTTATTATATTATATTA
Found at i:1809385 original size:21 final size:21
Alignment explanation
Indices: 1809359--1809412 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1809349 TTTCACAGTG
1809359 GTTTCAAAACCCCCTCAAGTA
1 GTTTCAAAACCCCCTCAAGTA
* * *
1809380 GTTTCAAAACCCCCTTATGTT
1 GTTTCAAAACCCCCTCAAGTA
1809401 GTTTCAAAACCC
1 GTTTCAAAACCC
1809413 GTGCCTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (21 bp):
GTTTCAAAACCCCCTCAAGTA
Found at i:1815001 original size:38 final size:37
Alignment explanation
Indices: 1814952--1815043 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 37
1814942 GTCTAGCAGC
* *
1814952 TGCATTTTGGCATTTCGGTGCATT-TCGTAGCATTTTAG
1 TGCATTGTGGCATTT-GGTGCATTAT-GTAGCACTTTAG
* *
1814990 TGTATTGTGGCACTTTGGTGCATTATGTAGCACTTTGG
1 TGCATTGTGGCA-TTTGGTGCATTATGTAGCACTTTAG
1815028 TGCATTGTGGGCATTT
1 TGCATTGT-GGCATTT
1815044 TTGCCGTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
38 38 0.83
39 8 0.17
ACGTcount: A:0.15, C:0.14, G:0.27, T:0.43
Consensus pattern (37 bp):
TGCATTGTGGCATTTGGTGCATTATGTAGCACTTTAG
Found at i:1823178 original size:20 final size:19
Alignment explanation
Indices: 1823137--1823197 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 19
1823127 GTATAGAGAA
*
1823137 TGCA-TTATAGCA-TTTCAA
1 TGCATTTATAGCACTTT-AG
1823155 TGCATTCTATAGCACTTTAG
1 TGCATT-TATAGCACTTTAG
* *
1823175 TGCA-TTATGGCACTTCAG
1 TGCATTTATAGCACTTTAG
1823193 TGCAT
1 TGCAT
1823198 AATGTAGCAC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 19 0.53
19 2 0.06
20 12 0.33
21 3 0.08
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (19 bp):
TGCATTTATAGCACTTTAG
Found at i:1824099 original size:2 final size:2
Alignment explanation
Indices: 1824094--1824123 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1824084 CAAAAAAATA
1824094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1824124 CTGTAGGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1825562 original size:18 final size:19
Alignment explanation
Indices: 1825541--1825578 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
1825531 ATATTTTATC
1825541 TTTTAATTTTT-AATATTT
1 TTTTAATTTTTCAATATTT
*
1825559 TTTTTATTTTTCAATATTT
1 TTTTAATTTTTCAATATTT
1825578 T
1 T
1825579 AGTTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTAATTTTTCAATATTT
Found at i:1825569 original size:19 final size:19
Alignment explanation
Indices: 1825541--1825578 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1825531 ATATTTTATC
*
1825541 TTTTAATTTTTAATATTTT
1 TTTTAATTTTCAATATTTT
*
1825560 TTTTATTTTTCAATATTTT
1 TTTTAATTTTCAATATTTT
1825579 AGTTTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTAATTTTCAATATTTT
Found at i:1825578 original size:15 final size:14
Alignment explanation
Indices: 1825531--1825595 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
1825521 ATAATTAATG
1825531 ATATTTTATCTTTTA
1 ATATTTTAT-TTTTA
*
1825546 AT-TTTTAATATTT-
1 ATATTTT-ATTTTTA
1825559 -T-TTTTATTTTTCA
1 ATATTTTATTTTT-A
1825572 ATATTTTAGTTTTTA
1 ATATTTTA-TTTTTA
1825587 ATATTTTAT
1 ATATTTTAT
1825596 GGTCGCATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
11 5 0.12
12 5 0.12
14 9 0.21
15 18 0.43
16 5 0.12
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (14 bp):
ATATTTTATTTTTA
Found at i:1826769 original size:20 final size:20
Alignment explanation
Indices: 1826744--1826792 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
1826734 TTATATATTT
1826744 TCGGGTTGGGTTGAATTAGA
1 TCGGGTTGGGTTGAATTAGA
1826764 TCGGGTTGGGTTGAATTAGA
1 TCGGGTTGGGTTGAATTAGA
1826784 TCGGGTTGG
1 TCGGGTTGG
1826793 CCAAAACTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.16, C:0.06, G:0.43, T:0.35
Consensus pattern (20 bp):
