Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 49
Found at i:7780856 original size:36 final size:36
Alignment explanation
Indices: 7780805--7781176 Score: 157
Period size: 36 Copynumber: 10.2 Consensus size: 36
7780795 TTGATGTTTT
7780805 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* **
7780841 AAGGGAAA-TGATCTCAA---AG----ATTTGTGTTTC
1 AAGGGAAACTG-TCTCAAGGGAGACAAAATT-CATTTC
* **
7780871 AAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* *
7780907 AATGGAAACTGTCTCAAGAGAGACAAAATTCATTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* * **
7780943 AAGGGAAA-TAATCTCAA---AG----ATTTGTGTTTC
1 AAGGGAAACT-GTCTCAAGGGAGACAAAATT-CATTTC
* * * **
7780973 AAGAGAAACTGTCTCAAAGGAGAAAAAATTTGTTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* * * **
7781009 AAGTGAAGCTGTCTCAAGAGAGACAAAATTTGTTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* * **
7781045 AAGGGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTTGTGTTTC
1 AA-GG-G---AAACT-GTCTCAAGGG--A-GA---CAAA-A-TT-CATTTC
* * **
7781096 AAGAGAAACTTTCTCAAGGGAGACAAAATTTGTTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
* *
7781132 AAGGGAAACTGTCTCAAGAGAGA-AAATATTTATTTC
1 AAGGGAAACTGTCTCAAGGGAGACAAA-ATTCATTTC
7781168 AAGGGAAAC
1 AAGGGAAAC
7781177 GTTTTCAAAG
Statistics
Matches: 264, Mismatches: 36, Indels: 72
0.71 0.10 0.19
Matches are distributed among these distances:
29 6 0.02
30 34 0.13
31 3 0.01
33 8 0.03
35 6 0.02
36 146 0.55
37 9 0.03
38 2 0.01
39 4 0.02
41 3 0.01
42 10 0.04
43 1 0.00
44 1 0.00
45 10 0.04
46 4 0.02
48 4 0.02
49 2 0.01
50 3 0.01
51 8 0.03
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (36 bp):
AAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTC
Found at i:7780933 original size:102 final size:101
Alignment explanation
Indices: 7780799--7781050 Score: 405
Period size: 102 Copynumber: 2.5 Consensus size: 101
7780789 CAAAGATTGA
* * *
7780799 TGTTTTAAGGGAAACTGTCTCAAGGGAGACAAAATTCATTTCAAGGGAAATGATCTCAAAGATTT
1 TGTTTCAA-GGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAATAATCTCAAAGATTT
* *
7780864 GTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
65 GTGTTTCAAGAGAAACTGTCTCAAAGGAGAAAAAATT
7780901 TGTTTCAATGGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAATAATCTCAAAGATTT
1 TGTTTCAA-GGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAATAATCTCAAAGATTT
7780966 GTGTTTCAAGAGAAACTGTCTCAAAGGAGAAAAAATT
65 GTGTTTCAAGAGAAACTGTCTCAAAGGAGAAAAAATT
* **
7781003 TGTTTCAAGTGAAGCTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGA
1 TGTTTCAAG-GAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGA
7781051 GACAAAATTC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
101 1 0.01
102 139 0.99
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (101 bp):
TGTTTCAAGGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAATAATCTCAAAGATTTG
TGTTTCAAGAGAAACTGTCTCAAAGGAGAAAAAATT
Found at i:7781052 original size:21 final size:21
Alignment explanation
Indices: 7781022--7781071 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
7781012 TGAAGCTGTC
* *
7781022 TCAAGAGAGACAAAATTTGTT
1 TCAAGGGAGACAAAATTCGTT
7781043 TCAAGGGAGACAAAATTCGTT
1 TCAAGGGAGACAAAATTCGTT
7781064 TCAAGGGA
1 TCAAGGGA
7781072 AACGATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (21 bp):
TCAAGGGAGACAAAATTCGTT
Found at i:7781103 original size:123 final size:123
Alignment explanation
Indices: 7780920--7781173 Score: 402
Period size: 123 Copynumber: 2.1 Consensus size: 123
7780910 GGAAACTGTC
* *
7780920 TCAAGAGAGACAAAATTCATTTCAAGGGAAATAATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
1 TCAAGGGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
* * *
7780985 CTCAAAGGAGAAAAAATTTGTTTCAAGTGAAGCTGTCTCAAGAGAGACAAA-ATTTGTT
66 CTCAAAGGAGAAAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGA-AAATATTTATT
* * *
7781043 TCAAGGGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTTT
1 TCAAGGGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
* *
7781108 CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTTATT
66 CTCAAAGGAGAAAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTTATT
7781166 TCAAGGGA
1 TCAAGGGA
7781174 AACGTTTTCA
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
122 3 0.03
123 117 0.98
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (123 bp):
TCAAGGGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
CTCAAAGGAGAAAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTTATT
Found at i:7781113 original size:225 final size:225
Alignment explanation
Indices: 7780818--7781261 Score: 694
Period size: 225 Copynumber: 2.0 Consensus size: 225
7780808 GGAAACTGTC
*
7780818 TCAAGGGAGACAAAATTCATTTCAAGGGAAATGATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
1 TCAAGGGAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
*
7780883 CTCAAGGGAGACAAAATTTGTTTCAATGGAAACTGTCTCAAGAGAGACAAA-ATTCATTTCAAGG
66 CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGA-AAATATTCATTTCAAGG
* *
7780947 GAAATAATCTCAAAGATTTGTGTTTCAAGAGAAACTGTCTCAAAGGAGA-AAAAATTTGTTTCAA
130 GAAACAATCTCAAAG-TTTATGTTTCAAGAGAAACTGTCTCAAAGGAGACAAAAATTTGTTTCAA
* * *
7781011 GTGAAGCTGTCTCAAGAGAGACAAAATTTGTT
194 GAGAAACTATCTCAAGAGAGACAAAATTTGTT
* *
7781043 TCAAGGGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTTT
1 TCAAGGGAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
*
7781108 CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTTATTTCAAGGG
66 CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTCATTTCAAGGG
** * * * *
7781173 AAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTTAAGA
131 AAACAATCTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAAGGAGACAAAAATTTGTTTCAAGA
* *
7781238 GAAATTATCTCAAGGGAGACAAAA
196 GAAACTATCTCAAGAGAGACAAAA
7781262 CTTTCTGTTT
Statistics
Matches: 199, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
224 34 0.17
225 165 0.83
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.28
Consensus pattern (225 bp):
TCAAGGGAGACAAAATTCATTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTGT
CTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTCATTTCAAGGG
AAACAATCTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAAGGAGACAAAAATTTGTTTCAAGA
GAAACTATCTCAAGAGAGACAAAATTTGTT
Found at i:7781219 original size:101 final size:103
Alignment explanation
Indices: 7781062--7781256 Score: 295
Period size: 102 Copynumber: 1.9 Consensus size: 103
7781052 ACAAAATTCG
* *
7781062 TTTCAAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTTTCTCAAGGGAGACAAAA-TT
1 TTTCAAGGGAAACGATCTCAAAGATTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* *
7781126 TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAATATTTA
66 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAATATTTA
* *
7781164 TTTCAAGGGAAACGTTTTCAAAG-TTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TTTCAAGGGAAACGATCTCAAAGATTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* * *
7781228 TGTTTTAAGAGAAATTATCTCAAGGGAGA
66 TGTTTCAAGAGAAACTATCTCAAGAGAGA
7781257 CAAAACTTTC
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 36 0.43
102 47 0.57
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (103 bp):
TTTCAAGGGAAACGATCTCAAAGATTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
TGTTTCAAGAGAAACTATCTCAAGAGAGAAAATATTTA
Found at i:7781418 original size:39 final size:39
Alignment explanation
Indices: 7781191--7781421 Score: 279
Period size: 39 Copynumber: 6.0 Consensus size: 39
7781181 TCAAAGTTTA
* * * * *
7781191 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA--TTT
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
** * * * *
7781228 TGTTTTAAGAGAAATTATCTCAAGGGAGACAAAA-CTTT
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
* * *
7781266 CTGTTTTGAGGTAAACTATCTCAAGTGAGATAAAATCTTT
1 -TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
*
7781306 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
7781345 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
* *
7781384 TGTTTCGAGGGAAACTATATCAAGTGAGATAAAATCTT
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT
7781422 CTTTAAAACA
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
37 31 0.18
38 3 0.02
39 137 0.78
40 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (39 bp):
TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
Found at i:7781581 original size:36 final size:36
Alignment explanation
Indices: 7781452--7781581 Score: 98
Period size: 38 Copynumber: 3.5 Consensus size: 36
7781442 AAATAAATCT
*
7781452 TCTTGTTTCAAGTAAAAAGCTGTCTCAAGCGAGACAAA
1 TCTTGTTTCAAG-AAAAA-CTGTCTCAAGTGAGACAAA
* ** ** * * * *
7781490 TCTTGTTTTAAGAAAAACCATCTTGAGTCAAAGGAATG
1 TCTTGTTTCAAGAAAAACTGTCTCAAGTGAGA-CAA-A
* * *
7781528 TCTTCTTTCGAGTAAAACTGTCTCAAGTGAGACAAA
1 TCTTGTTTCAAGAAAAACTGTCTCAAGTGAGACAAA
*
7781564 TCTTGTTTTAAGAAAAAC
1 TCTTGTTTCAAGAAAAAC
7781582 AATCTTGAGT
Statistics
Matches: 64, Mismatches: 26, Indels: 6
0.67 0.27 0.06
Matches are distributed among these distances:
36 22 0.34
37 9 0.14
38 33 0.52
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (36 bp):
TCTTGTTTCAAGAAAAACTGTCTCAAGTGAGACAAA
Found at i:7781593 original size:36 final size:36
Alignment explanation
Indices: 7781426--7781603 Score: 95
Period size: 36 Copynumber: 4.8 Consensus size: 36
7781416 AATCTTCTTT
* *
7781426 AAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCAAGTA
1 AAAACAATCTTGAGTGAAACAAA---TCTTGTTTTAAG-A
** ** * *
7781466 AAAAGCTGTCTCAAGCGAGACAAATCTTGTTTTAAGA
1 AAAA-CAATCTTGAGTGAAACAAATCTTGTTTTAAGA
* * * * * ** *
7781503 AAAACCATCTTGAGTCAAAGGAATGTCTTCTTTCGAGT
1 AAAACAATCTTGAGTGAAA-CAA-ATCTTGTTTTAAGA
** ** *
7781541 AAAACTGTCTCAAGTGAGACAAATCTTGTTTTAAGA
1 AAAACAATCTTGAGTGAAACAAATCTTGTTTTAAGA
