Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 49
Found at i:7889427 original size:19 final size:19
Alignment explanation
Indices: 7889403--7889454 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
7889393 TTTAAGCAGG
* *
7889403 TGCATCAATGCACTCCTTA
1 TGCATCGATGCACTCCGTA
7889422 TGCATCGATGCACTCCGTA
1 TGCATCGATGCACTCCGTA
7889441 TGCATCGATGCACT
1 TGCATCGATGCACT
7889455 AATTGCATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (19 bp):
TGCATCGATGCACTCCGTA
Found at i:7889515 original size:21 final size:21
Alignment explanation
Indices: 7889485--7889540 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
7889475 TATTTAAGAG
7889485 TGCATCGATACACATTGAATA
1 TGCATCGATACACATTGAATA
* *
7889506 TGCATTGATACACATTGAATG
1 TGCATCGATACACATTGAATA
* *
7889527 TACATCGATGCACA
1 TGCATCGATACACA
7889541 CAACCCAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (21 bp):
TGCATCGATACACATTGAATA
Found at i:7890644 original size:20 final size:19
Alignment explanation
Indices: 7890582--7890645 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
7890572 CCAGTAGAGA
7890582 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* * *
7890601 CATCCGATAAGAGAGAAGAA--
1 -GTTC-ATAA-TGAGAAGAACT
7890621 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
7890641 GTTCA
1 GTTCA
7890646 ACCTTAGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 8 0.24
18 4 0.12
19 2 0.06
20 7 0.21
21 4 0.12
22 8 0.24
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.23
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:7890813 original size:139 final size:139
Alignment explanation
Indices: 7890563--7891210 Score: 1125
Period size: 139 Copynumber: 4.7 Consensus size: 139
7890553 GGTAAATCAG
* * *
7890563 TCAACATTTCCAGTAGAGAGTTCATAATGAGAAGAACTCATCCGATAAGAGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
7890628 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
*
7890693 CTTGAGGGA
131 CTCGAGGGA
*
7890702 TCAACATTTCCAGTGGAGAGTCCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
*
7890767 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATTACATATGGAGTTGAATCAGCAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
7890832 CTCGAGGGA
131 CTCGAGGGA
*
7890841 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
*
7890906 ATGAGAAGAACTTGTTCAACCTTAGATCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
*
7890971 CTTGAGGGA
131 CTCGAGGGA
* * *
7890980 TCAACATTTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAGGGAGAATAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
* * *
7891045 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCGCATATAGAATTGAATCAGCAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
7891110 CTCGAGGGA
131 CTCGAGGGA
* * * *
7891119 CCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATAAGGGAGAAAAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
7891184 ATGAGAAGAACTTGTTCAACCTTAGCT
66 ATGAGAAGAACTTGTTCAACCTTAGCT
7891211 TGTTTCCATC
Statistics
Matches: 485, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
139 485 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (139 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
CTCGAGGGA
Found at i:7890922 original size:20 final size:19
Alignment explanation
Indices: 7890860--7890923 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
