Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 49
Found at i:7606367 original size:64 final size:65
Alignment explanation
Indices: 7606248--7606399 Score: 173
Period size: 64 Copynumber: 2.4 Consensus size: 65
7606238 ACTAGGGGTG
* * *
7606248 CATCGATGCATAAAATACATTTGATGTTTCAAATAAGCCTGGAGTGCATCCATGCATGATTTGTA
1 CATCGATGCATAAAATGCATTCGATGTTTCAAATAAGCCTGGAGTGCATCCATGCATGACTTGTA
* * ** * *
7606313 CATCGATGCATAAAATGTATTCGATG-TTCAAATTA-TTTAGGAGTGCATCGATGCATGCCTTGT
1 CATCGATGCATAAAATGCATTCGATGTTTCAAATAAGCCT-GGAGTGCATCCATGCATGACTTGT
*
7606376 G
65 A
* *
7606377 CATCGATACACAAAATGCATTCG
1 CATCGATGCATAAAATGCATTCG
7606400 GAATTCAATT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
63 1 0.01
64 49 0.67
65 23 0.32
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Consensus pattern (65 bp):
CATCGATGCATAAAATGCATTCGATGTTTCAAATAAGCCTGGAGTGCATCCATGCATGACTTGTA
Found at i:7606407 original size:64 final size:65
Alignment explanation
Indices: 7606288--7606432 Score: 161
Period size: 64 Copynumber: 2.3 Consensus size: 65
7606278 AAATAAGCCT
* * * * * * *
7606288 GGAGTGCATCCATGCATGATTTGTACATCGATGCATAAAATGTATTCGATGTTCAAATTATT-TA
1 GGAGTGCATCGATGCATGACTTGTACATCGATACACAAAATGCATTCGATATTCAAATTATTCAA
* * *
7606352 GGAGTGCATCGATGCATGCCTTGTGCATCGATACACAAAATGCATTCGGA-ATTCAATTTATTCA
1 GGAGTGCATCGATGCATGACTTGTACATCGATACACAAAATGCATTC-GATATTCAAATTATTCA
7606416 A
65 A
*
7606417 GG-GTGCATAGATGCAT
1 GGAGTGCATCGATGCAT
7606433 TATATAGTGC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
64 63 0.93
65 5 0.07
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (65 bp):
GGAGTGCATCGATGCATGACTTGTACATCGATACACAAAATGCATTCGATATTCAAATTATTCAA
Found at i:7610632 original size:29 final size:27
Alignment explanation
Indices: 7610567--7610620 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
7610557 AAATGAATCT
7610567 TAAAAAATAAATGTAATAAAACACATA
1 TAAAAAATAAATGTAATAAAACACATA
*
7610594 TAAAAAATAAACTG-AATCAAACACATA
1 TAAAAAATAAA-TGTAATAAAACACATA
7610621 CATAATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.65, C:0.11, G:0.04, T:0.20
Consensus pattern (27 bp):
TAAAAAATAAATGTAATAAAACACATA
Found at i:7612625 original size:54 final size:54
Alignment explanation
Indices: 7612537--7612792 Score: 302
Period size: 54 Copynumber: 4.7 Consensus size: 54
7612527 CATAATACGG
* * *
7612537 CCGTATTGGCACTAAGTGTACAACCCACAGAATTCATAATATGTTTATGAATGA
1 CCGTATCGACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAATGA
* * *
7612591 CCGTAACGACACTAAGTGTGCAACCCAC-GAAATTCATAATATTTTTATGAACGA
1 CCGTATCGACACTAAGTGTGCAACCCACAG-AATTCATAATATGTTTATGAATGA
* * *
7612645 CCGTATCAACACTAAGTGTGCAATCCACAAAATTCATAATATGTTTATGAATGA
1 CCGTATCGACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAATGA
* * * **
7612699 CCATATCGACACTAAGTGTGCAACCCACATAATTCATAATAAGTTTATGAACAA
1 CCGTATCGACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAATGA
* * * *
7612753 TCGTATCGGCAC-AACGTGTGCACCCCAAAGAAATT-ATAAT
1 CCGTATCGACACTAA-GTGTGCAACCCACAG-AATTCATAAT
7612793 GTTATGAAAA
Statistics
Matches: 173, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.02
54 166 0.96
55 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (54 bp):
CCGTATCGACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAATGA
Found at i:7612772 original size:108 final size:108
Alignment explanation
Indices: 7612537--7612792 Score: 338
Period size: 108 Copynumber: 2.4 Consensus size: 108
7612527 CATAATACGG
* * * *
7612537 CCGTATTGGCACTAAGTGTACAACCCACAGAATTCATAATATGTTTATGAATGACCGTAACGACA
1 CCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAATGACCATAACGACA
** *
7612602 CTAAGTGTGCAACCCACGAAATTCATAATATTTTTATGAACGA
66 CTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACAA
** * *
7612645 CCGTATCAACACTAAGTGTGCAATCCACAAAATTCATAATATGTTTATGAATGACCATATCGACA
1 CCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAATGACCATAACGACA
7612710 CTAAGTGTGCAACCCAC-ATAATTCATAATAAGTTTATGAACAA
66 CTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACAA
* * *
7612753 TCGTATCGGCAC-AACGTGTGCACCCCAAAGAAATT-ATAAT
1 CCGTATCGGCACTAA-GTGTGCAACCCACA-AAATTCATAAT
7612793 GTTATGAAAA
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.02
108 120 0.94
109 5 0.04
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (108 bp):
CCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAATGACCATAACGACA
CTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACAA
Found at i:7614913 original size:62 final size:62
Alignment explanation
Indices: 7614836--7614957 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
7614826 CTTATCAAGT
* *
7614836 ATGATTGTCCTCTCCTAAAGAAGAATGGATCAGTAAGAAGAAGACATTTGTGGCAGCTTGGA
1 ATGATTGTCCCCTCCTAAAGAAGAAGGGATCAGTAAGAAGAAGACATTTGTGGCAGCTTGGA
*
7614898 ATGATTGTCCCCTCCTAAAGAATAAGGGATCAGTAAGAAGAAGACATTTGTGGCAGCTTG
1 ATGATTGTCCCCTCCTAAAGAAGAAGGGATCAGTAAGAAGAAGACATTTGTGGCAGCTTG
7614958 AATTGATGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (62 bp):
ATGATTGTCCCCTCCTAAAGAAGAAGGGATCAGTAAGAAGAAGACATTTGTGGCAGCTTGGA
Found at i:7615223 original size:20 final size:21
Alignment explanation
Indices: 7615185--7615228 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7615175 CTTTTGAAAG
* *
7615185 AAAGCAAAATTAGATTTTTGA
1 AAAGCAAAATGAGAATTTTGA
7615206 AAAGCAAAATGA-AATTTTGA
1 AAAGCAAAATGAGAATTTTGA
7615226 AAA
1 AAA
7615229 TGATTTTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (21 bp):
AAAGCAAAATGAGAATTTTGA
Found at i:7623120 original size:37 final size:38
Alignment explanation
Indices: 7623066--7623185 Score: 144
Period size: 37 Copynumber: 3.3 Consensus size: 38
7623056 AGTTGGAAAA
7623066 TTCATCTTTGGTAGGTGGCCAACTTTGCACATGGGAAT
1 TTCATCTTTGGTAGGTGGCCAACTTTGCACATGGGAAT
* * * * *
7623104 TTCATC-TTGGTTGGTGGCCAAC-TT--A-GTAGAAAA
1 TTCATCTTTGGTAGGTGGCCAACTTTGCACATGGGAAT
*
7623137 TTCATCTTTGGTAGGTGGTCAACTTTGCACATGGGAAT
1 TTCATCTTTGGTAGGTGGCCAACTTTGCACATGGGAAT
7623175 TTCAT-TTTGGT
1 TTCATCTTTGGT
7623186 CCCTAAAATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
33 10 0.15
34 15 0.23
35 2 0.03
36 2 0.03
37 22 0.33
38 15 0.23
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (38 bp):
TTCATCTTTGGTAGGTGGCCAACTTTGCACATGGGAAT
Found at i:7623154 original size:34 final size:36
Alignment explanation
Indices: 7623061--7623161 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 36
7623051 TGACAAGTTG
*
7623061 GAAAATTCATCTTTGGTAGGTGGCCAACTTTGCACATG
1 GAAAATTCATCTTTGGTAGGTGGCCAAC-TT-CACATA
* * * *
7623099 GGAATTTCATC-TTGGTTGGTGGCCAACTT-A-GTA
1 GAAAATTCATCTTTGGTAGGTGGCCAACTTCACATA
*
7623132 GAAAATTCATCTTTGGTAGGTGGTCAACTT
1 GAAAATTCATCTTTGGTAGGTGGCCAACTT
7623162 TGCACATGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
33 10 0.19
34 17 0.32
36 2 0.04
37 15 0.28
38 9 0.17
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (36 bp):
GAAAATTCATCTTTGGTAGGTGGCCAACTTCACATA
Found at i:7629771 original size:15 final size:15
Alignment explanation
Indices: 7629751--7629808 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
7629741 GGACTTATTC
*
7629751 AAATATTAAAAAACT
1 AAATATTAAAAAATT
7629766 AAATATATAAAATAATT
1 AAATAT-TAAAA-AATT
*
7629783 AAA-AAT-AAAAATT
1 AAATATTAAAAAATT
7629796 AAATTATTAAAAA
1 AAA-TATTAAAAA
7629809 GTGTATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
13 7 0.20
14 3 0.09
15 9 0.26
16 10 0.29
17 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATTAAAAAATT
Found at i:7630209 original size:23 final size:23
Alignment explanation
Indices: 7630181--7630234 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
7630171 AACTTTTTAA
7630181 AATTTTATATT-TTTTA-ATAATTT
1 AATTTT-TATTGTTTTATAT-ATTT
*
7630204 AATTTTTATTGTTTTTTATATTT
1 AATTTTTATTGTTTTATATATTT
7630227 AATTTTTA
1 AATTTTTA
7630235 AAATATTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 4 0.14
23 22 0.79
24 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
AATTTTTATTGTTTTATATATTT
Found at i:7630272 original size:16 final size:17
Alignment explanation
Indices: 7630221--7630274 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
7630211 ATTGTTTTTT
*
7630221 ATATTTAAT-TTTTAAA
1 ATATTTAATAATTTAAA
*
7630237 ATATTTGAATAATTT--T
1 ATATTT-AATAATTTAAA
7630253 ATATTT-ATAATTTAAA
1 ATATTTAATAATTTAAA
7630269 ATATTT
1 ATATTT
7630275 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 7 0.23
16 18 0.58
17 3 0.10
18 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
ATATTTAATAATTTAAA
Found at i:7631116 original size:14 final size:15
Alignment explanation
Indices: 7631097--7631126 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7631087 TTATTTAAGT
7631097 TAAATA-AATTTTTA
1 TAAATATAATTTTTA
7631111 TAAATATAATTTTTA
1 TAAATATAATTTTTA
7631126 T
1 T
7631127 GTTTATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATAATTTTTA
Found at i:7632494 original size:31 final size:31
Alignment explanation
Indices: 7632458--7632517 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
7632448 AACTTAAAAG
* *
7632458 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
7632489 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
7632518 CATACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:7632875 original size:22 final size:23
Alignment explanation
Indices: 7632849--7632893 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7632839 TTATATTTTA
7632849 AAATC-TTATTTATCAAACAATG
1 AAATCATTATTTATCAAACAATG
* * *
7632871 AAATCATTTTTTATTAAGCAATG
1 AAATCATTATTTATCAAACAATG
7632894 TGGTTTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (23 bp):
AAATCATTATTTATCAAACAATG
Found at i:7633030 original size:20 final size:20
Alignment explanation
Indices: 7632982--7633043 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 20
7632972 AACTTAAATC
*
7632982 AAAATAATTAAAATAA-ATAT
1 AAAATAATT-TAATAATATAT
7633002 AAAAT--TTTAATAATATAT
1 AAAATAATTTAATAATATAT
7633020 AAAATAATTT-AT-ATGATAT
1 AAAATAATTTAATAAT-ATAT
7633039 AAAAT
1 AAAAT
7633044 TAAATATCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 5 0.14
18 13 0.35
19 11 0.30
20 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAATAATTTAATAATATAT
Found at i:7633077 original size:19 final size:20