*
7781577 AAAACAATCTTGAGTGAAATAAATCTT
1 AAAACAATCTTGAGTGAAACAAATCTT
7781604 CTGTACTCGA
Statistics
Matches: 96, Mismatches: 39, Indels: 10
0.66 0.27 0.07
Matches are distributed among these distances:
36 38 0.40
37 9 0.09
38 33 0.34
40 4 0.04
41 12 0.12
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (36 bp):
AAAACAATCTTGAGTGAAACAAATCTTGTTTTAAGA
Found at i:7781624 original size:74 final size:73
Alignment explanation
Indices: 7781426--7781646 Score: 241
Period size: 74 Copynumber: 2.9 Consensus size: 73
7781416 AATCTTCTTT
* *
7781426 AAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCAAGTAAAAAGCTGTCTCAAGCGAGACAAAT
1 AAAACAATCTTGAGTGAAATAAATCTTC-TG-TTCGA-TGAAAA-CTGTCTCAAGCGAGACAAAT
7781491 CTTGTTTTAAGA
62 CTTGTTTTAAGA
* * * * *
7781503 AAAACCATCTTGAGTCAAAGGAATGTCTTCT-TTCGA-GTAAAACTGTCTCAAGTGAGACAAATC
1 AAAACAATCTTGAGTGAAA-TAA-ATCTTCTGTTCGATG-AAAACTGTCTCAAGCGAGACAAATC
7781566 TTGTTTTAAGA
63 TTGTTTTAAGA
* * *
7781577 AAAACAATCTTGAGTGAAATAAATCTTCTGTACTCGATGAGAA-TGTCTAAAGCGAGACAAAATT
1 AAAACAATCTTGAGTGAAATAAATCTTCTGT--TCGATGAAAACTGTCTCAAGCGAGAC-AAATC
7781641 TTGTTT
63 TTGTTT
7781647 GGAAAACTGT
Statistics
Matches: 121, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
72 6 0.05
73 3 0.02
74 61 0.50
75 21 0.17
76 5 0.04
77 17 0.14
78 3 0.02
79 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (73 bp):
AAAACAATCTTGAGTGAAATAAATCTTCTGTTCGATGAAAACTGTCTCAAGCGAGACAAATCTTG
TTTTAAGA
Found at i:7781699 original size:37 final size:35
Alignment explanation
Indices: 7781620--7781742 Score: 142
Period size: 37 Copynumber: 3.4 Consensus size: 35
7781610 TCGATGAGAA
*
7781620 TGTCTAAAGCGAGACAAAATT-TTGTTT-GGAAAAC
1 TGTCTCAAGCGAGACAAAATTGTT-TTTAGGAAAAC
*
7781654 TGTTTCAAGCGAGACAAAACTTGTTTTTAGCGAAAAC
1 TGTCTCAAGCGAGACAAAA-TTGTTTTTAG-GAAAAC
* *
7781691 TGTCTCAAGCGAGACAAAATTTGATTTTAAGAAAAC
1 TGTCTCAAGCGAGACAAAA-TTGTTTTTAGGAAAAC
*
7781727 TTGTCTCGAGCGAGAC
1 -TGTCTCAAGCGAGAC
7781743 GAGCCTTTGT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
34 17 0.22
35 5 0.06
36 9 0.12
37 46 0.60
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (35 bp):
TGTCTCAAGCGAGACAAAATTGTTTTTAGGAAAAC
Found at i:7785826 original size:17 final size:17
Alignment explanation
Indices: 7785806--7785839 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7785796 AAGGATGTCG
7785806 ACTTATTTAGGAAATTA
1 ACTTATTTAGGAAATTA
7785823 ACTTATTTAGGAAATTA
1 ACTTATTTAGGAAATTA
7785840 CCAGTAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
ACTTATTTAGGAAATTA
Found at i:7788510 original size:23 final size:23
Alignment explanation
Indices: 7788463--7788527 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
7788453 CACATATTTA
7788463 TCCCGAAGGACCACATAAGTTTTG
1 TCCCGAAGGACCACAT-AGTTTTG
*
7788487 TCCCGAATGACCACATAGTTTTG
1 TCCCGAAGGACCACATAGTTTTG
7788510 TCCCGAAGGACCACATAG
1 TCCCGAAGGACCACATAG
7788528 AACCCTCGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 24 0.62
24 15 0.38
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (23 bp):
TCCCGAAGGACCACATAGTTTTG
Found at i:7789304 original size:20 final size:19
Alignment explanation
Indices: 7789279--7789365 Score: 67
Period size: 20 Copynumber: 4.6 Consensus size: 19
7789269 TCTTATATGA
7789279 TATCGATATCTTCACATCAG
1 TATCGATA-CTTCACATCAG
7789299 TATCGATACTT---A-CAG
1 TATCGATACTTCACATCAG
* * **
7789314 TAACGATACCTT-ATCCTTGG
1 TATCGATA-CTTCA-CATCAG
7789334 TATCGATATCTTCACATCAG
1 TATCGATA-CTTCACATCAG
7789354 TATCGATACTTC
1 TATCGATACTTC
7789366 TTCAACTAGT
Statistics
Matches: 52, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
15 10 0.19
16 4 0.08
19 7 0.13
20 30 0.58
21 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (19 bp):
TATCGATACTTCACATCAG
Found at i:7793112 original size:17 final size:17
Alignment explanation
Indices: 7793090--7793123 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7793080 GTCATTTAAT
7793090 CTCTTGGTCGTTAGTTC
1 CTCTTGGTCGTTAGTTC
7793107 CTCTTGGTCGTTAGTTC
1 CTCTTGGTCGTTAGTTC
7793124 ACCATTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.24, G:0.24, T:0.47
Consensus pattern (17 bp):
CTCTTGGTCGTTAGTTC
Found at i:7794957 original size:20 final size:20
Alignment explanation
Indices: 7794906--7794957 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
7794896 TGAACATCAC
*
7794906 CAATTGGAACAAGTTAAATG
1 CAATTGGAACATGTTAAATG
7794926 CAATTGGAACATGTTAAATG
1 CAATTGGAACATGTTAAATG
*
7794946 CAATTGTAACAT
1 CAATTGGAACAT
7794958 CCATTCATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (20 bp):
CAATTGGAACATGTTAAATG
Found at i:7797421 original size:48 final size:48
Alignment explanation
Indices: 7797345--7797449 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 48
7797335 CATACTTTGT
* *
7797345 GTATAATGGTTATCGATCGCTTTTGTTTAATGCATAAGTTGCATTTTC
1 GTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTGCATTTTC
*
7797393 GTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTGTATTTTC
1 GTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTGCATTTTC
7797441 GTATGATGG
1 GTATGATGG
7797450 GCACTATGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.46
Consensus pattern (48 bp):
GTATGATGGTTATCGATCGATTTTGTTTAATGCATAAGTTGCATTTTC
Found at i:7799018 original size:20 final size:20
Alignment explanation
Indices: 7798990--7799040 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
7798980 AATGGATGGA
*
7798990 TGTTACAATTGCATTTAACT
1 TGTTCCAATTGCATTTAACT
7799010 TGTTCCAATTGCATTTAACT
1 TGTTCCAATTGCATTTAACT
7799030 TGTTCCAATTG
1 TGTTCCAATTG
7799041 GTGGTGTCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.45
Consensus pattern (20 bp):
TGTTCCAATTGCATTTAACT
Found at i:7814369 original size:14 final size:14
Alignment explanation
Indices: 7814337--7814390 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
7814327 CATTGACAAG
* *
7814337 AATTATTTTATGATC
1 AATTATTTAAT-ATA
*
7814352 AATTATTTACTATA
1 AATTATTTAATATA
*
7814366 AATTATTTAAATATC
1 AATTATTT-AATATA
7814381 AATTATTTAA
1 AATTATTTAA
7814391 ATACTAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
14 12 0.36
15 21 0.64
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.50
Consensus pattern (14 bp):
AATTATTTAATATA
Found at i:7814389 original size:15 final size:15
Alignment explanation
Indices: 7814349--7814406 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
7814339 TTATTTTATG
*
7814349 ATCAATTATTT-ACT
1 ATCAATTATTTAAAT
*
7814363 ATAAATTATTTAAAT
1 ATCAATTATTTAAAT
7814378 ATCAATTATTTAAAT
1 ATCAATTATTTAAAT
*
7814393 A-CTAATTATGTAAA
1 ATC-AATTATTTAAA
7814407 CACTAATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
14 11 0.29
15 27 0.71
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.45
Consensus pattern (15 bp):
ATCAATTATTTAAAT
Found at i:7814411 original size:15 final size:15
Alignment explanation
Indices: 7814381--7814416 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7814371 TTTAAATATC
* *
7814381 AATTATTTAAATACT
1 AATTATGTAAACACT
7814396 AATTATGTAAACACT
1 AATTATGTAAACACT
7814411 AATTAT
1 AATTAT
7814417 TCAAATGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (15 bp):
AATTATGTAAACACT
Found at i:7814794 original size:42 final size:41
Alignment explanation
Indices: 7814712--7814803 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 41
7814702 CTCAAAATTT
* * **
7814712 CGTGTTTGTTTCATGTAATTCGTTTTCTAGAAAATGTTTTC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCAGAAAACATTTTC
7814753 ACGTGTTTGTTTCACGTAATTCGTTTTCCAGAAAACATTTTC
1 -CGTGTTTGTTTCACGTAATTCGTTTTCCAGAAAACATTTTC
7814795 CAGTGTTTG
1 C-GTGTTTG
7814804 GTTGGAGGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (41 bp):
CGTGTTTGTTTCACGTAATTCGTTTTCCAGAAAACATTTTC
Found at i:7815063 original size:26 final size:24
Alignment explanation
Indices: 7815001--7815063 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
7814991 CATTTTCATC
7815001 AAAATAT-TAATTATTAACATATTT
1 AAAATATAT-ATTATTAACATATTT
*
7815025 AAAATATAT-TTATTAATAT-TTCT
1 AAAATATATATTATTAACATATT-T
7815048 AATAATATAATATTAT
1 AA-AATAT-ATATTAT
7815064 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 2 0.06
23 12 0.36
24 12 0.36
25 3 0.09
26 4 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
AAAATATATATTATTAACATATTT
Found at i:7815065 original size:22 final size:23
Alignment explanation
Indices: 7815035--7815081 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
7815025 AAAATATATT
7815035 TATTAATATTTCTAATAATATAA
1 TATTAATATTTCTAATAATATAA
* *
7815058 TATT-ATATTTTTAATATTATAA
1 TATTAATATTTCTAATAATATAA
7815080 TA
1 TA
7815082 AAATAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAATATTTCTAATAATATAA
Found at i:7815095 original size:32 final size:32
Alignment explanation
Indices: 7815029--7815108 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
7815019 ATATTTAAAA
* *
7815029 TATATTTATTAATATTTCTAATAATATAATAT
1 TATATTTATTAATATTTATAATAAAATAATAT
7815061 TATATTT-TTAATA-TTATAATAAAATAATCAAT
1 TATATTTATTAATATTTATAATAAAATAAT--AT
*
7815093 TATATTATAATAATAT
1 TATATT-TATTAATAT
7815109 AAGATATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
30 13 0.32
31 6 0.15
32 15 0.38
33 1 0.03
34 5 0.12
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAAAATAATAT
Found at i:7815160 original size:32 final size:31
Alignment explanation
Indices: 7815099--7815210 Score: 101
Period size: 28 Copynumber: 3.7 Consensus size: 31
7815089 CAATTATATT
*
7815099 ATAATAATATAAGATATTATATTTT-TAT-TTTA
1 ATAATAATATAATA-ATT-T-TTTTATATATTTA
7815131 ATAA-ATATATAATAATTTTTTTATATATTTA
1 ATAATA-ATATAATAATTTTTTTATATATTTA
* *
7815162 ATAATGA-ATAAT-A-TTATTTATATATTTA
1 ATAATAATATAATAATTTTTTTATATATTTA
* *
7815190 ATATTAATATAATAATATTTT
1 ATAATAATATAATAATTTTTT
7815211 AATAAAGATA