7890850 CCAGTGGAGA
7890860 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* * *
7890879 CATCCGATGAAGGAGAAGAA--
1 -GTTC-AT-AATGAGAAGAACT
7890899 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
7890919 GTTCA
1 GTTCA
7890924 ACCTTAGATC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 10 0.30
18 2 0.06
19 2 0.06
20 7 0.21
21 2 0.06
22 10 0.30
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.23
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:7895032 original size:14 final size:14
Alignment explanation
Indices: 7895013--7895042 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7895003 AACTTTTATT
7895013 TTATTTTATCTTTA
1 TTATTTTATCTTTA
*
7895027 TTATTTTATTTTTA
1 TTATTTTATCTTTA
7895041 TT
1 TT
7895043 TCTACTAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTATTTTATCTTTA
Found at i:7895042 original size:107 final size:107
Alignment explanation
Indices: 7894923--7895147 Score: 337
Period size: 107 Copynumber: 2.1 Consensus size: 107
7894913 ATTTTTGTTT
*** *
7894923 TTTTATTTTTATTGCTACTAACCACTGACTATTGACTTTCATTTTATTTTTATTTCTAACATTAC
1 TTTTATTTTTATTGCTACTAACCACTGACTACAAACTTTCATTTTATTTTTATTTCTAACACTAC
* *
7894988 TAACCGCTAATTATTAACTTTTATTTTATTTTA-TCTTTATTA
66 TAA-CGCTAACTACTAACTTTTATTTTATTTTATTCTTTATTA
* * *
7895030 TTTTATTTTTATTTCTACTAACCGCTGACTACAAACTTTTATTTTATTTTTATTTCTAACACTAC
1 TTTTATTTTTATTGCTACTAACCACTGACTACAAACTTTCATTTTATTTTTATTTCTAACACTAC
*
7895095 TAACGCTAACTACTAACTTTTATTTTATTTTATTTTTTATTA
66 TAACGCTAACTACTAACTTTTATTTTATTTTATTCTTTATTA
7895137 -TTTATTTTTAT
1 TTTTATTTTTAT
7895148 GTCATTAACT
Statistics
Matches: 107, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
106 38 0.36
107 69 0.64
ACGTcount: A:0.26, C:0.15, G:0.03, T:0.56
Consensus pattern (107 bp):
TTTTATTTTTATTGCTACTAACCACTGACTACAAACTTTCATTTTATTTTTATTTCTAACACTAC
TAACGCTAACTACTAACTTTTATTTTATTTTATTCTTTATTA
Found at i:7895072 original size:41 final size:43
Alignment explanation
Indices: 7895027--7895129 Score: 131
Period size: 46 Copynumber: 2.4 Consensus size: 43
7895017 TTTATCTTTA
* *
7895027 TTATTTTATTTTTATTTCT-ACTA-ACCGCTGACTACAAACTT
1 TTATTTTATTTTTATTTCTAACTACAACGCTAACTACAAACTT
*
7895068 TTATTTTATTTTTATTTCTAACACTACTAACGCTAACTACTAACTT
1 TTATTTTATTTTTATTTCT-A-ACTAC-AACGCTAACTACAAACTT
7895114 TTATTTTA-TTTTATTT
1 TTATTTTATTTTTATTT
7895130 TTTATTATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
41 19 0.35
44 4 0.07
45 8 0.15
46 23 0.43
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (43 bp):
TTATTTTATTTTTATTTCTAACTACAACGCTAACTACAAACTT
Found at i:7895231 original size:17 final size:17
Alignment explanation
Indices: 7895209--7895265 Score: 96
Period size: 17 Copynumber: 3.4 Consensus size: 17
7895199 GGCGGTAACA
7895209 CGCCTTGGGATACGACC
1 CGCCTTGGGATACGACC
*
7895226 CGCCTTGGGATACAACC
1 CGCCTTGGGATACGACC
*
7895243 TGCCTTGGGATACGACC
1 CGCCTTGGGATACGACC
7895260 CGCCTT
1 CGCCTT
7895266 ATTACGGTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (17 bp):
CGCCTTGGGATACGACC
Found at i:7895720 original size:29 final size:30
Alignment explanation
Indices: 7895671--7895730 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
7895661 TTAACTTAGA
7895671 TTTTCTTACTTTTATTAA-TTTGGCCCTTG
1 TTTTCTTACTTTTATTAATTTTGGCCCTTG
*
7895700 TTTTCTTA-TTTTATTTTATTTTGGCCCTTG