TCGGGTTGGGTTGAATTAGA
Found at i:1826895 original size:2 final size:2
Alignment explanation
Indices: 1826888--1826919 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1826878 TCATAAGATC
1826888 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1826920 CACGAAACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1828855 original size:43 final size:43
Alignment explanation
Indices: 1828801--1829133 Score: 472
Period size: 43 Copynumber: 7.7 Consensus size: 43
1828791 TAAAAAAGGC
* *
1828801 AAGGTCTTACCCTTGCACATAACAAAAGAACCTGGGGAAACTGT
1 AAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
1828845 AAGGCTTACCCTTGCACACAACAAAGGAA-CTGGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
* * *
1828887 AAGGCTTACCCTTGCACATAGA-AAATGAACCTGGGGAAACTCT
1 AAGGCTTACCCTTGCACACA-ACAAAGGAACCTGGGGAAACTGT
**
1828930 AAGGCTTACCCTTGCACACAACAAAAAAACCTGGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
* *
1828973 AAGGCTTACCCTTGCACACAACAAAGGAACCTAGGGAAAATGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
**
1829016 AAGGCTTACCCTTGCACACAGTAAAGGAACCTGGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
* * * **
1829059 AAGGCTTACCCCTACACATAGTAAAGGAACCTGGGGAAACTGT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
* *
1829102 AAAGCTTACCCTTGCACACAGCAAAGGAACCT
1 AAGGCTTACCCTTGCACACAACAAAGGAACCT
1829134 TTACAAAAAT
Statistics
Matches: 261, Mismatches: 25, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
42 39 0.15
43 218 0.84
44 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.18
Consensus pattern (43 bp):
AAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGT
Found at i:1833393 original size:43 final size:43
Alignment explanation
Indices: 1833326--1833494 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
1833316 AAGCATGTAA
* * * *
1833326 AAACGGTAAGGTCTTACCCTTGCACATAGCAAAAAAACCTAGGG
1 AAACTGTAAGG-CTTACCCTTGCACACAACAAAAAAACCTGGGG
* * * * ** *
1833370 AAATTGTCAGGCCTACCTTTGCACACAACAAAGGAACATGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAAAAACCTGGGG
* * **
1833413 AAACCGTAAGGCTTACCCTTGCACATAGA-AAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACA-ACAAAAAAACCTGGGG
*
1833456 AAACTGTAAGGCTTACCCTTGCACACAACAAAGAAACCT
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAAAAACCT
1833495 TTATACAAAA
Statistics
Matches: 102, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 92 0.90
44 9 0.09
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (43 bp):
AAACTGTAAGGCTTACCCTTGCACACAACAAAAAAACCTGGGG
Found at i:1833440 original size:86 final size:87
Alignment explanation
Indices: 1833326--1833488 Score: 240
Period size: 86 Copynumber: 1.9 Consensus size: 87
1833316 AAGCATGTAA
* * * *
1833326 AAACGGTAAGGTCTTACCCTTGCACATAGCAAAA-AAACCTAGGGAAATTGTCAGGCCTACCTTT
1 AAACCGTAAGGTCTTACCCTTGCACATAG-AAAAGAAACCTAGGGAAACTGTAAGGCCTACCCTT
1833390 GCACACAACAAAGGAACATGGGG
65 GCACACAACAAAGGAACATGGGG
* * *
1833413 AAACCGTAAGG-CTTACCCTTGCACATAGAAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTG
1 AAACCGTAAGGTCTTACCCTTGCACATAGAAAAGAAACCTAGGGAAACTGTAAGGCCTACCCTTG
1833477 CACACAACAAAG
66 CACACAACAAAG
1833489 AAACCTTTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 4 0.06
86 54 0.79
87 10 0.15
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (87 bp):
AAACCGTAAGGTCTTACCCTTGCACATAGAAAAGAAACCTAGGGAAACTGTAAGGCCTACCCTTG
CACACAACAAAGGAACATGGGG
Found at i:1836768 original size:28 final size:28
Alignment explanation
Indices: 1836728--1836784 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
1836718 TCATACAACT
1836728 CATATATGTCCCGAAGGACCACGTAGAA
1 CATATATGTCCCGAAGGACCACGTAGAA
1836756 CATATATGTCCCGAAGGACCACGTAGAA
1 CATATATGTCCCGAAGGACCACGTAGAA
