Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 49
Found at i:7100098 original size:12 final size:12
Alignment explanation
Indices: 7100078--7100111 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7100068 TTCGTGCGAT
7100078 TTTTCGTTATAAA
1 TTTT-GTTATAAA
7100091 TTTTGTTATAAA
1 TTTTGTTATAAA
*
7100103 TTTTTTTAT
1 TTTTGTTAT
7100112 TATACTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (12 bp):
TTTTGTTATAAA
Found at i:7101758 original size:17 final size:18
Alignment explanation
Indices: 7101738--7101776 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7101728 ATTATATTAA
7101738 TAAAAT-ATTAAATAAAG
1 TAAAATGATTAAATAAAG
* *
7101755 TAAAATGTTTAAATAAAT
1 TAAAATGATTAAATAAAG
7101773 TAAA
1 TAAA
7101777 TACATAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
TAAAATGATTAAATAAAG
Found at i:7101833 original size:10 final size:10
Alignment explanation
Indices: 7101818--7101845 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7101808 CTTAAATAGA
7101818 GAGAGAATTT
1 GAGAGAATTT
7101828 GAGAGAATTT
1 GAGAGAATTT
7101838 GAGAGAAT
1 GAGAGAAT
7101846 ATGGTGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:7102103 original size:2 final size:2
Alignment explanation
Indices: 7102092--7102152 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
7102082 CAATTATTTT
7102092 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7102133 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
7102153 ATTTTAGATA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7102244 original size:3 final size:3
Alignment explanation
Indices: 7102236--7102263 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7102226 TAGGGATGAC
7102236 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA A
7102264 AACCCTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:7111865 original size:12 final size:13
Alignment explanation
Indices: 7111834--7111866 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7111824 TAAGATTTTC
7111834 TTTGACAATCAAGT
1 TTTGA-AATCAAGT
7111848 TTTGAAATCAAG-
1 TTTGAAATCAAGT
7111860 TTTGAAA
1 TTTGAAA
7111867 AATTACTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 7 0.37
14 5 0.26
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (13 bp):
TTTGAAATCAAGT
Found at i:7112266 original size:14 final size:15
Alignment explanation
Indices: 7112247--7112275 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7112237 TCAAACATTT
7112247 AACAATCCA-AAACA
1 AACAATCCAGAAACA
7112261 AACAATCCAGAAACA
1 AACAATCCAGAAACA
7112276 TCAAAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.28, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Found at i:7112629 original size:21 final size:21
Alignment explanation
Indices: 7112605--7112648 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7112595 CCGGTGCCGG
* *
7112605 AGGAGGAGCACGAGAAGAGCT
1 AGGAGCAGCACGAGAAGAACT
* *
7112626 AGGAGCAGCTCGTGAAGAACT
1 AGGAGCAGCACGAGAAGAACT
7112647 AG
1 AG
7112649 CTCCCGAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.39, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAACT
Found at i:7113911 original size:21 final size:21
Alignment explanation
Indices: 7113887--7113935 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
7113877 TATAATGTTC
7113887 ATCCTAGAACTAATTAAAACT
1 ATCCTAGAACTAATTAAAACT
7113908 ATCCTAGAACTAATTAAAACT
1 ATCCTAGAACTAATTAAAACT
7113929 AGTCCTA
1 A-TCCTA
7113936 AGATCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.29
Consensus pattern (21 bp):
ATCCTAGAACTAATTAAAACT
Found at i:7114272 original size:44 final size:42
Alignment explanation
Indices: 7114221--7114316 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 42
7114211 GGCCTTGTGC
*
7114221 ATCGATGCATATTCAATGCATGCATCGGTGCACCT-TCATGGTGT
1 ATCGATGCATATTCAA-GCATGCATCGATGCA-CTGTCA-GGTGT
* * *
7114265 ATCGATGCACATTCAAGGATGCATCGATGCACTGTTAGGTGT
1 ATCGATGCATATTCAAGCATGCATCGATGCACTGTCAGGTGT
7114307 ATCGATGCAT
1 ATCGATGCAT
7114317 TAAGCACAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 16 0.35
43 15 0.33
44 15 0.33
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (42 bp):
ATCGATGCATATTCAAGCATGCATCGATGCACTGTCAGGTGT
Found at i:7114312 original size:20 final size:21
Alignment explanation
Indices: 7114221--7114315 Score: 68
Period size: 21 Copynumber: 4.4 Consensus size: 21
7114211 GGCCTTGTGC
* * *
7114221 ATCGATGCATATTCAATGCATGC
1 ATCGATGCACATTCAA-G-GTGT
* * *
7114244 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGTGT
*
7114265 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATTCAAGG-TGT
*
7114287 ATCGATGCAC-TGT-TAGGTGT
1 ATCGATGCACAT-TCAAGGTGT
7114307 ATCGATGCA
1 ATCGATGCA
7114316 TTAAGCACAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
20 11 0.19
21 21 0.36
22 14 0.24
23 12 0.21
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (21 bp):
ATCGATGCACATTCAAGGTGT
Found at i:7120139 original size:64 final size:63
Alignment explanation
Indices: 7120069--7120279 Score: 212
Period size: 64 Copynumber: 3.3 Consensus size: 63
7120059 TGGACCCTTA
* * *
7120069 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATACATTCGATGTTTCAAAATACCCAGAGTGCATCGATGCATGG-TG
* **
7120133 GTGCATCGATGCATCAAATACATTCGAAGTTTTCATTAAA-ACCCTCAGTGCATCGATGCATGGT
1 GTGCATCGATGCATCAAATACATTCGATG-TTTCA--AAATACCCAGAGTGCATCGATGCATGGT
*
7120197 AT
63 -G
* ** *
7120199 GTGCATCGATGCATGAAATACATTCGATG-TTCAATTTATTCCATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATCAAATACATTCGATGTTTCAAAATA-CCCA-GAGTGCATCGATGCATGG--
7120262 TG
62 TG
*
7120264 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
7120280 CTATGAAAAA
Statistics
Matches: 121, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 48 0.40
65 20 0.17
66 48 0.40
67 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATACATTCGATGTTTCAAAATACCCAGAGTGCATCGATGCATGGTG
Found at i:7126608 original size:2 final size:2
Alignment explanation
Indices: 7126601--7126630 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7126591 AGTATATGTG
7126601 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7126631 GAACATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7128795 original size:14 final size:13
Alignment explanation
Indices: 7128767--7128799 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7128757 ATTACAGAAG
7128767 TTGAAA-CAACCA
1 TTGAAATCAACCA
7128779 TTGAAATCAATCCA
1 TTGAAATCAA-CCA
7128793 TTGAAAT
1 TTGAAAT
7128800 ACTACCGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 3 0.16
14 10 0.53
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (13 bp):
TTGAAATCAACCA
Found at i:7132807 original size:16 final size:18
Alignment explanation
Indices: 7132788--7132865 Score: 62
Period size: 16 Copynumber: 4.5 Consensus size: 18
7132778 ACAATTTAAA
7132788 TAAATTA-ATTAAT-TAT
1 TAAATTATATTAATATAT
7132804 TAAATTATATTAATATAT
1 TAAATTATATTAATATAT
*
7132822 T--ATTTTATTACA-AT-T
1 TAAATTATATTA-ATATAT
7132837 TAAATAAATATATTAAT-TAT
1 TAAAT---TATATTAATATAT
7132857 TAAATTATA
1 TAAATTATA
7132866 GTTATTGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 19
0.70 0.03 0.27
Matches are distributed among these distances:
15 2 0.04
16 17 0.34
17 13 0.26
18 4 0.08
19 2 0.04
20 12 0.24
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATTATATTAATATAT
Found at i:7132817 original size:21 final size:20
Alignment explanation
Indices: 7132783--7132825 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7132773 GTATTACAAT
7132783 TTAAATAAATTAAT-TAATTA
1 TTAAATAAATTAATAT-ATTA
*
7132803 TTAAATTATATTAATATATTA
1 TTAAA-TAAATTAATATATTA
7132824 TT
1 TT
7132826 TTATTACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 14 0.70
22 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAAATAAATTAATATATTA
Found at i:7132880 original size:53 final size:53
Alignment explanation
Indices: 7132774--7132881 Score: 159
Period size: 53 Copynumber: 2.0 Consensus size: 53
7132764 TATTTTATTG
*
7132774 TATTACAATTTAAATAAATTAATTAATTATTAAATTATATTAATATATTATTT
1 TATTACAATTTAAATAAATTAATTAATTATTAAATTATATTAATATATAATTT
7132827 TATTACAATTTAAATAAA-TATATTAATTATTAAATTATAGTT-AT-TGATAATTT
1 TATTACAATTTAAATAAATTA-ATTAATTATTAAATTATA-TTAATAT-ATAATTT
7132880 TA
1 TA
7132882 ATAATATATA
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
52 3 0.06
53 46 0.90
54 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (53 bp):
TATTACAATTTAAATAAATTAATTAATTATTAAATTATATTAATATATAATTT
Found at i:7133005 original size:14 final size:15
Alignment explanation
Indices: 7132988--7133023 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7132978 AAATTTAATA
