Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 49
Found at i:6756274 original size:37 final size:37
Alignment explanation
Indices: 6756198--6756274 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
6756188 TTTTTATATT
*
6756198 TTTAATTTTGTCAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTCAAAAAAATTATATAAATATTATCAA
* *
6756235 TTTAATTTT-TTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTCAAA-AAAATTATATAAATATTAT-CAA
6756272 TTT
1 TTT
6756275 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 17 0.49
37 18 0.51
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTCAAAAAAATTATATAAATATTATCAA
Found at i:6760312 original size:16 final size:16
Alignment explanation
Indices: 6760275--6760315 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
6760265 TGTTTTACCA
*
6760275 AAGTTTATGATTTACT
1 AAGTTTATGATCTACT
6760291 AA-TTTACTGATCTAC-
1 AAGTTTA-TGATCTACT
6760306 AAGTTTATGA
1 AAGTTTATGA
6760316 ACTATGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (16 bp):
AAGTTTATGATCTACT
Found at i:6760471 original size:96 final size:97
Alignment explanation
Indices: 6760308--6760503 Score: 297
Period size: 96 Copynumber: 2.0 Consensus size: 97
6760298 TGATCTACAA
* *
6760308 GTTTATGAACTATGGTTACCTAAAATGTGTTATCTGGTGTCTTGTTTTCACTGGAAAAATATAAT
1 GTTTATGAACTATGGTTACATAAAATGTGTTATCTGGTGTCCTGTTTTCACTGGAAAAATATAAT
* * *
6760373 CGTTCCTGATTTATGGATTATGTAATCTATTG
66 CGTTCCTGATTTATGGATCATGGAATCTAATG
* * *
6760405 GTTTATGAACTATGGTTA-ATGAAATGTGTTATTTGGTTTCCTGTTTTCACT-GAAAAATAATAA
1 GTTTATGAACTATGGTTACATAAAATGTGTTATCTGGTGTCCTGTTTTCACTGGAAAAAT-ATAA
6760468 TCGTTCCTGATTTATGGATCATGGAATCTAATG
65 TCGTTCCTGATTTATGGATCATGGAATCTAATG
6760501 GTT
1 GTT
6760504 CCTACATGAA
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
95 7 0.08
96 65 0.72
97 18 0.20
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (97 bp):
GTTTATGAACTATGGTTACATAAAATGTGTTATCTGGTGTCCTGTTTTCACTGGAAAAATATAAT
CGTTCCTGATTTATGGATCATGGAATCTAATG
Found at i:6764437 original size:24 final size:24
Alignment explanation
Indices: 6764410--6764473 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
6764400 AAACGGAGAT
* * *
6764410 ATCAGAAATCAAAACAGATTTCAG
1 ATCAGAAATCAGAACAGAATCCAG
*
6764434 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATCCAG
*
6764458 ATTAGAAATCAGAACA
1 ATCAGAAATCAGAACA
6764474 TAATTCAGGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATCCAG
Found at i:6769118 original size:24 final size:24
Alignment explanation
Indices: 6769091--6769161 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
6769081 AAACGGAGAT
*
6769091 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCAGAACAGAATTCAG
* *
6769115 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAG
6769139 ATCAGAAATCAGAACAGAATTCA
1 ATCAGAAATCAGAACAGAATTCA
6769162 TATAATGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.17
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATTCAG
Found at i:6769120 original size:12 final size:12
Alignment explanation
Indices: 6769093--6769161 Score: 68
Period size: 12 Copynumber: 5.8 Consensus size: 12
6769083 ACGGAGATAT
* *
6769093 CAGAAATCAAAA
1 CAGAATTCAGAA
*
6769105 CAGAATTCAGAT
1 CAGAATTCAGAA
6769117 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
6769129 CAGAATCCAGAT
1 CAGAATTCAGAA
*
6769141 CAGAAATCAGAA
1 CAGAATTCAGAA
6769153 CAGAATTCA
1 CAGAATTCA
6769162 TATAATGTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
11 2 0.04
12 41 0.91
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:6769173 original size:24 final size:24
Alignment explanation
Indices: 6769091--6769185 Score: 111
Period size: 24 Copynumber: 4.0 Consensus size: 24
6769081 AAACGGAGAT
* *
6769091 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGATATCAGAACAGAATTCAG
*
6769115 ATCAGATATCAGAACAGAATCCAG
1 ATCAGATATCAGAACAGAATTCAG
* *
6769139 ATCAGAAATCAGAACAGAATTCAT
1 ATCAGATATCAGAACAGAATTCAG
* *
6769163 ATAATG-TATCATAACAGAATTCA
1 ATCA-GATATCAGAACAGAATTCA
6769186 AGTCGGAACC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 60 0.98
25 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (24 bp):
ATCAGATATCAGAACAGAATTCAG
Found at i:6769173 original size:48 final size:48
Alignment explanation
Indices: 6769091--6769182 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
6769081 AAACGGAGAT
*
6769091 ATCAGAAATCAAAACAGAATTCAGATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAGATAAGATATCAGAACAGAATCCAG
* * *
6769139 ATCAGAAATCAGAACAGAATTCATATAATG-TATCATAACAGAAT
1 ATCAGAAATCAAAACAGAATTCAGATAA-GATATCAGAACAGAAT
6769183 TCAAGTCGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 38 0.97
49 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCAGATAAGATATCAGAACAGAATCCAG
Found at i:6769338 original size:12 final size:12
Alignment explanation
Indices: 6769309--6769369 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
6769299 AAACAGAGAT
* *
6769309 ATCAGAAATCAA
1 ATCAGAATTCAG
*
6769321 AACAGAATTCAG
1 ATCAGAATTCAG
6769333 ATCAG-ATATCAG
1 ATCAGAAT-TCAG
* *
6769345 AACAGAATCCAG
1 ATCAGAATTCAG
*
6769357 ATCAGAAATCAG
1 ATCAGAATTCAG
6769369 A
1 A
6769370 ACATAATTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
11 2 0.05
12 34 0.89
13 2 0.05
ACGTcount: A:0.51, C:0.18, G:0.15, T:0.16
Consensus pattern (12 bp):
ATCAGAATTCAG
Found at i:6769343 original size:24 final size:24
Alignment explanation
Indices: 6769309--6769417 Score: 105
Period size: 24 Copynumber: 4.5 Consensus size: 24
6769299 AAACAGAGAT
*
6769309 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCAGAACAGAATTCAG
* *
6769333 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAG
* *
6769357 ATCAGAAATCAGAACATAATTTAG
1 ATCAGAAATCAGAACAGAATTCAG
* * *
6769381 GTAATG-TATCAGAACAGAATTCA-
1 ATCA-GAAATCAGAACAGAATTCAG
*
6769404 AGTCGGAAATCAGA
1 A-TCAGAAATCAGA
6769418 TAAAATATTT
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
23 1 0.02
24 64 0.97
25 1 0.02
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATTCAG
Found at i:6769399 original size:218 final size:215
Alignment explanation
Indices: 6768975--6769411 Score: 766
Period size: 218 Copynumber: 2.0 Consensus size: 215
6768965 TAGGTTCCCT
*
6768975 GGAACCATACACCCCGCACAACCAGTAAGGCCCTGAGCACACAGCCGAGAAGGCTGCAGATAATC
1 GGAACCATACACCCCGCACAACCAGTAAGGCCCTGAGCACACAGCCGAGAAGCCTGCAGATAATC
* *
6769040 TTCCTCCAACAATAAACCCCCAGTTAAAACATTACGTCGGTAAACGGAGATATCAGAAATCAAAA
66 TTCCTCCAACAATAAACCCCCAGATAAAACATTACGTCGGTAAACAGAGATATCAGAAATCAAAA
*
6769105 CAGAATTCAGATCAGATATCAGAACAGAATCCAGATCAGAAATCAGAACAGAATTCATATAATGT
131 CAGAATTCAGATCAGATATCAGAACAGAATCCAGATCAGAAATCAGAACAGAATTCAGATAATGT
*
6769170 ATCATAACAGAATTCAAGTC
196 ATCAGAACAGAATTCAAGTC
6769190 GGAACCATACACCCCGCACAACCAGTAAGGCCCTGAGCACACAGCCGAGAAGCCTGCAGATAATC
1 GGAACCATACACCCCGCACAACCAGTAAGGCCCTGAGCACACAGCCGAGAAGCCTGCAGATAATC
*
6769255 TTCCTCCAACAATAAACCCCCAGATAAAACATTTCTCCGTCGGTAAACAGAGATATCAGAAATCA
66 TTCCTCCAACAATAAACCCCCAGATAAAACA--T-TACGTCGGTAAACAGAGATATCAGAAATCA
* * *
6769320 AAACAGAATTCAGATCAGATATCAGAACAGAATCCAGATCAGAAATCAGAACATAATTTAGGTAA
128 AAACAGAATTCAGATCAGATATCAGAACAGAATCCAGATCAGAAATCAGAACAGAATTCAGATAA
6769385 TGTATCAGAACAGAATTCAAGTC
193 TGTATCAGAACAGAATTCAAGTC
6769408 GGAA
1 GGAA
6769412 ATCAGATAAA
Statistics
Matches: 210, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
215 94 0.45
217 1 0.00
218 115 0.55
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (215 bp):
GGAACCATACACCCCGCACAACCAGTAAGGCCCTGAGCACACAGCCGAGAAGCCTGCAGATAATC
TTCCTCCAACAATAAACCCCCAGATAAAACATTACGTCGGTAAACAGAGATATCAGAAATCAAAA
CAGAATTCAGATCAGATATCAGAACAGAATCCAGATCAGAAATCAGAACAGAATTCAGATAATGT
ATCAGAACAGAATTCAAGTC
Found at i:6774015 original size:35 final size:35
Alignment explanation
Indices: 6773972--6774045 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
6773962 ATTTTCGGGA
*
6773972 TTTTGCTATTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTATTTTGGCAAAATTCGAATAAAGACGAT
6774007 TTTTGCTATTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTATTTTGGCAAAATTCGAATAAAGACGAT
6774042 TTTT
1 TTTT
6774046 TTAGCTAACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (35 bp):
TTTTGCTATTTTGGCAAAATTCGAATAAAGACGAT
Found at i:6781943 original size:2 final size:2
Alignment explanation
Indices: 6781936--6781983 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
6781926 AGATGCACTC
6781936 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6781976 TA TA TA TA
1 TA TA TA TA
6781984 AAAGGATCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6781962 original size:21 final size:21
Alignment explanation
Indices: 6781936--6781983 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
6781926 AGATGCACTC
6781936 TATATATAATATATATATATA
1 TATATATAATATATATATATA
6781957 TATATATAATATATATATATA
1 TATATATAATATATATATATA
6781978 TATATA
1 TATATA
6781984 AAAGGATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATATATAATATATATATATA
Found at i:6787105 original size:132 final size:132
Alignment explanation
Indices: 6786868--6787130 Score: 445
Period size: 132 Copynumber: 2.0 Consensus size: 132
6786858 TATGATACCC
* * * *
6786868 AAAACATCAATATTAATAAAGTTATAAGGTAAGAAAATATATGGACTGGTTAATGGTAGAGTTCA
1 AAAACAACAATATTAATAAACTTATAAGGGAAGAAAATATATGGACTGGTTAATGGTAGAGCTCA
*
6786933 ATTTCTACCAAAATGCAAGTCCTCTATTACTCCATACCACTTTGTTTAACCCCCTATTGTAAGAG
66 ATTTCTACCAAAATGCAAGTCCTCTACTACTCCATACCACTTTGTTTAACCCCCTATTGTAAGAG
6786998 GT
131 GT
*
6787000 AAAACAACAATATTAATTAACTTATAAGGGAAGAAAATATATGGACTGGTTAATGGTAGAGCTCA
1 AAAACAACAATATTAATAAACTTATAAGGGAAGAAAATATATGGACTGGTTAATGGTAGAGCTCA
* * *
6787065 ATTTCTACCAGAGTGCAAGTCCTCTACTGCTCCATACCACTTTGTTTAACCCCCTATTGTAAGAG
66 ATTTCTACCAAAATGCAAGTCCTCTACTACTCCATACCACTTTGTTTAACCCCCTATTGTAAGAG
6787130 G
131 G
6787131 AGAAAAAATC
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 122 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (132 bp):
AAAACAACAATATTAATAAACTTATAAGGGAAGAAAATATATGGACTGGTTAATGGTAGAGCTCA
ATTTCTACCAAAATGCAAGTCCTCTACTACTCCATACCACTTTGTTTAACCCCCTATTGTAAGAG
GT
Found at i:6787293 original size:29 final size:29
Alignment explanation
Indices: 6787210--6787293 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 29
6787200 AACTTTTTAA
*
6787210 TTGTGCAATAATAATTTTCACAATTTGA-
1 TTGTGCAATAATAATTTTCACTATTTGAT
* * * *
6787238 TT-TACAATGATTGATTTT---T-TTTTAT
1 TTGTGCAAT-AATAATTTTCACTATTTGAT
6787263 TTGTGCAATAATAATTTTCACTATTTGAT
1 TTGTGCAATAATAATTTTCACTATTTGAT
6787292 TT
1 TT
6787294 ACAATGAAGC
Statistics
Matches: 40, Mismatches: 9, Indels: 13
0.65 0.15 0.21
Matches are distributed among these distances:
24 4 0.10
25 9 0.22
26 5 0.12
27 5 0.12
28 10 0.25
29 7 0.17