Alignment explanation
Indices: 7633053--7633114 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 20
7633043 TTAAATATCT
7633053 ATAATA-TAATATTAAAAAA
1 ATAATATTAATATTAAAAAA
7633072 ATAATATTTAATTTATTTAAAAAA
1 ATAATA-TTAA--TA-TTAAAAAA
*
7633096 ATTAATATTAAAATTAAAA
1 A-TAATATTAATATTAAAA
7633115 TCAAATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
19 6 0.17
21 9 0.25
22 1 0.03
23 2 0.06
24 13 0.36
25 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATATTAATATTAAAAAA
Found at i:7633110 original size:12 final size:11
Alignment explanation
Indices: 7633093--7633143 Score: 57
Period size: 12 Copynumber: 4.4 Consensus size: 11
7633083 TTTATTTAAA
7633093 AAAATTAATATT
1 AAAATTAATA-T
*
7633105 AAAATTAAAAT
1 AAAATTAATAT
*
7633116 CAAATATAATAT
1 AAAAT-TAATAT
7633128 AAAATTAAATAT
1 AAAATT-AATAT
7633140 AAAA
1 AAAA
7633144 CCCCTTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 6 0.18
12 27 0.82
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:7639701 original size:19 final size:19
Alignment explanation
Indices: 7639679--7639716 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7639669 ATTTAGTTGA
* *
7639679 ATTTTATAATTATTTAATT
1 ATTTAATAATTATATAATT
7639698 ATTTAATAATTATATAATT
1 ATTTAATAATTATATAATT
7639717 TTGTTTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTAATAATTATATAATT
Found at i:7640673 original size:27 final size:27
Alignment explanation
Indices: 7640634--7640884 Score: 153
Period size: 27 Copynumber: 8.7 Consensus size: 27
7640624 ATTAATATCC
7640634 ATCACATTCATTCAAATATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
* * *
7640661 ATCATATTAATTCAACTATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
* * **
7640688 ATCACATTCATTAAAATATAACATCAACAAATATCC
1 ATCACATTCATTCAAATAT----T-----GATATTA
* *
7640724 ATCATATTAATTC-AATATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
* *
7640750 ATCACATTAATTCAACTATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
* * **
7640777 ATCACATTCATTAAATATAACTTCAACAAATATCC
1 ATCACATTCATTCAA-AT-A-TT-----GATATTA
* * *
7640812 ATCATATTAATTCAGATATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
* *
7640839 ATCACATTAATTCAACTATTGATATTA
1 ATCACATTCATTCAAATATTGATATTA
*
7640866 ATCACATTCATTAAAATAT
1 ATCACATTCATTCAAATAT
7640885 AACTTCAACA
Statistics
Matches: 169, Mismatches: 37, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
26 16 0.09
27 108 0.64
28 1 0.01
29 1 0.01
30 2 0.01
31 2 0.01
32 2 0.01
33 1 0.01
34 2 0.01
35 20 0.12
36 14 0.08
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (27 bp):
ATCACATTCATTCAAATATTGATATTA
Found at i:7640779 original size:89 final size:89
Alignment explanation
Indices: 7640627--7640912 Score: 504
Period size: 89 Copynumber: 3.2 Consensus size: 89
7640617 AAGTTGAATT
* * *
7640627 AATATCCATCACATTCATTCAAATATTGATATTAATCATATTAATTCAACTATTGATATTAATCA
1 AATATCCATCATATTAATTC-AATATTGATATTAATCACATTAATTCAACTATTGATATTAATCA
*
7640692 CATTCATTAAAATATAACATCAACA
65 CATTCATTAAAATATAACTTCAACA
7640717 AATATCCATCATATTAATTCAATATTGATATTAATCACATTAATTCAACTATTGATATTAATCAC
1 AATATCCATCATATTAATTCAATATTGATATTAATCACATTAATTCAACTATTGATATTAATCAC
7640782 ATTCATT-AAATATAACTTCAACA
66 ATTCATTAAAATATAACTTCAACA
7640805 AATATCCATCATATTAATTCAGATATTGATATTAATCACATTAATTCAACTATTGATATTAATCA
1 AATATCCATCATATTAATTCA-ATATTGATATTAATCACATTAATTCAACTATTGATATTAATCA
7640870 CATTCATTAAAATATAACTTCAAC-
65 CATTCATTAAAATATAACTTCAACA
7640894 AATATCCATCATATTAATT
1 AATATCCATCATATTAATT
7640913 AAAAAAATAG
Statistics
Matches: 190, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
88 36 0.19
89 121 0.64
90 33 0.17
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.38
Consensus pattern (89 bp):
AATATCCATCATATTAATTCAATATTGATATTAATCACATTAATTCAACTATTGATATTAATCAC
ATTCATTAAAATATAACTTCAACA
Found at i:7642751 original size:31 final size:31
Alignment explanation
Indices: 7642688--7642757 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
7642678 TCTGAGAGTT
* *
7642688 TACCCAAGAAAGTTCTTGGGCCACATAGGCC
1 TACCCAAGAAAGTTCTGGGGCCACAGAGGCC
* *
7642719 TACCTAAGAAAGTTCTCGGGGCCGCAGA-GCC
1 TACCCAAGAAAGTTCT-GGGGCCACAGAGGCC
7642750 TACCCAAG
1 TACCCAAG
7642758 GGTCACCTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.29, C:0.30, G:0.24, T:0.17
Consensus pattern (31 bp):
TACCCAAGAAAGTTCTGGGGCCACAGAGGCC
Found at i:7644564 original size:30 final size:30
Alignment explanation
Indices: 7644515--7644593 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
7644505 TAGGTCAAAA
* * *
7644515 TCAAAATCAACGGTTAACGGGTTGACTCAG
1 TCAAAGTCAACGATCAACGGGTTGACTCAG
* *
7644545 TCAAAGTCAAGGATCAACGGGTTGACTCAT
1 TCAAAGTCAACGATCAACGGGTTGACTCAG
7644575 TCAAAGTCAACGATCAACG
1 TCAAAGTCAACGATCAACG
7644594 ATCCAATGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (30 bp):
TCAAAGTCAACGATCAACGGGTTGACTCAG
Found at i:7645909 original size:32 final size:32
Alignment explanation
Indices: 7645872--7645932 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
7645862 TAAAAGTTAA
7645872 AAATGTAAATATATTAACAATATTTTTTATAT
1 AAATGTAAATATATTAACAATATTTTTTATAT
7645904 AAATGTAAATATATTAACAATATTTTTTA
1 AAATGTAAATATATTAACAATATTTTTTA
7645933 ACATTTTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (32 bp):
AAATGTAAATATATTAACAATATTTTTTATAT
Found at i:7646403 original size:24 final size:24
Alignment explanation
Indices: 7646367--7646421 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
7646357 TAATGGTACC
*
7646367 ATTA-TTTCATCATTATAATAAAT
1 ATTATTTTCATCATTATAATAAAA
*
7646390 ATTATTTTCCTCATTATAATAAAA
1 ATTATTTTCATCATTATAATAAAA
7646414 ATTATTTT
1 ATTATTTT
7646422 TCTGCTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTATTTTCATCATTATAATAAAA
Found at i:7646755 original size:28 final size:26
Alignment explanation
Indices: 7646696--7646754 Score: 111
Period size: 25 Copynumber: 2.3 Consensus size: 26
7646686 TTAATGGTGC
7646696 TATTTTTTCGTCATTATAATAAATAT
1 TATTTTTTCGTCATTATAATAAATAT
7646722 TA-TTTTTCGTCATTATAATAAATAT
1 TATTTTTTCGTCATTATAATAAATAT
7646747 TATTTTTT
1 TATTTTTT
7646755 TACTACAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 25 0.78
26 7 0.22
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (26 bp):
TATTTTTTCGTCATTATAATAAATAT
Found at i:7646873 original size:14 final size:14
Alignment explanation
Indices: 7646856--7646885 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7646846 ATATTTACAT
7646856 AACAATAAATCGTA
1 AACAATAAATCGTA
7646870 AACAATAAATCGTA
1 AACAATAAATCGTA
7646884 AA
1 AA
7646886 ATACTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (14 bp):
AACAATAAATCGTA
Found at i:7651861 original size:22 final size:22
Alignment explanation
Indices: 7651815--7651862 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
7651805 ATCATGACTA
*
7651815 TTCATGAAAATAATTAAGTCTT
1 TTCATGAAAATAATTAAGTCAT
* **
7651837 TTCATGAAAATAGTTATTTCAT
1 TTCATGAAAATAATTAAGTCAT
7651859 TTCA
1 TTCA
7651863 CTCTAAAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (22 bp):
TTCATGAAAATAATTAAGTCAT
Found at i:7651968 original size:20 final size:20
Alignment explanation
Indices: 7651943--7651983 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7651933 TCATTTCATT
*
7651943 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCATAACCTTTCAA
7651963 TAAAGGTCATAACCTTTCAA
1 TAAAGGTCATAACCTTTCAA
7651983 T
1 T
7651984 CCTCTCCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
TAAAGGTCATAACCTTTCAA
Found at i:7652506 original size:18 final size:18
Alignment explanation
Indices: 7652472--7652506 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7652462 ATCAATAGAC
*
7652472 AAAATAAGAGAAATTTCT
1 AAAATAAGACAAATTTCT
*
7652490 AAAATAAGACAACTTTC
1 AAAATAAGACAAATTTC
7652507 CATAGTTACG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.11, G:0.09, T:0.26
Consensus pattern (18 bp):
AAAATAAGACAAATTTCT
Found at i:7664278 original size:24 final size:24
Alignment explanation
Indices: 7664220--7664309 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 24
7664210 TATGTTATGT
* * *
7664220 TGAATTCTGTTCTGA-TACATGACA
1 TGAATTCTGTTATGATTTC-TGATA
*
7664244 TGAATTCTGTTCTGATTTCTGATA
1 TGAATTCTGTTATGATTTCTGATA
* * * *
7664268 TGGATTTTGTTATGATATCTTATA
1 TGAATTCTGTTATGATTTCTGATA
*
7664292 TGAATTCTGTTTTGATTT
1 TGAATTCTGTTATGATTT
7664310 TTTTATATCT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 52 0.96
25 2 0.04
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (24 bp):
TGAATTCTGTTATGATTTCTGATA
Found at i:7664491 original size:2 final size:2
Alignment explanation
Indices: 7664484--7664528 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7664474 GTGTTCATGT
7664484 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7664526 TA T
1 TA T
7664529 GTGTGTGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7664533 original size:2 final size:2
Alignment explanation
Indices: 7664528--7664554 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7664518 TATATATATA
7664528 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
7664555 TTTAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7682028 original size:20 final size:20
Alignment explanation
Indices: 7681983--7682028 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
7681973 GACCAACAAA
*
7681983 ATCGCAATGCGATCGCTAAT
1 ATCGCAACGCGATCGCTAAT
* *
7682003 -TCGCAACGCGATCTCTATT
1 ATCGCAACGCGATCGCTAAT
7682022 ATCGCAA
1 ATCGCAA
7682029 ATTCGCGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATCGCTAAT
Found at i:7682170 original size:41 final size:41
Alignment explanation
Indices: 7682143--7682271 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 41
7682133 GCAAATTGGG
**
7682143 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACACGATACTGACTATCGCAACGCGATAATAC
* * *
7682184 AAAATCGCAACACGATACTGACTTTCGCAACGTGATACTGAC
1 AAAATCGCAACACGATACTGACTATCGCAACGCGATAAT-AC
** * * * *
7682226 --TTTCGCAACGCGATTCTGACTTTCGCAACGAGATAATAC
1 AAAATCGCAACACGATACTGACTATCGCAACGCGATAATAC
*
7682265 AGAATCG
1 AAAATCG
7682272 TAATGCGATT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.03
40 31 0.43
41 37 0.51