*
7132988 TAATATTAT-TATTT
1 TAATATTATAAATTT
7133002 TAATATTATAAATTT
1 TAATATTATAAATTT
7133017 TAATATT
1 TAATATT
7133024 TTAATAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TAATATTATAAATTT
Found at i:7133018 original size:15 final size:14
Alignment explanation
Indices: 7132967--7133028 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
7132957 ATATTTAAAA
*
7132967 TATAATTCTTAAAAT
1 TATAATT-TTAATAT
*
7132982 T-TAA-TATAATAT
1 TATAATTTTAATAT
*
7132994 TATTATTTTAATAT
1 TATAATTTTAATAT
7133008 TATAAATTTTAATAT
1 TAT-AATTTTAATAT
*
7133023 TTTAAT
1 TATAAT
7133029 AAGTAATTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
12 6 0.16
13 3 0.08
14 16 0.42
15 13 0.34
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (14 bp):
TATAATTTTAATAT
Found at i:7133024 original size:8 final size:8
Alignment explanation
Indices: 7132997--7133029 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7132987 ATAATATTAT
7132997 TATTTTAA
1 TATTTTAA
*
7133005 TATTATAA
1 TATTTTAA
7133013 -ATTTTAA
1 TATTTTAA
7133020 TATTTTAA
1 TATTTTAA
7133028 TA
1 TA
7133030 AGTAATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTTTAA
Found at i:7135458 original size:23 final size:23
Alignment explanation
Indices: 7135395--7135473 Score: 90
Period size: 23 Copynumber: 3.4 Consensus size: 23
7135385 AGTTTACACT
7135395 GAAGTGCCACGTAGAATTTGTC-CC
1 GAAGTGCCACGTAGAA-TTG-CACC
* *
7135419 GGAG-GACCGCGTAGAATTGCACC
1 GAAGTG-CCACGTAGAATTGCACC
7135442 GAAGTGCCACGTAGAATTGCACC
1 GAAGTGCCACGTAGAATTGCACC
*
7135465 GTAGTGCCA
1 GAAGTGCCA
7135474 TATAAGATTG
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
22 1 0.02
23 33 0.70
24 13 0.28
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.19
Consensus pattern (23 bp):
GAAGTGCCACGTAGAATTGCACC
Found at i:7135844 original size:27 final size:27
Alignment explanation
Indices: 7135813--7135866 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7135803 CTCATAGACA
7135813 TATATTCTTTCTCACATAGTCACATAG
1 TATATTCTTTCTCACATAGTCACATAG
7135840 TATATTCTTTCTCACATAGTCACATAG
1 TATATTCTTTCTCACATAGTCACATAG
7135867 GTCTATATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TATATTCTTTCTCACATAGTCACATAG
Found at i:7137796 original size:19 final size:19
Alignment explanation
Indices: 7137772--7137813 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7137762 ACAACTGTTC
*
7137772 AATCTAGGGAATATGCCCT
1 AATCTAGGGAACATGCCCT
7137791 AATCTAGGGAACATGCCCT
1 AATCTAGGGAACATGCCCT
7137810 AATC
1 AATC
7137814 AATTAATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (19 bp):
AATCTAGGGAACATGCCCT
Found at i:7140450 original size:19 final size:21
Alignment explanation
Indices: 7140422--7140473 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
7140412 ATATATGTTT
7140422 TATG-AATAGTAAAA-TACGG
1 TATGAAATAGTAAAAGTACGG
*
7140441 TAT-AAATAGTGAAAAGTACTG
1 TATGAAATAGT-AAAAGTACGG
7140462 TATGAAA-AGTAA
1 TATGAAATAGTAA
7140474 TGAAAAGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 9 0.32
20 6 0.21
21 10 0.36
22 3 0.11
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.27
Consensus pattern (21 bp):
TATGAAATAGTAAAAGTACGG
Found at i:7141425 original size:23 final size:23
Alignment explanation
Indices: 7141395--7141438 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7141385 CGGAGGACCG
7141395 CGTAGAATTGCACCGAAGTGCTA
1 CGTAGAATTGCACCGAAGTGCTA
*
7141418 CGTAGAATTGCACCGTAGTGC
1 CGTAGAATTGCACCGAAGTGC
7141439 CATATAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCTA
Found at i:7142520 original size:21 final size:21
Alignment explanation
Indices: 7142494--7142534 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7142484 TTTTTCATTT
7142494 AGGGGGGAATC-GATACCCCCC
1 AGGGGGGAATCTG-TACCCCCC
7142515 AGGGGGGAATCTGTACCCCC
1 AGGGGGGAATCTGTACCCCC
7142535 TGCGTAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.22, C:0.32, G:0.34, T:0.12
Consensus pattern (21 bp):
AGGGGGGAATCTGTACCCCCC
Found at i:7143963 original size:22 final size:21
Alignment explanation
Indices: 7143938--7143995 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
7143928 ATTCATATAT
*
7143938 TCGGGTCGGGTCGGTTTGGTTC
1 TCGGGTCGGGTCGGCTT-GTTC
* *
7143960 TCGGGTGGAGGTTC-CCTTGTTC
1 TCGGGTCG-GG-TCGGCTTGTTC
7143982 TCGGGTCGGGTCGG
1 TCGGGTCGGGTCGG
7143996 GTGGACCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 7
0.70 0.12 0.17
Matches are distributed among these distances:
20 2 0.07
21 2 0.07
22 18 0.64
23 4 0.14
24 2 0.07
ACGTcount: A:0.02, C:0.21, G:0.45, T:0.33
Consensus pattern (21 bp):
TCGGGTCGGGTCGGCTTGTTC
Found at i:7151533 original size:21 final size:21
Alignment explanation
Indices: 7151509--7151560 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
7151499 GTCCCAAAAG
* * *
7151509 ACCTCATGTATGTCTCTAAGA
1 ACCTCATATATGTCCCGAAGA
* *
7151530 ACCTCGTATATGTCCCGAAGG
1 ACCTCATATATGTCCCGAAGA
7151551 ACCTCATATA
1 ACCTCATATA
7151561 ACCCTCGACT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (21 bp):
ACCTCATATATGTCCCGAAGA
Found at i:7152630 original size:21 final size:21
Alignment explanation
Indices: 7152604--7152643 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7152594 AAAATTGTGT
7152604 ATCGATGCACTA-CTACAGTGC
1 ATCGATGCAC-AGCTACAGTGC
7152625 ATCGATGCACAGCTACAGT
1 ATCGATGCACAGCTACAGT
7152644 AAATTCCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (21 bp):
ATCGATGCACAGCTACAGTGC
Found at i:7156250 original size:45 final size:45
Alignment explanation
Indices: 7156199--7156299 Score: 157
Period size: 45 Copynumber: 2.2 Consensus size: 45
7156189 ACATGTATAT
* *
7156199 CCAATATATTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTA
1 CCAATATACTTACCATATATCCCATAAGCTCGTAAGCTTATTTTA
* *
7156244 CCAATATACTTACCATATGTTCCATAAGCTCGTAAGCTTATTTTA
1 CCAATATACTTACCATATATCCCATAAGCTCGTAAGCTTATTTTA
*
7156289 CCAATACACTT
1 CCAATATACTT
7156300 GTCATTATTC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (45 bp):
CCAATATACTTACCATATATCCCATAAGCTCGTAAGCTTATTTTA
Found at i:7156336 original size:20 final size:20
Alignment explanation
Indices: 7156311--7156353 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7156301 TCATTATTCC
* *
7156311 ATAACCATATACCATAGAAA
1 ATAACCATAAACAATAGAAA
*
7156331 ATAACCATAAACAATAGACA
1 ATAACCATAAACAATAGAAA
7156351 ATA
1 ATA
7156354 GCCCAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.58, C:0.19, G:0.05, T:0.19
Consensus pattern (20 bp):
ATAACCATAAACAATAGAAA
Found at i:7156507 original size:59 final size:59
Alignment explanation
Indices: 7156415--7156544 Score: 154
Period size: 59 Copynumber: 2.2 Consensus size: 59
7156405 TCGTAGTGCT
* * ** *
7156415 ATCCC-AAGTATGACACATAAGGTCGTGTCCACCATCTGTACTATGTATCCTTAAGTACA
1 ATCCCGAA-TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACA
* * **
7156474 ATCCCGAATATGACACATAAGTTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTA
1 ATCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACA
*
7156533 TTCCCGAATATG
1 ATCCCGAATATG
7156545 CAGCCTGCTG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 58 0.97
60 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (59 bp):
ATCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACA
Found at i:7160550 original size:51 final size:43
Alignment explanation
Indices: 7160455--7160561 Score: 124
Period size: 51 Copynumber: 2.3 Consensus size: 43
7160445 ATAACTAATG
*
7160455 AATAAAATAATAATAAACTAAACATGTTTTAATTCTAATTCCT
1 AATAAAATAATAATAAACTAAAAATGTTTTAATTCTAATTCCT
7160498 AATAAAATAATAATAAACTAAGAATAATGTTTTAACTAGATCTTAATTCCT
1 AATAAAATAATAATAAACT-A-AA-AATGTTTTAA-T---TC-TAATTCCT
*
7160549 AATAAATTAATAA
1 AATAAAATAATAA
7160562 ATCTAATTGC
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
43 19 0.35
44 1 0.02
45 2 0.04
46 9 0.17
47 1 0.02
50 2 0.04
51 20 0.37
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (43 bp):
AATAAAATAATAATAAACTAAAAATGTTTTAATTCTAATTCCT
Found at i:7162197 original size:15 final size:15
Alignment explanation
Indices: 7162177--7162206 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7162167 CATAGTTTTA
7162177 TTAAATTAATATAAT
1 TTAAATTAATATAAT
*
7162192 TTAAATTGATATAAT
1 TTAAATTAATATAAT
7162207 GATAAATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
TTAAATTAATATAAT
Found at i:7165915 original size:22 final size:20
Alignment explanation
Indices: 7165878--7165917 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7165868 TGTTATTTTA
*
7165878 TTTTTTAACATCTATTTATT
1 TTTTTTAAAATCTATTTATT
7165898 TTTTTTCAAAATCATATTTA
1 TTTTTT-AAAATC-TATTTA