1836784 C
1 C
1836785 CCTCGACTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (28 bp):
CATATATGTCCCGAAGGACCACGTAGAA
Found at i:1840874 original size:20 final size:19
Alignment explanation
Indices: 1840849--1840889 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
1840839 AGATATATTA
*
1840849 AATATTTATTTTCATTGTTT
1 AATATTAATTTTCATT-TTT
*
1840869 AATATTAATTTTGATTTTT
1 AATATTAATTTTCATTTTT
1840888 AA
1 AA
1840890 CTCATGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (19 bp):
AATATTAATTTTCATTTTT
Found at i:1847132 original size:23 final size:23
Alignment explanation
Indices: 1847106--1847176 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
1847096 GTTTCTATAC
1847106 GGTCTTTCGGGACAATTCTATGT
1 GGTCTTTCGGGACAATTCTATGT
* * * *
1847129 GGTC-ATCTGGGATAATTCTACGC
1 GGTCTTTC-GGGACAATTCTATGT
*
1847152 GGTCCTTT-GGGACAAATCTATGT
1 GGT-CTTTCGGGACAATTCTATGT
1847175 GG
1 GG
1847177 CACTTCGCTG
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
22 2 0.06
23 32 0.89
24 1 0.03
25 1 0.03
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (23 bp):
GGTCTTTCGGGACAATTCTATGT
Found at i:1851678 original size:14 final size:14
Alignment explanation
Indices: 1851659--1851712 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
1851649 AACATATTAC
1851659 TAAAATAAATAAA-A
1 TAAAATAAA-AAATA
1851673 TAAAATAAAAAATA
1 TAAAATAAAAAATA
*
1851687 TTAAATAAAAACATCA
1 TAAAATAAAAA-AT-A
1851703 CTAAAATAAA
1 -TAAAATAAA
1851713 TCATGCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 3 0.09
14 20 0.59
15 2 0.06
16 1 0.03
17 8 0.24
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAATAAAAAATA
Found at i:1856058 original size:50 final size:50
Alignment explanation
Indices: 1855960--1856069 Score: 116
Period size: 50 Copynumber: 2.2 Consensus size: 50
1855950 TATCCCCGTC
** * *
1855960 ATGTTTCTATTTGGGATCATCTTCGGAGGGCTACATCCTTATTCTGATTT
1 ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTACATCCCTATTCTGATTT
* *
1856010 ATGTTTCTGGTTGGGACCCTCTTCGGAGGG-TATTATCCCTA-TCTTGATTT
1 ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTA-CATCCCTATTC-TGATTT
*
1856060 CTGTATTCTG
1 ATGT-TTCTG
1856070 ATTTGGTTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
49 4 0.08
50 41 0.82
51 5 0.10
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (50 bp):
ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTACATCCCTATTCTGATTT
Found at i:1856713 original size:27 final size:27
Alignment explanation
Indices: 1856669--1856723 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
1856659 ATCATATATT
* *
1856669 TTTTAATATTCTAAATTAAAATGATAA
1 TTTTAATATTCAAAATTAAAAGGATAA
*
1856696 TTTTAA-ATTCAAATATTAATAGGATAA
1 TTTTAATATTCAAA-ATTAAAAGGATAA
1856723 T
1 T
1856724 GACATGCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (27 bp):
TTTTAATATTCAAAATTAAAAGGATAA
Found at i:1858908 original size:15 final size:15
Alignment explanation
Indices: 1858888--1858933 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
1858878 CCTTGGCATG
*
1858888 GAGTTCATCATCTTC
1 GAGTTCATCTTCTTC
*
1858903 GAGTTCGTCTTCTTC
1 GAGTTCATCTTCTTC
*
1858918 AAGTTCATCTTCTTC
1 GAGTTCATCTTCTTC
1858933 G
1 G
1858934 GACATATCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.43
Consensus pattern (15 bp):
GAGTTCATCTTCTTC
Found at i:1859407 original size:2 final size:2
Alignment explanation
Indices: 1859400--1859428 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1859390 GTTTTCTTTG
1859400 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1859429 GATCTAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1860347 original size:17 final size:17
Alignment explanation