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (29 bp):
TTGTGCAATAATAATTTTCACTATTTGAT
Found at i:6793440 original size:21 final size:21
Alignment explanation
Indices: 6793416--6793455 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
6793406 AGAACTCTCC
6793416 CATTTCTTCTTC-CTTCTTCCT
1 CATTT-TTCTTCTCTTCTTCCT
6793437 CATTTTTCTTCTCTTCTTC
1 CATTTTTCTTCTCTTCTTC
6793456 AACGTGTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.05, C:0.35, G:0.00, T:0.60
Consensus pattern (21 bp):
CATTTTTCTTCTCTTCTTCCT
Found at i:6793933 original size:21 final size:21
Alignment explanation
Indices: 6793908--6793948 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6793898 TCTGGGTTAG
* *
6793908 GGGAATCGGTACCCATTCAAA
1 GGGAACCGATACCCATTCAAA
*
6793929 GGGAACCGATACCCCTTCAA
1 GGGAACCGATACCCATTCAA
6793949 CGAATATGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (21 bp):
GGGAACCGATACCCATTCAAA
Found at i:6794393 original size:25 final size:25
Alignment explanation
Indices: 6794365--6794440 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 25
6794355 TTACATTCCA
6794365 TATTATGATACATGACATGAATT-T
1 TATTATGATACATGACATGAATTAT
6794389 GTATTAAATGTATTACATGACATGAATTCAT
1 -TATT--ATG-A-TACATGACATGAATT-AT
*
6794420 TA-TATGTTACATGACATGAAT
1 TATTATGATACATGACATGAAT
6794441 ATGCAGAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
25 18 0.41
27 6 0.14
28 1 0.02
29 16 0.36
30 2 0.05
31 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.39
Consensus pattern (25 bp):
TATTATGATACATGACATGAATTAT
Found at i:6794407 original size:29 final size:26
Alignment explanation
Indices: 6794373--6794440 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 26
6794363 CATATTATGA
*
6794373 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTT-CATTAAATG--T
*
6794402 TACATGACATGAA-TTCATTATATGT
1 TACATGACATGAATTTCATTAAATGT
6794427 TACATGACATGAAT
1 TACATGACATGAAT
6794441 ATGCAGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 14 0.39
27 7 0.19
28 2 0.06
29 13 0.36
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (26 bp):
TACATGACATGAATTTCATTAAATGT
Found at i:6794508 original size:30 final size:32
Alignment explanation
Indices: 6794455--6794515 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 32
6794445 AGAAAAAGTT
*
6794455 ATATGCACTATGTGATAAAAGGTATGTAAATG
1 ATATGCACTATGTGATAAAAGGTATGGAAATG
*
6794487 ATATGC-CTATGTG-TTAAAGGTATGGAAAT
1 ATATGCACTATGTGATAAAAGGTATGGAAAT
6794516 ACTATGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 14 0.52
31 7 0.26
32 6 0.22
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.33
Consensus pattern (32 bp):
ATATGCACTATGTGATAAAAGGTATGGAAATG
Found at i:6794799 original size:22 final size:22
Alignment explanation
Indices: 6794725--6794791 Score: 125
Period size: 22 Copynumber: 3.0 Consensus size: 22
6794715 TTATGGACAT
*
6794725 AATTCTACGGGCACGTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
6794747 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
6794769 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
6794791 A
1 A
6794792 TTTATACGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:6796876 original size:180 final size:181
Alignment explanation
Indices: 6796573--6796935 Score: 678
Period size: 180 Copynumber: 2.0 Consensus size: 181
6796563 GATTGGATTC
6796573 TGTTGAAAGGGTTCTAAATTTATTGCAATTTTTTTAATTATCCGACCCTTTGATTCTGTTTTCCT
1 TGTTGAAAGGGTTCTAAATTTATTGCAATTTTTTTAATTATCCGACCCTTTGATTCTGTTTTCCT
6796638 TATTCTGTTCTATGCGGGCGGACGTTTAGCCTTGTTGTTGTTGTCAGTTTGCTCCTTGGTCTAGA
66 TATTCTGTTCTATGCGGGCGGACGTTTAGCCTTGTTGTTGTTGTCAGTTTGCTCCTTGGTCTAGA
6796703 AGCTG-TTTCCAGTAG-TTGGTGGTTG-TTTTATACAGGTTATGGTTCTTG
131 AGCTGTTTTCCAGTAGATTGGTGGTTGTTTTTATACAGGTTATGGTTCTTG
6796751 TGTTGAAAGGGTTCTAAATTTATTGCAATTTTTTTAATTATCCGACCCTTTGATTCTGTTTTCTC
1 TGTTGAAAGGGTTCTAAATTTATTGCAATTTTTTTAATTATCCGACCCTTTGATTCTG-TTT-TC
6796816 CTTATTCTGTTCTATGCGGGCGGACGTTTAGCCTTGTTGTTGTTGTCAGTTTGCTCCTTGGTCTA
64 CTTATTCTGTTCTATGCGGGCGGACGTTTAGCCTTGTTGTTGTTGTCAGTTTGCTCCTTGGTCTA
6796881 GAAGCTGTTTTCCAGTAGTATTGGTGGTTGTTTTTATACAGGTTATGGTTCTTG
129 GAAGCTGTTTTCCAGTAG-ATTGGTGGTTGTTTTTATACAGGTTATGGTTCTTG
6796935 T
1 T
6796936 TTATGATAGG
Statistics
Matches: 179, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
178 58 0.32
179 3 0.02
180 74 0.41
181 10 0.06
183 10 0.06
184 24 0.13
ACGTcount: A:0.16, C:0.15, G:0.23, T:0.47
Consensus pattern (181 bp):
TGTTGAAAGGGTTCTAAATTTATTGCAATTTTTTTAATTATCCGACCCTTTGATTCTGTTTTCCT
TATTCTGTTCTATGCGGGCGGACGTTTAGCCTTGTTGTTGTTGTCAGTTTGCTCCTTGGTCTAGA
AGCTGTTTTCCAGTAGATTGGTGGTTGTTTTTATACAGGTTATGGTTCTTG
Found at i:6798009 original size:157 final size:155
Alignment explanation
Indices: 6797543--6798009 Score: 606
Period size: 157 Copynumber: 3.0 Consensus size: 155
6797533 AAAAAAATGT
* **
6797543 ATAT-TACTTTCAAATTTCTCTTTTTGATAAAGACTTATATTTTTCAATTTAGTCCCTTGATTTT
1 ATATGTACTTTC-AATTTCTCTTTTTGATAAA-ATTTATATTTTTCAATTTAGTCCCTCAATTTT
* *
6797607 TCATAATTTTCTTATTTCTTCAA-TCATCCTTT-GTTTAACTCTTCTTTTTTACCAAATTTGAAC
64 TCATAATTTTCTTATTTCTTCAATTCATCCTTTATTTTAAGTC-TCTTTTTTACCAAATTTGAAC
*
6797670 CACATCCTCATAAACCATCATAGAATAC
128 CACATGCTCATAAACCATCATAGAATAC
* *
6797698 --ATGTACTTTCAATTTCTCTTTTAATAATAAATTTTATATTTTTCAATTTAGT-CCTCAATTTT
1 ATATGTACTTTCAATTTCTCTTTT--TGATAAAATTTATATTTTTCAATTTAGTCCCTCAATTTT
* * * *
6797760 TCATAATTTCCTTATTTCTTCAATTCATCCTTTATTTCAAGTCTTTTTTTTTACCAAATTTGAAT
64 TCATAATTTTCTTATTTCTTCAATTCATCCTTTATTTTAAGTC-TCTTTTTTACCAAATTTGAAC
* * * *
6797825 AACATGCTCCTAAACCATCACATAATAC
128 CACATGCTCATAAACCATCATAGAATAC
*
6797853 ATATGTACTTTCAATTTCTCTTTTTGATACCAAATTTCTATTTTTCAATTTAGTCCCTCAATTTT
1 ATATGTACTTTCAATTTCTCTTTTTGATA--AAATTTATATTTTTCAATTTAGTCCCTCAATTTT
* *
6797918 TCATAATTTTCTTATTTCTTCAATTCATCCTTTATTTTAAGTC-CATTTTCTCCCAAATTTGAAC
64 TCATAATTTTCTTATTTCTTCAATTCATCCTTTATTTTAAGTCTC-TTTTTTACCAAATTTGAAC
** *
6797982 CACATGCTCATGTACCATAATAGAATAC
128 CACATGCTCATAAACCATCATAGAATAC
6798010 CTATTTGAAT
Statistics
Matches: 269, Mismatches: 32, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
153 44 0.16
154 35 0.13
155 59 0.22
157 80 0.30
158 51 0.19
ACGTcount: A:0.28, C:0.20, G:0.04, T:0.47
Consensus pattern (155 bp):
ATATGTACTTTCAATTTCTCTTTTTGATAAAATTTATATTTTTCAATTTAGTCCCTCAATTTTTC
ATAATTTTCTTATTTCTTCAATTCATCCTTTATTTTAAGTCTCTTTTTTACCAAATTTGAACCAC
ATGCTCATAAACCATCATAGAATAC
Found at i:6800744 original size:20 final size:20
Alignment explanation
Indices: 6800719--6800809 Score: 85
Period size: 20 Copynumber: 4.5 Consensus size: 20
6800709 ACTATGTAAA
6800719 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-GTAAGTAT
* *
6800739 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATGTAAGTAT
* ** *
6800759 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATGTAAGTAT
* * *
6800779 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATGTAAGTAT
6800799 TCGCATTGCGA
1 TCGCATTGCGA
6800810 ATTATGAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
19 3 0.05
20 59 0.95
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (20 bp):
TCGCATTGCGATGTAAGTAT
Found at i:6800830 original size:21 final size:21
Alignment explanation
Indices: 6800806--6800861 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
6800796 TATTCGCATT
*
6800806 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
6800827 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
*
6800847 GCGAATTAGGAAAAT
1 GCGAATTACGAAAAT
6800862 TACATTGCGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:6800947 original size:41 final size:41
Alignment explanation
Indices: 6800739--6800947 Score: 138
Period size: 41 Copynumber: 5.1 Consensus size: 41
6800729 ATAGTAAGAT
* * ***
6800739 TCGCATTGCGATTTACGTATTCGCATTGCGATTTA-CTTAA
1 TCGCATTGCGATTTACTTATTCGCATTGCGAATTAGGAAAA
* * *
6800779 TCGCGTTGCGATTTACGTATTCGCATTGCGAATTATGAAAA
1 TCGCATTGCGATTTACTTATTCGCATTGCGAATTAGGAAAA
** * * * *
6800820 TCGCAACGCGA-ATACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCATTGCGATTTAC-TTATTCGCATTGCGAATTAGGAAAA
** * * * *** *
6800861 TTACATTGCGA--TAGTCAGTATCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTACTTA-T-TCGCATTGCGAATTAGGAAAA
* *
6800902 TCGCATTGCGATTTACTTATTCACATTGCGAATTGGGAAAA
1 TCGCATTGCGATTTACTTATTCGCATTGCGAATTAGGAAAA
6800943 TCGCA
1 TCGCA
6800948 ACGCGAAATT
Statistics
Matches: 126, Mismatches: 37, Indels: 11
0.72 0.21 0.06
Matches are distributed among these distances:
39 2 0.02
40 38 0.30
41 81 0.64
42 1 0.01
43 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (41 bp):
TCGCATTGCGATTTACTTATTCGCATTGCGAATTAGGAAAA
Found at i:6800974 original size:21 final size:22
Alignment explanation
Indices: 6800925--6800974 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
6800915 TACTTATTCA
*
6800925 CATTGCG-AATTGGGAAAATCG
1 CATTGCGAAATTGGAAAAATCG
**
6800946 CAACGCGAAATT-GAAAAATCG
1 CATTGCGAAATTGGAAAAATCG
6800967 CATTGCGA
1 CATTGCGA
6800975 TAGTCATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (22 bp):
CATTGCGAAATTGGAAAAATCG
Found at i:6800993 original size:123 final size:121
Alignment explanation
Indices: 6800716--6800994 Score: 287
Period size: 123 Copynumber: 2.3 Consensus size: 121
6800706 GGCACTATGT
* * * **
6800716 AAATCGCATTGCGATAGTAAGATTCGCATTGCGATTTACGTATTCGCATTGCGATTTACTTAATC
1 AAATCGCATTGCGATAGTAAAAATCGCATTGCGATTCACGTATTCGCATTGCGATTTACCAAATC
* * * *
6800781 GCGTTGCGATTTACGTATTCGCATTGCGAATTATGAAAATCGCAACGCGAATACGT
66 GCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACGCGAATACGA
* * ** *
6800837 AAATCGCAATGCGAATTAG-GAAAATTACATTGCGATAGTCA-GTA-TCGCATTGCGATTTTCCA
1 AAATCGCATTGCG-A-TAGTAAAAATCGCATTGCGAT--TCACGTATTCGCATTGCGATTTACCA
* * *
6800899 AATTCGCATTGCGATTTACTTATTCACATTGCGAATTGGGAAAATCGCAACGCGAA-ATTGAA
62 AA-TCGCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACGCGAATA-CG-A
* * *
6800961 AAATCGCATTGCGATAGTCATAATCGCGTTGCGA
1 AAATCGCATTGCGATAGTAAAAATCGCATTGCGA
6800995 ATCTGGAAAC
Statistics
Matches: 127, Mismatches: 23, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
121 12 0.09
122 34 0.27
123 67 0.53
124 14 0.11
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (121 bp):
AAATCGCATTGCGATAGTAAAAATCGCATTGCGATTCACGTATTCGCATTGCGATTTACCAAATC
GCATTGCGATTTACGTATTCACATTGCGAATTAGGAAAATCGCAACGCGAATACGA
Found at i:6804107 original size:29 final size:29
Alignment explanation
Indices: 6804065--6804140 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
6804055 TTTTTTATAA
* * ***
6804065 AATTACCAAAATAGCACCCATTTCGAATT
1 AATTCCCAAAATAGCACCAAAACCGAATT
*
6804094 AATTCCCATAATAGCACCAAAACCGAATT
1 AATTCCCAAAATAGCACCAAAACCGAATT
*
6804123 AATTCCCAGAATAGCACC
1 AATTCCCAAAATAGCACC
6804141 GGTCAACGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22