42 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACACGATACTGACTATCGCAACGCGATAATAC
Found at i:7682171 original size:20 final size:20
Alignment explanation
Indices: 7682146--7682260 Score: 115
Period size: 20 Copynumber: 5.7 Consensus size: 20
7682136 AATTGGGAAA
*
7682146 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7682166 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
7682187 ATCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7682207 TTCGCAACGTGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7682227 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
7682247 TTCGCAACGAGATA
1 ATCGCAACGCGATA
7682261 ATACAGAATC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.03
20 61 0.77
21 14 0.18
22 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:7682433 original size:12 final size:12
Alignment explanation
Indices: 7682414--7682447 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7682404 CTCTCTGGCG
7682414 ACATCCGTTCCT
1 ACATCCGTTCCT
*
7682426 ATATCCGTTCCT
1 ACATCCGTTCCT
7682438 ACATCC-TTCC
1 ACATCCGTTCC
7682448 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:7683029 original size:24 final size:24
Alignment explanation
Indices: 7683002--7683048 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
7682992 GTATTCGAAA
*
7683002 TTTGATCTTGGTCAATACCCAGAC
1 TTTGATATTGGTCAATACCCAGAC
*
7683026 TTTGATATTGGTCAATACTCAGA
1 TTTGATATTGGTCAATACCCAGA
7683049 TTTTTGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCAGAC
Found at i:7683248 original size:12 final size:12
Alignment explanation
Indices: 7683231--7683255 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7683221 ATATAATCCT
7683231 GAAGAAGAAAAA
1 GAAGAAGAAAAA
7683243 GAAGAAGAAAAA
1 GAAGAAGAAAAA
7683255 G
1 G
7683256 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:7685570 original size:19 final size:19
Alignment explanation
Indices: 7685548--7685639 Score: 69
Period size: 19 Copynumber: 5.4 Consensus size: 19
7685538 AGAAATTACT
7685548 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7685567 ATCGCAACGC-AAAT----
1 ATCGCAATGCGAAATGAAA
* *
7685581 TTCACAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
7685600 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
7685614 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7685633 ATCGCAA
1 ATCGCAA
7685640 CGCAAATTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 20
0.64 0.12 0.24
Matches are distributed among these distances:
14 16 0.30
15 5 0.09
16 2 0.04
17 2 0.04
18 5 0.09
19 23 0.43
ACGTcount: A:0.45, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7685589 original size:33 final size:33
Alignment explanation
Indices: 7685552--7685648 Score: 137
Period size: 33 Copynumber: 2.9 Consensus size: 33
7685542 ATTACTATCG
7685552 CAATGCGAAATGAAAATCGCAACGCAAATTTCA
1 CAATGCGAAATGAAAATCGCAACGCAAATTTCA
*
7685585 CAATGCGAAATGAAAATCGCAACG-AGGGAA--TCG
1 CAATGCGAAATGAAAATCGCAACGCA---AATTTCA
7685618 CAATGCGAAATGAAAATCGCAACGCAAATTT
1 CAATGCGAAATGAAAATCGCAACGCAAATTT
7685649 AATTTCGCGT
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 2 0.04
32 1 0.02
33 51 0.89
34 1 0.02
35 2 0.04
ACGTcount: A:0.44, C:0.20, G:0.20, T:0.16
Consensus pattern (33 bp):
CAATGCGAAATGAAAATCGCAACGCAAATTTCA
Found at i:7685692 original size:33 final size:33
Alignment explanation
Indices: 7685650--7685730 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
7685640 CGCAAATTTA
7685650 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
*
7685683 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
*
7685716 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
7685731 AGTACTTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.44
Consensus pattern (33 bp):
ATTTCGCGTTGCGATTCTCTCGTTACGATTTTC
Found at i:7685697 original size:19 final size:19
Alignment explanation
Indices: 7685670--7685730 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
7685660 GCGATTCTCT
*
7685670 CGTTACGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
7685689 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
7685703 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
7685722 CATTGCGAT
1 CGTTGCGAT
7685731 AGTACTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
14 10 0.30
16 3 0.09
17 3 0.09
19 17 0.52
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:7685708 original size:14 final size:14
Alignment explanation
Indices: 7685656--7685712 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7685646 TTTAATTTCG
7685656 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
* *
7685670 CGTTACGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7685689 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7685703 CGTTGCGATT
1 CGTTGCGATT
7685713 TTCATTTCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7685856 original size:14 final size:14
Alignment explanation
Indices: 7685837--7685873 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7685827 CATCAATTAA
7685837 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
7685851 ACAAATCACCTTTT
1 ACAAATCAACTTTT
7685865 ACAAATCAA
1 ACAAATCAA
7685874 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:7687727 original size:91 final size:90
Alignment explanation
Indices: 7687559--7687736 Score: 286
Period size: 91 Copynumber: 1.9 Consensus size: 90
7687549 AATATATTTA
*
7687559 AAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTG
1 AAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGCAGAATTG
7687624 GCAGCAACCGAATAAATTTACTTCAACC
63 GCAGCAACCGAATAAATTTACTTCAACC
*
7687652 AAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCAGTATTGG
1 AAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTGG
7687716 CAGCAACCGAATAAATTTACT
64 CAGCAACCGAATAAATTTACT
7687737 AAGCAATCTA
Statistics
Matches: 81, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
91 42 0.52
93 12 0.15
95 27 0.33
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.21
Consensus pattern (90 bp):
AAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTGGCA
GCAACCGAATAAATTTACTTCAACC
Found at i:7689506 original size:33 final size:33
Alignment explanation
Indices: 7689449--7689536 Score: 158
Period size: 33 Copynumber: 2.6 Consensus size: 33
7689439 ACGAGATAAT
7689449 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
7689483 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
7689516 GAGAATCGCAACGCGAAATGA
1 GAGAATCGCAACGCGAAATGA
7689537 AAAGCGCAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
33 39 0.74
34 14 0.26
ACGTcount: A:0.39, C:0.23, G:0.27, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:7689544 original size:19 final size:19
Alignment explanation
Indices: 7689424--7689607 Score: 181
Period size: 19 Copynumber: 10.1 Consensus size: 19
7689414 TCTTTTGGTT
*
7689424 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
7689443 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
7689463 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
7689481 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
7689497 GAAATGACTATCGCGA--C
1 GAAATGAAAATCGCAACGC
*
7689514 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
7689530 GAAATGAAAAGCGCAACGC
1 GAAATGAAAATCGCAACGC
7689549 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
7689568 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
7689587 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
7689606 GA
1 GA
7689608 TTTTGGTTTC
Statistics
Matches: 137, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
14 17 0.12
15 2 0.01
16 4 0.03
17 3 0.02
18 3 0.02
19 79 0.58
20 27 0.20
21 2 0.01
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:7689636 original size:19 final size:19
Alignment explanation
Indices: 7689603--7689669 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
7689593 AAAATCGCAA
**
7689603 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
7689622 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
**
7689641 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
7689661 TGCGATTTT
1 TGCGATTTT
7689670 CATTCTCGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 29 0.71
20 12 0.29
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:7690238 original size:20 final size:20
Alignment explanation
Indices: 7690187--7690239 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
7690177 ACGCTATGTA
*
7690187 AATCGCGTTGCAAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
*
7690207 AATCGCATTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
7690227 TATCTCGTTGCGA
1 AATCGCGTTGCGA
7690240 TTTTGTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:7690273 original size:20 final size:20
Alignment explanation
Indices: 7690201--7690281 Score: 83
Period size: 20 Copynumber: 4.0 Consensus size: 20
7690191 GCGTTGCAAA
* *
7690201 AGTCAGAATCGCATTGCGAA
1 AGTCAGTATCGCATTGCGAT
* *
7690221 AGTCAGTATCTCGTTGCGATTT
1 AGTCAGTATCGCATTGCGA--T
* *
7690243 TGT-ATTATCGCATTGCGAT
1 AGTCAGTATCGCATTGCGAT
7690262 AGTCAGTATCGCATTGCGAT
1 AGTCAGTATCGCATTGCGAT
7690282 TTTCCCAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.06
20 31 0.65
21 12 0.25
22 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (20 bp):
AGTCAGTATCGCATTGCGAT
Found at i:7690392 original size:21 final size:21
Alignment explanation
Indices: 7690352--7690392 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7690342 ACTGTAGACC
**
7690352 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
7690373 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
7690393 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:7692453 original size:35 final size:35
Alignment explanation
Indices: 7692413--7692599 Score: 153
Period size: 35 Copynumber: 5.3 Consensus size: 35
7692403 GTAATATGTA
* *
7692413 ATGTGTCGTATTCAGATAATGCACAACATTGTGTC
1 ATGTGTCGCATTCAGATAATGCACAACAGTGTGTC
* * ** *
7692448 ATGTGT-GACGTTCAGATAATGAACAGTAATGTGTC
1 ATGTGTCG-CATTCAGATAATGCACAACAGTGTGTC
* * * * * *
7692483 ATGCGTCACTTTTAGATAATGCATAGCAGTGTGTC
1 ATGTGTCGCATTCAGATAATGCACAACAGTGTGTC
* * * *
7692518 ATGTGTCACGTTCAAATAATGCATAACAGTGTGTC