7165918 ATGTTACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTTAAAATCTATTTATT
Found at i:7168472 original size:20 final size:21
Alignment explanation
Indices: 7168442--7168482 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
7168432 AGAGTGCATC
7168442 GATATGATAGATATAGAAATA
1 GATATGATAGATATAGAAATA
7168463 GATA-GATAGATATAGAAATA
1 GATATGATAGATATAGAAATA
7168483 TGATGCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.27
Consensus pattern (21 bp):
GATATGATAGATATAGAAATA
Found at i:7172579 original size:10 final size:10
Alignment explanation
Indices: 7172555--7172618 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
7172545 TGCTTTCTCT
*
7172555 TTGATTCTCTC
1 TTGATTCT-TG
7172566 TTGATTCTTG
1 TTGATTCTTG
*
7172576 TTGATACTTG
1 TTGATTCTTG
** *
7172586 TTTCTTGTTG
1 TTGATTCTTG
7172596 TTTGATTCTTG
1 -TTGATTCTTG
*
7172607 TTGATACTTG
1 TTGATTCTTG
7172617 TT
1 TT
7172619 TCTTGTTGTT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
10 27 0.64
11 15 0.36
ACGTcount: A:0.11, C:0.12, G:0.17, T:0.59
Consensus pattern (10 bp):
TTGATTCTTG
Found at i:7172590 original size:17 final size:17
Alignment explanation
Indices: 7172565--7172626 Score: 85
Period size: 17 Copynumber: 3.8 Consensus size: 17
7172555 TTGATTCTCT
7172565 CTTGATTCTTGTTGATA
1 CTTGATTCTTGTTGATA
*
7172582 CTTGTTTCTTGTTG-T-
1 CTTGATTCTTGTTGATA
7172597 -TTGATTCTTGTTGATA
1 CTTGATTCTTGTTGATA
*
7172613 CTTGTTTCTTGTTG
1 CTTGATTCTTGTTG
7172627 TTGATCAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
14 12 0.31
15 1 0.03
16 1 0.03
17 25 0.64
ACGTcount: A:0.10, C:0.11, G:0.19, T:0.60
Consensus pattern (17 bp):
CTTGATTCTTGTTGATA
Found at i:7172601 original size:31 final size:31
Alignment explanation
Indices: 7172566--7172628 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7172556 TGATTCTCTC
7172566 TTGATTCTTGTTGATACTTGTTTCTTGTTGT
1 TTGATTCTTGTTGATACTTGTTTCTTGTTGT
7172597 TTGATTCTTGTTGATACTTGTTTCTTGTTGT
1 TTGATTCTTGTTGATACTTGTTTCTTGTTGT
7172628 T
1 T
7172629 GATCAATGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.10, C:0.10, G:0.19, T:0.62
Consensus pattern (31 bp):
TTGATTCTTGTTGATACTTGTTTCTTGTTGT
Found at i:7173870 original size:18 final size:18
Alignment explanation
Indices: 7173849--7173887 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7173839 GCATTTGATA
*
7173849 CTCTGGACGAGGTTGTTC
1 CTCTGGACGAGCTTGTTC
* *
7173867 CTCTGGAGGTGCTTGTTC
1 CTCTGGACGAGCTTGTTC
7173885 CTC
1 CTC
7173888 GTGCTGCTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.26, G:0.31, T:0.36
Consensus pattern (18 bp):
CTCTGGACGAGCTTGTTC
Found at i:7175500 original size:23 final size:22
Alignment explanation
Indices: 7175451--7175540 Score: 108
Period size: 22 Copynumber: 4.0 Consensus size: 22
7175441 AAGAACCTCC
* *
7175451 AGGGGGTATCGATTCCCCTACA
1 AGGGGGAATCGATTCCCCTTCA
* *
7175473 GGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGATTCCCCTTC-A
*
7175496 AGGGGGAATCGGTTCCCCTTCA
1 AGGGGGAATCGATTCCCCTTCA
*
7175518 AGGGGGCATCGATTCCCTCTTCA
1 AGGGGGAATCGATTCCC-CTTCA
7175541 CCAAAACTGA
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
22 33 0.56
23 26 0.44
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (22 bp):
AGGGGGAATCGATTCCCCTTCA
Found at i:7175523 original size:45 final size:46
Alignment explanation
Indices: 7175451--7175540 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 46
7175441 AAGAACCTCC
* * *
7175451 AGGGGGTATCGATTCCCCTACAGGGGGGAATCGGTTCCC-CTTCAA
1 AGGGGGAATCGATTCCCCTACAAGGGGGAATCGATTCCCTCTTCAA
* * *
7175496 AGGGGGAATCGGTTCCCCTTCAAGGGGGCATCGATTCCCTCTTCA
1 AGGGGGAATCGATTCCCCTACAAGGGGGAATCGATTCCCTCTTCA
7175541 CCAAAACTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
45 33 0.87
46 5 0.13
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (46 bp):
AGGGGGAATCGATTCCCCTACAAGGGGGAATCGATTCCCTCTTCAA
Found at i:7179392 original size:22 final size:21
Alignment explanation
Indices: 7179350--7179389 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7179340 GAGATTCTTT
*
7179350 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
7179371 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7179390 ATAACTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:7185815 original size:31 final size:31
Alignment explanation
Indices: 7185748--7185807 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
7185738 CAATTTAAGG
*
7185748 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7185779 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7185808 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:7185899 original size:19 final size:19
Alignment explanation
Indices: 7185872--7185920 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 19
7185862 AATGTTTTTA
*
7185872 TGAATAGTAATTTACTATT
1 TGAACAGTAATTTACTATT
7185891 TGAACAGTAAATTTACTATT
1 TGAACAGT-AATTTACTATT
7185911 TGAACAGTAA
1 TGAACAGTAA
7185921 ATCACTGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (19 bp):
TGAACAGTAATTTACTATT
Found at i:7185905 original size:20 final size:20
Alignment explanation
Indices: 7185880--7185922 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
7185870 TATGAATAGT
7185880 AATTTACTATTTGAACAGTA
1 AATTTACTATTTGAACAGTA
7185900 AATTTACTATTTGAACAGTA
1 AATTTACTATTTGAACAGTA
7185920 AAT
1 AAT
7185923 CACTGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (20 bp):
AATTTACTATTTGAACAGTA
Found at i:7185965 original size:21 final size:21
Alignment explanation
Indices: 7185939--7185980 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7185929 TTTTGAATAT
*
7185939 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7185960 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7185981 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7190977 original size:20 final size:20
Alignment explanation
Indices: 7190948--7190986 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7190938 TTTCCACCAC
*
7190948 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
7190968 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
7190987 TATAGGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:7192957 original size:13 final size:13
Alignment explanation
Indices: 7192939--7192987 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
7192929 AATTAAAATA
*
7192939 ATTAAATAGAAAC
1 ATTAAATACAAAC
7192952 ATTAAATACAAAC
1 ATTAAATACAAAC
* *
7192965 GTTACAATTCAAAC
1 ATTA-AATACAAAC
7192979 AATTAAATA
1 -ATTAAATA
7192988 ATAACAACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 15 0.52
14 11 0.38
15 3 0.10
ACGTcount: A:0.57, C:0.12, G:0.04, T:0.27
Consensus pattern (13 bp):
ATTAAATACAAAC
Found at i:7193283 original size:17 final size:16
Alignment explanation
Indices: 7193263--7193294 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7193253 TCAATTTATC
7193263 CAAAAAAAACTAAGAAA
1 CAAAAAAAA-TAAGAAA
7193280 CAAAAAAAATAAGAA
1 CAAAAAAAATAAGAA
7193295 GTACATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.78, C:0.09, G:0.06, T:0.06
Consensus pattern (16 bp):
CAAAAAAAATAAGAAA
Found at i:7206609 original size:26 final size:27
Alignment explanation
Indices: 7206566--7206619 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
7206556 GAAAATATCT
*
7206566 AAAATATATGAAGCAAAATCAACATGA
1 AAAATATATGAAGAAAAATCAACATGA
*
7206593 AAAATAT-TGCAGAAAAATCAACATGA
1 AAAATATATGAAGAAAAATCAACATGA
7206619 A
1 A
7206620 GCTCAAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.19
Consensus pattern (27 bp):
AAAATATATGAAGAAAAATCAACATGA
Found at i:7211944 original size:7 final size:7
Alignment explanation
Indices: 7211932--7211956 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7211922 TAGAGCTTGA
7211932 AATCATG
1 AATCATG
7211939 AATCATG
1 AATCATG
7211946 AATCATG
1 AATCATG
7211953 AATC
1 AATC
7211957 GTGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (7 bp):
AATCATG
Found at i:7215096 original size:4 final size:4
Alignment explanation
Indices: 7215087--7215124 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
7215077 ATTTGGTCAT
7215087 ATTA ATTA ATTA ATTA ATTA ATTA ATT- ATTA A-TA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA
7215125 TAAAAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.19
4 26 0.81
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:7217168 original size:16 final size:16
Alignment explanation
Indices: 7217147--7217181 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7217137 ATTATTTGTG
* *
7217147 AAAACAGAAAAGAATT
1 AAAACAAAAAAGAAAT
7217163 AAAACAAAAAAGAAAT
1 AAAACAAAAAAGAAAT
7217179 AAA
1 AAA