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
28 19 0.29
29 10 0.15
30 10 0.15
31 16 0.24
32 11 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (31 bp):
ATAATAATATAATAATTTTTTTATATATTTA
Found at i:7815229 original size:23 final size:23
Alignment explanation
Indices: 7815210--7815254 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7815200 AATAATATTT
7815210 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
7815233 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
7815255 ATATAAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:7815405 original size:20 final size:20
Alignment explanation
Indices: 7815347--7815412 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
7815337 TATTAATAAA
7815347 ATTATAAAAATAATATTTAAT
1 ATTA-AAAAATAATATTTAAT
* *
7815368 AATAAATAAATTAT-TTTAAT
1 ATTAAA-AAATAATATTTAAT
**
7815388 ATTTTAAAATAATATTTAAT
1 ATTAAAAAATAATATTTAAT
7815408 ATTAA
1 ATTAA
7815413 TATTAATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
19 6 0.17
20 20 0.57
21 9 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAAAAATAATATTTAAT
Found at i:7815643 original size:15 final size:15
Alignment explanation
Indices: 7815607--7815662 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
7815597 TTCCATAAAT
7815607 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
7815622 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
7815636 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
*
7815651 GTAATTCGTTTT
1 GTAATTCATTTT
7815663 TCATAAATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 12 0.34
15 23 0.66
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.45
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:7816173 original size:16 final size:13
Alignment explanation
Indices: 7816139--7816167 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7816129 AATTAATTTT
7816139 TCAATTTTTTTAA
1 TCAATTTTTTTAA
7816152 TCAATTTTTTTAA
1 TCAATTTTTTTAA
7816165 TCA
1 TCA
7816168 TTAATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (13 bp):
TCAATTTTTTTAA
Found at i:7816827 original size:20 final size:21
Alignment explanation
Indices: 7816802--7816853 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7816792 TTTTCCCAAT
*
7816802 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
7816822 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
7816843 TCGCAATGCGA
1 TCGCAATGCGA
7816854 TACTGATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:7816870 original size:20 final size:20
Alignment explanation
Indices: 7816842--7816955 Score: 86
Period size: 20 Copynumber: 5.7 Consensus size: 20
7816832 AATTGGGAAA
*
7816842 ATCGCAATGCGATACTGATT
1 ATCGCAATGCGATACTGACT
* *
7816862 ATTGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
7816882 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
7816903 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * **
7816923 TTCGCAACGCGATTTTGACT
1 ATCGCAATGCGATACTGACT
* *
7816943 TTCGCAACGCGAT
1 ATCGCAATGCGAT
7816956 TTACATAGCG
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
19 2 0.03
20 60 0.78
21 13 0.17
22 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:7816948 original size:61 final size:61
Alignment explanation
Indices: 7816839--7816955 Score: 139
Period size: 61 Copynumber: 1.9 Consensus size: 61
7816829 GCGAATTGGG
* * * * *
7816839 AAAATCGCAATGCGATACTGATTATTGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGATTATCGCAACGCGATACTTACTATCGCAACGCGATAATAC
* *
7816900 AAAATCGCAACGAGATACTGACTT-TCGCAACGCGAT-TTTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGA-TTATCGCAACGCGATACTT-ACTATCGCAACGCGAT
7816956 TTACATAGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
60 2 0.04
61 43 0.91
62 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGATTATCGCAACGCGATACTTACTATCGCAACGCGATAATAC
Found at i:7817554 original size:19 final size:19
Alignment explanation
Indices: 7817532--7817710 Score: 145
Period size: 19 Copynumber: 10.1 Consensus size: 19
7817522 GAAACCAAAA
*
7817532 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7817551 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7817565 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7817584 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7817603 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
7817617 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
7817636 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
7817650 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
7817669 TCTGCGTTGCGATTCTCATT
1 TC-GCGTTGCGATTTTCATT
*
7817689 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
7817709 TC
1 TC
7817711 AACCAAAAGA
Statistics
Matches: 129, Mismatches: 14, Indels: 34
0.73 0.08 0.19
Matches are distributed among these distances:
14 30 0.23
16 7 0.05
17 8 0.06
19 53 0.41
20 29 0.22
21 2 0.02
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7817615 original size:52 final size:52
Alignment explanation
Indices: 7817532--7817710 Score: 213
Period size: 52 Copynumber: 3.4 Consensus size: 52
7817522 GAAACCAAAA
* *
7817532 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTCTCATT
**
7817584 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTCTCATT
* *
7817636 TCGCGTTGCGATTCTCTC-GTT-GCGATAGTC-ATT-TCTGCGTTGCGATTCTCATT
1 TCGCGTTGCGATT-T-TCATTTCGCG-TTG-CGATTCTCT-CGTTGCGATTCTCATT
*
7817689 ATCTCGTTGCGATTTTCATTTC
1 -TCGCGTTGCGATTTTCATTTC
7817711 AACCAAAAGA
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
52 70 0.64
53 25 0.23
54 15 0.14
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (52 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTCTCATT
Found at i:7817624 original size:33 final size:33
Alignment explanation
Indices: 7817587--7817685 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
7817577 TTTCATTTCG
**
7817587 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
7817620 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
7817653 CGTTGCGATAGTCATTTCTGCGTTGCGATTCTC
1 CGTTGCGATAGTCATTTC-GCGTTGCGATTCTC
7817686 ATTATCTCGT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 49 0.78
34 14 0.22
ACGTcount: A:0.11, C:0.24, G:0.23, T:0.41
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
Found at i:7817625 original size:14 final size:14
Alignment explanation
Indices: 7817606--7817661 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
7817596 TTTCATTTCG
7817606 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7817620 CGTTGCGATAGTCATTTCG
1 CGTTGCGAT--TC---TCT
7817639 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7817653 CGTTGCGAT
1 CGTTGCGAT
7817662 AGTCATTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 20 0.57
16 2 0.06
17 2 0.06
19 11 0.31
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7819879 original size:42 final size:41
Alignment explanation
Indices: 7819803--7820005 Score: 192
Period size: 42 Copynumber: 4.8 Consensus size: 41
7819793 GACTCGCCTG
* * * * * *
7819803 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCC-CTCCCACCGTTCAAGAGGCCACTA
*
7819845 TCATTCCTCGAGAGTCCCTTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCC-TCCCACCGTTCAAGAGGCCACTA
* * * * * *
7819887 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCC-CTCCCACCGTTCAAGAGGCCACTA
*
7819929 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGT-CCCTCCCACCGTTCAAGAGGCCACTA
* * *
7819971 TCA-TCGTTGAAGAGGTCCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCTCCCACCGTTCAAGAG
7820006 CCCGATTCAC
Statistics
Matches: 132, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
41 5 0.04
42 122 0.92
43 5 0.04
ACGTcount: A:0.22, C:0.36, G:0.18, T:0.23
Consensus pattern (41 bp):
TCATTCCTCGAGAGTCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:7819963 original size:21 final size:21
Alignment explanation
Indices: 7819939--7820005 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7819929 TCATTCCTCG
7819939 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
7819960 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
7819981 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
7820002 AGAG
1 AGAG
7820006 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:7819984 original size:84 final size:84
Alignment explanation
Indices: 7819800--7819975 Score: 343
Period size: 84 Copynumber: 2.1 Consensus size: 84
7819790 CCCGACTCGC
*
7819800 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCTT
1 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
7819865 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
7819884 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
7819949 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
7819968 CTGTCATC
1 CTGTCATC
7819976 GTTGAAGAGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 91 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (84 bp):
CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
CCCACCGTTCAAGAGGCCA
Found at i:7820005 original size:84 final size:84
Alignment explanation
Indices: 7819800--7820005 Score: 288
Period size: 84 Copynumber: 2.5 Consensus size: 84
7819790 CCCGACTCGC
* * * * *
7819800 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCTT
1 CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
7819865 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
* * * *
7819884 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
7819949 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
** *
7819968 CTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CTGTCATCCCTCAAGA-GTCCACTCCCACCATTCAAGAG
7820006 CCCGATTCAC
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
84 109 0.96
85 4 0.04
ACGTcount: A:0.22, C:0.36, G:0.18, T:0.23
Consensus pattern (84 bp):
CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
CCCACCGTTCAAGAGGCCA
Found at i:7821372 original size:14 final size:14
Alignment explanation
Indices: 7821353--7821388 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7821343 ATTGTTTAAT
7821353 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
7821367 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
7821381 TGATTTGT
1 TGATTTGT
7821389 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:7821558 original size:19 final size:19
Alignment explanation
Indices: 7821497--7821549 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
7821487 AAAAAGTACT
*
7821497 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
7821516 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
7821535 ATCGCAACGTGAAAT
1 ATCGCAACGCGAAAT
7821550 TAAATTCGCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:7821576 original size:19 final size:19
Alignment explanation
Indices: 7821554--7821618 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
7821544 TGAAATTAAA
*
7821554 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
7821573 TTCGCATTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
7821589 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
7821606 TTCGCATTGCGAT
1 TTCGCATTGCGAT
7821619 AGTAATTTCC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 6 0.17
16 6 0.17
17 6 0.17
19 18 0.50
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:7823927 original size:12 final size:12
Alignment explanation
Indices: 7823910--7823934 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7823900 TCTTCGGGGA
7823910 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7823922 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7823934 C
1 C
7823935 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7824143 original size:24 final size:24
Alignment explanation
Indices: 7824109--7824162 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7824099 CTGAAACATC
*
7824109 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
7824133 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7824157 ATCAAA
1 ATCAAA
7824163 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7824992 original size:21 final size:20
Alignment explanation
Indices: 7824949--7824997 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
7824939 TTTTCCTAAT
*
7824949 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
**
7824969 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TAAGAAAA
7824990 TCGCAATG
1 TCGCAATG
7824998 TGATACTGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:7825022 original size:20 final size:20
Alignment explanation
Indices: 7824989--7825049 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
7824979 AATTTGGAAA
* *
7824989 ATCGCAATGTGATACTGACT
1 ATCGCAACGAGATACTGACT
* *
7825009 ATCGCAACGAGATAAT-ACAAA
1 ATCGCAACGAGATACTGAC--T
*
7825030 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATACTGACT
7825050 TTTGTAACGA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
19 2 0.06
20 13 0.42
21 14 0.45
22 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGAGATACTGACT
Found at i:7825425 original size:19 final size:19
Alignment explanation
Indices: 7825384--7825451 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
7825374 GAAATGAAAA
7825384 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
7825400 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7825417 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7825436 TCGCATTGCAATTTTC
1 TCGCATTGCGATTTTC
7825452 TCGTTGCGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 11 0.24
16 3 0.07
17 3 0.07
19 29 0.63
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7825607 original size:14 final size:14
Alignment explanation
Indices: 7825588--7825624 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7825578 CATCAATTAA
7825588 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
7825602 ACAAATCATCTTTT
1 ACAAATCAACATTT
7825616 ACAAATCAA
1 ACAAATCAA
7825625 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:7827094 original size:21 final size:21
Alignment explanation
Indices: 7827065--7827122 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
7827055 GAACGGTGGG
*
7827065 GGGGACTCTTGAGGGAGGATA
1 GGGGACTCTTGAGGGAGGAGA
* * **
7827086 GGGGCCTCTTGAGCGATTAGA
1 GGGGACTCTTGAGGGAGGAGA
7827107 GGGGACTCTTGAGGGA
1 GGGGACTCTTGAGGGA
7827123 TGACAGGTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.21, C:0.14, G:0.45, T:0.21
Consensus pattern (21 bp):
GGGGACTCTTGAGGGAGGAGA
Found at i:7827546 original size:19 final size:20
Alignment explanation
Indices: 7827491--7827558 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 20
7827481 GAAACTTAAA
*
7827491 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGGAAATGACT
*
7827511 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGCGGAAATGACT
* * **
7827531 ATTGCAATGC-GAAATGAAA
1 ATCGCAACGCGGAAATGACT
7827550 ATCGCAACG
1 ATCGCAACG
7827559 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 13 0.33
20 26 0.67
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:7827585 original size:19 final size:19
Alignment explanation
Indices: 7827488--7827640 Score: 112
Period size: 19 Copynumber: 8.5 Consensus size: 19
7827478 TACGAAACTT
*
7827488 AAAATCGCAACGCGAAAATG
1 AAAATCGCAATGCG-AAATG
** *
7827508 ACTATCGCAACGCGGAAATG
1 AAAATCGCAATGC-GAAATG
*** *
7827528 GCTATTGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
*
7827547 AAAATCGCAA--CG--A-C
1 AAAATCGCAATGCGAAATG
7827561 AAAATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
7827580 AAAATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
* *
7827599 AAAATCGCAA--C--TA-C
1 AAAATCGCAATGCGAAATG
7827613 AAAATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
7827632 -AAATCGCAA
1 AAAATCGCAA
7827641 CGACAAAATC
Statistics
Matches: 107, Mismatches: 15, Indels: 24
0.73 0.10 0.16
Matches are distributed among these distances:
14 20 0.19
15 2 0.02
16 3 0.03
17 3 0.03
18 11 0.10
19 41 0.38
20 26 0.24
21 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (19 bp):
AAAATCGCAATGCGAAATG
Found at i:7827590 original size:52 final size:51
Alignment explanation
Indices: 7827534--7827640 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 51
7827524 AATGGCTATT
7827534 GCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATG-AAATC
*
7827586 GCAATGCGAAATGAAAATCGCAACTACAAAATCGCAATGCGAAATGAAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAATC
7827637 GCAA
1 GCAA
7827641 CGACAAAATC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 9 0.17
52 45 0.83
ACGTcount: A:0.48, C:0.20, G:0.19, T:0.14
Consensus pattern (51 bp):
GCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAATC
Found at i:7827641 original size:32 final size:33
Alignment explanation
Indices: 7827580--7827661 Score: 139
Period size: 32 Copynumber: 2.5 Consensus size: 33
7827570 ATGCGAAATG
*
7827580 AAAATCGCAATGCGAAATGAAAATCGCAACTAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
7827613 AAAATCGCAATGCGAAATG-AAATCGCAACGAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
*
7827645 AAAATCGCAACGCGAAA
1 AAAATCGCAATGCGAAA
7827662 CACAAATCGC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 28 0.60
33 19 0.40
ACGTcount: A:0.49, C:0.22, G:0.17, T:0.12
Consensus pattern (33 bp):
AAAATCGCAATGCGAAATGAAAATCGCAACGAC
Found at i:7827667 original size:52 final size:52
Alignment explanation
Indices: 7827542--7827678 Score: 145
Period size: 52 Copynumber: 2.7 Consensus size: 52
7827532 TTGCAATGCG
* * * * *
7827542 AAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAAATCGCAATGCG
1 AAATGAAAAGCGAAACTACAAAATCGCAATGCGAAATGAAAATCGCAACGCA
* *
7827594 AAATGAAAATCGCAACTACAAAATCGCAATGCGAAATG-AAATCGCAACGACA
1 AAATGAAAAGCGAAACTACAAAATCGCAATGCGAAATGAAAATCGCAACG-CA
* * *
7827646 AAATCGCAACGCGAAAC-AC-AAATCGCATTGCGA
1 AAAT-GAAAAGCGAAACTACAAAATCGCAATGCGA
7827679 TTTTCATTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
51 23 0.31
52 44 0.59
53 8 0.11
ACGTcount: A:0.47, C:0.22, G:0.18, T:0.13
Consensus pattern (52 bp):
AAATGAAAAGCGAAACTACAAAATCGCAATGCGAAATGAAAATCGCAACGCA
Found at i:7827709 original size:14 final size:14
Alignment explanation
Indices: 7827690--7827747 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
7827680 TTTCATTTCG
7827690 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
7827704 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
7827720 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
7827736 CGTTGCGATTTT
1 CGTTGCGATTTT
7827748 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7827754 original size:33 final size:33
Alignment explanation
Indices: 7827673--7827763 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
7827663 ACAAATCGCA
*
7827673 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7827706 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7827738 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
7827764 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:7827800 original size:20 final size:20
Alignment explanation
Indices: 7827748--7827791 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7827738 TTGCGATTTT
*
7827748 CATTT-CGCATTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
*
7827767 CATTTCCGCGTTGCGATAGT
1 CATTTCCGCGTTGCGATAGC
7827787 CATTT
1 CATTT
7827792 TCGTGTTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CATTTCCGCGTTGCGATAGC
Found at i:7828310 original size:18 final size:18
Alignment explanation
Indices: 7828284--7828328 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
7828274 GTCGATCAGA
*
7828284 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