1 ATGTGTCGCATTCAGATAATGCACAACAGTGTGTC
** * *
7692553 ATGT-TCCGCATTCAGATAATATAGAATAGTGTGTC
1 ATGTGT-CGCATTCAGATAATGCACAACAGTGTGTC
7692588 ATGTGTCGCATT
1 ATGTGTCGCATT
7692600 TAGAGTATAC
Statistics
Matches: 122, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
34 2 0.02
35 119 0.98
36 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (35 bp):
ATGTGTCGCATTCAGATAATGCACAACAGTGTGTC
Found at i:7695536 original size:20 final size:19
Alignment explanation
Indices: 7695511--7695548 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
7695501 TTAAATCAAG
7695511 TAAAAC-TATCATATGATATT
1 TAAAACATAT-ATAT-ATATT
7695531 TAAAACATATATATATAT
1 TAAAACATATATATATAT
7695549 ATATCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 10 0.59
21 3 0.18
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (19 bp):
TAAAACATATATATATATT
Found at i:7699918 original size:19 final size:20
Alignment explanation
Indices: 7699885--7699923 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
7699875 ATTTCCTTTG
7699885 TTTAGTTTAAATATTATTAT
1 TTTAGTTTAAATATTATTAT
7699905 TTTAGTTT-AATATTATTAT
1 TTTAGTTTAAATATTATTAT
7699924 ATACATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTAGTTTAAATATTATTAT
Found at i:7703394 original size:22 final size:22
Alignment explanation
Indices: 7703369--7703417 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
7703359 AATTTGATTT
7703369 GGTCCTCACACTAATGCTCGAG
1 GGTCCTCACACTAATGCTCGAG
7703391 GGTCCTCACACTAATGCTCGAG
1 GGTCCTCACACTAATGCTCGAG
7703413 GGTCC
1 GGTCC
7703418 AAATTGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.33, G:0.24, T:0.22
Consensus pattern (22 bp):
GGTCCTCACACTAATGCTCGAG
Found at i:7707373 original size:20 final size:20
Alignment explanation
Indices: 7707348--7707394 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7707338 GTGTTTTCAT
7707348 ATTTTAAAAACTATAAAAAC
1 ATTTTAAAAACTATAAAAAC
* * * *
7707368 ATTTTAAACACTTTAAATAT
1 ATTTTAAAAACTATAAAAAC
7707388 ATTTTAA
1 ATTTTAA
7707395 TTAACTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTAAAAACTATAAAAAC
Found at i:7720642 original size:10 final size:10
Alignment explanation
Indices: 7720629--7720707 Score: 56
Period size: 10 Copynumber: 7.6 Consensus size: 10
7720619 CTTGAAGATG
7720629 AAAAAAGAAA
1 AAAAAAGAAA
*
7720639 AAAAATGAAA
1 AAAAAAGAAA
7720649 AATTAAAA-AATA
1 AA--AAAAGAA-A
7720661 AAAAAA-AATGA
1 AAAAAAGAA--A
7720672 AAAAAATG-AA
1 AAAAAA-GAAA
*
7720682 AAAAATGAAA
1 AAAAAAGAAA
*
7720692 AAAAATGAAA
1 AAAAAAGAAA
7720702 AAAAAA
1 AAAAAA
7720708 ACAAAACAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
9 1 0.02
10 40 0.70
11 9 0.16
12 7 0.12
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7720643 original size:9 final size:9
Alignment explanation
Indices: 7720629--7720706 Score: 70
Period size: 9 Copynumber: 8.7 Consensus size: 9
7720619 CTTGAAGATG
7720629 AAAAAAGAA
1 AAAAAAGAA
7720638 AAAAAATGAA
1 AAAAAA-GAA
**
7720648 AAATTA-AA
1 AAAAAAGAA
*
7720656 AAATAA-AA
1 AAAAAAGAA
*
7720664 AAAAATGAA
1 AAAAAAGAA
*
7720673 AAAAATGAA
1 AAAAAAGAA
*
7720682 AAAAATGAA
1 AAAAAAGAA
7720691 AAAAAATGAA
1 AAAAAA-GAA
7720701 AAAAAA
1 AAAAAA
7720707 AACAAAACAA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
8 13 0.22
9 31 0.52
10 16 0.27
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.10
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:7720657 original size:18 final size:17
Alignment explanation
Indices: 7720626--7720713 Score: 90
Period size: 17 Copynumber: 5.1 Consensus size: 17
7720616 TTGCTTGAAG
*
7720626 ATGAAAAAAGAAAAAAA
1 ATGAAAAAATAAAAAAA
*
7720643 ATGAAAAATTAAAAAATA
1 ATGAAAAAATAAAAAA-A
* *
7720661 A-AAAAAAATGAAAAAA
1 ATGAAAAAATAAAAAAA
7720677 ATGAAAAAAATGAAAAAAA
1 ATG-AAAAAAT-AAAAAAA
7720696 ATGAAAAAA-AAAACAAA
1 ATGAAAAAATAAAA-AAA
7720713 A
1 A
7720714 CAAAAACAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
16 6 0.10
17 29 0.49
18 15 0.25
19 9 0.15
ACGTcount: A:0.81, C:0.01, G:0.08, T:0.10
Consensus pattern (17 bp):
ATGAAAAAATAAAAAAA
Found at i:7722165 original size:54 final size:54
Alignment explanation
Indices: 7722056--7723102 Score: 1693
Period size: 54 Copynumber: 19.7 Consensus size: 54
7722046 GCAACAGAAG
*
7722056 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAG-G-GTGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722107 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGAAGAAT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGAAGATT
*
7722161 ATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722214 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGAAGAAT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGAAGATT
* *
7722268 ATTGTTTGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722321 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
* *
7722375 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAG-G-GTGGACCCGGAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
* *
7722426 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGAAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
7722480 ATTGTTCGAG-TCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
7722533 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722586 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722640 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAGAGAGCGGACCTGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722693 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722747 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722801 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAG-G-GTGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
* * *
7722852 ATTGTTCAAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCTCGTAGGAAGAAT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGAAGATT
* * *
7722906 ATTGTTCGAGTTC-TACTCCCTGAAGAAAAATAGAGCGGACTCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7722959 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGAAGAAT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGAAGATT
*
7723013 ATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
*
7723067 ATTGTTCGAGTTC-TACTCCCTGAAGAAATAGGGAGC
1 ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGC
7723103 AAACACGATT
Statistics
Matches: 931, Mismatches: 42, Indels: 44
0.92 0.04 0.04
Matches are distributed among these distances:
51 73 0.08
52 55 0.06
53 363 0.39
54 438 0.47
55 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (54 bp):
ATTGTTCGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATT
Found at i:7722240 original size:107 final size:107
Alignment explanation
Indices: 7722051--7723102 Score: 1709
Period size: 107 Copynumber: 9.9 Consensus size: 107
7722041 GTGAAGCAAC
* * *
7722051 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAATAG-G-GTGGACCCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
7722114 GAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGA
7722156 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
7722221 GAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGA
*
7722263 AGAATATTGTTTGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
*
7722328 GAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
* * * *
7722370 AGATTATTGTTCGAGTTCTACTCCCTGAAGAAATAG-G-GTGGACCCGGAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
* *
7722433 GAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGAA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
* *
7722475 AGATTATTGTTCGAG-TCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTT
1 AGAATATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
7722539 CGAGTTC-TACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
65 CGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
*
7722581 AGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
1 AGAATATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
*
7722646 CGAGTTC-TACTCCCTGAAGAAATAGAGAGCGGACCTGTAGGA
65 CGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
*
7722688 AGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
1 AGAATATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
*
7722753 CGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGA
65 CGAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
* * *
7722796 AGATTATTGTTCGAGTTCTACTCCCTGAAGAAATAG-G-GTGGACCCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
* *
7722859 AAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCTCGTAGGA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGA
* *
7722901 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAATAGAGCGGACTCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
7722966 GAGTTCTTACTCCCTGAAGAAATAGAGAGC-GAGCCCGTAGGA
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGA-CCCGTAGGA
7723008 AGAATATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
1 AGAATATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTT
*
7723073 CGAGTTC-TACTCCCTGAAGAAATAGGGAGC
65 CGAGTTCTTACTCCCTGAAGAAATAGAGAGC
7723103 AAACACGATT
Statistics
Matches: 901, Mismatches: 34, Indels: 22
0.94 0.04 0.02
Matches are distributed among these distances:
104 4 0.00
105 226 0.25
106 53 0.06
107 514 0.57
108 104 0.12
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (107 bp):
AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTC
GAGTTCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGA
Found at i:7722888 original size:426 final size:426
Alignment explanation
Indices: 7722051--7723102 Score: 1850
Period size: 426 Copynumber: 2.5 Consensus size: 426
7722041 GTGAAGCAAC
* *
7722051 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAATAG-G-GTGGACCCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTTC
7722114 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTC-TACT
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTTACT
7722178 CCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAA
131 CCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTC-TACTCCCTGAAGAAA
*
7722243 TAGAGAGCGAGCCCGTAGGAAGAATATTGTTTGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGAC
195 TAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGAC
7722308 CCGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGA
260 CCGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGA
*
7722373 TTATTGTTCGAGTTCTACTCCCTGAAGAAATAGGGTGGACCCGGAGGAAGATTATTGTTCGAGTT
325 TTATTGTTCGAGTTCTACTCCCTGAAGAAATAGGGTGGACCCGGAGGAAGATTATTGTTCAAGTT
7722438 CTTACTCCCTGAAGAAAAAGAGAGCG-GACCCGTAGAA
390 CTTACTCCCTGAAGAAAAAGAGAGCGAG-CCCGTAGAA
*
7722475 AGATTATTGTTCGAG-TCTTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTT
1 AGAATATTGTTCGAGTTC-TACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTT
*
7722539 CGAGTTC-TACTCCCTGAAGAAATAGAGAGCG-GACCCGTAGGAAGATTATTGTTCGAGTTCTTA
65 CGAGTTCTTACTCCCTGAAGAAATAGAGAGCGAG-CCCGTAGGAAGAATATTGTTCGAGTTCTTA
7722602 CTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTACTCCCTGAAGAA
129 CTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTACTCCCTGAAGAA
* *
7722667 ATAGAGAGCG-GACCTGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCG
194 ATAGAGAGCGAG-CCCGTAGGAAGAATATTGTTCGAGTTC-TACTCCCTGAAGAAAAAGAGAGCG
7722731 GACCCGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGA
257 GACCCGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGA
*
7722796 AGATTATTGTTCGAGTTCTACTCCCTGAAGAAATAGGGTGGACCCGTAGGAAGATTATTGTTCAA
322 AGATTATTGTTCGAGTTCTACTCCCTGAAGAAATAGGGTGGACCCGGAGGAAGATTATTGTTCAA
* * *
7722861 GTTCTTACTCCCTGAAGAAATAGAGAGCGAGCTCGTAGGA
387 GTTCTTACTCCCTGAAGAAAAAGAGAGCGAGCCCGTAGAA
* * *
7722901 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAATAGAGCGGACTCGTAGGAAGATTATTGTTC
1 AGAATATTGTTCGAGTTCTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTTC
7722966 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTTACT
66 GAGTTCTTACTCCCTGAAGAAATAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTTACT
7723031 CCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTACTCCCTGAAGAAAT
131 CCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTACTCCCTGAAGAAAT
*
7723096 AGGGAGC
196 AGAGAGC
7723103 AAACACGATT
Statistics
Matches: 599, Mismatches: 18, Indels: 19
0.94 0.03 0.03
Matches are distributed among these distances:
423 2 0.00
424 33 0.06
425 99 0.17
426 335 0.56
427 129 0.22
428 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (426 bp):
AGAATATTGTTCGAGTTCTACTCCCTGAAGAAATAGAGAGCGGACCCGTAGGAAGATTATTGTTC
GAGTTCTTACTCCCTGAAGAAATAGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTTACT
CCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGATTATTGTTCGAGTTCTACTCCCTGAAGAAAT
AGAGAGCGAGCCCGTAGGAAGAATATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGGACC
CGTAGGAAGATTATTGTTCGAGTTCTTACTCCCTGAAGAAAAAGAGAGCGGACCCGTAGGAAGAT
TATTGTTCGAGTTCTACTCCCTGAAGAAATAGGGTGGACCCGGAGGAAGATTATTGTTCAAGTTC
TTACTCCCTGAAGAAAAAGAGAGCGAGCCCGTAGAA
Found at i:7727429 original size:33 final size:33
Alignment explanation
Indices: 7727392--7727595 Score: 126
Period size: 33 Copynumber: 5.9 Consensus size: 33
7727382 TACCATAAAT
* *
7727392 TGAACTTTCATGGAAATAAATTATATCAAAACA
1 TGAACTTTCATGGAAATAACTTATATCATAACA
* * **
7727425 TGAACTTTCTTGGCAGGAACTTATAT-AGTAACA
1 TGAACTTTCATGGAAATAACTTATATCA-TAACA
* * * *
7727458 TGTAAATTTTCATGGTAAGCACAAATATCATATTTCATCATATA
1 TG--AACTTTCATGG-AA--ATAACT-T-ATA--TCAT-A-ACA
7727502 TG-ACTTTCATGGAAATAACTTATATCATAACA
1 TGAACTTTCATGGAAATAACTTATATCATAACA
*
7727534 TGAATTTTCAT-GAAGATAACTTATATCATAACA
1 TGAACTTTCATGGAA-ATAACTTATATCATAACA
* * * **
7727567 TGGACTTTCATAGCAACCACTTATATCAT
1 TGAACTTTCATGGAAATAACTTATATCAT
7727596 TTACTTTACT
Statistics
Matches: 132, Mismatches: 23, Indels: 32
0.71 0.12 0.17
Matches are distributed among these distances:
32 8 0.06
33 74 0.56
34 6 0.05
35 9 0.07
36 4 0.03
37 1 0.01
38 7 0.05
39 1 0.01
40 5 0.04
41 9 0.07
42 2 0.02
43 2 0.02
44 4 0.03
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (33 bp):
TGAACTTTCATGGAAATAACTTATATCATAACA
Found at i:7727573 original size:18 final size:17
Alignment explanation
Indices: 7727519--7727573 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
7727509 CATGGAAATA
7727519 ACTTATATCATAACATG
1 ACTTATATCATAACATG
* * *
7727536 AATT-T-TCATGAAGATA
1 ACTTATATCAT-AACATG
7727552 ACTTATATCATAACATGG
1 ACTTATATCATAACAT-G
7727570 ACTT
1 ACTT
7727574 TCATAGCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 7
0.68 0.15 0.17
Matches are distributed among these distances:
15 4 0.14
16 8 0.29
17 8 0.29
18 8 0.29
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (17 bp):
ACTTATATCATAACATG
Found at i:7728584 original size:17 final size:19
Alignment explanation
Indices: 7728541--7728586 Score: 69
Period size: 17 Copynumber: 2.5 Consensus size: 19
7728531 CAAATACATG
7728541 TATCCCAAAACCCGGTATA
1 TATCCCAAAACCCGGTATA
*
7728560 TATACCAAAACCC-G-ATA
1 TATCCCAAAACCCGGTATA
7728577 TATCCCAAAA
1 TATCCCAAAA
7728587 TACTATTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 12 0.48
18 1 0.04
19 12 0.48
ACGTcount: A:0.43, C:0.30, G:0.07, T:0.20
Consensus pattern (19 bp):
TATCCCAAAACCCGGTATA
Found at i:7729982 original size:36 final size:36
Alignment explanation
Indices: 7729935--7730008 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
7729925 CTTAGAATCA
* *
7729935 CTTCTATTACAACTTACGGTATTAATTACACAAACT
1 CTTCTATTACAACATACGATATTAATTACACAAACT
*
7729971 CTTCTATTACAACATACGATATTAATTATACAAACT
1 CTTCTATTACAACATACGATATTAATTACACAAACT
7730007 CT
1 CT
7730009 CAAAGCTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (36 bp):
CTTCTATTACAACATACGATATTAATTACACAAACT
Found at i:7731110 original size:21 final size:21
Alignment explanation
Indices: 7731084--7731181 Score: 87
Period size: 21 Copynumber: 4.7 Consensus size: 21
7731074 ATCAGTTTCC
7731084 AAAATCGCAACGCGATTATTG
1 AAAATCGCAACGCGATTATTG
* *
7731105 AAAATCGCAATGCGA-TAGT-
1 AAAATCGCAACGCGATTATTG
** *
7731124 ACAAATTCGCATTGCGATT-TTCC
1 A-AAA-TCGCAACGCGATTATT-G
*
7731147 AAAATCGCAACGCGAATA-TG
1 AAAATCGCAACGCGATTATTG
7731167 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
7731182 ACACATAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.02
20 21 0.33
21 36 0.57
22 4 0.06
23 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTATTG
Found at i:7731172 original size:20 final size:20
Alignment explanation
Indices: 7731148--7731341 Score: 210
Period size: 20 Copynumber: 9.7 Consensus size: 20
7731138 CGATTTTCCA
** *
7731148 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
7731168 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
7731188 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
7731208 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGAATCCGT
* **
7731228 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGAATCCGT
* *
7731248 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
7731268 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
7731288 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
7731308 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
7731328 AAATCGCAACGCGA
1 AAATCGCAACGCGA
7731342 TATTTAAAGC
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 148 0.99
21 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:7731760 original size:33 final size:33
Alignment explanation
Indices: 7731721--7731791 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
7731711 TTCACTTAGA
* *
7731721 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
* *
7731754 TTTCATTTCGCGTTGCTATTCTCTCGTTCCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
7731787 TTTCA
1 TTTCA
7731792 AGTTAGTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
Found at i:7731928 original size:41 final size:38
Alignment explanation
Indices: 7731864--7731980 Score: 136
Period size: 41 Copynumber: 3.1 Consensus size: 38
7731854 TTCAATTTGC
* *
7731864 AGAAGAGTCGCAACGAGATAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
7731902 AGAATGACTGTCGCAACGAGAGAAATGACAATCGCAACGAG
1 AGAAT-A--GTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
7731943 AG-A-A-TCGCAAC--GCGAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
7731976 AGAAT
1 AGAAT
7731981 CGCAACGCGA
Statistics
Matches: 69, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
33 22 0.32
34 1 0.01
35 7 0.10
38 5 0.07
39 1 0.01
40 1 0.01
41 32 0.46
ACGTcount: A:0.45, C:0.18, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
Found at i:7731944 original size:21 final size:21
Alignment explanation
Indices: 7731871--7731946 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
7731861 TGCAGAAGAG
* *
7731871 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGACAA
**
7731892 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGACAA
7731912 TCGCAACGAGAGAAATGACAA
1 TCGCAACGAGAGAAATGACAA
7731933 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
7731947 TCGCAACGCG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGACAA
Found at i:7731950 original size:14 final size:14
Alignment explanation
Indices: 7731931--7731987 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7731921 GAGAAATGAC
7731931 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7731945 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7731964 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7731978 AATCGCAACG
1 AATCGCAACG
7731988 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7731968 original size:33 final size:33
Alignment explanation
Indices: 7731923--7731992 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
7731913 CGCAACGAGA
*
7731923 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7731956 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7731989 GAAA
1 GAAA
7731993 CCAAATCGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.46, C:0.21, G:0.24, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7732025 original size:19 final size:18
Alignment explanation
Indices: 7731998--7732114 Score: 62
Period size: 19 Copynumber: 7.1 Consensus size: 18
7731988 CGAAACCAAA
*
7731998 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCA-T
7732017 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
* *
7732031 TCTCG-TGCGATTGTCATT
1 TCGCGTTGCGATTTTCA-T
7732049 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