7217182 GGAATGCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAACAAAAAAGAAAT
Found at i:7225361 original size:21 final size:21
Alignment explanation
Indices: 7225337--7225404 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
7225327 CAAGAGATGA
7225337 CAACTTTTATGTCTCATATGC
1 CAACTTTTATGTCTCATATGC
** * *
7225358 CAACATGATTT-T-TCAAGAGATGA
1 CAAC-T--TTTATGTC-TCATATGC
7225381 CAACTTTTATGTCTCATATGC
1 CAACTTTTATGTCTCATATGC
7225402 CAA
1 CAA
7225405 ACATGAATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
20 3 0.09
21 12 0.36
22 6 0.18
23 9 0.27
24 3 0.09
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (21 bp):
CAACTTTTATGTCTCATATGC
Found at i:7225373 original size:44 final size:44
Alignment explanation
Indices: 7225313--7225449 Score: 226
Period size: 44 Copynumber: 3.2 Consensus size: 44
7225303 AATAAACCCG
7225313 TGCCAAC-T-AATTTTCAAGAGATGACAACTTTTATGTCTCATA
1 TGCCAACATGAATTTTCAAGAGATGACAACTTTTATGTCTCATA
*
7225355 TGCCAACATGATTTTTCAAGAGATGACAACTTTTATGTCTCATA
1 TGCCAACATGAATTTTCAAGAGATGACAACTTTTATGTCTCATA
*
7225399 TGCCAAACATGAATTTTCAAGAGAT-ACAACTTTTATGTCTCGTA
1 TGCC-AACATGAATTTTCAAGAGATGACAACTTTTATGTCTCATA
7225443 TGCCAAC
1 TGCCAAC
7225450 TTACAATCAT
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
42 7 0.08
43 4 0.04
44 59 0.66
45 19 0.21
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (44 bp):
TGCCAACATGAATTTTCAAGAGATGACAACTTTTATGTCTCATA
Found at i:7225589 original size:64 final size:63
Alignment explanation
Indices: 7225502--7225627 Score: 164
Period size: 64 Copynumber: 2.0 Consensus size: 63
7225492 ACACTATTTC
* * ** *
7225502 ATGCCAACTTACAGTCACCCGAGAGAATAGAGTGGTGATTGTTTTTTTTACAATACCGGCTCCT
1 ATGCCAACTTACAGTCACACGAGAGAAAAGAGTGGTGACAG-TTTTTTTACAACACCGGCTCCT
* *
7225566 ATGCCAACTTATAGTTC-CACGAGAGAAAATAGTGGTGACAGTTTTTTTACAACACCGGCTCC
1 ATGCCAACTTACAG-TCACACGAGAGAAAAGAGTGGTGACAGTTTTTTTACAACACCGGCTCC
7225628 CATTCTTGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
63 20 0.37
64 32 0.59
65 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (63 bp):
ATGCCAACTTACAGTCACACGAGAGAAAAGAGTGGTGACAGTTTTTTTACAACACCGGCTCCT
Found at i:7225919 original size:69 final size:69
Alignment explanation
Indices: 7225837--7225976 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
7225827 AAGTAAGATG
*
7225837 AATTTTATATTACTATGATAAATTATATAAAATATGAGATGAAATAAAATAAATATAAAAAAGAA
1 AATTTTATATTACTATGATAAATTATATAAAATATGAGATGAAATAAAATAAATACAAAAAAGAA
7225902 ATTT
66 ATTT
*
7225906 AATTTTATATTACTATGATAAATTATATAAAATATGAGATGAAATAAAATAAATACAAAAAATAA
1 AATTTTATATTACTATGATAAATTATATAAAATATGAGATGAAATAAAATAAATACAAAAAAGAA
7225971 ATTT
66 ATTT
7225975 AA
1 AA
7225977 ACGTGATTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.34
Consensus pattern (69 bp):
AATTTTATATTACTATGATAAATTATATAAAATATGAGATGAAATAAAATAAATACAAAAAAGAA
ATTT
Found at i:7226024 original size:33 final size:32
Alignment explanation
Indices: 7225982--7226043 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
7225972 TTTAAACGTG
*
7225982 ATTTTTTATTTTAATATTTAA-ATTAAAACTTTA
1 ATTTTTTATTTT-AT-TTTAATATGAAAACTTTA
7226015 ATTTTTTATTTTATTTTAATATGAAAACT
1 ATTTTTTATTTTATTTTAATATGAAAACT
7226044 CTCTACTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 5 0.19
32 10 0.37
33 12 0.44
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (32 bp):
ATTTTTTATTTTATTTTAATATGAAAACTTTA
Found at i:7230010 original size:29 final size:29
Alignment explanation
Indices: 7229962--7230052 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
7229952 ATGCACGTGA
7229962 ATGGATAGGTCGCCAGGGCATCCCAGCGAC
1 ATGG-TAGGTCGCCAGGGCATCCCAGCGAC
* * *
7229992 ATTGTAGGACGCCATGGCATCCCAGCGAC
1 ATGGTAGGTCGCCAGGGCATCCCAGCGAC
*
7230021 ATGGTAGGTCGCCAGGGCATCCGAGCGAC
1 ATGGTAGGTCGCCAGGGCATCCCAGCGAC
7230050 ATG
1 ATG
7230053 CATGCTTTGC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 51 0.94
30 3 0.06
ACGTcount: A:0.23, C:0.29, G:0.33, T:0.15
Consensus pattern (29 bp):
ATGGTAGGTCGCCAGGGCATCCCAGCGAC
Found at i:7230206 original size:23 final size:23
Alignment explanation
Indices: 7230165--7230223 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
7230155 TGAATTCAGC
* **
7230165 TGCATTATTACAGTACTTATTGCT
1 TGCATTATTGCAGCCCTTATTG-T
7230189 T-CATTATTGCAGCCCTTATTGT
1 TGCATTATTGCAGCCCTTATTGT
7230211 TGCATTATTGCAG
1 TGCATTATTGCAG
7230224 TCGTTCAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.06
23 28 0.90
24 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (23 bp):
TGCATTATTGCAGCCCTTATTGT
Found at i:7230462 original size:38 final size:39
Alignment explanation
Indices: 7230414--7230521 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
7230404 TTATTATTTT
** *
7230414 AAATTATTAGTTTGTTAGTTTA-TGGTTTAAAGTAAAACA
1 AAATT-TTAGTTAATTAGTTTAGTAGTTTAAAGTAAAACA
*
7230453 AAATTTTAGTTAATTAG-TTAGTTAGTTTAAGGTAAAACA
1 AAATTTTAGTTAATTAGTTTAG-TAGTTTAAAGTAAAACA
7230492 AAATTTTAGTTAATTAGTTT-GTTAGTTTAA
1 AAATTTTAGTTAATTAGTTTAG-TAGTTTAA
7230522 GTTATATTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
37 3 0.05
38 10 0.16
39 47 0.76
40 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (39 bp):
AAATTTTAGTTAATTAGTTTAGTAGTTTAAAGTAAAACA
Found at i:7230522 original size:39 final size:39
Alignment explanation
Indices: 7230438--7230522 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
7230428 TTAGTTTATG
*
7230438 GTTTAAAGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
1 GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
*
7230477 GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTTGTTA
1 GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
7230516 GTTTAAG
1 GTTTAAG
7230523 TTATATTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.42
Consensus pattern (39 bp):
GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
Found at i:7230534 original size:21 final size:21
Alignment explanation
Indices: 7230510--7230549 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7230500 GTTAATTAGT
7230510 TTGTTAGTTTAAGTTATATTA
1 TTGTTAGTTTAAGTTATATTA
7230531 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
7230550 GATACATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATTA
Found at i:7230636 original size:28 final size:27
Alignment explanation
Indices: 7230605--7230657 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
7230595 ATATTAAAAA
7230605 AATAATTAATTAGTGTGTTAGTTAGTCT
1 AATAATTAATTAGTGTG-TAGTTAGTCT
* *
7230633 AATATTTAATTAGTTTGTAGTTAGT
1 AATAATTAATTAGTGTGTAGTTAGT
7230658 TAAATAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (27 bp):
AATAATTAATTAGTGTGTAGTTAGTCT
Found at i:7230663 original size:27 final size:29
Alignment explanation
Indices: 7230604--7230668 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
7230594 TATATTAAAA
7230604 AAATAATTAATTAGTGTGTTAGTTAGTCT
1 AAATAATTAATTAGTGTGTTAGTTAGTCT
* *
7230633 -AATATTTAATTAGTTTG-TAGTTAGT-T
1 AAATAATTAATTAGTGTGTTAGTTAGTCT
*
7230659 AAATAGTTAA
1 AAATAATTAA
7230669 GTTATATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.03
27 16 0.50
28 15 0.47
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (29 bp):
AAATAATTAATTAGTGTGTTAGTTAGTCT
Found at i:7230827 original size:29 final size:30
Alignment explanation
Indices: 7230786--7230845 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
7230776 TAAAAGAATA
*
7230786 ATTATTTATATTAGTTTATTATTATAAATT
1 ATTAGTTATATTAGTTTATTATTATAAATT
7230816 ATTAGTTA-ATTAGTTTATTATTATAAATT
1 ATTAGTTATATTAGTTTATTATTATAAATT
7230845 A
1 A
7230846 GGGTAAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (30 bp):
ATTAGTTATATTAGTTTATTATTATAAATT
Found at i:7230899 original size:21 final size:21
Alignment explanation
Indices: 7230874--7230913 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7230864 GTTAATTAGT
7230874 TTGTTAGTTTAAGTTATATTA
1 TTGTTAGTTTAAGTTATATTA
7230895 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
7230914 CATATAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATTA
Found at i:7231167 original size:4 final size:4
Alignment explanation
Indices: 7231158--7231184 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7231148 GTGTTATAAA
7231158 TTAG TTAG TTAG TTAG TTAG TTAG TTA
1 TTAG TTAG TTAG TTAG TTAG TTAG TTA
7231185 ACATTAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TTAG
Found at i:7233384 original size:26 final size:25
Alignment explanation
Indices: 7233351--7233413 Score: 53
Period size: 24 Copynumber: 2.6 Consensus size: 25
7233341 GTATCAAATA
*
7233351 ATTA-AATATTAATAATAAATCATT
1 ATTATAATATTATTAATAAATCATT
**
7233375 ATTAATAATA--ATTACCAAATCATT