7828302 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
7828320 TGATGGCTC
1 TGATGGCTC
7828329 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:7829681 original size:20 final size:20
Alignment explanation
Indices: 7829648--7829705 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
7829638 AATAGTTTCT
**
7829648 GAAAATGAAAATCGCAACAC
1 GAAAATGACTATCGCAACAC
**
7829668 GAAAATGACTATCGCAATGC
1 GAAAATGACTATCGCAACAC
**
7829688 GAATTTGACTATCGCAAC
1 GAAAATGACTATCGCAAC
7829706 GAGAGAATCG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (20 bp):
GAAAATGACTATCGCAACAC
Found at i:7829814 original size:20 final size:20
Alignment explanation
Indices: 7829789--7829836 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
7829779 AAGAAATCTA
7829789 AGTGAAATGGTTAATCTATT
1 AGTGAAATGGTTAATCTATT
7829809 AGTGAAATGGTTAATCTATT
1 AGTGAAATGGTTAATCTATT
*
7829829 ATTGAAAT
1 AGTGAAAT
7829837 TACCAGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.40
Consensus pattern (20 bp):
AGTGAAATGGTTAATCTATT
Found at i:7830016 original size:22 final size:22
Alignment explanation
Indices: 7829989--7830032 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7829979 GATGGAGATA
*
7829989 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
*
7830011 GACGGATTTCATCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
7830033 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.16, G:0.43, T:0.20
Consensus pattern (22 bp):
GACGGATTTCACCGGAGATGGG
Found at i:7830271 original size:20 final size:20
Alignment explanation
Indices: 7830221--7830272 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
7830211 ATTATGTATT
* *
7830221 ATCGTGTTGCAAAAGTCAGA
1 ATCGCGTTGCGAAAGTCAGA
*
7830241 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTCAGA
*
7830261 ATCTCGTTGCGA
1 ATCGCGTTGCGA
7830273 TTTTGTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTCAGA
Found at i:7830306 original size:20 final size:20
Alignment explanation
Indices: 7830281--7830334 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
7830271 GATTTTGTAT
7830281 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
7830301 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
7830321 TATCGCATTGCGAT
1 TATCGCATTGCGAT
7830335 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:7830306 original size:61 final size:61
Alignment explanation
Indices: 7830200--7830337 Score: 177
Period size: 61 Copynumber: 2.3 Consensus size: 61
7830190 CTCTTTGAAA
* ** * *
7830200 ATCGCATTGCGATTATGTATTATCGTGTTGCAAAAGTCAGAATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCAAAAGTAAGAATCGCATTGCGAAAGTCAGT
* * * * * *
7830261 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCAAAAGTAAGAATCGCATTGCGAAAGTCAGT
7830322 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
7830338 CCCAATTCGC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (61 bp):
ATCGCATTGCGATTTTGTATTATCGCATTGCAAAAGTAAGAATCGCATTGCGAAAGTCAGT
Found at i:7830353 original size:61 final size:61
Alignment explanation
Indices: 7830241--7830355 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
7830231 AAAAGTCAGA
* * * ** *
7830241 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
* *
7830302 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAATATCGCATTGCGAT
7830356 TTACCCAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
61 43 0.96
62 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
Found at i:7830388 original size:20 final size:21
Alignment explanation
Indices: 7830323--7830380 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
7830313 ATAGTCAGTA
* *
7830323 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTACCCAAT
7830344 TCGCGTTGCGATTTACCCAAT
1 TCGCGTTGCGATTTACCCAAT
7830365 TCGCGTTGCGATTTAC
1 TCGCGTTGCGATTTAC
7830381 TTATTCGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCGTTGCGATTTACCCAAT
Found at i:7830393 original size:20 final size:20
Alignment explanation
Indices: 7830323--7830395 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 20
7830313 ATAGTCAGTA
*
7830323 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
*
7830344 TCGCGTTGCGATTTACCCAAT
1 TCGCATTGCGATTTA-CCAAT
* **
7830365 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
7830385 TCGCATTGCGA
1 TCGCATTGCGA
7830396 ATTGGGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:7830466 original size:21 final size:21
Alignment explanation
Indices: 7830426--7830466 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7830416 ACTGTAGACC
** *
7830426 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
7830447 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
7830467 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:7830697 original size:36 final size:36
Alignment explanation
Indices: 7830650--7830737 Score: 167
Period size: 36 Copynumber: 2.4 Consensus size: 36
7830640 ACGTGCCCTA
7830650 GATATAAGCCATGACACACCACAAATATTAGTGTAT
1 GATATAAGCCATGACACACCACAAATATTAGTGTAT
7830686 GATATAAGCCATGACACACCACAAATATTAGTGTAT
1 GATATAAGCCATGACACACCACAAATATTAGTGTAT
*
7830722 GATATATGCCATGACA
1 GATATAAGCCATGACA
7830738 TTTTGGTTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (36 bp):
GATATAAGCCATGACACACCACAAATATTAGTGTAT
Found at i:7831754 original size:16 final size:17
Alignment explanation
Indices: 7831729--7831761 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7831719 TTAACTATAA
*
7831729 CATAATTATA-AATTAT
1 CATAAGTATATAATTAT
7831745 CATAAGTATATAATTAT
1 CATAAGTATATAATTAT
7831762 AACATCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (17 bp):
CATAAGTATATAATTAT
Found at i:7831797 original size:22 final size:24
Alignment explanation
Indices: 7831772--7831815 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
7831762 AACATCAAGT
7831772 AAAATATAT-TAATTT-TATAAAA
1 AAAATATATATAATTTATATAAAA
*
7831794 AAAATATTTATAATTTATATAA
1 AAAATATATATAATTTATATAA
7831816 CTATACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 6 0.32
24 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAATATATATAATTTATATAAAA
Found at i:7832137 original size:2 final size:2
Alignment explanation
Indices: 7832130--7832160 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7832120 TTTTAAACTG
7832130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7832161 CAAAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7832230 original size:2 final size:2
Alignment explanation
Indices: 7832223--7832290 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
7832213 TATTTGTTAC
7832223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7832265 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7832291 TGTCGACACT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7832349 original size:6 final size:6
Alignment explanation
Indices: 7832336--7832365 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7832326 ATTATTATTT
7832336 TATT-A TATTAA TATTAA TATTAA TATTAA T
1 TATTAA TATTAA TATTAA TATTAA TATTAA T
7832366 TACATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:7833747 original size:18 final size:19
Alignment explanation
Indices: 7833724--7833762 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
7833714 ATATTCATGT
7833724 ATATTTAAAAAAT-TATAC
1 ATATTTAAAAAATGTATAC
*
7833742 ATATTTAAAATATGTATAC
1 ATATTTAAAAAATGTATAC
7833761 AT
1 AT
7833763 GTATGTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (19 bp):
ATATTTAAAAAATGTATAC
Found at i:7834164 original size:17 final size:17
Alignment explanation
Indices: 7834138--7834175 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7834128 TGCAAACTAA
7834138 TTTTTATCTTTAAAATAG
1 TTTTTATC-TTAAAATAG
*
7834156 TTTTT-TCTTAAAATTG
1 TTTTTATCTTAAAATAG
7834172 TTTT
1 TTTT
7834176 AAACGACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 12 0.63
17 2 0.11
18 5 0.26
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
TTTTTATCTTAAAATAG
Found at i:7836294 original size:20 final size:19
Alignment explanation
Indices: 7836271--7836332 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
7836261 ACTTACTTTA
7836271 TTTTGTTAATTTGGTTGGAT
1 TTTTGTTAATTT-GTTGGAT
7836291 TTTT-TTAA--T-TT--A-
1 TTTTGTTAATTTGTTGGAT
7836303 TTTTGTTAATTTTGTTGGAT
1 TTTTGTTAA-TTTGTTGGAT
7836323 TTTTGTTAAT
1 TTTTGTTAAT
7836333 ATATTTGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 17
0.67 0.00 0.33
Matches are distributed among these distances:
12 4 0.12
13 5 0.15
15 2 0.06
16 1 0.03
17 3 0.09
19 6 0.18
20 13 0.38
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (19 bp):
TTTTGTTAATTTGTTGGAT
Found at i:7836303 original size:32 final size:33
Alignment explanation
Indices: 7836267--7836347 Score: 128
Period size: 32 Copynumber: 2.5 Consensus size: 33
7836257 TAATACTTAC
7836267 TTTATTTTGTTAATTTGGTTGGATTTTT-TTAA
1 TTTATTTTGTTAATTTGGTTGGATTTTTGTTAA
*
7836299 TTTATTTTGTTAATTTTGTTGGATTTTTGTTAA
1 TTTATTTTGTTAATTTGGTTGGATTTTTGTTAA
* *
7836332 TATATTTGGTTAATTT
1 TTTATTTTGTTAATTT
7836348 TATTTGTTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65
Consensus pattern (33 bp):
TTTATTTTGTTAATTTGGTTGGATTTTTGTTAA
Found at i:7838097 original size:98 final size:98
Alignment explanation
Indices: 7837928--7838125 Score: 396
Period size: 98 Copynumber: 2.0 Consensus size: 98
7837918 AAATAAACAA
7837928 AGGACCGCCAACAATTAAATATTTAATACTCGTCAACCATATTCTACTTCTAGCTACTTACTTTT
1 AGGACCGCCAACAATTAAATATTTAATACTCGTCAACCATATTCTACTTCTAGCTACTTACTTTT
7837993 TGGTATACAATTATTTGAATGGAATGCAGTTGG
66 TGGTATACAATTATTTGAATGGAATGCAGTTGG
7838026 AGGACCGCCAACAATTAAATATTTAATACTCGTCAACCATATTCTACTTCTAGCTACTTACTTTT
1 AGGACCGCCAACAATTAAATATTTAATACTCGTCAACCATATTCTACTTCTAGCTACTTACTTTT
7838091 TGGTATACAATTATTTGAATGGAATGCAGTTGG
66 TGGTATACAATTATTTGAATGGAATGCAGTTGG
7838124 AG