Indices: 1860325--1860358 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1860315 TTCCAGTAAG
* *
1860325 CTATTTTGGTACTGATA
1 CTATTTTAGTACCGATA
1860342 CTATTTTAGTACCGATA
1 CTATTTTAGTACCGATA
1860359 ATACTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (17 bp):
CTATTTTAGTACCGATA
Found at i:1864490 original size:18 final size:18
Alignment explanation
Indices: 1864467--1864509 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1864457 CTTTAAATTA
*
1864467 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
*
1864485 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
1864503 TTTATTT
1 TTTATTT
1864510 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:1864616 original size:38 final size:42
Alignment explanation
Indices: 1864554--1864641 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 42
1864544 CTACTATTAG
1864554 TTATTATTTTATTATTTCCCTTTTT-ATT-T-ATTA-TTATT
1 TTATTATTTTATTATTTCCCTTTTTAATTATAATTATTTATT
* * **
1864592 TTATTATTTTTTTTTTTCTTTTTTTAAATTATAATTATTTATT
1 TTATTATTTTATTATTTCCCTTTTT-AATTATAATTATTTATT
1864635 TTATTAT
1 TTATTAT
1864642 ATCTTTTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
38 21 0.51
40 3 0.07
41 1 0.02
42 4 0.10
43 12 0.29
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (42 bp):
TTATTATTTTATTATTTCCCTTTTTAATTATAATTATTTATT
Found at i:1870162 original size:5 final size:5
Alignment explanation
Indices: 1870138--1870247 Score: 75
Period size: 5 Copynumber: 22.2 Consensus size: 5
1870128 CATTTCATTC
* * *
1870138 TATTT T-TTT TAATTT TATTT CATTT TATTT TATTTT TGTTT TATTT CATTT
1 TATTT TATTT T-ATTT TATTT TATTT TATTT TA-TTT TATTT TATTT TATTT
* ** * * * *
1870189 CA-TT T-TTT TATCA AACTC TATTT TCATTA TA-TT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT T-ATTT TATTT TATTT TATTT TATTT
1870237 TATTT TATTT T
1 TATTT TATTT T
1870248 TCTCTGAACA
Statistics
Matches: 81, Mismatches: 17, Indels: 14
0.72 0.15 0.12
Matches are distributed among these distances:
4 12 0.15
5 57 0.70
6 12 0.15
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.72
Consensus pattern (5 bp):
TATTT
Found at i:1872235 original size:12 final size:12
Alignment explanation
Indices: 1872194--1872235 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1872184 TAGGTTTTAG
* *
1872194 TATTTTAATTAG
1 TATTTTAAATAT
1872206 TA-TTTAGAATAT
1 TATTTTA-AATAT
1872218 TATTTTAAATAT
1 TATTTTAAATAT
1872230 TATTTT
1 TATTTT
1872236 TTAGGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 4 0.15
12 18 0.69
13 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (12 bp):
TATTTTAAATAT
Found at i:1872979 original size:7 final size:7
Alignment explanation
Indices: 1872967--1873024 Score: 50
Period size: 7 Copynumber: 8.1 Consensus size: 7
1872957 TCTTTACTAC
1872967 TATTATT
1 TATTATT
1872974 TATTATTT
1 TATTA-TT
1872982 TATTATT
1 TATTATT
*
1872989 T-TCCATT
1 TAT-TATT
1872996 T-TTATT
1 TATTATT
1873002 TATTA-T
1 TATTATT
1873008 TATTTATTT
1 TA-TTA-TT
1873017 TATTATT
1 TATTATT
1873024 T
1 T
1873025 TTTCTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 8 0.19
7 22 0.51
8 10 0.23
9 3 0.07
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:1872985 original size:15 final size:14
Alignment explanation
Indices: 1872969--1873027 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
1872959 TTTACTACTA
1872969 TTATTTATTATTTT
1 TTATTTATTATTTT
*
1872983 ATTATTT-TCCA-TTT
1 -TTATTTAT-TATTTT
*
1872997 TTATTTATTATTAT
1 TTATTTATTATTTT
1873011 TTATTTTATTATTTT
1 TTA-TTTATTATTTT
1873026 TT
1 TT
1873028 CTTTTTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 7 0.19
14 10 0.28
15 19 0.53
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (14 bp):
TTATTTATTATTTT
Found at i:1873015 original size:35 final size:36