* *
7732063 TCTCGTTGCGATTGTCAT
1 TCGCGTTGCGATTTTCAT
7732081 CTCGCGTTGCGA--TTC--
1 -TCGCGTTGCGATTTTCAT
*
7732096 TCTCGTTGCGATTTTCAT
1 TCGCGTTGCGATTTTCAT
7732114 T
1 T
7732115 TCAACCAAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 31
0.64 0.09 0.27
Matches are distributed among these distances:
13 5 0.07
14 24 0.33
15 2 0.03
16 5 0.07
17 7 0.10
18 5 0.07
19 25 0.34
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.43
Consensus pattern (18 bp):
TCGCGTTGCGATTTTCAT
Found at i:7732071 original size:14 final size:14
Alignment explanation
Indices: 7732020--7732108 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
7732010 TTTCATTTCG
7732020 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7732034 CG-TGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
7732052 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7732066 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
7732083 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
7732099 CGTTGCGATT
1 CGTTGCGATT
7732109 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 2, Indels: 22
0.72 0.02 0.26
Matches are distributed among these distances:
13 5 0.08
14 23 0.37
15 3 0.05
16 5 0.08
17 7 0.11
18 6 0.10
19 13 0.21
ACGTcount: A:0.09, C:0.26, G:0.25, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7732078 original size:33 final size:33
Alignment explanation
Indices: 7732003--7732116 Score: 194
Period size: 33 Copynumber: 3.5 Consensus size: 33
7731993 CCAAATCGCA
*
7732003 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
7732036 -TGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
*
7732068 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
*
7732101 TTGCGATTTTCATTTC
1 TTGCGATTGTCATTTC
7732117 AACCAAAAGA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
32 31 0.41
33 45 0.59
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
Found at i:7733970 original size:93 final size:93
Alignment explanation
Indices: 7733811--7734284 Score: 930
Period size: 93 Copynumber: 5.1 Consensus size: 93
7733801 TAGATTGCTT
*
7733811 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7733876 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7733904 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7733969 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7733997 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7734062 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
7734090 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTATAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7734155 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7734183 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7734248 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7734276 AGTAAATTT
1 AGTAAATTT
7734285 ATCCATTCAA
Statistics
Matches: 378, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 378 1.00
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:7734387 original size:19 final size:18
Alignment explanation
Indices: 7734328--7734455 Score: 110
Period size: 19 Copynumber: 7.3 Consensus size: 18
7734318 TAGTTTACTT
*
7734328 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC--AAAA
*
7734348 TCGCAACGCGAAACCAAA
1 TCGCAACGCGAAACAAAA
*
7734366 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAA-CAAAA
*
7734385 TCGCAA--CG--ACAGAA
1 TCGCAACGCGAAACAAAA
7734399 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAA-CAAAA
*
7734418 TCGCAA--CG--ACAAGA
1 TCGCAACGCGAAACAAAA
7734432 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAA-CAAAA
7734451 TCGCA
1 TCGCA
7734456 TTGCGATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
14 19 0.22
15 2 0.02
16 4 0.05
17 4 0.05
18 18 0.20
19 28 0.32
20 13 0.15
ACGTcount: A:0.45, C:0.29, G:0.17, T:0.09
Consensus pattern (18 bp):
TCGCAACGCGAAACAAAA
Found at i:7734406 original size:33 final size:32
Alignment explanation
Indices: 7734362--7734455 Score: 152
Period size: 33 Copynumber: 2.9 Consensus size: 32
7734352 AACGCGAAAC
**
7734362 CAAATCGCAACGCGAAATGAAAATCGCAACGA
1 CAAATCGCAACGCGAAACCAAAATCGCAACGA
7734394 CAGAATCGCAACGCGAAACCAAAATCGCAACGA
1 CA-AATCGCAACGCGAAACCAAAATCGCAACGA
7734427 CAAGATCGCAACGCGAAACCAAAATCGCA
1 CAA-ATCGCAACGCGAAACCAAAATCGCA
7734456 TTGCGATTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 3 0.05
33 55 0.95
ACGTcount: A:0.46, C:0.29, G:0.18, T:0.07
Consensus pattern (32 bp):
CAAATCGCAACGCGAAACCAAAATCGCAACGA
Found at i:7734473 original size:19 final size:19
Alignment explanation
Indices: 7734451--7734585 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
7734441 GAAACCAAAA
*
7734451 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7734470 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
7734486 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
7734503 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
7734519 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
7734536 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
7734555 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
7734575 TCGTGTTGCGA
1 TCGCGTTGCGA
7734586 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7734492 original size:14 final size:14
Alignment explanation
Indices: 7734473--7734529 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7734463 TTTCATTTCG
7734473 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
7734487 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
7734504 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
7734520 CGTTGCGATT
1 CGTTGCGATT
7734530 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:7734498 original size:33 final size:33
Alignment explanation
Indices: 7734456--7734548 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
7734446 CAAAATCGCA
*
7734456 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
7734489 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
7734522 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
7734549 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:7736670 original size:19 final size:19
Alignment explanation
Indices: 7736646--7736745 Score: 138
Period size: 19 Copynumber: 5.5 Consensus size: 19
7736636 AAAATTGACT
7736646 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7736665 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7736684 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
7736698 ATCGCAATGCGAAATTAAA
1 ATCGCAATGCGAAATGAAA
7736717 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
7736737 ATCGCAATG
1 ATCGCAATG
7736746 GGAGAATCGC
Statistics
Matches: 71, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 38 0.54
20 17 0.24
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7736724 original size:52 final size:53
Alignment explanation
Indices: 7736646--7736762 Score: 200
Period size: 53 Copynumber: 2.2 Consensus size: 53
7736636 AAAATTGACT
7736646 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
* * *
7736698 ATCGCAATGCGAAATTAAAATCGCAATGCGGAAATGAAAATCGCAATGGGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
7736751 ATCGCAATGCGA
1 ATCGCAATGCGA
7736763 TTTAATTTCG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
52 28 0.46
53 33 0.54
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:7736831 original size:52 final size:52
Alignment explanation
Indices: 7736752--7736867 Score: 198
Period size: 52 Copynumber: 2.2 Consensus size: 52
7736742 AATGGGAGAA
*
7736752 TCGCAATGCGA-TTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
* *
7736803 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
7736855 TCGCATTGCGATT
1 TCGCATTGCGATT
7736868 CTCTCGTTGC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
51 10 0.16
52 51 0.84
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (52 bp):
TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
Found at i:7736845 original size:33 final size:33
Alignment explanation
Indices: 7736808--7736899 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
7736798 TCATTTCGCA
7736808 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
7736841 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
7736874 TTGCGATTTTCATTTCCGCATTGCGA
1 TTGCGATTTTCATTT-CGCATTGCGA
7736900 AATGTAATGG
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 48 0.83
34 10 0.17
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:7736846 original size:14 final size:14
Alignment explanation
Indices: 7736827--7736881 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
7736817 TCATTTCGCA
7736827 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
7736841 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
7736858 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
7736874 TTGCGATT
1 TTGCGATT
7736882 TTCATTTCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 14 0.41
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:7736982 original size:19 final size:19
Alignment explanation
Indices: 7736958--7737074 Score: 181
Period size: 19 Copynumber: 6.4 Consensus size: 19
7736948 AAAATTGACT
7736958 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7736977 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7736996 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7737015 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
7737029 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7737048 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
7737068 ATCGCAA
1 ATCGCAA
7737075 CGAGAGAATC
Statistics
Matches: 90, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 58 0.64
20 16 0.18
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7737037 original size:33 final size:36
Alignment explanation
Indices: 7736958--7737074 Score: 159
Period size: 33 Copynumber: 3.2 Consensus size: 36
7736948 AAAATTGACT
7736958 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAA
*
7736996 ATCGCAATGCGAAATGAAAATCGCAA-CG-A-GAGA
1 ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
7737029 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GC-G-AATGAAA
7737068 ATCGCAA