1 AG
7838126 AACCAGATTC
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 100 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (98 bp):
AGGACCGCCAACAATTAAATATTTAATACTCGTCAACCATATTCTACTTCTAGCTACTTACTTTT
TGGTATACAATTATTTGAATGGAATGCAGTTGG
Found at i:7838526 original size:20 final size:19
Alignment explanation
Indices: 7838491--7838557 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
7838481 GAAACTTAAA
7838491 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
7838510 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
7838530 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
7838549 ATCGCAACG
1 ATCGCAACG
7838558 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:7838565 original size:14 final size:14
Alignment explanation
Indices: 7838546--7838603 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
7838536 ATGCGAAATG
7838546 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
7838560 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
7838576 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
7838592 AAAATCGCAACG
1 AAAATCGCAACG
7838604 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:7838588 original size:32 final size:33
Alignment explanation
Indices: 7838530--7838608 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
7838520 GGAAATGGCT
*
7838530 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
7838563 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
7838595 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
7838609 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:7838637 original size:19 final size:19
Alignment explanation
Indices: 7838615--7838740 Score: 76
Period size: 19 Copynumber: 7.2 Consensus size: 19
7838605 GAAACACAAA
7838615 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
7838634 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
7838650 TCG--TTGCGA-TTTCATT
1 TCGCATTGCGATTTTCATT
* *
7838666 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
7838682 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
***
7838699 TCGCATTGCGATAGCCATT
1 TCGCATTGCGATTTTCATT
**
7838718 TCCGCATTGCGATAGTCATT
1 T-CGCATTGCGATTTTCATT
7838738 TCG
1 TCG
7838741 TGTTGCGAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
14 14 0.16
15 3 0.03
16 12 0.14
17 4 0.05
18 12 0.14
19 23 0.27
20 18 0.21
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7838656 original size:14 final size:14
Alignment explanation
Indices: 7838637--7838694 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
7838627 TTTCATTTCG
7838637 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
7838651 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
7838667 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
7838683 CGTTGTGATTTT
1 CGTTGCGATTTT
7838695 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.09, C:0.16, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7838701 original size:33 final size:33
Alignment explanation
Indices: 7838620--7838710 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
7838610 ACAAATCGCA
7838620 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
7838653 TTGCGA-TTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
* *
7838685 TTGTGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
7838711 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:7838748 original size:19 final size:19
Alignment explanation
Indices: 7838694--7838740 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
7838684 GTTGTGATTT
7838694 TCATTTCGCATTGCGATAG
1 TCATTTCGCATTGCGATAG
*
7838713 CCATTTCCGCATTGCGATAG
1 TCATTT-CGCATTGCGATAG
7838733 TCATTTCG
1 TCATTTCG
7838741 TGTTGCGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (19 bp):
TCATTTCGCATTGCGATAG
Found at i:7839247 original size:18 final size:18
Alignment explanation
Indices: 7839221--7839265 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
7839211 GTCGATCAGA
* *
7839221 TGATGGCTCTGGGTGGGG
1 TGATGGCTCTGGGCGAGG
*
7839239 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
7839257 TGATGGCTC
1 TGATGGCTC
7839266 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.47, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:7840826 original size:22 final size:22
Alignment explanation
Indices: 7840801--7840844 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7840791 GATTTAGATA
7840801 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
7840823 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
7840845 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:7841055 original size:20 final size:20
Alignment explanation
Indices: 7841032--7841083 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
7841022 GATTATGTAA
*
7841032 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTAAGT
7841052 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGAAAGTAAGT
*
7841072 ATCTCGTTGCGA
1 ATCGCGTTGCGA
7841084 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTAAGT
Found at i:7841138 original size:20 final size:20
Alignment explanation
Indices: 7841094--7841186 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
7841084 TTTTGTATTA
* **
7841094 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
7841115 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
7841135 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
7841156 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
7841176 TCGCATTGCGA
1 TCGCATTGCGA
7841187 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:7841139 original size:41 final size:41
Alignment explanation
Indices: 7841094--7841186 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
7841084 TTTTGTATTA
7841094 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
7841135 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
7841176 TCGCATTGCGA
1 TCGCATTGCGA
7841187 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:7842379 original size:27 final size:27
Alignment explanation
Indices: 7842330--7842381 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
7842320 GACCAATTAT
*
7842330 TATTTAATATATGATTATATAATTTTC
1 TATTTAATATATGATCATATAATTTTC
* *
7842357 TATTTAATATATTATCATTTAATTT
1 TATTTAATATATGATCATATAATTT
7842382 GATTAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (27 bp):
TATTTAATATATGATCATATAATTTTC
Found at i:7842533 original size:2 final size:2
Alignment explanation
Indices: 7842526--7842570 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
7842516 TAATTTTAAG
*
7842526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7842568 AT A
1 AT A
7842571 ACTAAAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7847616 original size:35 final size:36
Alignment explanation
Indices: 7847569--7847650 Score: 123
Period size: 35 Copynumber: 2.3 Consensus size: 36
7847559 AACACAATCA
*
7847569 TCAATTATATTCTAAACC-CTAAATTCC-AAAATACT
1 TCAATTACATTCTAAACCTC-AAATTCCAAAAATACT
7847604 TCAATTACATTCTAAACCTCAAATTCCAAAAAATACT
1 TCAATTACATTCTAAACCTCAAATTCC-AAAAATACT
7847641 TCAATTACAT
1 TCAATTACAT
7847651 GTCCAACCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
35 24 0.56
36 1 0.02
37 18 0.42
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (36 bp):
TCAATTACATTCTAAACCTCAAATTCCAAAAATACT
Found at i:7847664 original size:37 final size:35
Alignment explanation
Indices: 7847569--7847666 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 35
7847559 AACACAATCA
* *
7847569 TCAATTATATTCTAAACCCTAAATTCCAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATACT
*
7847604 TCAATTACATTCTAAACCTCAAATTCCAAAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCC--AAAATACT
*
7847641 TCAATTACATGTC-CAACCCCAAATTC
1 TCAATTACAT-TCTAAACCCCAAATTC
7847667 ATAATCCATT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 24 0.44
37 29 0.53
38 2 0.04
ACGTcount: A:0.42, C:0.27, G:0.01, T:0.31
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCCAAAATACT
Found at i:7848332 original size:144 final size:144
Alignment explanation
Indices: 7848150--7848434 Score: 410
Period size: 144 Copynumber: 2.0 Consensus size: 144
7848140 AAACTATTTA
* * * * **
7848150 AATTAGAATAAAATAATATTATAGTATTATAAATATTTATAATTAAATTTAAATAGAAACTTGAA
1 AATTAGAATAAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAAAAACTCAAA
* *
7848215 AATTCAATTC-GACTTGATTTAAATTTTTTTAAACTCAAATCGAAAAAATTTCGAGTCAACTATT
66 AATTCAATTCTGACTTGATTTAAA-TTTTATAAACTCAAATCGAAAAAATTTCGAGTAAACTATT
7848279 TTATAAACTGAACTG
130 TTATAAACTGAACTG
* *
7848294 AATTATAATAAAATGATATTATAATATGATAAATATTTATAATTAAATTTAAAAAAAAACTCAAA
1 AATTAGAATAAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAAAAACTCAAA
* *
7848359 AATTCAATTCTATTTGACTTGATTTAAATTTTATAAACTCAAATTGAAAAAATTTCTAGTAAACT
66 AATTCAATTC----TGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAATTTCGAGTAAACT
7848424 ATTTTATAAAC
127 ATTTTATAAAC
7848435 CGAATTGTGT
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
144 67 0.54
148 44 0.35
149 13 0.10
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.39
Consensus pattern (144 bp):
AATTAGAATAAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAAAAACTCAAA
AATTCAATTCTGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAATTTCGAGTAAACTATTT
TATAAACTGAACTG
Found at i:7848693 original size:35 final size:35
Alignment explanation
Indices: 7848600--7848694 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 35
7848590 AATGAATTAT
* * *
7848600 GAATTTG-GGTTTGGCATGTAATTAAAGTATTTTG
1 GAATTTGAGGTTTAGAATGTAATTGAAGTATTTTG
*
7848634 GAATTTGTGGTTTAGAATGTAATTGAAGTATTTTG
1 GAATTTGAGGTTTAGAATGTAATTGAAGTATTTTG
*
7848669 GATTTTGAGGTTTAGAATGTAATTGA
1 GAATTTGAGGTTTAGAATGTAATTGA
7848695 TAATTGTGTT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