Consensus pattern (29 bp):
AATTCCCAAAATAGCACCAAAACCGAATT
Found at i:6804175 original size:13 final size:13
Alignment explanation
Indices: 6804159--6804189 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
6804149 GTCAACGGGT
*
6804159 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
6804172 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
6804185 CGGGT
1 CGGGT
6804190 AAACGGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.19, G:0.48, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:6804232 original size:11 final size:11
Alignment explanation
Indices: 6804216--6804268 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
6804206 GTCAAACTGG
6804216 TCAAAACCGGT
1 TCAAAACCGGT
6804227 TCAAAACCGGT
1 TCAAAACCGGT
6804238 TCAAAACCGGT
1 TCAAAACCGGT
6804249 T--AAACCGG-
1 TCAAAACCGGT
*
6804257 TCAAAACAGGT
1 TCAAAACCGGT
6804268 T
1 T
6804269 TCCAGCGTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
8 1 0.03
9 7 0.18
10 6 0.16
11 24 0.63
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (11 bp):
TCAAAACCGGT
Found at i:6804243 original size:22 final size:19
Alignment explanation
Indices: 6804202--6804268 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
6804192 ACGGGTCGTG
* *
6804202 ACCGGTCAAACTGGTCAAA
1 ACCGGTTAAACCGGTCAAA
6804221 ACCGGTTCAAAACCGGTTCAAA
1 ACCGGTT--AAACCGG-TCAAA
6804243 ACCGGTTAAACCGGTCAAA
1 ACCGGTTAAACCGGTCAAA
*
6804262 ACAGGTT
1 ACCGGTT
6804269 TCCAGCGTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 17 0.40
20 7 0.17
21 6 0.14
22 12 0.29
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (19 bp):
ACCGGTTAAACCGGTCAAA
Found at i:6811369 original size:13 final size:13
Alignment explanation
Indices: 6811351--6811387 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
6811341 ACCGGTCAAC
6811351 GGTCAACGGGTCG
1 GGTCAACGGGTCG
6811364 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
6811377 GGTAAACGGGT
1 GGTCAACGGGT
6811388 AAACGGGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.19, C:0.19, G:0.46, T:0.16
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:6811420 original size:10 final size:10
Alignment explanation
Indices: 6811400--6811435 Score: 56
Period size: 11 Copynumber: 3.6 Consensus size: 10
6811390 ACGGGTCGTG
6811400 ACCGGTC-AA
1 ACCGGTCAAA
6811409 ACCGGTCAAA
1 ACCGGTCAAA
6811419 ACCGGTTCAAA
1 ACCGG-TCAAA
6811430 ACCGGT
1 ACCGGT
6811436 TTCCAGCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 7 0.28
10 8 0.32
11 10 0.40
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.14
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:6814180 original size:44 final size:44
Alignment explanation
Indices: 6814131--6814253 Score: 237
Period size: 44 Copynumber: 2.8 Consensus size: 44
6814121 ATCGTGTCAT
*
6814131 AACATAGATTCCACCTTTAAACAAGTAAATAATTTGTAGGAAAC
1 AACATAGATTCTACCTTTAAACAAGTAAATAATTTGTAGGAAAC
6814175 AACATAGATTCTACCTTTAAACAAGTAAATAATTTGTAGGAAAC
1 AACATAGATTCTACCTTTAAACAAGTAAATAATTTGTAGGAAAC
6814219 AACATAGATTCTACCTTTAAACAAGTAAATAATTT
1 AACATAGATTCTACCTTTAAACAAGTAAATAATTT
6814254 ATTCCGATGG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 78 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.30
Consensus pattern (44 bp):
AACATAGATTCTACCTTTAAACAAGTAAATAATTTGTAGGAAAC
Found at i:6815576 original size:65 final size:65
Alignment explanation
Indices: 6815496--6815625 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
6815486 AAAGAAAAAG
6815496 AACTTTAATAAAAACCCGAGAGAATTTTATAAAACAAAAATATAAAGAAGTGCATTCTCAAGCTT
1 AACTTTAATAAAAACCCGAGAGAATTTTATAAAACAAAAATATAAAGAAGTGCATTCTCAAGCTT
6815561 AACTTTAATAAAAACCCGAGAGAATTTTATAAAACAAAAATATAAAGAAGTGCATTCTCAAGCTT
1 AACTTTAATAAAAACCCGAGAGAATTTTATAAAACAAAAATATAAAGAAGTGCATTCTCAAGCTT
6815626 CACCGTAGGG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (65 bp):
AACTTTAATAAAAACCCGAGAGAATTTTATAAAACAAAAATATAAAGAAGTGCATTCTCAAGCTT
Found at i:6816040 original size:13 final size:14
Alignment explanation
Indices: 6816021--6816053 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6816011 AAATAAATCA
6816021 AAACAAC-CCAAAT
1 AAACAACACCAAAT
*
6816034 CAACAACACCAAAT
1 AAACAACACCAAAT
6816048 AAACAA
1 AAACAA
6816054 GGAATAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.64, C:0.30, G:0.00, T:0.06
Consensus pattern (14 bp):
AAACAACACCAAAT
Found at i:6820337 original size:23 final size:23
Alignment explanation
Indices: 6820294--6820342 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
6820284 TACGCGATCA
**
6820294 TTCGGGACAATTCTATGTGGTGC
1 TTCGGGACAATTCTACATGGTGC
* *
6820317 TTCGGGACATTTCTACATGGTTC
1 TTCGGGACAATTCTACATGGTGC
6820340 TTC
1 TTC
6820343 ACGATAATAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.39
Consensus pattern (23 bp):
TTCGGGACAATTCTACATGGTGC
Found at i:6820399 original size:24 final size:24
Alignment explanation
Indices: 6820372--6820418 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
6820362 CTTCGGGGAC
**
6820372 AATTTCTACGTGGCACTTTGGTGT
1 AATTTCTACACGGCACTTTGGTGT
6820396 AATTTCTACACGGCACTTTGGTG
1 AATTTCTACACGGCACTTTGGTG
6820419 AAATATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (24 bp):
AATTTCTACACGGCACTTTGGTGT
Found at i:6824678 original size:7 final size:8
Alignment explanation
Indices: 6824648--6824689 Score: 57
Period size: 8 Copynumber: 4.9 Consensus size: 8
6824638 TCCCTCATTA
6824648 TTTTTCTT
1 TTTTTCTT
6824656 GTTATTCTCTT
1 -TT-TT-TCTT
6824667 TTTTTCTT
1 TTTTTCTT
6824675 TTTTTCTT
1 TTTTTCTT
6824683 TTTTTCT
1 TTTTTCT
6824690 ATTAGAGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 19 0.61
9 4 0.13
10 4 0.13
11 4 0.13
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTCTT
Found at i:6824682 original size:16 final size:19
Alignment explanation
Indices: 6824648--6824689 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 19
6824638 TCCCTCATTA
6824648 TTTTTCTTGTTATTCTCTT
1 TTTTTCTTGTTATTCTCTT
6824667 TTTTTCTT-TT-TT-TCTT
1 TTTTTCTTGTTATTCTCTT
6824683 TTTTTCT
1 TTTTTCT
6824690 ATTAGAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.48
17 2 0.09
18 2 0.09
19 8 0.35
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTTCTTGTTATTCTCTT
Found at i:6827481 original size:83 final size:83
Alignment explanation
Indices: 6827325--6827481 Score: 260
Period size: 83 Copynumber: 1.9 Consensus size: 83
6827315 AAACACCCAA
*
6827325 CTACTCACCACTATCACCTCCCTCGGCTAAACCATCAATTTACCCAAAGTTTACAAAGGGCTTTG
1 CTACTCACCACTATCACCTCCCTCGGCTAAACCATCAATTCACCCAAAGTTTACAAAGGGCTTTG
**
6827390 TGTTGGTTTTTGGAGCAG
66 TGGCGGTTTTTGGAGCAG
* * *
6827408 CTACTTACCACTATCACCTCCCTCGGCTAAGCCATCAATTCACCCAAAGTTTACAAGGGGCTTTG
1 CTACTCACCACTATCACCTCCCTCGGCTAAACCATCAATTCACCCAAAGTTTACAAAGGGCTTTG
6827473 TGGCGGTTT
66 TGGCGGTTT
6827482 ATGGGGTTGT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (83 bp):
CTACTCACCACTATCACCTCCCTCGGCTAAACCATCAATTCACCCAAAGTTTACAAAGGGCTTTG
TGGCGGTTTTTGGAGCAG
Found at i:6829689 original size:36 final size:36
Alignment explanation
Indices: 6829647--6829722 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
6829637 TTATAGCTAA
*
6829647 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
6829683 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
6829719 AAAA
1 AAAA
6829723 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:6831877 original size:13 final size:13
Alignment explanation
Indices: 6831859--6831886 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6831849 TACTTGAGTC
6831859 ACAAGTCTAGTGA
1 ACAAGTCTAGTGA
6831872 ACAAGTCTAGTGA
1 ACAAGTCTAGTGA
6831885 AC
1 AC
6831887 GAAATCGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (13 bp):
ACAAGTCTAGTGA
Found at i:6834587 original size:24 final size:25
Alignment explanation
Indices: 6834560--6834608 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
6834550 ATGCGAGCGC
6834560 AAGTTTTAAACTAATTT-ATAATTT
1 AAGTTTTAAACTAATTTGATAATTT
*
6834584 AAGTTTTAAATTAATTTGATAATTT
1 AAGTTTTAAACTAATTTGATAATTT
6834609 TATTTAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (25 bp):
AAGTTTTAAACTAATTTGATAATTT
Found at i:6837751 original size:23 final size:23
Alignment explanation
Indices: 6837725--6837786 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
6837715 ATTTTATATA
* *
6837725 GCACTTCAGTGTATTTCTATGCG
1 GCACTTCAGTGCATTTCTACGCG
* *
6837748 GCACTTCAATGCATTTCTACGTG
1 GCACTTCAGTGCATTTCTACGCG
*
6837771 GCACTTCGGTGCATTT
1 GCACTTCAGTGCATTT
6837787 TATACGAGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (23 bp):
GCACTTCAGTGCATTTCTACGCG
Found at i:6844675 original size:21 final size:21
Alignment explanation
Indices: 6844623--6844735 Score: 82
Period size: 21 Copynumber: 5.3 Consensus size: 21
6844613 GTTCTACGTA
* * *
6844623 GTCCTTCGGGACATATATGTA
1 GTCCTTTGGAACATATATGTG
* *
6844644 ATCCTTGGGAACATATATGTG
1 GTCCTTTGGAACATATATGTG
* * *
6844665 GTTCTTTGGAACACATATTTG
1 GTCCTTTGGAACATATATGTG
* *
6844686 GTCCTTTGGAATATATATATG
1 GTCCTTTGGAACATATATGTG
* * * *
6844707 GTTCTTAAGGAGATATCTATGTG
1 GTCCTT-TGGA-ACATATATGTG
6844730 GTCCTT
1 GTCCTT
6844736 CGGGACATTT
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
21 55 0.76
22 3 0.04
23 14 0.19
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (21 bp):
GTCCTTTGGAACATATATGTG
Found at i:6844781 original size:23 final size:23
Alignment explanation
Indices: 6844751--6844813 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
6844741 CATTTTATAT
6844751 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
6844774 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* *
6844797 GGCACTTTGATGCATTT
1 GGCACTTCGGTGCATTT
6844814 TATACGAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.14, C:0.27, G:0.25, T:0.33
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:6846350 original size:32 final size:34
Alignment explanation
Indices: 6846308--6846377 Score: 90
Period size: 32 Copynumber: 2.1 Consensus size: 34
6846298 ACAAATATCG
* * *
6846308 AAAACTTAGACCTATGATAATAAGTATT-GAAAA
1 AAAACTTAGACCTATAACAATAAATATTAGAAAA
*
6846341 AAAAC-TAGACCTTTAACAATAAATATTAGAAAA
1 AAAACTTAGACCTATAACAATAAATATTAGAAAA
6846374 AAAA
1 AAAA
6846378 ATATTGACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.57, C:0.10, G:0.09, T:0.24
Consensus pattern (34 bp):
AAAACTTAGACCTATAACAATAAATATTAGAAAA
Found at i:6846750 original size:59 final size:60
Alignment explanation
Indices: 6846687--6846804 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 60
6846677 CTTATGTATC
* * *
6846687 CAAACTATAAC-CTTCATTT-AAACTAGTCCTT-AAACTTTTGGATATTTTAATTTTATCCT
1 CAAACTATAACTC-TCATTTGAAACTAAT-CTTCAAACTTTTGAATATTTTAATTTCATCCT
* * *