1 ATCGCAA
7737075 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
33 29 0.41
34 1 0.01
35 1 0.01
36 3 0.04
38 27 0.38
39 10 0.14
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (36 bp):
ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
Found at i:7737106 original size:53 final size:53
Alignment explanation
Indices: 7736976--7737093 Score: 229
Period size: 53 Copynumber: 2.2 Consensus size: 53
7736966 GCGAAATGAA
7736976 AATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
7737028 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
7737081 AATCGCAATGCGA
1 AATCGCAATGCGA
7737094 TTTTCATTTC
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.46
53 35 0.54
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
Found at i:7739429 original size:12 final size:12
Alignment explanation
Indices: 7739412--7739436 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7739402 TCTTCGGGGA
7739412 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7739424 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7739436 C
1 C
7739437 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7739645 original size:24 final size:24
Alignment explanation
Indices: 7739611--7739657 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7739601 CTGAAACATC
7739611 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
7739635 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
7739658 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:7740367 original size:20 final size:20
Alignment explanation
Indices: 7740339--7740588 Score: 252
Period size: 20 Copynumber: 12.5 Consensus size: 20
7740329 AAATTTCAGT
* * *
7740339 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
7740359 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
7740379 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
* **
7740399 GTTGTGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
7740419 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
*
7740439 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
7740459 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* **
7740479 ATTGCGATTTACCCATAT-GC
1 GTTGCGATTTACGGAT-TCGC
*
7740499 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
7740519 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
7740539 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
7740559 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
7740579 GTTGCGATTT
1 GTTGCGATTT
7740589 TGGAAAATCG
Statistics
Matches: 196, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
20 195 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:7740605 original size:21 final size:21
Alignment explanation
Indices: 7740575--7740657 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
7740565 ATTTTCATAT
*
7740575 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
7740596 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
7740617 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
7740638 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
7740658 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:7740648 original size:42 final size:43
Alignment explanation
Indices: 7740555--7740653 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
7740545 ATTTATGTGT
* *
7740555 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
7740596 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
7740638 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
7740654 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:7745811 original size:20 final size:18
Alignment explanation
Indices: 7745788--7745826 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7745778 TAATAGTGAG
7745788 TTATAAATAATATATTTTTA
1 TTAT-AATAATAT-TTTTTA
*
7745808 TTATAATTATATTTTTTA
1 TTATAATAATATTTTTTA
7745826 T
1 T
7745827 ATTTTGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATAATAATATTTTTTA
Found at i:7746479 original size:21 final size:21
Alignment explanation
Indices: 7746450--7746495 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7746440 TAGTTTACCT
*
7746450 ATTTTAAT-CCTAAATTCTAGA
1 ATTTGAATCCCTAAATTCTA-A
*
7746471 ATTTGAATCCCTAAATTTTAA
1 ATTTGAATCCCTAAATTCTAA
7746492 ATTT
1 ATTT
7746496 AGACTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (21 bp):
ATTTGAATCCCTAAATTCTAA
Found at i:7761863 original size:15 final size:13
Alignment explanation
Indices: 7761816--7761866 Score: 95
Period size: 13 Copynumber: 4.0 Consensus size: 13
7761806 TCTTTTTCAT
7761816 AATAA-ATATTGC
1 AATAATATATTGC
7761828 AATAATATATTGC
1 AATAATATATTGC
7761841 AATAATATATTGC
1 AATAATATATTGC
7761854 AATAATATATTGC
1 AATAATATATTGC
7761867 TGACCAATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 5 0.13
13 33 0.87
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (13 bp):
AATAATATATTGC
Found at i:7762241 original size:20 final size:20
Alignment explanation
Indices: 7762216--7762290 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
7762206 AACACAACTA
7762216 TTCGCAACGCGAATTTCGTT
1 TTCGCAACGCGAATTTCGTT
7762236 TTCGCAACGCGAATTTCGTT
1 TTCGCAACGCGAATTTCGTT
* *
7762256 TTCGCAACGTGAATTTCATT
1 TTCGCAACGCGAATTTCGTT
*
7762276 TTCGCAACTCGAATT
1 TTCGCAACGCGAATT
7762291 CGCCAATTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (20 bp):
TTCGCAACGCGAATTTCGTT
Found at i:7762911 original size:20 final size:20
Alignment explanation
Indices: 7762888--7762938 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
7762878 CTAATTATGT
7762888 GTTGCGAATTTCAAATTGAC
1 GTTGCGAATTTCAAATTGAC
7762908 GTTGCGAATTTCAAATTGAC
1 GTTGCGAATTTCAAATTGAC
7762928 GTTGCGAATTT
1 GTTGCGAATTT
7762939 GGAAACTGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (20 bp):
GTTGCGAATTTCAAATTGAC
Found at i:7762951 original size:20 final size:20
Alignment explanation
Indices: 7762885--7762998 Score: 101
Period size: 20 Copynumber: 5.8 Consensus size: 20
7762875 ATTCTAATTA
*
7762885 TGTGTTGCGAATTT-CAAAT
1 TGTGTTGCGAATTTGGAAAT
* *
7762904 TGACGTTGCGAATTT-CAAAT
1 TG-TGTTGCGAATTTGGAAAT
* *
7762924 TGACGTTGCGAATTTGGAAAC
1 TG-TGTTGCGAATTTGGAAAT
* *
7762945 TGTGTTGCGAAATTGG-AGT
1 TGTGTTGCGAATTTGGAAAT
*
7762964 TCGTGTTGCAAATTT-GAAAT
1 T-GTGTTGCGAATTTGGAAAT
7762984 TGTGTTGCGAATTTG
1 TGTGTTGCGAATTTG
7762999 TTGGTTATTT
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
19 17 0.22
20 57 0.72
21 5 0.06
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.38
Consensus pattern (20 bp):
TGTGTTGCGAATTTGGAAAT
Found at i:7764604 original size:17 final size:18
Alignment explanation
Indices: 7764572--7764605 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7764562 TAAATTATAA
7764572 AAAAGCCCCAAAATCCTT
1 AAAAGCCCCAAAATCCTT
*
7764590 AAAATCCCC-AAATCCT
1 AAAAGCCCCAAAATCCT
7764606 AACCTTAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.35, G:0.03, T:0.18
Consensus pattern (18 bp):
AAAAGCCCCAAAATCCTT
Found at i:7765857 original size:17 final size:16
Alignment explanation
Indices: 7765826--7765856 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7765816 AATATTGAAA
*
7765826 CTTGAACTCAAAAAAG
1 CTTGAACTAAAAAAAG
7765842 CTTGAACTAAAAAAA
1 CTTGAACTAAAAAAA
7765857 ATTAGAAGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.10, T:0.19
Consensus pattern (16 bp):
CTTGAACTAAAAAAAG
Found at i:7766951 original size:50 final size:49
Alignment explanation
Indices: 7766831--7766952 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 49
7766821 AGGAAAGCAT
* *
7766831 GCCCCCTGCACCGCGCTATATGCTGATTTGGCGCCACGTGGATATAGCGC
1 GCCCCCTG-ACCGCGCTATACGCTGATCTGGCGCCACGTGGATATAGCGC
* * * * *
7766881 GCCCCCTGCCTCGCGATATACGGTGATCTGGTGCCACATTGG-TATAGCGC
1 GCCCCCTGAC-CGCGCTATACGCTGATCTGGCGCCAC-GTGGATATAGCGC
7766931 GCCCCCTGATCCGCGCTATACG
1 GCCCCCTGA-CCGCGCTATACG
7766953 TCACGTAGGG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
49 1 0.02
50 55 0.92
51 4 0.07
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.22
Consensus pattern (49 bp):
GCCCCCTGACCGCGCTATACGCTGATCTGGCGCCACGTGGATATAGCGC
Found at i:7770629 original size:35 final size:34
Alignment explanation
Indices: 7770544--7770630 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
7770534 ATTTGATATT
*
7770544 TAAATACAACAAACTTACAATAAGAATTAAATAG
1 TAAATACAACAAAATTACAATAAGAATTAAATAG
* * *
7770578 TAAATGATAACCAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAA--GA-ATTAAATAG
7770616 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
7770631 ACTAAAATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.55
36 1 0.02
37 5 0.11
38 9 0.20
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.26
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGAATTAAATAG
Found at i:7770869 original size:12 final size:12
Alignment explanation
Indices: 7770854--7770896 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
7770844 TCATCATCAC
7770854 CGTCATCGTCGT
1 CGTCATCGTCGT
*
7770866 CGTCACCATCGTCAT
1 CGT---CATCGTCGT
7770881 CGTCATCGTCGT
1 CGTCATCGTCGT
7770893 CGTC
1 CGTC
7770897 CTGAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 15 0.58
15 11 0.42
ACGTcount: A:0.12, C:0.37, G:0.21, T:0.30
Consensus pattern (12 bp):
CGTCATCGTCGT
Found at i:7770877 original size:15 final size:15
Alignment explanation
Indices: 7770857--7770896 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7770847 TCATCACCGT
7770857 CATCGTCGTCGTCAC
1 CATCGTCGTCGTCAC
* *
7770872 CATCGTCATCGTCAT
1 CATCGTCGTCGTCAC
*
7770887 CGTCGTCGTC
1 CATCGTCGTC
7770897 CTGAGTAGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.12, C:0.38, G:0.20, T:0.30
Consensus pattern (15 bp):
CATCGTCGTCGTCAC
Found at i:7771256 original size:18 final size:18
Alignment explanation
Indices: 7771233--7771267 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7771223 GCGATGGCGG
7771233 CATCATATATGGTTGCGA
1 CATCATATATGGTTGCGA
7771251 CATCATATATGGTTGCG
1 CATCATATATGGTTGCG
7771268 GTGGCTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (18 bp):
CATCATATATGGTTGCGA
Found at i:7772905 original size:111 final size:111
Alignment explanation
Indices: 7772766--7772987 Score: 399