34 7 0.13
35 48 0.87
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (35 bp):
GAATTTGAGGTTTAGAATGTAATTGAAGTATTTTG
Found at i:7852806 original size:9 final size:9
Alignment explanation
Indices: 7852792--7852897 Score: 111
Period size: 8 Copynumber: 12.4 Consensus size: 9
7852782 AAAAGAAAAT
7852792 AAAAAGAGA
1 AAAAAGAGA
7852801 AAAAAGAG-
1 AAAAAGAGA
7852809 AAAAAGAGA
1 AAAAAGAGA
*
7852818 AAAAA-A-T
1 AAAAAGAGA
7852825 AAAAAGAGA
1 AAAAAGAGA
7852834 AAAAAGA-A
1 AAAAAGAGA
7852842 AAAAAGCAAGA
1 AAAAAG--AGA
* *
7852853 GAAAACAGA
1 AAAAAGAGA
7852862 AAAAAGA-A
1 AAAAAGAGA
7852870 AAAAAGA-A
1 AAAAAGAGA
7852878 AAAAA-AGA
1 AAAAAGAGA
7852886 AAAAAGA-A
1 AAAAAGAGA
7852894 AAAA
1 AAAA
7852898 GAAAATAGAC
Statistics
Matches: 83, Mismatches: 6, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
7 6 0.07
8 42 0.51
9 29 0.35
10 1 0.01
11 5 0.06
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.01
Consensus pattern (9 bp):
AAAAAGAGA
Found at i:7852872 original size:7 final size:7
Alignment explanation
Indices: 7852781--7852902 Score: 95
Period size: 7 Copynumber: 16.4 Consensus size: 7
7852771 AAAAACACAC
7852781 AAAAAGA
1 AAAAAGA
*
7852788 AAATA-A
1 AAAAAGA
*
7852794 AAAGAGAA
1 AAAAAG-A
7852802 AAAAGAGA
1 AAAA-AGA
7852810 AAAAGAGAA
1 AAAA-AG-A
*
7852819 AAAAATA
1 AAAAAGA
7852826 AAAAGAGA
1 AAAA-AGA
7852834 AAAAAGA
1 AAAAAGA
7852841 AAAAA-A
1 AAAAAGA
* *
7852847 GCAAGAGA
1 -AAAAAGA
*
7852855 AAACAGA
1 AAAAAGA
7852862 AAAAAGAA
1 AAAAAG-A
7852870 AAAAAGAAA
1 AAAAAG--A
7852879 AAAAAGA
1 AAAAAGA
7852886 AAAAAGA
1 AAAAAGA
7852893 AAAAAGA
1 AAAAAGA
7852900 AAA
1 AAA
7852903 TAGACAGATC
Statistics
Matches: 96, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
6 6 0.06
7 48 0.50
8 27 0.28
9 15 0.16
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:7852873 original size:52 final size:52
Alignment explanation
Indices: 7852767--7852897 Score: 160
Period size: 52 Copynumber: 2.5 Consensus size: 52
7852757 GAAGAGATAT
*
7852767 AGAAAAAAACACACAAAAAGAAAATAAAAAGAGAAAAAAGAGAAAAAGAGAAAAA
1 AGAAAAAAA-AGA-AAAAAGAAAA-AAAAAGAGAAAAAAGAGAAAAAGAGAAAAA
* *
7852822 A-ATAAAAAGAGAAAAAAGAAAAAAAGCAAGAGAAAACAGA-AAAAAGA-AAAAA
1 AGA-AAAAAAAGAAAAAAGAAAAAAA--AAGAGAAAAAAGAGAAAAAGAGAAAAA
7852874 AGAAAAAAAAGAAAAAAGAAAAAA
1 AGAAAAAAAAGAAAAAAGAAAAAA
7852898 GAAAATAGAC
Statistics
Matches: 68, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
52 29 0.43
53 18 0.26
54 15 0.22
55 6 0.09
ACGTcount: A:0.80, C:0.04, G:0.15, T:0.02
Consensus pattern (52 bp):
AGAAAAAAAAGAAAAAAGAAAAAAAAAGAGAAAAAAGAGAAAAAGAGAAAAA
Found at i:7855188 original size:18 final size:18
Alignment explanation
Indices: 7855165--7855205 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7855155 GGGCATTTGA
**
7855165 TCCTCTGGTCGTGCTTGT
1 TCCTCTGGTCGAACTTGT
*
7855183 TCCTCTGGTGGAACTTGT
1 TCCTCTGGTCGAACTTGT
7855201 TCCTC
1 TCCTC
7855206 GTGTTGTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.29, G:0.24, T:0.41
Consensus pattern (18 bp):
TCCTCTGGTCGAACTTGT
Found at i:7868190 original size:22 final size:22
Alignment explanation
Indices: 7868165--7868236 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
7868155 CTTAATAGAG
7868165 GCAGGCAAGAAAAACTTGGTAT
1 GCAGGCAAGAAAAACTTGGTAT
* * *
7868187 GCAGGTTGAAGAAGAGCTT-GTAT
1 GCAGG--CAAGAAAAACTTGGTAT
7868210 GCAGGCAAGAAAAACTTGGTAT
1 GCAGGCAAGAAAAACTTGGTAT
*
7868232 CCAGG
1 GCAGG
7868237 TTCAACATGC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
21 9 0.22
22 13 0.32
23 9 0.22
24 9 0.22
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.19
Consensus pattern (22 bp):
GCAGGCAAGAAAAACTTGGTAT
Found at i:7868199 original size:24 final size:24
Alignment explanation
Indices: 7868170--7868241 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
7868160 TAGAGGCAGG
7868170 CAAGAAAAACTTGGTATGCAGGTT
1 CAAGAAAAACTTGGTATGCAGGTT
* * *
7868194 GAAGAAGAGCTT-GTATGCAGG--
1 CAAGAAAAACTTGGTATGCAGGTT
*
7868215 CAAGAAAAACTTGGTATCCAGGTT
1 CAAGAAAAACTTGGTATGCAGGTT
7868239 CAA
1 CAA
7868242 CATGCAAGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
21 9 0.24
22 8 0.21
23 9 0.24
24 12 0.32
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (24 bp):
CAAGAAAAACTTGGTATGCAGGTT
Found at i:7870274 original size:23 final size:21
Alignment explanation
Indices: 7870223--7870281 Score: 55
Period size: 23 Copynumber: 2.7 Consensus size: 21
7870213 CGATTCCCCC
7870223 TCGATTCCCCTACAGGGGGAA
1 TCGATTCCCCTACAGGGGGAA
* * **
7870244 TCGGTTCCCCTTCAAGGGGGGTG
1 TCGATTCCCCTAC-A-GGGGGAA
7870267 TCGATTCCCTCTACA
1 TCGATTCCC-CTACA
7870282 CTAAAATTGC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 11 0.38
22 1 0.03
23 14 0.48
24 3 0.10
ACGTcount: A:0.17, C:0.31, G:0.27, T:0.25
Consensus pattern (21 bp):
TCGATTCCCCTACAGGGGGAA
Found at i:7874095 original size:22 final size:21
Alignment explanation
Indices: 7874053--7874092 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7874043 GAGCTTATTT
*
7874053 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7874074 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7874093 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7877597 original size:4 final size:4
Alignment explanation
Indices: 7877584--7881112 Score: 6977
Period size: 4 Copynumber: 884.5 Consensus size: 4
7877574 TTTATTTAAG
*
7877584 TACA TTCA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877632 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877680 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877728 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877776 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877824 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877872 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877920 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7877968 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878016 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878064 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878112 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878160 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878208 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878256 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878304 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878352 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878400 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878448 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878496 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878544 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878592 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878640 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878688 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878736 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878784 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878832 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878880 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878928 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7878976 TACA TACA TACA TACA TAC- -ACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879022 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879070 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879118 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879166 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879214 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879262 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879310 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879358 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879406 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879454 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879502 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879550 TACA TAC- -ACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879596 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879644 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879692 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879740 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879788 TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC- -ACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879834 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879882 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879930 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7879978 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880026 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880074 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880122 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880170 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880218 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880266 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880314 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880362 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880410 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880458 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880506 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880554 TACA TACA TACA TACA TACA TAC- TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880601 TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC- -ACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880647 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880695 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880743 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880791 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880839 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880887 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880935 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7880983 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