6846746 CAAACTATTATTCTCATTTGAAATTAATCTTCAAACTTTTGAATATTTTAATTTCATCC
1 CAAACTATAACTCTCATTTGAAACTAATCTTCAAACTTTTGAATATTTTAATTTCATCC
6846805 CTATACTACG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
59 18 0.36
60 32 0.64
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.45
Consensus pattern (60 bp):
CAAACTATAACTCTCATTTGAAACTAATCTTCAAACTTTTGAATATTTTAATTTCATCCT
Found at i:6849135 original size:138 final size:136
Alignment explanation
Indices: 6848961--6849242 Score: 356
Period size: 137 Copynumber: 2.1 Consensus size: 136
6848951 TAAATTAAAG
* * * *
6848961 GGACTAAATTGAAATCTAATCTAAAGTGGAGGCTCTAATATCAA-CTTAAATTAATTTTAATCAA
1 GGACTAAATTGAAATCTAACCTAAAGTGGAGGCTCTAATATCAATCCT-AATCAACTTTAATCAA
** * * * *
6849025 -TATTGCAATTTGAATAATTAAATTGGAACCTCGAGCAAAAGTGAGGACCAAATTAAGAATTCTC
65 TTATTG--ATTCAAAAAATTAAATTGGAACCTCGAGCAAAAGAGAGGACCAAATAAAAAATTCTC
6849089 CTAATTTAA
128 CTAATTTAA
* *
6849098 GGACTAAATGTGAAAT-TAAGCCT-AAGATGGAGGCTCTAATATTAATCCTAATCGACTTTAATC
1 GGACTAAAT-TGAAATCTAA-CCTAAAG-TGGAGGCTCTAATATCAATCCTAATCAACTTTAATC
* *
6849161 AATTATTGATTCAAAAAATTAATTTGGAACCTCGAGCATAAGAGAGGACCAAATAAAAAATTCTC
63 AATTATTGATTCAAAAAATTAAATTGGAACCTCGAGCAAAAGAGAGGACCAAATAAAAAATTCTC
6849226 CTAATTTAA
128 CTAATTTAA
6849235 GGACTAAA
1 GGACTAAA
6849243 GATAATCTAG
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
137 81 0.64
138 38 0.30
139 7 0.06
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.30
Consensus pattern (136 bp):
GGACTAAATTGAAATCTAACCTAAAGTGGAGGCTCTAATATCAATCCTAATCAACTTTAATCAAT
TATTGATTCAAAAAATTAAATTGGAACCTCGAGCAAAAGAGAGGACCAAATAAAAAATTCTCCTA
ATTTAA
Found at i:6850947 original size:38 final size:39
Alignment explanation
Indices: 6850877--6850956 Score: 126
Period size: 40 Copynumber: 2.1 Consensus size: 39
6850867 ATATTTAAAG
*
6850877 TTTAGTTTTTGTTTCATTTTAGTACTCATTCGTTAAAAAT
1 TTTAGTTTTTATTTCATTTTAGTACT-ATTCGTTAAAAAT
*
6850917 TTTAGTTTTTATTTCATTTTAGTACT-TTCGTTCAAAAT
1 TTTAGTTTTTATTTCATTTTAGTACTATTCGTTAAAAAT
6850955 TT
1 TT
6850957 AACATTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 13 0.34
40 25 0.66
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.57
Consensus pattern (39 bp):
TTTAGTTTTTATTTCATTTTAGTACTATTCGTTAAAAAT
Found at i:6853102 original size:82 final size:82
Alignment explanation
Indices: 6852958--6853119 Score: 270
Period size: 82 Copynumber: 2.0 Consensus size: 82
6852948 ATGCACTGTA
* * * *
6852958 ATTGTTGGTTTGCTAAAGAAGATGAGAGCTATGGAGAGGGGAAGAAGGATTGAATAAGTGATTTA
1 ATTGTTGGTTTGCTAAAGAAGAAGAAAGCTATGGAAAGGGGAAGAAGGATTGAACAAGTGATTTA
6853023 GGTAGTTTGTTTGGGTT
66 GGTAGTTTGTTTGGGTT
* *
6853040 ATTGTTGGTTTGCTAAAGAAGAAGAAAGCTATGGAAAGGGGAAGAAGGATTGAGCAATTGATTTA
1 ATTGTTGGTTTGCTAAAGAAGAAGAAAGCTATGGAAAGGGGAAGAAGGATTGAACAAGTGATTTA
6853105 GGTAGTTTGTTTGGG
66 GGTAGTTTGTTTGGG
6853120 GGTCTTGTTG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
82 74 1.00
ACGTcount: A:0.31, C:0.03, G:0.35, T:0.31
Consensus pattern (82 bp):
ATTGTTGGTTTGCTAAAGAAGAAGAAAGCTATGGAAAGGGGAAGAAGGATTGAACAAGTGATTTA
GGTAGTTTGTTTGGGTT
Found at i:6853312 original size:26 final size:26
Alignment explanation
Indices: 6853283--6853334 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6853273 TCATCATGTA
6853283 ATTGAAGTGTTTATGAACATGGATTT
1 ATTGAAGTGTTTATGAACATGGATTT
6853309 ATTGAAGTGTTTATGAACATGGATTT
1 ATTGAAGTGTTTATGAACATGGATTT
6853335 GAGGTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTGAAGTGTTTATGAACATGGATTT
Found at i:6853740 original size:21 final size:21
Alignment explanation
Indices: 6853710--6853752 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6853700 CCTTACCCCT
*
6853710 AACTTAAAACCATAAATTATA
1 AACTTAAAACCATAAACTATA
* *
6853731 AACTTTAAACCCTAAACTATA
1 AACTTAAAACCATAAACTATA
6853752 A
1 A
6853753 CCCCATAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (21 bp):
AACTTAAAACCATAAACTATA
Found at i:6854929 original size:37 final size:37
Alignment explanation
Indices: 6854885--6854989 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
6854875 CATTTTCGTC
6854885 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
6854922 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
6854959 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
6854990 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:6855370 original size:17 final size:18
Alignment explanation
Indices: 6855344--6855383 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6855334 ATTATATGGA
6855344 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
6855360 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
6855378 TATTAT
1 TATTAT
6855384 GTATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:6855877 original size:2 final size:2
Alignment explanation
Indices: 6855870--6855895 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6855860 TAATGCTTTG
6855870 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6855896 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6860278 original size:183 final size:182
Alignment explanation
Indices: 6859970--6860501 Score: 940
Period size: 183 Copynumber: 2.9 Consensus size: 182
6859960 TTAAATCCGT
6859970 AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
1 AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
*
6860035 TAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTTCTCCACTGCTTT
66 TAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTC-GTGTTTGCTCCACTGCTTT
6860100 TGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTCA
130 TGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTCA
*
6860153 AAAGCTGAGCTATTCCACTGAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
1 AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
*
6860218 TGGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCAGTGTTTGCTCCACTGCTTT
66 TAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTC-GTGTTTGCTCCACTGCTTT
* *
6860283 TGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTCT
130 TGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTCA
6860336 AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
1 AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
** *
6860401 TAGATTACATTCAAA-TCATGACATTGCTCGGACACTTGGCAATTCGATGTTTGCTCCACTGCTT
66 TAGATTATGTTCAAACT-ATGACACTGCTCGGACACTTGGCAATTCG-TGTTTGCTCCACTGCTT
*
6860465 TTGTCAGGTCAAAGACTTTGTGATGAGATGAACCCTT
129 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTT
6860502 TAGTTAAACC
Statistics
Matches: 334, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
182 2 0.01
183 332 0.99
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (182 bp):
AAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGAA
TAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGTGTTTGCTCCACTGCTTTT
GTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTCA
Found at i:6861702 original size:36 final size:34
Alignment explanation
Indices: 6861662--6861775 Score: 86
Period size: 36 Copynumber: 3.2 Consensus size: 34
6861652 CACTCAAATT
6861662 TGTTTTTCTTAAAACATACTTTGTCTCACTTGAGAC
1 TGTTTTTCTTAAAACA-A-TTTGTCTCACTTGAGAC
* * * ** *
6861698 TGTTTTTCTCGAAAGA-AGATTTATTTCACTCAAGAT
1 TGTTTTTCT-TAAA-ACA-ATTTGTCTCACTTGAGAC
*
6861734 TGTTTTTCTTAAAACAAGATTTGTCTCAATTGAGAC
1 TGTTTTTCTTAAAAC-A-ATTTGTCTCACTTGAGAC
*
6861770 CGTTTT
1 TGTTTT
6861776 CACTCGAAAG
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
34 1 0.02
35 3 0.05
36 49 0.83
37 5 0.08
38 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (34 bp):
TGTTTTTCTTAAAACAATTTGTCTCACTTGAGAC
Found at i:6861738 original size:72 final size:75
Alignment explanation
Indices: 6861646--6861820 Score: 220
Period size: 72 Copynumber: 2.4 Consensus size: 75
6861636 ATGCAGATGA
* * * * *
6861646 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTC
1 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACA-AGATTTGTCTCAATTGAGACCGTTTTCACTC
6861708 GAAAGAA-G-AT
64 GAAAGAAGGCAT
6861718 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCAATTGAGACCGTTTTCACTCGA
1 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCAATTGAGACCGTTTTCACTCGA
6861783 AAGAAGGCAT
66 AAGAAGGCAT
6861793 TTCATTTCACTCAAG-TCTGTTTTT-TTAA
1 TT-ATTTCACTCAAGAT-TGTTTTTCTTAA
6861821 GAAGATTTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
71 1 0.01
72 50 0.55
73 11 0.12
74 1 0.01
75 9 0.10
76 19 0.21
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (75 bp):
TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCAATTGAGACCGTTTTCACTCGA
AAGAAGGCAT
Found at i:6861971 original size:39 final size:39
Alignment explanation
Indices: 6861914--6861988 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
6861904 CCTTGAAATT
* *
6861914 AATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAA
1 AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
* *
6861953 AATTTTGTCTC-CCTTGAGACAGTTTCTCTTGAAACA
1 AATTTTGTCTCTCC-TGAGACAGTTTCCCTCGAAACA
6861989 TAAACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.06
39 29 0.94
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (39 bp):
AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
Found at i:6862074 original size:106 final size:105
Alignment explanation
Indices: 6861891--6862210 Score: 497
Period size: 106 Copynumber: 3.1 Consensus size: 105
6861881 ACAGTTTCTC
* *
6861891 TTGAAAACATTTCCCTTGAAATTA-ATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
6861955 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
66 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* *
6861995 TTGAAAACGTTTCCCTTGAAATGATTTTTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAA
1 TTGAAAACATTTCCCTTGAAATGA-TATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAA
6862060 ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * * *
6862101 TTGAAAACATTTCCCTTGAAATGA-ATTTTATCTCGCTTGAGATAGTTTCTCTTGAAAC-G--AA
1 TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
** *
6862162 TTTTGTCTCCCTTGAGACAGTTTCTCTCCAAACATAAACT
66 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
6862202 TTGAAAACA
1 TTGAAAACA
6862211 ATTTAACGAA
Statistics
Matches: 201, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
101 48 0.24
103 1 0.00
104 51 0.25
106 101 0.50
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.37
Consensus pattern (105 bp):
TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:6862163 original size:36 final size:36
Alignment explanation
Indices: 6862110--6862188 Score: 113
Period size: 36 Copynumber: 2.2 Consensus size: 36
6862100 ATTGAAAACA
* * * *
6862110 TTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAG
1 TTTCTCTTGAAACGAATTTTATCTCCCTTGAGACAG
*
6862146 TTTCTCTTGAAACGAATTTTGTCTCCCTTGAGACAG
1 TTTCTCTTGAAACGAATTTTATCTCCCTTGAGACAG