Period size: 111 Copynumber: 2.0 Consensus size: 111
7772756 ATTACAAAAA
* * * *
7772766 TTAATTCTTAATGTAATAGTCATGCATTAAATGAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
7772831 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
7772877 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
7772942 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
7772988 ATGATTTACA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:7774256 original size:33 final size:33
Alignment explanation
Indices: 7774213--7774279 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
7774203 ATAAAAGGGA
*
7774213 AATCAAAATTAAACGATTACAATATTCATTATT
1 AATCAAAATTAAACAATTACAATATTCATTATT
* *
7774246 AATCATAATTATACAATTACAATATTCATTATT
1 AATCAAAATTAAACAATTACAATATTCATTATT
7774279 A
1 A
7774280 TTTTTGAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (33 bp):
AATCAAAATTAAACAATTACAATATTCATTATT
Found at i:7775607 original size:53 final size:53
Alignment explanation
Indices: 7775547--7775651 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 53
7775537 AATCACGTTG
* * * * * *
7775547 TGTGCGTTCGATATCCAGGCTCTTCGTAGTCCTTCGAATATACCCCAAAGCTT
1 TGTGCGTTCGAAATCCAAGATATTCGCAGTCCCTCGAATATACCCCAAAGCTT
7775600 TGTGCGTTCGAAATCCAAGATATTCGCAGTCCCTCGAATATACCCCAAAGCT
1 TGTGCGTTCGAAATCCAAGATATTCGCAGTCCCTCGAATATACCCCAAAGCT
7775652 CTGCGTCAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (53 bp):
TGTGCGTTCGAAATCCAAGATATTCGCAGTCCCTCGAATATACCCCAAAGCTT
Found at i:7778277 original size:20 final size:21
Alignment explanation
Indices: 7778240--7778279 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7778230 CTATGAAACA
7778240 AAAAAGATAATAAAAAACATT
1 AAAAAGATAATAAAAAACATT
* *
7778261 AAAAATATAA-AATAAACAT
1 AAAAAGATAATAAAAAACAT
7778280 AAACATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (21 bp):
AAAAAGATAATAAAAAACATT
Found at i:7779524 original size:133 final size:133
Alignment explanation
Indices: 7779281--7779937 Score: 860
Period size: 133 Copynumber: 5.0 Consensus size: 133
7779271 TTGAAGATGT
* * * *
7779281 TGATCTAACTTCTTCTGCGATGGATTTGAGC---AA-ACAAATGTCGAT-C-CCTCCTTCCGTGA
1 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
* * * *
7779340 CGAAATCGAATGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTGG
66 TGGAATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTGA
7779405 CGC
131 CGC
* **
7779408 TAATCTGACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
1 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
* * *
7779473 TGGAATTGAACGAGATGTCAGTGCTAATCTACCTCCTTCTGTGATAGAATCGAGCTAAAAGTTGA
66 TGGAATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTGA
7779538 CGC
131 CGC
* * * * *
7779541 TGATCCAACTCATTCTACTATGAATTTGAGCGAAAATAAAAATGTTGATCCACCTCCTTCTGTGA
1 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
* * *
7779606 TGGAATCGAACGAGATGTCGGTGCTGATCTACCTCCTTCTGTGATAGAATCAAGCTAAAAGTTGA
66 TGGAATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTGA
*
7779671 CGT
131 CGC
* * * * ** * * *
7779674 TGATCCAACTCCTTCTGTGATAGATTTGAGCAAAAATAAAAATGTTGATCCATATCATTTTGTGG
1 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
* * *
7779739 TGGAATCGAACGAGATGTC-GATGCTGATCTACCTCATTCTGTGATAGATTCTAGCAAAAAGTTG
66 TGGAATCGAACGAGATGTCAG-TGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTG
*
7779803 ACGT
130 ACGC
* * * *
7779807 TGATCCAACTCCTTCTACGATGGATTTGAGTGAGAATAAAAATGTCGATCCACTTCCTTCTGTGA
1 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
* * *
7779872 TGGAAATCGAACGAGATATCGGTGTTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTG
66 TGG-AATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTG
7779937 A
130 A
7779938 ACAAGTTCTT
Statistics
Matches: 463, Mismatches: 58, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
127 28 0.06
130 2 0.00
131 11 0.02
132 2 0.00
133 364 0.79
134 55 0.12
135 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (133 bp):
TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCACCTCCTTCTGTGA
TGGAATCGAACGAGATGTCAGTGCTGATCTACCTCATTCTGTGATAGAATCGAGCTAAAAGTTGA
CGC
Found at i:7779678 original size:44 final size:44
Alignment explanation
Indices: 7779503--7779697 Score: 128
Period size: 44 Copynumber: 4.4 Consensus size: 44
7779493 GTGCTAATCT
* *
7779503 ACCTCCTTCTGTGATAGAATCGAGCTAAAAGTTGACGCTGATCC
1 ACCTCCTTCTGTGATAGAATCAAGCGAAAAGTTGACGCTGATCC
* * * ** ** * *
7779547 AACTCATTCTACT-AT-GAATTTGAGCGAAAA-TAAAAATGTTGATCC
1 ACCTCCTTCT-GTGATAGAA-TCAAGCGAAAAGT--TGACGCTGATCC
* * * * ** *
7779592 ACCTCCTTCTGTGATGGAATCGAA-CGAGATGTCGGTGCTGATCT
1 ACCTCCTTCTGTGATAGAATC-AAGCGAAAAGTTGACGCTGATCC
* *
7779636 ACCTCCTTCTGTGATAGAATCAAGCTAAAAGTTGACGTTGATCC
1 ACCTCCTTCTGTGATAGAATCAAGCGAAAAGTTGACGCTGATCC
*
7779680 AACTCCTTCTGTGATAGA
1 ACCTCCTTCTGTGATAGA
7779698 TTTGAGCAAA
Statistics
Matches: 111, Mismatches: 31, Indels: 18
0.69 0.19 0.11
Matches are distributed among these distances:
43 6 0.05
44 76 0.68
45 24 0.22
46 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
ACCTCCTTCTGTGATAGAATCAAGCGAAAAGTTGACGCTGATCC
Found at i:7780076 original size:22 final size:22
Alignment explanation
Indices: 7780051--7780116 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
7780041 TATGAACTTA
7780051 TTCTCCCTTGTTGGATGAGTTC
1 TTCTCCCTTGTTGGATGAGTTC
* * *
7780073 TTCT-CATT-AT-GA--ACTT-
1 TTCTCCCTTGTTGGATGAGTTC
7780089 TCTCTCCCTTGTTGGATGAGTTC
1 T-TCTCCCTTGTTGGATGAGTTC
7780112 TTCTC
1 TTCTC
7780117 ATTATGAACT
Statistics
Matches: 31, Mismatches: 6, Indels: 14
0.61 0.12 0.27
Matches are distributed among these distances:
16 1 0.03
17 6 0.19
18 3 0.10
19 3 0.10
20 3 0.10
21 3 0.10
22 11 0.35
23 1 0.03
ACGTcount: A:0.12, C:0.24, G:0.17, T:0.47
Consensus pattern (22 bp):
TTCTCCCTTGTTGGATGAGTTC
Found at i:7780083 original size:39 final size:39
Alignment explanation
Indices: 7780029--7780126 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
7780019 AGATTGAATA
7780029 AGTTCTTCTCATTATGAACTTAT-TCTCCCTTGTTGGATG
1 AGTTCTTCTCATTATGAACTT-TCTCTCCCTTGTTGGATG
7780068 AGTTCTTCTCATTATGAACTTTCTCTCCCTTGTTGGATG
1 AGTTCTTCTCATTATGAACTTTCTCTCCCTTGTTGGATG
7780107 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
7780127 CTCCACTGGA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
38 1 0.02
39 57 0.98
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (39 bp):
AGTTCTTCTCATTATGAACTTTCTCTCCCTTGTTGGATG
Found at i:7780171 original size:91 final size:91
Alignment explanation
Indices: 7780068--7780471 Score: 647
Period size: 91 Copynumber: 4.5 Consensus size: 91
7780058 TTGTTGGATG
*
7780068 AGTTCTTCTCATTATGAACTT-TCTCTCCCTTGTTGGATGAGTTCTTCTCATTATGAACTCTCCA
1 AGTTCTTCTCATTATGAACTTCT-TCTCCCTCGTTGGATGAGTTCTTCTCATTATGAACTCTCCA
** *
7780132 CTGGAAATGC-TGGGCCAAGGTTGAATA
65 CTGGAAAT-CTTGAACCAAGGTTGAACA
*
7780159 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATAAACTCTCCAC
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAACTCTCCAC
* *
7780224 TGAAAATCTTGAATCAAGGTTGAACA
66 TGGAAATCTTGAACCAAGGTTGAACA
* * *
7780250 AGTTCTTCTCGTTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATCAACTATCCAC
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAACTCTCCAC
*
7780315 TGGAAATCTTGAACCAAGGTTGAAGA
66 TGGAAATCTTGAACCAAGGTTGAACA
*
7780341 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGACGAGTTCTTCTCATTATGAACTCTCCAC
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAACTCTCCAC
7780406 TGGAAATCTTGAACCAAGGTTGAACA
66 TGGAAATCTTGAACCAAGGTTGAACA
7780432 AGTTCTTCTCATTATGAA---CTTCTCCCTCGTTGGATGAGTT
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTT
7780472 ATGAACTCTC
Statistics
Matches: 292, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
88 21 0.07
90 1 0.00
91 269 0.92
92 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (91 bp):
AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAACTCTCCAC
TGGAAATCTTGAACCAAGGTTGAACA
Found at i:7780171 original size:130 final size:128
Alignment explanation
Indices: 7779941--7780217 Score: 416
Period size: 130 Copynumber: 2.2 Consensus size: 128
7779931 AAGTTGAACA
*
7779941 AGTTCTTCTCATTATGAAC-TTCTTCTCCCTCGTTTGATGAGTTCTCATTATGAACTCTCCACTA
1 AGTTCTTCTCATTATGAACTTTCTTCTCCCTCGTTGGATGAGTTCTCATTATGAACTCTCCACTA
*
7780005 GAAATCTTGAACCAAGATTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTTGTTGGATG
66 GAAATCTTGAACCAAGATTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCGTTGGATG
*
7780068 AGTTCTTCTCATTATGAACTTTC-TCTCCCTTGTTGGATGAGTTCTTCTCATTATGAACTCTCCA
1 AGTTCTTCTCATTATGAACTTTCTTCTCCCTCGTTGGATGAG---TTCTCATTATGAACTCTCCA
* ** * *
7780132 CTGGAAATGC-TGGGCCAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGA
63 CTAGAAAT-CTTGAACCAAGATTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCGTTGGA
7780196 TG
127 TG
*
7780198 AGTTCTTCTCATTATAAACT
1 AGTTCTTCTCATTATGAACT
7780218 CTCCACTGAA
Statistics
Matches: 136, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
127 35 0.26
128 3 0.02
130 97 0.71
131 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (128 bp):
AGTTCTTCTCATTATGAACTTTCTTCTCCCTCGTTGGATGAGTTCTCATTATGAACTCTCCACTA
GAAATCTTGAACCAAGATTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCGTTGGATG
Found at i:7780833 original size:66 final size:66
Alignment explanation
Indices: 7780733--7780923 Score: 228
Period size: 66 Copynumber: 2.9 Consensus size: 66
7780723 AAAAGAAATT
* * * * *
7780733 TGTTTGAAGAGAAACTATCTCAAGTGAGATAAAATTTATTTCGAGGGGAACA-GAT-TCAAAGA-
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTC-AAGGGAA-ATGATCTCAAAGAT
7780795 TTG
64 TTG
* * *
7780798 ATGTTTTAAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTCAAGGGAAATGATCTCAAAGATT
1 -TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAATGATCTCAAAGATT
7780863 TG
65 TG
* *
7780865 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAATGGAAACTG-TCTCAA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAA-TGATCTCAA
7780924 GAGAGACAAA
Statistics
Matches: 109, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
64 1 0.01
65 9 0.08
66 94 0.86
67 5 0.05
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (66 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAATGATCTCAAAGATTT
G
Done.