Alignment explanation
Indices: 1872967--1873060 Score: 111
Period size: 38 Copynumber: 2.6 Consensus size: 36
1872957 TCTTTACTAC
*
1872967 TATTATT-TATTATTTTATTATTTTCCATTTTT-ATT
1 TATTATTAT-TTATTTTATTATTTTCCATTTTTAAAT
* *
1873002 TATTATTATTTATTTTATTATTTTTTCTTTTTTAAAAT
1 TATTATTATTTATTTTATTA-TTTTCCATTTTT-AAAT
*
1873040 TATAATTATTTATTTTATTAT
1 TATTATTATTTATTTTATTAT
1873061 ATTATATCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
35 18 0.35
36 11 0.22
37 1 0.02
38 21 0.41
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (36 bp):
TATTATTATTTATTTTATTATTTTCCATTTTTAAAT
Found at i:1873078 original size:38 final size:38
Alignment explanation
Indices: 1873001--1873078 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
1872991 CCATTTTTAT
* * * * *
1873001 TTATTATTATTTATTTTATTATTTTTTCTTTTTTAAAA
1 TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
*
1873039 TTATAATTATTTATTTTATTATATTATATCTTTTCAAA
1 TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
1873077 TT
1 TT
1873079 CATCTGGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (38 bp):
TTATAATTATTTATTTTATTATATTATATCTTTTAAAA
Found at i:1874622 original size:21 final size:21
Alignment explanation
Indices: 1874596--1874649 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1874586 TTTCACAGTG
1874596 GTTTCAAAACCCCCTCAAGTA
1 GTTTCAAAACCCCCTCAAGTA
* * *
1874617 GTTTCAAAACCCCCTTATGTT
1 GTTTCAAAACCCCCTCAAGTA
1874638 GTTTCAAAACCC
1 GTTTCAAAACCC
1874650 ATGCCTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (21 bp):
GTTTCAAAACCCCCTCAAGTA
Found at i:1875725 original size:38 final size:37
Alignment explanation
Indices: 1875676--1875767 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 37
1875666 GTCTAGCAGC
* *
1875676 TGCATTTTGGCATTTCGGTGCATT-TCGTAGCATTTTAG
1 TGCATTGTGGCATTT-GGTGCATTAT-GTAGCACTTTAG
* *
1875714 TGTATTGTGGCACTTTGGTGCATTATGTAGCACTTTGG
1 TGCATTGTGGCA-TTTGGTGCATTATGTAGCACTTTAG
1875752 TGCATTGTGGGCATTT
1 TGCATTGT-GGCATTT
1875768 ATGCCGTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
38 38 0.83
39 8 0.17
ACGTcount: A:0.15, C:0.14, G:0.27, T:0.43
Consensus pattern (37 bp):
TGCATTGTGGCATTTGGTGCATTATGTAGCACTTTAG
Found at i:1878022 original size:43 final size:43
Alignment explanation
Indices: 1877961--1878296 Score: 510
Period size: 43 Copynumber: 7.8 Consensus size: 43
1877951 TGTAAAAAAG
* * *
1877961 GTAAGGTCTTACCCTTGCACATAACAAAAGAACCTGGGGAAACT
1 GTAAGG-CTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
1878005 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* *
1878048 GTAAGGCTTACCCTTGCACATAGCAAATGAACCTGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* * *
1878091 GTAAGGCTTACCCTTGCACACAACAAAAGAACCTGGGGATACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* *
1878134 GTAAGGCTTACCCTTGCACACAACAAAGGAACCTAGGGAAACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* *
1878177 GTAAGGCTTACCCTTGTACACAGTAAAGGAACCTGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* * *
1878220 GTAAGGCTTACCCCTGCACATAGTAAAGGAACCTGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
* *
1878263 GTAAAGCTTAACCTTGCACACAGCAAAGGAACCT
1 GTAAGGCTTACCCTTGCACACAGCAAAGGAACCT
1878297 TTATACAAAA
Statistics
Matches: 268, Mismatches: 24, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
43 262 0.98
44 6 0.02
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (43 bp):
GTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAACT
Found at i:1882680 original size:43 final size:43
Alignment explanation
Indices: 1882622--1882785 Score: 211
Period size: 43 Copynumber: 3.8 Consensus size: 43
1882612 TGTAAAAATG
* * * *
1882622 GTAAGGTCTTACCCTTGCACATAACAAAAAAACCTAGGGAAATT