6862182 TTTCTCT
1 TTTCTCT
6862189 CCAAACATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (36 bp):
TTTCTCTTGAAACGAATTTTATCTCCCTTGAGACAG
Found at i:6862486 original size:105 final size:105
Alignment explanation
Indices: 6862304--6862857 Score: 850
Period size: 105 Copynumber: 5.3 Consensus size: 105
6862294 CTCGAGAATA
6862304 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6862369 GACCGCTGCTTGTCAACAATAACTTCTCAATTTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* *
6862409 AATTTCAACTTCACAACGAAGGATATTGGACTTCAAACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6862474 GATCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
6862514 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6862579 GACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGAC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
6862619 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC-TCTACGACGAAG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC-ACGACGAAG
* *
6862683 GGACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGAGTC
65 GGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* * * * *
6862719 AATTTCAACTTCACAGCGAAGGATATTGGACTCGATACAACACAAGTTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * * * *
6862784 GACGGCTGGTTGTCAACAAACAATTTCCCAGTTCCAGAGCC
66 GACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCC
* *
6862825 AATTTCAACTTCACGACGGAGGATATTGGACTC
1 AATTTCAACTTCACAACGAAGGATATTGGACTC
6862858 GGAACAATGT
Statistics
Matches: 414, Mismatches: 27, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
100 79 0.19
101 5 0.01
102 3 0.01
103 4 0.01
104 5 0.01
105 281 0.68
106 37 0.09
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
Found at i:6863492 original size:37 final size:37
Alignment explanation
Indices: 6863399--6863502 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 37
6863389 ATTTTCGTCA
* *
6863399 TACTAGGATTCAAACTCCTAAAAATACGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
* * *
6863436 TGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTC
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
* * * *
6863473 TACTAAGATTTAAATTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
6863503 CCACAAGCAC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.30
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
Found at i:6864009 original size:72 final size:75
Alignment explanation
Indices: 6863915--6864089 Score: 200
Period size: 72 Copynumber: 2.4 Consensus size: 75
6863905 ATGCAGATGA
* * * * *
6863915 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTATTTT-TCTC
1 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACA-AGATTTGACTCACTTGAGACCATTTTCACTC
6863977 GAAAGAA-G-AT
64 GAAAGAAGGCAT
* *
6863987 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGACTCGCTTGAGACCGTTTTCACTCGA
1 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGACTCACTTGAGACCATTTTCACTCGA
6864052 AAGAAGGCAT
66 AAGAAGGCAT
**
6864062 TTCATTTCACTCAAGGCTGTTTTT-TTAA
1 TT-ATTTCACTCAAGATTGTTTTTCTTAA
6864090 GAAGATTTTA
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
71 1 0.01
72 48 0.55
73 11 0.12
74 1 0.01
75 8 0.09
76 19 0.22
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (75 bp):
TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGACTCACTTGAGACCATTTTCACTCGA
AAGAAGGCAT
Found at i:6864022 original size:36 final size:36
Alignment explanation
Indices: 6863915--6864024 Score: 98
Period size: 36 Copynumber: 3.1 Consensus size: 36
6863905 ATGCAGATGA
*
6863915 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATA-CT
1 TTATCTCACTCAAGA-TTGTTTTTCTTAAAACA-AGAT
* ** * * ** *
6863951 TTGTCTCACTTGAGACTATTTTTCTCGAAAGAAGAT
1 TTATCTCACTCAAGATTGTTTTTCTTAAAACAAGAT
*
6863987 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGAT
1 TTATCTCACTCAAGATTGTTTTTCTTAAAACAAGAT
6864023 TT
1 TT
6864025 GACTCGCTTG
Statistics
Matches: 54, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
35 1 0.02
36 52 0.96
37 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (36 bp):
TTATCTCACTCAAGATTGTTTTTCTTAAAACAAGAT
Found at i:6864326 original size:105 final size:104
Alignment explanation
Indices: 6864160--6864478 Score: 502
Period size: 105 Copynumber: 3.1 Consensus size: 104
6864150 ACAGTTTCTC
* * *
6864160 TTGAAAACATTTCCCTTGAAATTAATTTTTTCTTTCATGAGATAGTTTCCCTCA-AAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCT-AGAAACAGAAAA
6864224 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
*
6864264 TTGAAAACATTTCCCTTGAAATGATTTTTTTTCTCTCTTGAGATAGTTTCCCTAGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGA-ATTTTTTCTCTCTTGAGATAGTTTCCCTAGAAACAGAAAA
6864329 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * *
6864369 TTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC-G--AAT
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTAGAAACAGAAAAT
** *
6864431 TTTGTCTCCCTTGAGACAGTTTCTCTCCAAACATAAACT
66 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
6864470 TTGAAAACA
1 TTGAAAACA
6864479 ATTTAACGAA
Statistics
Matches: 202, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
101 48 0.24
103 1 0.00
104 54 0.27
105 99 0.49
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (104 bp):
TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTAGAAACAGAAAAT
TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:6864425 original size:36 final size:36
Alignment explanation
Indices: 6864378--6864453 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
6864368 ATTGAAAACA
* * *
6864378 TTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
*
6864414 TTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
6864450 TTTC
1 TTTC
6864454 TCTCCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
Found at i:6864754 original size:105 final size:105
Alignment explanation
Indices: 6864572--6865125 Score: 832
Period size: 105 Copynumber: 5.3 Consensus size: 105
6864562 CTCGAGAATA
6864572 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6864637 GACCGCTGCTTGTCAACAATAACTTCTCAATTTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* *
6864677 AATTTTAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6864742 GACCGCTGCTTGTCAACAACAACTTCCGAATCTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
6864782 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
6864847 GACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* *
6864887 AATTTCAACTTCACAACGAAGGATATTGAACTCCAGACAACGCAAGTTCAAC-TCTACGACAAAG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC-ACGACGAAG
* * *
6864951 GGACTGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGAGTC
65 GGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* * * *
6864987 AATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * * ** *
6865052 GACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCC
66 GACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCC
* *
6865093 AATTTCAACTTCACGACGGAGGATATTGGACTC
1 AATTTCAACTTCACAACGAAGGATATTGGACTC
6865126 GGAACAATGC
Statistics
Matches: 411, Mismatches: 30, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
100 78 0.19
101 5 0.01
102 3 0.01
103 4 0.01
104 5 0.01
105 279 0.68
106 37 0.09
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
Found at i:6865718 original size:37 final size:37
Alignment explanation
Indices: 6865665--6865769 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
6865655 CATTTTCGTC
6865665 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
6865702 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
6865739 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
6865770 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:6866263 original size:36 final size:36
Alignment explanation
Indices: 6866223--6866339 Score: 90
Period size: 36 Copynumber: 3.1 Consensus size: 36
6866213 ATACTTTGTC
6866223 TCACTTGAGACTGTTTTTCTCGAAAGAAGATTTATT
1 TCACTTGAGACTGTTTTTCTCGAAAGAAGATTTATT
** * ** * * *
6866259 TCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTC
1 TCACTTGAGACTGTTTTTCTCGAAAGAAGATTTATT
* ** *
6866295 TCGCTTGAGACCATTTTCACTCGAAAGAAGGCATTTCATT
1 TCACTTGAGACTGTTTT-TCTCGAAAGAA-G-ATTT-ATT
6866335 TCACT
1 TCACT
6866340 CAAGGCTGTT
Statistics
Matches: 56, Mismatches: 21, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
36 39 0.70
37 7 0.12
38 1 0.02
39 4 0.07
40 5 0.09
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (36 bp):
TCACTTGAGACTGTTTTTCTCGAAAGAAGATTTATT
Found at i:6866276 original size:72 final size:75
Alignment explanation
Indices: 6866182--6866356 Score: 209
Period size: 72 Copynumber: 2.4 Consensus size: 75
6866172 ATGCAGATGA
* * ** *
6866182 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTC
1 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACA-AGATTTGTCTCACTTGAGACCATTTTCACTC
6866244 GAAAGAA-G-AT
64 GAAAGAAGGCAT
*
6866254 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCATTTTCACTCGA
1 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCATTTTCACTCGA
6866319 AAGAAGGCAT
66 AAGAAGGCAT
**
6866329 TTCATTTCACTCAAGGCTGTTTTT-TTAA
1 TT-ATTTCACTCAAGATTGTTTTTCTTAA
6866357 GAAGATTTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
71 1 0.01
72 49 0.55
73 11 0.12
74 1 0.01
75 8 0.09
76 19 0.21
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (75 bp):
TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCATTTTCACTCGA
AAGAAGGCAT
Found at i:6866391 original size:73 final size:72
Alignment explanation
Indices: 6866198--6866393 Score: 159
Period size: 73 Copynumber: 2.7 Consensus size: 72
6866188 CACTCAAATT
* * * * **
6866198 TGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGA-CTGTTTTTCTCGAAAGAAGATTTATTTC
1 TGTTTTTCTT-AAACA-AGATTTATCTCGCTTGAGACCAGTTTCACTCGAAAGAAGATTTATTTC
*
6866261 ACTCAAGAT
64 ACTCAAGAC
* *
6866270 TGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCATTTTCACTCGAAAGAAGGCATTTCATT
1 TGTTTTTCTT-AAACAAGATTTATCTCGCTTGAGACCAGTTTCACTCGAAAGAA-G-ATTT-ATT
*
6866335 TCACTCAAGGC
62 TCACTCAAGAC
* ** * *
6866346 TGTTTTT-TT-AAGAAGATTTTATCTTTCTTGAGA-TAGTTTCCCTCGAAA
1 TGTTTTTCTTAAACAAGA-TTTATCTCGCTTGAGACCAGTTTCACTCGAAA
6866394 CAGAAAATTT
Statistics
Matches: 103, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
71 1 0.01
72 31 0.30
73 32 0.31
74 14 0.14
75 6 0.06
76 19 0.18
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (72 bp):
TGTTTTTCTTAAACAAGATTTATCTCGCTTGAGACCAGTTTCACTCGAAAGAAGATTTATTTCAC
TCAAGAC
Found at i:6866593 original size:105 final size:104
Alignment explanation
Indices: 6866427--6866743 Score: 514
Period size: 105 Copynumber: 3.1 Consensus size: 104
6866417 ACAGTTTCTC
* * *