1 ATT-ATAATATTATTAATAAATCATT
7233399 ATTA-AATCATTATTA
1 ATTATAAT-ATTATTA
7233414 TCATTATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
22 3 0.10
23 2 0.06
24 17 0.55
25 5 0.16
26 4 0.13
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (25 bp):
ATTATAATATTATTAATAAATCATT
Found at i:7233405 original size:35 final size:35
Alignment explanation
Indices: 7233366--7233448 Score: 114
Period size: 34 Copynumber: 2.4 Consensus size: 35
7233356 ATATTAATAA
7233366 TAAATCATTATTAATAATAATTACCAAATCATTAT
1 TAAATCATTATTAATAATAATTACCAAATCATTAT
* * *
7233401 TAAATCATTATT-ATCATTATTATCAAATCATTAT
1 TAAATCATTATTAATAATAATTACCAAATCATTAT
*
7233435 TATAATGATTATTA
1 TA-AATCATTATTA
7233449 CTAAATCATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
34 21 0.50
35 21 0.50
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.45
Consensus pattern (35 bp):
TAAATCATTATTAATAATAATTACCAAATCATTAT
Found at i:7233428 original size:23 final size:23
Alignment explanation
Indices: 7233396--7233534 Score: 82
Period size: 23 Copynumber: 5.7 Consensus size: 23
7233386 TTACCAAATC
*
7233396 ATTATTAAATCATTATTATCATT
1 ATTATCAAATCATTATTATCATT
* *
7233419 ATTATCAAATCATTATTATAATG
1 ATTATCAAATCATTATTATCATT
*
7233442 ATTATTACTAAATCATTATTATAATGATT
1 ATTA-T-C-AAATCATTA-T-T-ATCATT
* * *
7233471 ATTAACAAATCATTACTAAATCATC
1 ATTATCAAATCATTA-T-TATCATT
* * **
7233496 AGTACATTAAAT-ATTAAAATCATT
1 A-T-TATCAAATCATTATTATCATT
7233520 ATTATCAAATCATTA
1 ATTATCAAATCATTA
7233535 CTAAATCATA
Statistics
Matches: 90, Mismatches: 17, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
22 6 0.07
23 29 0.32
24 8 0.09
25 6 0.07
26 25 0.28
27 7 0.08
28 1 0.01
29 8 0.09
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.42
Consensus pattern (23 bp):
ATTATCAAATCATTATTATCATT
Found at i:7233445 original size:26 final size:26
Alignment explanation
Indices: 7233396--7233485 Score: 116
Period size: 26 Copynumber: 3.6 Consensus size: 26
7233386 TTACCAAATC
* *
7233396 ATTATTAAATCATTA-T-T-ATCATT
1 ATTATCAAATCATTATTATAATGATT
7233419 ATTATCAAATCATTATTATAATGATT
1 ATTATCAAATCATTATTATAATGATT
7233445 ATTA-CTAAATCATTATTATAATGATT
1 ATTATC-AAATCATTATTATAATGATT
*
7233471 ATTAACAAATCATTA
1 ATTATCAAATCATTA
7233486 CTAAATCATC
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
23 14 0.23
24 1 0.02
25 2 0.03
26 42 0.70
27 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTATCAAATCATTATTATAATGATT
Found at i:7233554 original size:49 final size:49
Alignment explanation
Indices: 7233396--7233555 Score: 164
Period size: 49 Copynumber: 3.2 Consensus size: 49
7233386 TTACCAAATC
** * *
7233396 ATTATTAAATCATTATTATCATTATTATCAAATCATTATTATAATGAT-T
1 ATTATTAAATCATTAAAATCATTATTATCAAATCATTACTA-AATCATAT
* * *
7233445 ATTACTAAATCATTATTATAATGATTATTAACAAATCATTACTAAATCATCAGT
1 ATTATTAAATCATTA--A-AATCATTATTATCAAATCATTACTAAATCAT-A-T
*
7233499 A-CATTAAAT-ATTAAAATCATTATTATCAAATCATTACTAAATCATAT
1 ATTATTAAATCATTAAAATCATTATTATCAAATCATTACTAAATCATAT
7233546 AATTATTAAA
1 -ATTATTAAA
7233556 AAAACCCATG
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
47 1 0.01
48 2 0.02
49 49 0.54
50 1 0.01
51 5 0.05
52 25 0.27
53 6 0.07
54 2 0.02
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (49 bp):
ATTATTAAATCATTAAAATCATTATTATCAAATCATTACTAAATCATAT
Found at i:7235485 original size:20 final size:20
Alignment explanation
Indices: 7235454--7235550 Score: 100
Period size: 20 Copynumber: 5.2 Consensus size: 20
7235444 TTTTGGTTGA
7235454 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
***
7235474 AATGACTGTCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
7235494 AAATGAAAATCGCAAC--GAG
1 -AATGAAAATCGCAACGAGAG
*
7235513 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
7235528 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
7235548 AAT
1 AAT
7235551 CGCAACGCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
14 9 0.15
16 4 0.06
17 2 0.03
19 15 0.24
20 20 0.32
21 12 0.19
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:7235506 original size:21 final size:21
Alignment explanation
Indices: 7235452--7235516 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
7235442 TCTTTTGGTT
7235452 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
***
7235473 G-AATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
7235493 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
7235514 GAA
1 GAA
7235517 TCGCAACGCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.48, C:0.15, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:7235520 original size:14 final size:14
Alignment explanation
Indices: 7235501--7235557 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7235491 GAGAAATGAA
7235501 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7235515 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7235534 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7235548 AATCGCAACG
1 AATCGCAACG
7235558 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7235533 original size:33 final size:33
Alignment explanation
Indices: 7235452--7235574 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
7235442 TCTTTTGGTT
*
7235452 GAAATGAAAATCGCAACGAGAGAATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
7235493 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7235526 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7235559 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7235575 TGCGATTTTG
Statistics
Matches: 81, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
33 50 0.62
35 7 0.09
38 1 0.01
40 1 0.01
41 22 0.27
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7235650 original size:21 final size:20
Alignment explanation
Indices: 7235602--7235694 Score: 107
Period size: 21 Copynumber: 4.5 Consensus size: 20
7235592 GTTGCGATTC
7235602 TCTCGTTGCGATTTTCA-TT
1 TCTCGTTGCGATTTTCATTT
* *
7235621 TCGCATTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCA-TTT
**
7235642 TCTCGTTGCAGATAGTCATTT
1 TCTCGTTGC-GATTTTCATTT
*
7235663 TCACGTTGCGATTTTCATTT
1 TCTCGTTGCGATTTTCATTT
7235683 ATCTCGTTGCGA
1 -TCTCGTTGCGA
7235695 CTCTTCTGCA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
19 15 0.25
20 9 0.15
21 30 0.50
22 6 0.10
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.47
Consensus pattern (20 bp):
TCTCGTTGCGATTTTCATTT
Found at i:7235816 original size:33 final size:33
Alignment explanation
Indices: 7235774--7235844 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
7235764 AATACTAACT
7235774 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
7235807 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
7235840 TGAAA
1 TGAAA
7235845 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:7236249 original size:20 final size:20
Alignment explanation
Indices: 7236224--7236375 Score: 189
Period size: 20 Copynumber: 7.6 Consensus size: 20
7236214 CTTTAAAAAT
7236224 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7236244 CGCGTTGCGATATACAGATA
1 CGCGTTGCGATTTACGGATA
*
7236264 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
7236284 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7236304 CACGTTGCGAGTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7236324 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
7236344 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
7236364 CGCGTTGCGATT
1 CGCGTTGCGATT
7236376 CTGGAAAATC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
20 113 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7236918 original size:49 final size:48
Alignment explanation
Indices: 7236849--7236972 Score: 207
Period size: 49 Copynumber: 2.6 Consensus size: 48
7236839 ATTACTAATC
7236849 ATTACTAAATCATTAGTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACT-AATCATTA-TATCAAATCATTAAATATTAATAATAATTTCATT
7236899 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTA-TATCAAATCATTAAATATTAATAATAATTTCATT
7236948 ATTACTAATCATTAT-T-AAATCATTA
1 ATTACTAATCATTATATCAAATCATTA
7236973 CTATCAAATC
Statistics
Matches: 73, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
46 9 0.12
47 1 0.01
48 1 0.01
49 56 0.77
50 6 0.08
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (48 bp):
ATTACTAATCATTATATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:7236929 original size:109 final size:106
Alignment explanation
Indices: 7236814--7237101 Score: 355
Period size: 109 Copynumber: 2.7 Consensus size: 106
7236804 AATCATTAGT
* * *
7236814 ATTAAATAATGATTATAATTTAATGATTACTAATCATTACTAAATCATTAGTATCAAATCATTAA