1 GTAAGG-CTTACCCTTGCACACAACAAAGAAACCTGGGGAAACT
* * * *
1882666 GTTAGGCCTACCCTTGCACACAACAAAGGAACATGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAACAAAGAAACCTGGGGAAACT
* * *
1882709 GTAAGGCTTACCCTTGCACATAGCAAAGGAACCTGGGGAAACT
1 GTAAGGCTTACCCTTGCACACAACAAAGAAACCTGGGGAAACT
*
1882752 GTAAGGCTTACCCTTGCACACAGCAAAGAAACCT
1 GTAAGGCTTACCCTTGCACACAACAAAGAAACCT
1882786 TTATACAAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 100 0.95
44 5 0.05
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (43 bp):
GTAAGGCTTACCCTTGCACACAACAAAGAAACCTGGGGAAACT
Found at i:1886085 original size:28 final size:28
Alignment explanation
Indices: 1886038--1886094 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
1886028 TCATACAACT
* *
1886038 CATATATGTCCTGAAGGACCACGTAGAA
1 CATATATGTCCCGAAAGACCACGTAGAA
1886066 CATATATGTCCCGAAAGACCACGTAGAA
1 CATATATGTCCCGAAAGACCACGTAGAA
1886094 C
1 C
1886095 CCTCGACTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (28 bp):
CATATATGTCCCGAAAGACCACGTAGAA
Found at i:1890337 original size:18 final size:18
Alignment explanation
Indices: 1890296--1890337 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1890286 ATGTTTATAA
1890296 TTATCAGATGATTTTCAG
1 TTATCAGATGATTTTCAG
** *
1890314 CGATCATATGATTTTCAG
1 TTATCAGATGATTTTCAG
1890332 TTATCA
1 TTATCA
1890338 AATAATTATA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (18 bp):
TTATCAGATGATTTTCAG
Found at i:1894936 original size:24 final size:24
Alignment explanation
Indices: 1894909--1894983 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
1894899 AATCTATGTA
1894909 GCACTTCGGTGCATATTCTACGTG
1 GCACTTCGGTGCATATTCTACGTG
* *
1894933 GCACCTCAGTGCATATTCTACGTG
1 GCACTTCGGTGCATATTCTACGTG
* *
1894957 GCACTTCGGTGCAAATTCTACGCG
1 GCACTTCGGTGCATATTCTACGTG
1894981 GCA
1 GCA
1894984 GTTTCGATTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (24 bp):
GCACTTCGGTGCATATTCTACGTG
Found at i:1895453 original size:20 final size:19
Alignment explanation
Indices: 1895428--1895468 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
1895418 AAATATATTA
*
1895428 AATATTTATTTTCATTGTTT
1 AATATTAATTTTCATT-TTT
*
1895448 AATATTAATTTTGATTTTT
1 AATATTAATTTTCATTTTT
1895467 AA
1 AA
1895469 CTCGTGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (19 bp):
AATATTAATTTTCATTTTT
Found at i:1896932 original size:20 final size:20
Alignment explanation
Indices: 1896907--1896946 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1896897 TTGAAATGCG
1896907 GGTGACTGCTCATGTATACA
1 GGTGACTGCTCATGTATACA
1896927 GGTGACTGCTCATGTATACA
1 GGTGACTGCTCATGTATACA
1896947 ACATTAAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (20 bp):
GGTGACTGCTCATGTATACA
Found at i:1902464 original size:18 final size:18
Alignment explanation
Indices: 1902423--1902464 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1902413 ATGTTTATAA
1902423 TTATCATATGATTTTCAG
1 TTATCATATGATTTTCAG
**
1902441 CGATCATATGATTTTCAG
1 TTATCATATGATTTTCAG
1902459 TTATCA
1 TTATCA
1902465 AATATTATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (18 bp):
TTATCATATGATTTTCAG
Found at i:1902652 original size:41 final size:41
Alignment explanation
Indices: 1902589--1902670 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
1902579 AAGTGAGTGC
* *
1902589 TTATCAGTTTAGCAATGATACATTCGTGTTTCAATGTTCAG
1 TTATCAGTTCAGCAATGATACATTCGTGTATCAATGTTCAG
** *
1902630 TTATCAGTTCAGCTTTGGTACATTCGTGTATCAATGTTCAG
1 TTATCAGTTCAGCAATGATACATTCGTGTATCAATGTTCAG
1902671 CACAGTAGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (41 bp):
TTATCAGTTCAGCAATGATACATTCGTGTATCAATGTTCAG
Found at i:1909054 original size:20 final size:19
Alignment explanation