7881031 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
7881079 TACA TACA TACA TACA TACA TACA TTCA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TA
7881113 ATTCCTACAG
Statistics
Matches: 3512, Mismatches: 4, Indels: 18
0.99 0.00 0.01
Matches are distributed among these distances:
2 8 0.00
3 3 0.00
4 3501 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:7881356 original size:55 final size:55
Alignment explanation
Indices: 7881283--7881537 Score: 327
Period size: 55 Copynumber: 4.7 Consensus size: 55
7881273 TTTTTTTTTT
* * *
7881283 AACTAACTCTGATTTTCAGAAGTTTCTTGACAATTTTCAAATGAGCTTATAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
* * * * *
7881338 AATTAATTCT-ATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTAAAAGA
1 AACTAAGTCTGA-TTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
* * *
7881393 AATTAAGTTTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
* * * *
7881448 AACTAAGTCTGATTTTCAAAATTTTCTTTATGATTTTCAAATGA--TTTTAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
* *
7881501 AACTAAGTCTGATTTTCATAAGTTTCTTGATGATTTT
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTT
7881538 TAAAATAACT
Statistics
Matches: 176, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 43 0.24
54 1 0.01
55 131 0.74
56 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.44
Consensus pattern (55 bp):
AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
Found at i:7881581 original size:55 final size:53
Alignment explanation
Indices: 7881333--7881687 Score: 178
Period size: 55 Copynumber: 6.5 Consensus size: 53
7881323 ATGAGCTTAT
** ** * *
7881333 AAAGAAATTAATTCT-ATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTA
1 AAAGAAATTAAGCCTAATTTTT-AGGGGTTTCTTGATG-TTTTAAAATGA-ATTTA
** * * ** * * * *
7881388 AAAGAAATTAAGTTTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTT
1 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATG-TTTTAAAATGA-ATTTA
* * * * **** * * *
7881443 AAAGAAACTAAGTCTGATTTTCAAAATTTTCTTTATGATTTTCAAATG-ATTTT
1 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATG-TTTTAAAATGAATTTA
* * * * *** *
7881496 AAAGAAACTAAGTCTGATTTTCATAAGTTTCTTGATGATTTTTAAAAT-AACTTTC
1 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATG--TTTTAAAATGAA-TTTA
*
7881551 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATGTTTTAATATGAATTTGAAA
1 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATGTTTTAAAATGAATTT---A
* * * * * *
7881607 AAAAAAACTAAGCCTGATTTTTAGGGG-TTCTCGATGTTTTCAAATGAATTTG
1 AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATGTTTTAAAATGAATTTA
* *
7881659 AAAGGAGTTAAGCCTAATTTTTAGGGGTT
1 AAAGAAATTAAGCCTAATTTTTAGGGGTT
7881688 CATTGACAAT
Statistics
Matches: 250, Mismatches: 41, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
52 22 0.09
53 50 0.20
54 11 0.04
55 138 0.55
56 29 0.12
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.42
Consensus pattern (53 bp):
AAAGAAATTAAGCCTAATTTTTAGGGGTTTCTTGATGTTTTAAAATGAATTTA
Found at i:7881583 original size:163 final size:164
Alignment explanation
Indices: 7881283--7881585 Score: 396
Period size: 163 Copynumber: 1.8 Consensus size: 164
7881273 TTTTTTTTTT
* * *
7881283 AACTAACTCTGATTTTCAGAAGTTTCTTGACAATTTTCAAATGAGCTTATAAAGAAATTAATTCT
1 AACTAACTCTGATTTTCAAAAGTTTCTTGACAATTTTCAAATGA-CTTATAAAGAAACTAAGTCT
* ** *
7881348 ATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTAAAAGAAATTAAGTTTGATTTTCAGA
65 ATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAACTTTAAAAGAAATTAAGCCTAATTTTCAGA
7881413 AGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
130 AGTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
* * * ** *
7881448 AACTAAGTCTGATTTTCAAAATTTTCTTTATGATTTTCAAATGA-TTTTAAAGAAACTAAGTCTG
1 AACTAACTCTGATTTTCAAAAGTTTCTTGACAATTTTCAAATGACTTATAAAGAAACTAAGTCT-
* * *
7881512 A-TTTTCATAAGTTTCTTGATGATTTTTAAAAT-AACTTTCAAAGAAATTAAGCCTAATTTTTAG
65 ATTTTTCAGAAGTTTCTTGATGATTTTT-AAATGAACTTTAAAAGAAATTAAGCCTAATTTTCAG
**
7881575 GGGTTTCTTGA
129 AAGTTTCTTGA
7881586 TGTTTTAATA
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
163 75 0.64
164 5 0.04
165 38 0.32
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (164 bp):
AACTAACTCTGATTTTCAAAAGTTTCTTGACAATTTTCAAATGACTTATAAAGAAACTAAGTCTA
TTTTTCAGAAGTTTCTTGATGATTTTTAAATGAACTTTAAAAGAAATTAAGCCTAATTTTCAGAA
GTTTCTTGACGATTTTCAAATGAGTTTTTAAAGA
Found at i:7881951 original size:37 final size:37
Alignment explanation
Indices: 7881910--7882026 Score: 110
Period size: 37 Copynumber: 3.2 Consensus size: 37
7881900 GTTTTACTCG
* *
7881910 AAACAAAATTTTATCTCACTCGAGATTGTTTTTCTTA
1 AAACAAAATTTTATCTCACTTGAGATTATTTTTCTTA
* ** ** ** **
7881947 AAAC-AAACTTCGTCTCACTTGAGACAATTTCACTCG
1 AAACAAAATTTTATCTCACTTGAGATTATTTTTCTTA
* *
7881983 AAGCAAAATTTTATATCACTTGAGATTATTTTTCTTA
1 AAACAAAATTTTATCTCACTTGAGATTATTTTTCTTA
7882020 AAACAAA
1 AAACAAA
7882027 CTGTATATGT
Statistics
Matches: 56, Mismatches: 23, Indels: 2
0.69 0.28 0.02
Matches are distributed among these distances:
36 24 0.43
37 32 0.57
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.37
Consensus pattern (37 bp):
AAACAAAATTTTATCTCACTTGAGATTATTTTTCTTA
Found at i:7882002 original size:73 final size:73
Alignment explanation
Indices: 7881883--7882028 Score: 229
Period size: 73 Copynumber: 2.0 Consensus size: 73
7881873 TGAGATATCA
* * * * *
7881883 TCGTCTCGCTTGAGACAGTTTTACTCGAAACAAAATTTTATCTCACTCGAGATTGTTTTTCTTAA
1 TCGTCTCACTTGAGACAATTTCACTCGAAACAAAATTTTATATCACTCGAGATTATTTTTCTTAA
7881948 AACAAACT
66 AACAAACT
* *
7881956 TCGTCTCACTTGAGACAATTTCACTCGAAGCAAAATTTTATATCACTTGAGATTATTTTTCTTAA
1 TCGTCTCACTTGAGACAATTTCACTCGAAACAAAATTTTATATCACTCGAGATTATTTTTCTTAA
7882021 AACAAACT
66 AACAAACT
7882029 GTATATGTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (73 bp):
TCGTCTCACTTGAGACAATTTCACTCGAAACAAAATTTTATATCACTCGAGATTATTTTTCTTAA
AACAAACT
Found at i:7882063 original size:20 final size:20
Alignment explanation
Indices: 7882034--7882110 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
7882024 AAACTGTATA
7882034 TGTCCCGAAGGACCACTGAT
1 TGTCCCGAAGGACCACTGAT
* *
7882054 TGTTCCGAAGAACCACT-A-
1 TGTCCCGAAGGACCACTGAT
*
7882072 TATCCCGAAGGACCACTGTAT
1 TGTCCCGAAGGACCACTG-AT
7882093 ATGTCCCGAAGGACCACT
1 -TGTCCCGAAGGACCACT
7882111 CCTTAAAAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
18 14 0.30
19 1 0.02
20 16 0.34
22 16 0.34
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (20 bp):
TGTCCCGAAGGACCACTGAT
Found at i:7882083 original size:38 final size:40
Alignment explanation
Indices: 7882036--7882110 Score: 118
Period size: 38 Copynumber: 1.9 Consensus size: 40
7882026 ACTGTATATG
*
7882036 TCCCGAAGGACCACTG-AT-TGTTCCGAAGAACCACTATA
1 TCCCGAAGGACCACTGTATATGTCCCGAAGAACCACTATA
*
7882074 TCCCGAAGGACCACTGTATATGTCCCGAAGGACCACT
1 TCCCGAAGGACCACTGTATATGTCCCGAAGAACCACT
7882111 CCTTAAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 16 0.48
39 2 0.06
40 15 0.45
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (40 bp):
TCCCGAAGGACCACTGTATATGTCCCGAAGAACCACTATA
Found at i:7882100 original size:22 final size:22
Alignment explanation
Indices: 7882026--7882110 Score: 110
Period size: 22 Copynumber: 4.1 Consensus size: 22
7882016 CTTAAAACAA
7882026 ACTGTATATGTCCCGAAGGACC
1 ACTGTATATGTCCCGAAGGACC
* *
7882048 ACTG-AT-TGTTCCGAAGAACC
1 ACTGTATATGTCCCGAAGGACC
7882068 AC--TATA--TCCCGAAGGACC
1 ACTGTATATGTCCCGAAGGACC
7882086 ACTGTATATGTCCCGAAGGACC
1 ACTGTATATGTCCCGAAGGACC
7882108 ACT
1 ACT
7882111 CCTTAAAAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
18 12 0.23
19 2 0.04
20 18 0.34
21 2 0.04
22 19 0.36
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (22 bp):
ACTGTATATGTCCCGAAGGACC
Found at i:7882209 original size:21 final size:22
Alignment explanation
Indices: 7882155--7882210 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
7882145 ATAAGTGTGC
*
7882155 CAAAGTACCACATATATGTTCCA
1 CAAAG-ACCACATATATGTCCCA
**
7882178 CAAA-ATTACATATATGTCCCA
1 CAAAGACCACATATATGTCCCA
7882199 -AAAGACCACATA
1 CAAAGACCACATA
7882211 GAACCCTCGA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 3 0.11
21 20 0.74
23 4 0.15
ACGTcount: A:0.45, C:0.25, G:0.07, T:0.23
Consensus pattern (22 bp):
CAAAGACCACATATATGTCCCA
Found at i:7882884 original size:19 final size:19
Alignment explanation
Indices: 7882860--7882911 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
7882850 TTTAAGCAGG
7882860 TGCATCGATGCACTCCGTA
1 TGCATCGATGCACTCCGTA
7882879 TGCATCGATGCACTCCGTA
1 TGCATCGATGCACTCCGTA
7882898 TGCATCGATGCACT
1 TGCATCGATGCACT
7882912 AATTGCATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (19 bp):
TGCATCGATGCACTCCGTA
Found at i:7888593 original size:18 final size:20
Alignment explanation
Indices: 7888542--7888595 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
7888532 CTGAATATTT
7888542 TTCCTGAAGGACCACTAATTG
1 TTCC-GAAGGACCACTAATTG
*
7888563 TTCCGAAGAACCACT-A-TG
1 TTCCGAAGGACCACTAATTG
7888581 -TCACGAAGGACCACT
1 TTC-CGAAGGACCACT
7888596 GTATATGTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 2 0.07
18 13 0.43
19 1 0.03
20 10 0.33
21 4 0.13
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (20 bp):
TTCCGAAGGACCACTAATTG
Found at i:7888978 original size:2 final size:2
Alignment explanation
Indices: 7888971--7889004 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7888961 ATTGTATCCA
7888971 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7889005 CTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.