1 ATTAAATAATAATTATAATTTAATAATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
7236879 ATATTAATAATAATTTCATTATTACTAATCATTACTATCAAATC
66 ATATTAATAATAATTTCATTATTACTAATCATTA-T-T-AAATC
* * * * *
7236923 ATTAAATATTAATAATAATTTCATTATTACTAATCATTATTAAATCATTACTATCAAATCATTAA
1 ATTAAATAATAATTATAATTTAATAATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
7236988 ATATTAATAATAATTTCATTATTACTAATCATTATTAAATC
66 ATATTAATAATAATTTCATTATTACTAATCATTATTAAATC
* * * * * * *
7237029 ATTACTATCAAATCATTA-AATATTAATAATAATTTCATTATTACT-AATCATTATTATCAAATC
1 ATTA-AAT--AATAATTATAAT-TTAATAATTA-CTAATCATTACTAAATCATTACTATCAAATC
7237092 ATTAAATATT
61 ATTAAATATT
7237102 GGTTGACTCA
Statistics
Matches: 155, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
106 9 0.06
107 3 0.02
108 4 0.03
109 131 0.85
110 8 0.05
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (106 bp):
ATTAAATAATAATTATAATTTAATAATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
ATATTAATAATAATTTCATTATTACTAATCATTATTAAATC
Found at i:7236933 original size:21 final size:20
Alignment explanation
Indices: 7236909--7237053 Score: 81
Period size: 21 Copynumber: 7.2 Consensus size: 20
7236899 ATTACTAATC
7236909 ATTACTATCAAATCATTAAAT
1 ATTACTATC-AATCATTAAAT
* * *
7236930 ATTA--AT-AATAATTTCATT
1 ATTACTATCAATCA-TTAAAT
*
7236948 ATTACTAATC-ATTATTAAAT
1 ATTACT-ATCAATCATTAAAT
7236968 CATTACTATCAAATCATTAAAT
1 -ATTACTATC-AATCATTAAAT
* * *
7236990 ATTA--AT-AATAATTTCATT
1 ATTACTATCAATCA-TTAAAT
*
7237008 ATTACTAATC-ATTATTAAAT
1 ATTACT-ATCAATCATTAAAT
7237028 CATTACTATCAAATCATTAAAT
1 -ATTACTATC-AATCATTAAAT
7237050 ATTA
1 ATTA
7237054 ATAATAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
17 8 0.09
18 16 0.17
19 4 0.04
20 14 0.15
21 34 0.36
22 18 0.19
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.43
Consensus pattern (20 bp):
ATTACTATCAATCATTAAAT
Found at i:7236953 original size:39 final size:39
Alignment explanation
Indices: 7236904--7237074 Score: 109
Period size: 39 Copynumber: 4.3 Consensus size: 39
7236894 TCATTATTAC
*
7236904 TAATCATTACTATCAAATCATTAAATATTAATAATAATT
1 TAATTATTACTATCAAATCATTAAATATTAATAATAATT
* * *
7236943 TCATTATTACTAATC--ATTATTAAATCATTACT-ATCAAATCAT
1 TAATTATTACT-ATCAAATCATTAAAT-ATTAATAAT--AAT--T
* * * * * * *
7236985 TAAATATTAATAAT-AATTTCATT-ATTACTAATCATTATT
1 TAATTATTACT-ATCAA-ATCATTAAATATTAATAATAATT
* *
7237024 AAATCATTACTATCAAATCATTAAATATTAATAATAATT
1 TAATTATTACTATCAAATCATTAAATATTAATAATAATT
*
7237063 TCATTATTACTA
1 TAATTATTACTA
7237075 ATCATTATTA
Statistics
Matches: 95, Mismatches: 25, Indels: 24
0.66 0.17 0.17
Matches are distributed among these distances:
38 18 0.19
39 45 0.47
40 6 0.06
41 2 0.02
42 16 0.17
43 4 0.04
44 4 0.04
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (39 bp):
TAATTATTACTATCAAATCATTAAATATTAATAATAATT
Found at i:7236969 original size:60 final size:60
Alignment explanation
Indices: 7236894--7237084 Score: 364
Period size: 60 Copynumber: 3.1 Consensus size: 60
7236884 AATAATAATT
7236894 TCATTATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
1 TCATTATTA--AATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
7236956 TCATTATTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
1 TCATTATTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
7237016 TCATTATTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
1 TCATTATTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
7237076 TCATTATTA
1 TCATTATTA
7237085 TCAAATCATT
Statistics
Matches: 129, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
60 120 0.93
62 9 0.07
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (60 bp):
TCATTATTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
Found at i:7240250 original size:20 final size:22
Alignment explanation
Indices: 7240222--7240265 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
7240212 ATATAAATTA
*
7240222 AACAATATAT-TTTTTAAA-AC
1 AACAATATATATTATTAAACAC
*
7240242 AACACTATATATTATTAAACAC
1 AACAATATATATTATTAAACAC
7240264 AA
1 AA
7240266 TCTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
AACAATATATATTATTAAACAC
Found at i:7241927 original size:21 final size:21
Alignment explanation
Indices: 7241874--7241913 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7241864 TGCATGTATC
7241874 ATATAACTTAAACTAACAATA
1 ATATAACTTAAACTAACAATA
7241895 ATATAACTTAAACTAACAA
1 ATATAACTTAAACTAACAA
7241914 ACTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
ATATAACTTAAACTAACAATA
Found at i:7241945 original size:39 final size:39
Alignment explanation
Indices: 7241901--7241985 Score: 161
Period size: 39 Copynumber: 2.2 Consensus size: 39
7241891 AATAATATAA
7241901 CTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTAC
1 CTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTAC
*
7241940 CTTAAACTAACTAACTAATTAACTAAAATTTTGTTTTAC
1 CTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTAC
7241979 CTTAAAC
1 CTTAAAC
7241986 CATAAACTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.39
Consensus pattern (39 bp):
CTTAAACTAACAAACTAATTAACTAAAATTTTGTTTTAC
Found at i:7242009 original size:39 final size:37
Alignment explanation
Indices: 7241912--7242009 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 37
7241902 TTAAACTAAC
*
7241912 AAACTAATTAACTAAAATTTTGTTTTACCTTAAACTA
1 AAACTAATTAACTAAAATTTTGTTTTACCTTAAACCA
7241949 ACTAACTAATTAACTAAAATTTTGTTTTACCTTAAACCA
1 A--AACTAATTAACTAAAATTTTGTTTTACCTTAAACCA
**
7241988 TAAACTAACAAACTAATAATTT
1 -AAACTAATTAACTAA-AATTT
7242010 AAAATAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
37 1 0.02
38 12 0.22
39 40 0.74
40 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (37 bp):
AAACTAATTAACTAAAATTTTGTTTTACCTTAAACCA
Found at i:7242262 original size:23 final size:23
Alignment explanation
Indices: 7242232--7242287 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
7242222 TGAACGACTA
*
7242232 CAATAATGCAACAATAAGGGTTG
1 CAATAATGCAACAATAAGGGATG
* * *
7242255 TAATAATGCATCAATAAGTGATG
1 CAATAATGCAACAATAAGGGATG
7242278 CAATAATGCA
1 CAATAATGCA
7242288 GTTGAATTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (23 bp):
CAATAATGCAACAATAAGGGATG
Found at i:7242493 original size:29 final size:29
Alignment explanation
Indices: 7242409--7242493 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
7242399 CAAAGCATGC
* * *
7242409 ATGTCGCTCGGATGCCCTGGCAACCTACC
1 ATGTCGCTGGGATGCCCTGGCGACCTACA
* *
7242438 ATGTCGCTGGGATGCCATGGCGTCCTACA
1 ATGTCGCTGGGATGCCCTGGCGACCTACA
* *
7242467 ATGTCGTTGGGATGCCCTGGTGACCTA
1 ATGTCGCTGGGATGCCCTGGCGACCTA
7242494 TCCATTCACA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGTCGCTGGGATGCCCTGGCGACCTACA
Found at i:7245114 original size:12 final size:12
Alignment explanation
Indices: 7245097--7245163 Score: 57
Period size: 12 Copynumber: 5.6 Consensus size: 12
7245087 TGTTCGTTTA
7245097 ATGTTCACAAAC
1 ATGTTCACAAAC
**
7245109 ATGTTCATTTAA-
1 ATGTTCA-CAAAC
7245121 ATGTTCACAAAC
1 ATGTTCACAAAC
**
7245133 ATGTTCATTTAA-
1 ATGTTCA-CAAAC
*
7245145 ATGTTCGCAAAC
1 ATGTTCACAAAC
7245157 ATGTTCA
1 ATGTTCA
7245164 TTTAATGTTC
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
11 4 0.10
12 33 0.80
13 4 0.10
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (12 bp):
ATGTTCACAAAC
Found at i:7245128 original size:24 final size:23
Alignment explanation
Indices: 7245087--7245174 Score: 140
Period size: 24 Copynumber: 3.7 Consensus size: 23
7245077 TTTGCGAATG
*
7245087 TGTTCGTTTAATGTTCACAAACA
1 TGTTCATTTAATGTTCACAAACA
7245110 TGTTCATTTAAATGTTCACAAACA
1 TGTTCATTT-AATGTTCACAAACA
*
7245134 TGTTCATTTAAATGTTCGCAAACA
1 TGTTCATTT-AATGTTCACAAACA
7245158 TGTTCATTTAATGTTCA
1 TGTTCATTTAATGTTCA
7245175 TGAATAAGTT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 15 0.25
24 46 0.75
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (23 bp):
TGTTCATTTAATGTTCACAAACA
Found at i:7245843 original size:16 final size:17
Alignment explanation
Indices: 7245822--7245854 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7245812 TGTGTGCTTA
*
7245822 AATAAAA-CCGTAGAAT
1 AATAAAATCCATAGAAT
7245838 AATAAAATCCATAGAAT
1 AATAAAATCCATAGAAT
7245855 GATATGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (17 bp):
AATAAAATCCATAGAAT
Found at i:7253002 original size:45 final size:44
Alignment explanation
Indices: 7252948--7253073 Score: 180
Period size: 45 Copynumber: 2.8 Consensus size: 44
7252938 AATAAATGCT
*
7252948 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTCGAACAAGTA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTT-GAACAAGCA
* *
7252993 TGCGAACTAGATATCATGAGGTTAGGTTTATTTTTGAATAAGCA