Indices: 1909029--1909069 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
1909019 AGATATATTA
*
1909029 AATATTTATTTTCATTGTTT
1 AATATTAATTTTCATT-TTT
*
1909049 AATATTAATTTTGATTTTT
1 AATATTAATTTTCATTTTT
1909068 AA
1 AA
1909070 CTCGTGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (19 bp):
AATATTAATTTTCATTTTT
Found at i:1915151 original size:23 final size:22
Alignment explanation
Indices: 1915125--1915195 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
1915115 GTTTCTATAC
1915125 GGTCTTTCGGGACAATTCTATGT
1 GGTCTTT-GGGACAATTCTATGT
* * *
1915148 GGTCATTTGGGATAATTCTACGC
1 GGTC-TTTGGGACAATTCTATGT
*
1915171 GGTCCTTTGGGACAAATCTATGT
1 GGT-CTTTGGGACAATTCTATGT
1915194 GG
1 GG
1915196 CACTTCGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 35 0.90
24 4 0.10
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (22 bp):
GGTCTTTGGGACAATTCTATGT
Found at i:1919735 original size:17 final size:17
Alignment explanation
Indices: 1919715--1919756 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
1919705 AATATTATAT
1919715 ATAAAAACAT-CACTAAA
1 ATAAAAACATGCA-TAAA
*
1919732 AT-AAATCATGCATAAA
1 ATAAAAACATGCATAAA
1919748 ATAAAAACA
1 ATAAAAACA
1919757 AATATCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.64, C:0.14, G:0.02, T:0.19
Consensus pattern (17 bp):
ATAAAAACATGCATAAA
Found at i:1924080 original size:50 final size:50
Alignment explanation
Indices: 1923982--1924091 Score: 116
Period size: 50 Copynumber: 2.2 Consensus size: 50
1923972 TATCCCCGTC
** * *
1923982 ATGTTTCTATTTGGGATCATCTTCGGAGGGCTACATCCTTATTCTGATTT
1 ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTACATCCCTATTCTGATTT
* *
1924032 ATGTTTCTGGTTGGGACCCTCTTCGGAGGG-TATTATCCCTA-TCTTGATTT
1 ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTA-CATCCCTATTC-TGATTT
*
1924082 CTGTATTCTG
1 ATGT-TTCTG
1924092 ATTTGGTTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
49 4 0.08
50 41 0.82
51 5 0.10
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (50 bp):
ATGTTTCTGGTTGGGACCATCTTCGGAGGGCTACATCCCTATTCTGATTT
Found at i:1924735 original size:27 final size:27
Alignment explanation
Indices: 1924691--1924745 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
1924681 ATCATATATT
* *
1924691 TTTTAATATTCTAAATTAAAATGATAA
1 TTTTAATATTCAAAATTAAAAGGATAA
*
1924718 TTTTAA-ATTCAAATATTAATAGGATAA
1 TTTTAATATTCAAA-ATTAAAAGGATAA
1924745 T
1 T
1924746 GACATGCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (27 bp):
TTTTAATATTCAAAATTAAAAGGATAA
Found at i:1926927 original size:15 final size:15
Alignment explanation
Indices: 1926907--1926952 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
1926897 CCTTGGCATG
*
1926907 GAGTTCATCATCTTC
1 GAGTTCATCTTCTTC
*
1926922 GAGTTCGTCTTCTTC
1 GAGTTCATCTTCTTC
*
1926937 AAGTTCATCTTCTTC
1 GAGTTCATCTTCTTC
1926952 G
1 G
1926953 GACATATCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.43
Consensus pattern (15 bp):
GAGTTCATCTTCTTC
Found at i:1927426 original size:2 final size:2
Alignment explanation
Indices: 1927419--1927455 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1927409 GTTTTCTTTG
1927419 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1927456 GATCTAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1928375 original size:17 final size:17
Alignment explanation
Indices: 1928353--1928386 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1928343 TTCCAGTAAG
* *
1928353 CTATTTTGGTACTGATA
1 CTATTTTAGTACCGATA
1928370 CTATTTTAGTACCGATA
1 CTATTTTAGTACCGATA
1928387 ATACTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (17 bp):
CTATTTTAGTACCGATA
Found at i:1932505 original size:18 final size:18
Alignment explanation