6866427 TTGAAAACATTTCCCTTGAAATTAATTTTTTCTCTCCTGAGATAGTTTCCATCGAAACAGAAAAT
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
6866492 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
66 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
*
6866531 TTGAAAACATTTCCCTTGAAATGATTTTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGA-ATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
6866596 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * *
6866636 TTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC-G--AAT
1 TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
** *
6866698 TTTGTCTCCCTTGAGACAGTTTCTCTCCAAACATAAACT
66 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
6866737 TTGAAAA
1 TTGAAAA
6866744 AAATTTAACG
Statistics
Matches: 201, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
101 46 0.23
103 1 0.00
104 53 0.26
105 101 0.50
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (104 bp):
TTGAAAACATTTCCCTTGAAATGAATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:6866692 original size:36 final size:36
Alignment explanation
Indices: 6866645--6866720 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
6866635 ATTGAAAACA
* * *
6866645 TTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
*
6866681 TTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
6866717 TTTC
1 TTTC
6866721 TCTCCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACGAATTTTATCTCCCTTGAGACAG
Found at i:6867021 original size:105 final size:105
Alignment explanation
Indices: 6866839--6867392 Score: 803
Period size: 105 Copynumber: 5.3 Consensus size: 105
6866829 CTCGAGAATA
6866839 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
6866904 GACCGCTGCTTGTCAACAATAACTTCTCAATTTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* *
6866944 AATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGT
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
6867009 GACCGTTGCTTGTCAACAACAACTTCCCAATCTGAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
*
6867049 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAAGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
6867114 GACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* *
6867154 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTTACGACGAAAG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
6867219 GACCGCTGCTTCTCAACAA-AA-TT-TC-A-TTCAGAGTC
66 GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
* * * * * *
6867254 AATTTCAAATTTACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
** * * ** *
6867319 GATGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCC
66 GACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCC
* *
6867360 AATTTCAACTTCACGACGGAGGATATTGGACTC
1 AATTTCAACTTCACAACGAAGGATATTGGACTC
6867393 GGAACAATGC
Statistics
Matches: 403, Mismatches: 40, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
100 77 0.19
101 3 0.01
102 3 0.01
103 4 0.01
104 3 0.01
105 278 0.69
106 35 0.09
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCC
Found at i:6868027 original size:37 final size:37
Alignment explanation
Indices: 6867933--6868037 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 37
6867923 CATTTTCGTC
*
6867933 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAAGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
6867970 TTGCT-AGAATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAAG-ATTCAAACTCCTAAAAATAGGATAAAATT
* * *
6868007 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTACTAAGATTCAAACTCCTAAAAATAGGAT
6868038 CCACAAGCAC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
36 1 0.02
37 53 0.95
38 2 0.04
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (37 bp):
CTACTAAGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:6868416 original size:17 final size:17
Alignment explanation
Indices: 6868394--6868431 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
6868384 ATATGGATAT
* *
6868394 TTATTCATTTATTTTTA
1 TTATTCATGTATTATTA
6868411 TTATTCATGTATTATTA
1 TTATTCATGTATTATTA
6868428 TTAT
1 TTAT
6868432 ATGTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (17 bp):
TTATTCATGTATTATTA
Found at i:6868699 original size:9 final size:9
Alignment explanation
Indices: 6868677--6868739 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 9
6868667 ATCTTATAAC
6868677 TTTA-TATT
1 TTTATTATT
*
6868685 TATATTATT
1 TTTATTATT
6868694 TTTATTATT
1 TTTATTATT
**
6868703 TTCGTT-TT
1 TTTATTATT
6868711 TTTATTCATT
1 TTTATT-ATT
*
6868721 ATTATTATT
1 TTTATTATT
*
6868730 ATTATT-TT
1 TTTATTATT
6868738 TT
1 TT
6868740 AAAAAAAAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
8 12 0.27
9 25 0.57
10 7 0.16
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (9 bp):
TTTATTATT
Found at i:6868931 original size:2 final size:2
Alignment explanation
Indices: 6868924--6868967 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
6868914 TAATACTTTG
*
6868924 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6868966 AT
1 AT
6868968 TTTTTTCCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:6869833 original size:2 final size:2
Alignment explanation
Indices: 6869826--6869851 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6869816 TTACCTTCAA
6869826 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6869852 TAGATAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6870529 original size:20 final size:19
Alignment explanation
Indices: 6870497--6870534 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
6870487 TTTTTTTATT
6870497 ATATCACAATCAATATGATA
1 ATATCACAATCAA-ATGATA
6870517 ATATC-CAACTCAAATGAT
1 ATATCACAA-TCAAATGAT
6870535 CACATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (19 bp):
ATATCACAATCAAATGATA
Found at i:6873612 original size:17 final size:17
Alignment explanation
Indices: 6873590--6873625 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6873580 CCAGCTCTTG
6873590 AATATTTATAATTTTTA
1 AATATTTATAATTTTTA
*
6873607 AATATTTTTAATTTTTA
1 AATATTTATAATTTTTA
6873624 AA
1 AA
6873626 AAATAAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AATATTTATAATTTTTA
Found at i:6874819 original size:2 final size:2
Alignment explanation
Indices: 6874812--6874847 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6874802 AAAATATTTA
6874812 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6874848 TTCTATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6874871 original size:13 final size:13
Alignment explanation
Indices: 6874853--6874878 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6874843 TATATTTCTA
6874853 TTAATATTATATT
1 TTAATATTATATT
6874866 TTAATATTATATT
1 TTAATATTATATT
6874879 AATATACTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTAATATTATATT
Found at i:6874930 original size:27 final size:26
Alignment explanation
Indices: 6874896--6874960 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
6874886 TCAGTTATAT
* * *
6874896 TATAATAATATAATATTATATTTTTAA
1 TATAATAATAT-ATAATAAATTATTAA
*
6874923 TTTAATAATATATAATAAATTATTAA
1 TATAATAATATATAATAAATTATTAA
6874949 TATAATTAATAT
1 TATAA-TAATAT
6874961 TAGTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
TATAATAATATATAATAAATTATTAA
Found at i:6878793 original size:6 final size:6
Alignment explanation
Indices: 6878782--6879418 Score: 965
Period size: 6 Copynumber: 109.8 Consensus size: 6
6878772 CATCTTTGGG
* *
6878782 ATATAA ATATAA ATAAAA ATATAA ATATAA TAAATAA ATATAA ATAT-A
1 ATATAA ATATAA ATATAA ATATAA ATATAA -ATATAA ATATAA ATATAA
6878830 ATATAA ATAT-A ATAT-A ATA-AA ATATAA ATAT-A A-ATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6878873 ATAT-A A-ATAA ATATAA ATATAA ATA-AA A-ATAA ATATAA ATATATA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATA-A
6878918 A-ATATA ATATAA ATAT-A ATATAA ATATAA ATATAA ATATAA ATATAA
1 ATATA-A ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6878965 ATATAA ATATAA ATATAA ATATAA ATATATA ATAT-A ATATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATA-A ATATAA ATATAA ATATAA
6879013 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATAT-A ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6879060 ATATAA ATATAA ATATAA ATAT-A A-ATAA ATATAA ATAT-A A-ATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6879104 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATAT-A A-ATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6879150 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATAT-A ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6879197 ATATAAA ATATAA ATATAA ATATAA ATATAA ATAT-- A-ATAA ATATAA
1 ATAT-AA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
6879243 ATATAA ATAT-A A-ATAA ATATAA ATATAA ATAT-A ATATAA ATAT-A
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA
*
6879287 A-ATAA ATATAA ATATAA ATAAATAT ATATAA ATATAA ATATAA ATATAA
1 ATATAA ATATAA ATATAA AT--ATAA ATATAA ATATAA ATATAA ATATAA
6879336 ATAT-A ATATAA ATATAA ATATAA ATATAA ATATAA ATATATA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATAA ATATA-A ATATAA
6879384 ATATAA ATATAA ATATAA ATATAA ATATAA ATATA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATA
6879419 TAAAGTGATG
Statistics
Matches: 589, Mismatches: 6, Indels: 72
0.88 0.01 0.11
Matches are distributed among these distances:
3 2 0.00
4 16 0.03
5 83 0.14
6 456 0.77
7 27 0.05
8 5 0.01
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATATAA
Found at i:6884925 original size:19 final size:19
Alignment explanation
Indices: 6884901--6884947 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
6884891 ATGAATATAA
6884901 TAAATAAACATAATAATAT
1 TAAATAAACATAATAATAT
* *
6884920 TAAATAAATATAATTATAT
1 TAAATAAACATAATAATAT
6884939 TATAATAAA
1 TA-AATAAA
6884948 TGTAATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAATAAACATAATAATAT
Found at i:6884960 original size:13 final size:13
Alignment explanation
Indices: 6884942--6884966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6884932 ATTATATTAT
6884942 AATAAATGTAATA
1 AATAAATGTAATA
6884955 AATAAATGTAAT
1 AATAAATGTAAT
6884967 TGGAGGGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
AATAAATGTAATA
Found at i:6885588 original size:3 final size:3
Alignment explanation
Indices: 6885580--6885664 Score: 91
Period size: 3 Copynumber: 27.7 Consensus size: 3
6885570 TTCATTTAAA
*
6885580 TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT TAT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * *
6885626 AAT TACT AAT T-T TAT TATT TAT TAC TAA TAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TA
6885665 CAAACGGGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
2 2 0.03
3 59 0.86