1 TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTGAACAAGCA
* * *
7253037 TGCGAATTAGATATCATGCGGTCAGGATTTCTTTTTG
1 TGCGAACTAGATATCATGCGGTTAGG-TTTATTTTTG
7253074 TGGATAACAA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 30 0.41
45 43 0.59
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (44 bp):
TGCGAACTAGATATCATGCGGTTAGGTTTATTTTTGAACAAGCA
Found at i:7262725 original size:17 final size:17
Alignment explanation
Indices: 7262700--7262772 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 17
7262690 AAGAAGAAAT
*
7262700 AAAAGAGAAAAAATGAG
1 AAAAAAGAAAAAATGAG
7262717 AAAAAAG-AAAAATGATGG
1 AAAAAAGAAAAAATGA--G
* *
7262735 AAAAAACAAAAAGA-AAG
1 AAAAAAGAAAAA-ATGAG
7262752 AAAAAAAGAAAAAATG-G
1 -AAAAAAGAAAAAATGAG
7262769 AAAA
1 AAAA
7262773 GGGAAGAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
16 12 0.27
17 9 0.20
18 18 0.40
19 5 0.11
20 1 0.02
ACGTcount: A:0.75, C:0.01, G:0.18, T:0.05
Consensus pattern (17 bp):
AAAAAAGAAAAAATGAG
Found at i:7262728 original size:18 final size:19
Alignment explanation
Indices: 7262700--7262764 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
7262690 AAGAAGAAAT
7262700 AAAAGAGAAAA-AATGAGAA
1 AAAAGA-AAAAGAATGAGAA
7262719 AAAAGAAAAATG-ATG-GAA
1 AAAAGAAAAA-GAATGAGAA
* *
7262737 AAAACAAAAAGAAAGA-AA
1 AAAAGAAAAAGAATGAGAA
7262755 AAAAGAAAAA
1 AAAAGAAAAA
7262765 ATGGAAAAGG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 1 0.03
18 29 0.74
19 9 0.23
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.05
Consensus pattern (19 bp):
AAAAGAAAAAGAATGAGAA
Found at i:7264202 original size:51 final size:51
Alignment explanation
Indices: 7264141--7264599 Score: 564
Period size: 51 Copynumber: 8.8 Consensus size: 51
7264131 AAATTCGTTT
7264141 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
7264192 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
7264243 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
7264294 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
* *
7264345 GTTGAAGATTGAGTCCTATACACTCTGAAGGAATAGGGAGCGGACAAGTTC
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
* * *
7264396 GTTGAAGATTGTTTTGAGTCC--TACTCTCTGAAGGAATAGGGAGCGGACACGTTT
1 GTTGAAGA-----TTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
* * * * * ** *
7264450 ATTGGAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTT
1 GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
* * * * * * *
7264501 GTTGAAGATTATTCGAG-CCTTATACTCCCTGAACGAATAGAGAACAGACACGTTT
1 GTTGAAG---ATT-GAGTCC-TATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
* * *
7264556 GTTGAAGATTGTTTGAGTCTTATATTCCCTGAATGAATAGGGAG
1 GTTGAAGA----TTGAGTCCTATACTCTCTGAATGAATAGGGAG
7264600 AAGACACGTT
Statistics
Matches: 366, Mismatches: 25, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
49 6 0.02
51 247 0.67
52 1 0.00
54 39 0.11
55 62 0.17
56 11 0.03
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (51 bp):
GTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTC
Found at i:7264555 original size:55 final size:55
Alignment explanation
Indices: 7264136--7264653 Score: 255
Period size: 51 Copynumber: 9.9 Consensus size: 55
7264126 GAAGCAAATT
* * * * *
7264136 CGTTTGTTGAAG---ATT-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * *
7264187 AGTTCGTTGAAG---ATT-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * *
7264238 AGTTCGTTGAAG---ATT-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * *
7264289 AGTTCGTTGAAG---ATT-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * * *
7264340 AGTTCGTTGAAG---ATT-GAGTCCTATACACTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * * * *
7264391 AGTTCGTTGAAGATTGTTTTGAGTC--CTACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATT-ATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * * * * *
7264445 CGTTTATTG--GA-GA-TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACC
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* *
7264496 CGTTTGTTGAAGATTATTCGAGCCTTATACTCCCTGAACGAATAGAGAACAGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
* * * *
7264551 CGTTTGTTGAAGATTGTTTGAGTCTTATATTCCCTGAATGAATAGGGAGA-AGACA
1 CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGA-ACAGACA
** ** * *
7264606 CGTTTG-CCAAGGATTGCTCGAGTCTTATACTTCCTGAAGGAATAGGGA
1 CGTTTGTTGAA-GATTATTCGAGTCTTATACTCCCTGAACGAATAGGGA
7264654 GCAGGCTCGT
Statistics
Matches: 417, Mismatches: 37, Indels: 22
0.88 0.08 0.05
Matches are distributed among these distances:
49 6 0.01
51 247 0.59
52 2 0.00
53 2 0.00
54 36 0.09
55 118 0.28
56 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (55 bp):
CGTTTGTTGAAGATTATTCGAGTCTTATACTCCCTGAACGAATAGGGAACAGACA
Found at i:7264671 original size:110 final size:111
Alignment explanation
Indices: 7264458--7264689 Score: 245
Period size: 110 Copynumber: 2.1 Consensus size: 111
7264448 TTATTGGAGA
* ** * ** *
7264458 TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTGTTGAAGATTATTCGAGCCTTA
1 TCGAGTCTTATACTCCCTGAAGGAATAGGGAGAAGACACGTTTGTCCAAGATTACTCGAGCCTTA
*
7264523 TACTCCCTGAACGAATAGAGAACAGACACGTTTGTTGAAGATTGTT
66 TACTCCCTGAACGAATAGAGAACAGACACGTATGTTGAAGATTGTT
* * * *
7264569 T-GAGTCTTATATTCCCTGAATGAATAGGGAGAAGACACGTTTG-CCAAGGATTGCTCGAGTCTT
1 TCGAGTCTTATACTCCCTGAAGGAATAGGGAGAAGACACGTTTGTCCAA-GATTACTCGAGCCTT
* * * * * * *
7264632 ATACTTCCTGAAGGAATAGGGAGCAGGCTCGTCAT-TTGAAGATTTTT
65 ATACTCCCTGAACGAATAGAGAACAGACACGT-ATGTTGAAGATTGTT
*
7264679 TCAAGTCTTAT
1 TCGAGTCTTAT
7264690 TTATCCTGAC
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
109 2 0.02
110 86 0.88
111 10 0.10
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (111 bp):
TCGAGTCTTATACTCCCTGAAGGAATAGGGAGAAGACACGTTTGTCCAAGATTACTCGAGCCTTA
TACTCCCTGAACGAATAGAGAACAGACACGTATGTTGAAGATTGTT
Found at i:7267447 original size:18 final size:18
Alignment explanation
Indices: 7267380--7267454 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 18
7267370 GATGAATTCT
*
7267380 AAATG-TTTACAATTATC
1 AAATGTTTTACAGTTATC
* * *
7267397 AGATATTATACAGTTATC
1 AAATGTTTTACAGTTATC
*
7267415 ATACT-TTTT--AGTTATC
1 A-AATGTTTTACAGTTATC
7267431 AAATGTTTTACAGTTATC
1 AAATGTTTTACAGTTATC
*
7267449 AGATGT
1 AAATGT
7267455 AGATTAATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.05
16 12 0.27
17 3 0.07
18 26 0.59
19 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (18 bp):
AAATGTTTTACAGTTATC
Found at i:7271554 original size:29 final size:31
Alignment explanation
Indices: 7271487--7271559 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
7271477 TATGAAAATA
*
7271487 TAAATAAATTTTATTATATATTGTATTAGTT
1 TAAAAAAATTTTATTATATATTGTATTAGTT
*
7271518 TATAAAAACTTTTATTAT-TATT-T-TT-GTAT
1 TA-AAAAAATTTTATTATATATTGTATTAGT-T
7271547 TAAAAAAATTTTA
1 TAAAAAAATTTTA
7271560 AAATTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 12 0.32
29 5 0.14
30 1 0.03
31 6 0.16
32 13 0.35
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (31 bp):
TAAAAAAATTTTATTATATATTGTATTAGTT
Found at i:7272610 original size:3 final size:3
Alignment explanation
Indices: 7272588--7272621 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7272578 AGCAATCTAT
* *
7272588 GCA GCA ACA GCA GCA ACA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
7272622 AACCAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.32, G:0.29, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:7272621 original size:9 final size:9
Alignment explanation
Indices: 7272588--7272620 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7272578 AGCAATCTAT
7272588 GCAGCAACA
1 GCAGCAACA
7272597 GCAGCAACA
1 GCAGCAACA
*
7272606 GCAGCAGCA
1 GCAGCAACA
7272615 GCAGCA
1 GCAGCA
7272621 GAACCAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.33, G:0.27, T:0.00
Consensus pattern (9 bp):
GCAGCAACA
Found at i:7282594 original size:18 final size:19
Alignment explanation
Indices: 7282573--7282610 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7282563 TAATAGTAAG
7282573 TTATCATAA-AATATTTTT
1 TTATCATAATAATATTTTT
* *
7282591 TTATTATAATTATATTTTT
1 TTATCATAATAATATTTTT
7282610 T
1 T
7282611 ATTTGTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATCATAATAATATTTTT
Found at i:7283174 original size:17 final size:16
Alignment explanation
Indices: 7283131--7283176 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
7283121 CAATCTAAAC
7283131 TATAATAAAAAATATA
1 TATAATAAAAAATATA
*
7283147 TATAA-AGAAAATATAA
1 TATAATAAAAAATAT-A
7283163 TTATAATAAAAAAT
1 -TATAATAAAAAAT
7283177 TATTTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 8 0.32
16 6 0.24