Indices: 1932482--1932524 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1932472 CTTTAAATTA
*
1932482 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
*
1932500 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
1932518 TTTATTT
1 TTTATTT
1932525 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:1932582 original size:8 final size:8
Alignment explanation
Indices: 1932569--1932645 Score: 52
Period size: 8 Copynumber: 9.9 Consensus size: 8
1932559 CTACTATTAG
1932569 TTATTATT
1 TTATTATT
1932577 TTATTATT
1 TTATTATT
**
1932585 TTCCCT-TT
1 TT-ATTATT
*
1932593 TTATT-TA
1 TTATTATT
1932600 TTATTATT
1 TTATTATT
1932608 TTATTATT
1 TTATTATT
* **
1932616 TTTTTAAA
1 TTATTATT
*
1932624 TTATAATT
1 TTATTATT
*
1932632 AT-TTATT
1 TTATTATT
1932639 TTATTAT
1 TTATTAT
1932646 ATCTTTTCAA
Statistics
Matches: 50, Mismatches: 16, Indels: 6
0.69 0.22 0.08
Matches are distributed among these distances:
7 12 0.24
8 37 0.74
9 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (8 bp):
TTATTATT
Found at i:1932646 original size:18 final size:18
Alignment explanation
Indices: 1932593--1932646 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
1932583 TTTTCCCTTT
*
1932593 TTATTTATTATTATT-TTA
1 TTATTTATT-TTATTATAA
1932611 TTATTT-TTTTAAATTATAA
1 TTATTTATTTT--ATTATAA
1932630 TTATTTATTTTATTATA
1 TTATTTATTTTATTATA
1932647 TCTTTTCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 15 0.48
19 8 0.26
20 4 0.13
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTTATTTTATTATAA
Found at i:1935015 original size:18 final size:18
Alignment explanation
Indices: 1934992--1935034 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
1934982 TGACCTCATC
1934992 ATGTTGAAATAATTAATT
1 ATGTTGAAATAATTAATT
1935010 ATGTTGAAATAATTAATT
1 ATGTTGAAATAATTAATT
1935028 ATGTTGA
1 ATGTTGA
1935035 TATTATAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (18 bp):
ATGTTGAAATAATTAATT
Found at i:1945397 original size:18 final size:18
Alignment explanation
Indices: 1945374--1945434 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
1945364 GTATAGAGAA
1945374 TGCATTATAGCATTTCAG
1 TGCATTATAGCATTTCAG
1945392 TGCATTCTATAGCACTTT-AG
1 TGCA-T-TATAGCA-TTTCAG
* *
1945412 TGCATTATGGCACTTCAG
1 TGCATTATAGCATTTCAG
1945430 TGCAT
1 TGCAT
1945435 AATGTAGCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 2 0.05
18 17 0.46
19 2 0.05
20 13 0.35
21 3 0.08
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (18 bp):
TGCATTATAGCATTTCAG
Found at i:1946341 original size:2 final size:2
Alignment explanation
Indices: 1946336--1946369 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1946326 CAAAAAATTA
1946336 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1946370 GTAGGTGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1947811 original size:20 final size:22
Alignment explanation
Indices: 1947776--1947825 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
1947766 ATAATTAATG
*
1947776 ATATTTTATCTTTTATTTTTTA
1 ATATTTTATCTTTTATTTTTCA
1947798 ATATTTT-T-TTTTATTTTTCA
1 ATATTTTATCTTTTATTTTTCA
1947818 ATATTTTA
1 ATATTTTA
1947826 GTTTTTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.69
21 1 0.04
22 7 0.27
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (22 bp):
ATATTTTATCTTTTATTTTTCA
Found at i:1947824 original size:15 final size:14
Alignment explanation
Indices: 1947806--1947841 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
1947796 TAATATTTTT
1947806 TTTTATTTTTCAATA
1 TTTTATTTTT-AATA
1947821 TTTTAGTTTTTAATA
1 TTTTA-TTTTTAATA
1947836 TTTTAT
1 TTTTAT
1947842 GGTCGCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 14 0.70
16 5 0.25
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (14 bp):
TTTTATTTTTAATA
Done.