4 8 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:6885610 original size:19 final size:18
Alignment explanation
Indices: 6885578--6885664 Score: 93
Period size: 19 Copynumber: 4.7 Consensus size: 18
6885568 TTTTCATTTA
*
6885578 AATATTATTATTATTATT
1 AATATTATTATTATTACT
* *
6885596 ATTATTATATATTATTATT
1 AATATTAT-TATTATTACT
* * *
6885615 ATTATAATTATAATTACT
1 AATATTATTATTATTACT
*
6885633 AATTTTATTATTTATTACT
1 AATATTATTA-TTATTACT
6885652 AATATTATTATTA
1 AATATTATTATTA
6885665 CAAACGGGCC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
18 25 0.43
19 33 0.57
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
AATATTATTATTATTACT
Found at i:6887020 original size:22 final size:22
Alignment explanation
Indices: 6886989--6887034 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
6886979 ATTATTATAG
6886989 TTATAAATATAT-ATATAATTAT
1 TTATAAATATATAATA-AATTAT
* *
6887011 TTATATATATTTAATAAATTAT
1 TTATAAATATATAATAAATTAT
6887033 TT
1 TT
6887035 TGATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTATAAATATATAATAAATTAT
Found at i:6889459 original size:15 final size:15
Alignment explanation
Indices: 6889422--6889461 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6889412 AATAATTTAC
6889422 ATTTACATTT-GCAT
1 ATTTACATTTGGCAT
6889436 ATTTACATTTGGCAT
1 ATTTACATTTGGCAT
* *
6889451 TTTTGCATTTG
1 ATTTACATTTG
6889462 TATTGCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTTACATTTGGCAT
Found at i:6889530 original size:27 final size:26
Alignment explanation
Indices: 6889500--6889560 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
6889490 CATTCACATA
*
6889500 TTTACATTTGAATTTGCATTTGCATTT
1 TTTACATTTGAATTTACATTTGCA-TT
* * *
6889527 TTTACGTTTGTATTTACATTTTCATT
1 TTTACATTTGAATTTACATTTGCATT
6889553 TTTACATT
1 TTTACATT
6889561 ATTACATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.59
Consensus pattern (26 bp):
TTTACATTTGAATTTACATTTGCATT
Found at i:6893808 original size:83 final size:83
Alignment explanation
Indices: 6893669--6894141 Score: 743
Period size: 83 Copynumber: 5.7 Consensus size: 83
6893659 TAACTGAAAA
* * *
6893669 ATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGCAGAACC
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
*
6893734 AATCATTGAATTGGGAAG
66 AATCATTGAATTTGGAAG
* * * *
6893752 ATGAATTTGTTAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGCAGAACC
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
*
6893817 AATCATTGAATTGGGAAG
66 AATCATTGAATTTGGAAG
* *
6893835 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAGAAC
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAAC
*
6893899 CAATCATTGAATTTAGAAG
65 CAATCATTGAATTTGGAAG
* *
6893918 ATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAGAAT
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAGAAC
6893982 CAATCATTGAATTTGGAAG
65 CAATCATTGAATTTGGAAG
*
6894001 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
*
6894066 AATCATTGAATTTAGAAG
66 AATCATTGAATTTGGAAG
* * *
6894084 ATGAATTTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATTTGATCTGGTTTGG
1 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
6894142 TAGGAACTAC
Statistics
Matches: 367, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
82 3 0.01
83 360 0.98
84 4 0.01
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (83 bp):
ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
AATCATTGAATTTGGAAG
Found at i:6895407 original size:74 final size:74
Alignment explanation
Indices: 6895255--6895416 Score: 202
Period size: 74 Copynumber: 2.2 Consensus size: 74
6895245 AAGCAAATAT
* * *
6895255 TGGGGCATGCTGAAAACCCTTTTCAAACAGAATCAGAAATGTTGAAATATTCTGAATATTTATCA
1 TGGGGCATGCTGAAAACCCATTTCAAACAGAATCAGAAATGTTGAAACATTCTGAACATTTATCA
6895320 GCAAAATGC
66 GCAAAATGC
* * ** *
6895329 TGGGGCATGCTGAAAACCCATTTCAATCAGAATCAGAACTGTTGATGCATTTTGAACACTTGTAT
1 TGGGGCATGCTGAAAACCCATTTCAAACAGAATCAGAAATGTTGAAACATTCTGAACA-TT-TAT
* *
6895394 TAGC-CAATG-
64 CAGCAAAATGC
6895403 TGGGGCATGCTGAA
1 TGGGGCATGCTGAA
6895417 GGCCTATATC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
74 64 0.84
75 6 0.08
76 6 0.08
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (74 bp):
TGGGGCATGCTGAAAACCCATTTCAAACAGAATCAGAAATGTTGAAACATTCTGAACATTTATCA
GCAAAATGC
Found at i:6896730 original size:22 final size:22
Alignment explanation
Indices: 6896704--6896758 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
6896694 ATCTACACTC
*
6896704 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
6896726 TTCAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
6896748 TTCAAAGATGA
1 TTCAAAGATGA
6896759 AAACTTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:6897734 original size:113 final size:112
Alignment explanation
Indices: 6897227--6898479 Score: 1617
Period size: 113 Copynumber: 11.2 Consensus size: 112
6897217 CATTTGAAGA
* * ** * * ** *
6897227 AGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCACCCGGTGGATCAGCAGTGT-CAGTTAGAG
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCA-TTTCCAGAGAAAG
*
6897291 TTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAATTCATAATG
64 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * * * * *** *
6897339 AGAAGAATTTGTTCAACCTTTTCCCTGAATTCATTACTTGATGAATTATTTTTTCCAGAGGAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6897404 TCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * * *
6897451 AGAAGAACTTGTTTAACATTTTGCTCGAATTCATCACTTGATGGATTAACATTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6897516 TCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * * *
6897563 AGAAGAACTTGTTTAACCTTTTGCTTGAATTCATCACTTGATGGATTATCATTGCCAGAGAAGGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6897628 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* ** *
6897676 AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCATTCGATGGATCAGCATTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATT-GATGGATCAGCATTTCCAGAGAAAGT
6897741 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * *
6897789 AGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCATTTGATGGATCAGCTTTTCCAGAAAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6897854 TCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * *
6897901 AGAAGAACTTGTTTAACCTTTTGCTCGAATTCATCACTTGATGGATTAACATTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6897966 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * * * *
6898014 AGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTATCATTGCCAGAGAAGGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
*
6898079 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* ** *
6898127 AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCATTCGATGGATCAGCATTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATT-GATGGATCAGCATTTCCAGAGAAAGT
6898192 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * *
6898240 AGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAGAAAGT
6898305 TCATAAT-----G-----A---GAAGAAGGAAGAAGAAGTTCATAATG
65 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * * *
6898340 AGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAG
1 AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCA-TTGATGGATCAGCATTTCCAGAG-AAAG
* *
6898404 TTCATAATGAGAAGAACTCTTCATCTGAAGAAGAAAGAAGAAGTTCATAATA
64 TTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATG
*
6898456 AGAAGAACTTGTTCAACTTTTTGC
1 AGAAGAACTTGTTCAACCTTTTGC
6898480 ATAATTCTAT
Statistics
Matches: 1017, Mismatches: 100, Indels: 44
0.88 0.09 0.04
Matches are distributed among these distances:
99 1 0.00
100 89 0.09
103 1 0.00
105 1 0.00
108 1 0.00
111 2 0.00
112 379 0.37
113 493 0.48
114 4 0.00
116 46 0.05
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (112 bp):
AGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTGATGGATCAGCATTTCCAGAGAAAGTT
CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
Found at i:6897856 original size:338 final size:338
Alignment explanation
Indices: 6897227--6898479 Score: 1759
Period size: 338 Copynumber: 3.7 Consensus size: 338
6897217 CATTTGAAGA
* ** * * * ** *
6897227 AGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCACCCGGTGGATCAGCAGTGTCAGTTAGAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAGCATTGCCAGAGAAAGT
6897292 TCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
* * * * ** * *
6897356 CTTTT-CCCTGAATTCATTACTTGATGAATTATTTTTTCCAGAGGAAGTTCATAATGAGAAGAAC
131 CTTTTGCTC-GAATTCATCACTTGATGGATCATCATTGCCAGAGAAAGTTCATAATGAGAAGAAC
* * * *
6897420 TTATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTTAACATTTTGCTCGAATTCA
195 TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTCAAATTCA
* * *
6897484 TCACTTGATGGATTAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGA
260 TCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGA
6897549 AGAAGTTCATAATG
325 AGAAGTTCATAATG
* * * * *
6897563 AGAAGAACTTGTTTAACCTTTTGCTTGAATTCATCACTTGATGGATTATCATTGCCAGAGAAGGT
1 AGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAGCATTGCCAGAGAAAGT
6897628 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
* * * *
6897693 CTTTTGCTCAAATCCATCA-TTCGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAAC
131 CTTTTGCTCGAATTCATCACTT-GATGGATCATCATTGCCAGAGAAAGTTCATAATGAGAAGAAC
*
6897757 TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCA
195 TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTCAAATTCA
* *
6897822 TCATTTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGA
260 TCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGA
6897887 AGAAGTTCATAATG
325 AGAAGTTCATAATG
* ** * * *
6897901 AGAAGAACTTGTTTAACCTTTTGCTCGAATTCATCACTTGATGGATTAACATTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAGCATTGCCAGAGAAAGT
6897966 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
* * * *
6898031 CTTTTGTTTGAATTCATCACTTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACT
131 CTTTTGCTCGAATTCATCACTTGATGGATCATCATTGCCAGAGAAAGTTCATAATGAGAAGAACT
* * * *
6898096 CATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCAT
196 CATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTCAAATTCAT
* *
6898161 CATTCGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
261 CATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAG-AGGAAGA
6898226 AGAAGTTCATAATG
325 AGAAGTTCATAATG
* * * *
6898240 AGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGT
1 AGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAGCATTGCCAGAGAAAGT
6898305 TCATAATGAGAAG-A---A---G--GAA-GAAGAAG---TTCATAATGAGAAGAATTTGTTCAAC
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
* * * *
6898357 CTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAAC
131 CTTTTGCTCGAATTCATCACTTGATGGATCATCATTGCCAGAG-AAAGTTCATAATGAGAAGAA-
* *
6898421 TCTTCATCTGAAGAAGAAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTGC
194 -C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGC
6898480 ATAATTCTAT
Statistics
Matches: 833, Mismatches: 74, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
325 1 0.00
326 81 0.10
328 1 0.00
329 58 0.07
330 3 0.00
332 1 0.00
335 1 0.00
336 79 0.09
337 95 0.11
338 420 0.50
339 93 0.11
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (338 bp):
AGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACTTGATGGATCAGCATTGCCAGAGAAAGT
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAC
CTTTTGCTCGAATTCATCACTTGATGGATCATCATTGCCAGAGAAAGTTCATAATGAGAAGAACT
CATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTCAAATTCAT
CATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAA
GAAGTTCATAATG
Found at i:6898325 original size:100 final size:100
Alignment explanation
Indices: 6898214--6898419 Score: 333
Period size: 100 Copynumber: 2.1 Consensus size: 100
6898204 GAACTCATCT
*
6898214 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCATTT
1 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCATTT
* * *
6898279 GATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGA
66 GATGGATCAACATTGCCAG-GTAAAGTTCATAATGA
* *
6898314 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCATTT
1 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCATTT
*
6898379 GATGGATCAACATTGCCAGGTAGAGTTCATAATGA
66 GATGGATCAACATTGCCAGGTAAAGTTCATAATGA
6898414 GAAGAA
1 GAAGAA
6898420 CTCTTCATCT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
99 1 0.01
100 97 0.99
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (100 bp):
GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCATTT
GATGGATCAACATTGCCAGGTAAAGTTCATAATGA
Found at i:6898878 original size:3 final size:3
Alignment explanation
Indices: 6898870--6898963 Score: 100
Period size: 3 Copynumber: 30.7 Consensus size: 3
6898860 TTCATTTAAA
* * *
6898870 TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT AAT TAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6898918 TACT AAT T-T TAT TATT TAT TAC TAA TAT TAT TAT TAAT TAT TAT TA
1 TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
6898964 CAAACGGGCC
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.03
3 66 0.87
4 8 0.11
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:6900351 original size:22 final size:24
Alignment explanation
Indices: 6900302--6900345 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
6900292 ATAGTTATAA
6900302 ATATATATAATAATAATTATTTAT
1 ATATATATAATAATAATTATTTAT
*
6900326 ATATATTTAAT-A-AATTATTT
1 ATATATATAATAATAATTATTT
6900346 TGATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 1 0.05
24 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATATATAATAATAATTATTTAT
Found at i:6900351 original size:24 final size:22
Alignment explanation
Indices: 6900302--6900345 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
6900292 ATAGTTATAA
6900302 ATATATATAATAATAATTATTT
1 ATATATATAATAATAATTATTT
*
6900324 ATATATAT-TTAATAAATTATTT
1 ATATATATAATAAT-AATTATTT
6900346 TGATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATATATAATAATAATTATTT
Found at i:6901533 original size:23 final size:23
Alignment explanation
Indices: 6901507--6901555 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
6901497 CATCGAAGTA
*
6901507 CCACGTAGAATTGCACCGTAGTG
1 CCACGTAGAATTGCACCATAGTG
6901530 CCACGTAGAATTGCACCATAGTG
1 CCACGTAGAATTGCACCATAGTG
6901553 CCA
1 CCA
6901556 TATAATAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (23 bp):
CCACGTAGAATTGCACCATAGTG
Found at i:6903263 original size:21 final size:21
Alignment explanation
Indices: 6903239--6903283 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6903229 TTTTGTTCGT
* *
6903239 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
6903260 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
6903281 TTG
1 TTG
6903284 CCAGAAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:6903851 original size:24 final size:23
Alignment explanation
Indices: 6903810--6903863 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
6903800 TCCCTTAAAC
* *
6903810 AAAAGAATAAAATCTTCTCTTAG
1 AAAAGACTAAAATATTCTCTTAG
6903833 AAAAGACTAAAAATATTCTCTTAG
1 AAAAGACT-AAAATATTCTCTTAG
6903857 AAAAGAC
1 AAAAGAC
6903864 CATAATACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.26
Consensus pattern (23 bp):
AAAAGACTAAAATATTCTCTTAG
Found at i:6904237 original size:16 final size:16
Alignment explanation
Indices: 6904198--6904240 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
6904188 ATCATCAGTT
*
6904198 CTTATCACTCAAAATC
1 CTTATCAATCAAAATC
* *
6904214 ATTAATCAATCAAATTC
1 CTT-ATCAATCAAAATC
6904231 CTTATCAATC
1 CTTATCAATC
6904241 TTTAATTACC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (16 bp):
CTTATCAATCAAAATC
Found at i:6906599 original size:23 final size:23
Alignment explanation
Indices: 6906565--6906648 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
6906555 CTCATATAAA
*
6906565 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
*
6906588 TGCATCGTAGTGCCACGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
* *
6906611 TGCACCGTAGTACCGCGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
6906634 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
6906649 TATAATAATG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGTAGTGCCACGTAGAAT
Found at i:6908364 original size:21 final size:21
Alignment explanation
Indices: 6908340--6908384 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6908330 TTTTGTTCGT
* *
6908340 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
6908361 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
6908382 TTG
1 TTG
6908385 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:6911659 original size:11 final size:11
Alignment explanation
Indices: 6911643--6911705 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
6911633 AAAATTACAT
6911643 TATTAAAAATA
1 TATTAAAAATA
6911654 TATTAAAAATA
1 TATTAAAAATA
* ***
6911665 CATTATTGATA
1 TATTAAAAATA
6911676 -ATTATAAAAT-
1 TATTA-AAAATA
*
6911686 T-TTAAATATA
1 TATTAAAAATA
6911696 TATTAAAAAT
1 TATTAAAAAT
6911706 TCTATAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
9 4 0.10
10 8 0.21
11 27 0.69
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (11 bp):
TATTAAAAATA
Found at i:6914126 original size:11 final size:12
Alignment explanation
Indices: 6914105--6914155 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 12
6914095 TTTCATAAAC
6914105 ATAATAAAATAAT
1 ATAA-AAAATAAT
6914118 ATAAAAATATAAT
1 ATAAAAA-ATAAT
6914131 ATAAAAAATTAAT
1 ATAAAAAA-TAAT
*
6914144 CTTAAAAAATAA
1 -ATAAAAAATAA
6914156 ACACATACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
12 4 0.12
13 23 0.68
14 7 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAAAAAATAAT
Found at i:6914139 original size:14 final size:14
Alignment explanation
Indices: 6914113--6914154 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
6914103 ACATAATAAA
6914113 ATAATAT-AAAAAT
1 ATAATATAAAAAAT
6914126 ATAATATAAAAAAT
1 ATAATATAAAAAAT
*
6914140 -TAATCTTAAAAAAT
1 ATAAT-ATAAAAAAT
6914154 A
1 A
6914155 AACACATACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAATATAAAAAAT
Found at i:6921029 original size:101 final size:101
Alignment explanation
Indices: 6920854--6921049 Score: 365
Period size: 101 Copynumber: 1.9 Consensus size: 101
6920844 GTCGAATAAG
* *
6920854 TTGGTGTTTTAAACAAGGTGGTGTGTTGAAGGATGTTGTTAGTGGGAGAGTTTGCAGTAGGGGGA
1 TTGGTGTTTTAAACAAGGTGGTGTGTTGAAGGATGTTGTAAGTGGGAGAGTTTGCAATAGGGGGA
*
6920919 ATGTTGGTGCATGGCCTCGTATGTGTTGAACATATA
66 ATGTTGGTGCATGGCCTCGCATGTGTTGAACATATA
6920955 TTGGTGTTTTAAACAAGGTGGTGTGTTGAAGGATGTTGTAAGTGGGAGAGTTTGCAATAGGGGGA
1 TTGGTGTTTTAAACAAGGTGGTGTGTTGAAGGATGTTGTAAGTGGGAGAGTTTGCAATAGGGGGA
6921020 ATGTTGGTGCATGGCCTCGCATGTGTTGAA
66 ATGTTGGTGCATGGCCTCGCATGTGTTGAA
6921050 AAGTGTTGAA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 92 1.00
ACGTcount: A:0.22, C:0.07, G:0.37, T:0.34
Consensus pattern (101 bp):
TTGGTGTTTTAAACAAGGTGGTGTGTTGAAGGATGTTGTAAGTGGGAGAGTTTGCAATAGGGGGA
ATGTTGGTGCATGGCCTCGCATGTGTTGAACATATA
Found at i:6924166 original size:19 final size:21
Alignment explanation
Indices: 6924142--6924182 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6924132 CCGTCCCCGA
6924142 ACCTG-ACCCG-AAATATTAT
1 ACCTGAACCCGAAAATATTAT
6924161 ACCTGAACCCGAAAATATTAT
1 ACCTGAACCCGAAAATATTAT
6924182 A
1 A
6924183 TATATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 10 0.50
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (21 bp):
ACCTGAACCCGAAAATATTAT
Found at i:6924215 original size:34 final size:34
Alignment explanation
Indices: 6924172--6924237 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
6924162 CCTGAACCCG
6924172 AAAATATTATATATATAATTAATATAAAATATAT
1 AAAATATTATATATATAATTAATATAAAATATAT
6924206 AAAATATTATATATATAATTAATATAAAATAT
1 AAAATATTATATATATAATTAATATAAAATAT
6924238 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (34 bp):
AAAATATTATATATATAATTAATATAAAATATAT
Found at i:6927717 original size:20 final size:20
Alignment explanation
Indices: 6927694--6927807 Score: 201
Period size: 20 Copynumber: 5.7 Consensus size: 20
6927684 TGCGAACACA
6927694 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
6927714 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACGCGTATCCG
6927734 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
6927754 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
6927774 TATATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
6927794 TAAATCGCAACGCG
1 TAAATCGCAACGCG
6927808 ATTTTTAAAG
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 88 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:6927741 original size:60 final size:59
Alignment explanation
Indices: 6927656--6927808 Score: 198
Period size: 60 Copynumber: 2.6 Consensus size: 59
6927646 GATTTTCCAG
* ** * *
6927656 AATCGCAACGCGGATATGAAAATCGCAATGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAAC-CATAAATCGCAACGCGTATCCGTA
* * * *
6927716 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATCCGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATAAATCGCAACGCGTATCCGTA
*
6927776 TATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
6927809 TTTTTAAAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
59 1 0.01
60 78 0.96
61 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (59 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACCATAAATCGCAACGCGTATCCGTA
Done.