17 5 0.20
18 6 0.24
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
TATAATAAAAAATATA
Found at i:7284690 original size:21 final size:24
Alignment explanation
Indices: 7284643--7284688 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
7284633 ATAAGGAACG
7284643 TGTCACAAGAGCAGAGAAAAAATA
1 TGTCACAAGAGCAGAGAAAAAATA
*
7284667 TGTCACAAGAGCA-AAAAAAAAT
1 TGTCACAAGAGCAGAGAAAAAAT
7284689 GTACTGCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (24 bp):
TGTCACAAGAGCAGAGAAAAAATA
Found at i:7285198 original size:3 final size:3
Alignment explanation
Indices: 7285190--7285240 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
7285180 ATTTTTAAAC
** ** *
7285190 TTA TTA TTA TTA AAA TTA TTA AAA TTA TTA TTA TTA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7285238 TTA
1 TTA
7285241 AATAATAATT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:7285202 original size:15 final size:14
Alignment explanation
Indices: 7285178--7285243 Score: 77
Period size: 15 Copynumber: 4.9 Consensus size: 14
7285168 ATTTTTCATT
*
7285178 TTATTTTTAAACTTA
1 TTATTATTAAA-TTA
7285193 TTATTATTAAA--A
1 TTATTATTAAATTA
7285205 TTATTA--AAATTA
1 TTATTATTAAATTA
7285217 TTATTATTAATATTA
1 TTATTATTAA-ATTA
7285232 TTATTATTAAAT
1 TTATTATTAAAT
7285244 AATAATTACA
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
10 3 0.07
12 14 0.31
14 4 0.09
15 24 0.53
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATTATTAAATTA
Found at i:7285217 original size:24 final size:24
Alignment explanation
Indices: 7285184--7285234 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
7285174 CATTTTATTT
*
7285184 TTAAACTTATTATTATTAAAATTA
1 TTAAAATTATTATTATTAAAATTA
*
7285208 TTAAAATTATTATTATTAATATTA
1 TTAAAATTATTATTATTAAAATTA
7285232 TTA
1 TTA
7285235 TTATTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TTAAAATTATTATTATTAAAATTA
Found at i:7286489 original size:25 final size:25
Alignment explanation
Indices: 7286443--7286492 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7286433 AAAAGCATGT
*
7286443 TTTTATTTATTTTTTGGAATTTATA
1 TTTTATTTATTTTTAGGAATTTATA
* **
7286468 TTTTATTTCTTTTTAGTCATTTATA
1 TTTTATTTATTTTTAGGAATTTATA
7286493 CATGTATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.68
Consensus pattern (25 bp):
TTTTATTTATTTTTAGGAATTTATA
Found at i:7288283 original size:46 final size:46
Alignment explanation
Indices: 7288210--7288297 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
7288200 TGATTTCATT
*
7288210 TTTTTCTAAACAAAGCATGTAACTAGAAATCATGCA-GTTAGGTTAA
1 TTTTTCTAAACAAAGCATGGAACTAGAAATCATG-AGGTTAGGTTAA
* *
7288256 TTTTTCTAAATAAAGCATGGAATTAGAAATCATGAGGTTAGG
1 TTTTTCTAAACAAAGCATGGAACTAGAAATCATGAGGTTAGG
7288298 ATTTATACCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 1 0.03
46 37 0.97
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (46 bp):
TTTTTCTAAACAAAGCATGGAACTAGAAATCATGAGGTTAGGTTAA
Found at i:7293283 original size:32 final size:33
Alignment explanation
Indices: 7293221--7293283 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
7293211 TCTGGAAACA
*
7293221 AGAAGTATCTCTACGAAGATGAGCATAACAACG
1 AGAAGTATCTCTACGAAGATAAGCATAACAACG
*
7293254 AGAAGTATCTCTAC-CAGATAAGCATAACAA
1 AGAAGTATCTCTACGAAGATAAGCATAACAA
7293284 TCTTTTCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (33 bp):
AGAAGTATCTCTACGAAGATAAGCATAACAACG
Found at i:7296179 original size:75 final size:74
Alignment explanation
Indices: 7296071--7296304 Score: 187
Period size: 75 Copynumber: 3.2 Consensus size: 74
7296061 ATGTCGGGGT
* * * * * *
7296071 ATGCTGAAAGCCCATTCCAATCA-TAATCAGGAATATTGATGCGTTTTGAATGTTCACGTCA-A-
1 ATGCTGAAAGCCCATTTCAATCAGAAAT-TGGAATATTGACGCATTTTGAACG-TC-CGT-ATAG
7296133 CAAATGCTGAGGC
62 CAAATGCTGAGGC
* * *
7296146 ATGCTGAAAGCCCATTTTAATCAGAAATTGGAATATTGGCGCATTTTGAACGTCTGTATTAGCAA
1 ATGCTGAAAGCCCATTTCAATCAGAAATTGGAATATTGACGCATTTTGAACGTCCGTA-TAGCAA
* *
7296211 ATGTTGGGGC
65 ATGCTGAGGC
* * * * * *
7296221 ATGCTGAAAGCACATTTCAATTAGAAATTGGAATA---A--CATTTTGAACATTCATATCAGTAA
1 ATGCTGAAAGCCCATTTCAATCAGAAATTGGAATATTGACGCATTTTGAACGTCCGTAT-AGCAA
*
7296281 ATGCTGGGGC
65 ATGCTGAGGC
*
7296291 ATGCTGAAGGCCCA
1 ATGCTGAAAGCCCA
7296305 CATCATTATG
Statistics
Matches: 131, Mismatches: 23, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
69 1 0.01
70 38 0.29
72 1 0.01
73 2 0.02
74 3 0.02
75 83 0.63
76 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (74 bp):
ATGCTGAAAGCCCATTTCAATCAGAAATTGGAATATTGACGCATTTTGAACGTCCGTATAGCAAA
TGCTGAGGC
Found at i:7298226 original size:31 final size:29
Alignment explanation
Indices: 7298188--7298249 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
7298178 TACAGTGCAG
7298188 GACGTTTTCAAAAAGCCTTCGGGAGCTTTTT
1 GACGTTTT--AAAAGCCTTCGGGAGCTTTTT
*
7298219 GACGTTTTTAAAGCCTTCGGGAGCTTTTT
1 GACGTTTTAAAAGCCTTCGGGAGCTTTTT
7298248 GA
1 GA
7298250 TCTTAAAGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 22 0.73
31 8 0.27
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (29 bp):
GACGTTTTAAAAGCCTTCGGGAGCTTTTT
Found at i:7298350 original size:73 final size:73
Alignment explanation
Indices: 7298228--7298666 Score: 682
Period size: 73 Copynumber: 6.0 Consensus size: 73
7298218 TGACGTTTTT
*
7298228 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGGCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
7298293 GTTTTCAA
66 GTTTTCAA
* * *
7298301 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTTAGGGTCATCTATAAGACCTAAAGTGCATGAT
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
7298366 GTTTTCAA
66 GTTTTCAA
* * * *
7298374 AAAACCTTCGGGAGCTTTTTGATATTAAAGCCTCAGGGTAATCTGTAAGATCTACAGTGCATGAT
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
7298439 GTTTTCAA
66 GTTTTCAA
* *
7298447 AAAGCCTTCGGGAGCTTTTTGATCTTAAAACCTCAGGGTCAACTGTAAGACCTACAGTGCATGAT
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
7298512 GTTTTCAA
66 GTTTTCAA
* * *
7298520 AAAACCTTCGAGAGCTTTTTGATATTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
7298585 GTTTTCAA
66 GTTTTCAA
* * ** * * *
7298593 AAAGCCTTCGGGAGCTTTTTGATTTTAAAACCTCAGGG-CAATCCATAAGACCTCCAGTGTAGGA
1 AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTC-ATCTGTAAGACCTACAGTGCATGA
7298657 TGTTTTCAA
65 TGTTTTCAA
7298666 A
1 A
7298667 TGAGATTTTA
Statistics
Matches: 334, Mismatches: 31, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
72 1 0.00
73 333 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (73 bp):
AAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCAGGGTCATCTGTAAGACCTACAGTGCATGAT
GTTTTCAA
Found at i:7298856 original size:131 final size:129
Alignment explanation
Indices: 7298622--7298907 Score: 394
Period size: 131 Copynumber: 2.2 Consensus size: 129
7298612 TGATTTTAAA
* *
7298622 ACCTCAGGGCAATCCATAAGACCTCCAGTGTAGGATGTTTTCAAATGAGATTTTAAGAAACTGAT
1 ACCTCAGGGC-ATCCATAAGACCTCCAATGCAGGATGTTTTCAAATGAGATTTTAAGAAACTGAT
* * *
7298687 TTTCAAAGGTTTCTTAATCTTAAATATTTCGAGTCATCTATAAGACCTACAGTGCAAGATGATAA
65 TTTCAAAGGTTTCTTAATCTTAAATACTCCGAGTCATCTATAAG-CCTACAGAGCAAGATGATAA
7298752 G
129 G
7298753 ACCTCAGGGTCATCCATAAGACCTCCAATGCAGGATGTTTTCAAATGAGATTTTAAGAAACTGAT
1 ACCTCAGGG-CATCCATAAGACCTCCAATGCAGGATGTTTTCAAATGAGATTTTAAGAAACTGAT
* * * * *
7298818 TTTCAAAGGTTTCTTGATCTTAAATCCTCCTGA-TCATCTGTAAGCCTTCCGAGCAAGATGATAA
65 TTTCAAAGGTTTCTTAATCTTAAATACTCC-GAGTCATCTATAAGCCTACAGAGCAAGATGATAA
7298882 G
129 G
* * * *
7298883 TCATCCGGGCCATTCATAAGACCTC
1 ACCTCAGGG-CATCCATAAGACCTC
7298908 TGGGCAGAAT
Statistics
Matches: 138, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
130 38 0.28
131 97 0.70
132 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30
Consensus pattern (129 bp):
ACCTCAGGGCATCCATAAGACCTCCAATGCAGGATGTTTTCAAATGAGATTTTAAGAAACTGATT
TTCAAAGGTTTCTTAATCTTAAATACTCCGAGTCATCTATAAGCCTACAGAGCAAGATGATAAG
Found at i:7299067 original size:3 final size:3
Alignment explanation
Indices: 7299059--7299104 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
7299049 ATTTTTAAAC
* *
7299059 TTA TTA TTA TTA TTA TAAA TTA TTA TTA ATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7299105 AATAATAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:7300355 original size:25 final size:25
Alignment explanation
Indices: 7300327--7300376 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7300317 AAAAGCATGT
*
7300327 TTTTATTTATTTTTTGGCATTTATA
1 TTTTATTTATTTTTAGGCATTTATA
* *
7300352 TTTTATTTCTTTTTAGTCATTTATA
1 TTTTATTTATTTTTAGGCATTTATA
7300377 CATGTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.68
Consensus pattern (25 bp):
TTTTATTTATTTTTAGGCATTTATA
Done.