1 TTTTCTTACTTTTA-TTAATTTTGGCCCTTG
7895730 T
1 T
7895731 ACTATTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 5 0.18
29 11 0.39
30 12 0.43
ACGTcount: A:0.12, C:0.15, G:0.10, T:0.63
Consensus pattern (30 bp):
TTTTCTTACTTTTATTAATTTTGGCCCTTG
Found at i:7899104 original size:26 final size:27
Alignment explanation
Indices: 7899060--7899110 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7899050 CTATTCCTTT
* *
7899060 TATTTTGCTTTATTTTATTTGTTTTTC
1 TATTTTGCTTTATTATATTCGTTTTTC
7899087 TATTTT-CTTTATTATATTCGTTTT
1 TATTTTGCTTTATTATATTCGTTTT
7899111 CACTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.14, C:0.08, G:0.06, T:0.73
Consensus pattern (27 bp):
TATTTTGCTTTATTATATTCGTTTTTC
Found at i:7899118 original size:26 final size:25
Alignment explanation
Indices: 7899051--7899118 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 25
7899041 ATATCTTATC
* * *
7899051 TATTCCTTTTA-TTTTGCTTTATTT
1 TATTCGTTTTACTTTTTCTTTATTA
* *
7899075 TATTTGTTTTTCTATTTTCTTTATTA
1 TATTCGTTTTACT-TTTTCTTTATTA
7899101 TATTCGTTTTCACTTTTT
1 TATTCGTTTT-ACTTTTT
7899119 TCCTTCTAAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
24 8 0.24
25 1 0.03
26 23 0.68
27 2 0.06
ACGTcount: A:0.13, C:0.12, G:0.04, T:0.71
Consensus pattern (25 bp):
TATTCGTTTTACTTTTTCTTTATTA
Found at i:7909530 original size:48 final size:46
Alignment explanation
Indices: 7909425--7909562 Score: 206
Period size: 48 Copynumber: 2.9 Consensus size: 46
7909415 AATATTTCGC
* * *
7909425 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTG-AAAAAAAAACGT
1 TTAGGGTGAAAACCCGAAAGGGCG-CCTAAATTGAAAAAAAAAACGT
7909471 TTAGGGTGAAAACCCGAAAGGGCGCCTTAAATTGAAAAAAAAAAGCGT
1 TTAGGGTGAAAACCCGAAAGGGCGCC-TAAATTGAAAAAAAAAA-CGT
7909519 TTAGGGTGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAAAAA
1 TTAGGGTGAAAACCCGAAAGGGCG-CCTAAATTGAAAAAAAAAA
7909563 AGAAAAAATA
Statistics
Matches: 85, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
45 2 0.02
46 28 0.33
47 9 0.11
48 44 0.52
49 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.16
Consensus pattern (46 bp):
TTAGGGTGAAAACCCGAAAGGGCGCCTAAATTGAAAAAAAAAACGT
Found at i:7909579 original size:48 final size:48
Alignment explanation
Indices: 7909477--7909577 Score: 116
Period size: 48 Copynumber: 2.1 Consensus size: 48
7909467 ACGTTTAGGG
* * ** ***
7909477 TGAAAACCCGAAAGGGCGCCTTAAATTGAAAAAAAAAAGCGTTTAGGG
1 TGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAAAAAGAGTAAAAAA
7909525 TGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAAAAA-AG-AAAAAA
1 TGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAAAAAGAGTAAAAAA
7909571 TAGAAAA
1 T-GAAAA
7909578 ACAAACAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 2 0.04
47 6 0.13
48 37 0.82
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.13
Consensus pattern (48 bp):
TGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAAAAAGAGTAAAAAA
Found at i:7910522 original size:98 final size:98
Alignment explanation
Indices: 7910353--7910888 Score: 801
Period size: 106 Copynumber: 5.3 Consensus size: 98
7910343 TACCCATAGT
7910353 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
7910418 GGACCGCTGGTTGTCAATAAACAATTTCAGAGC
66 GGACCGCTGGTTGTCAATAAACAATTTCAGAGC
*
7910451 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
7910516 GGACCGCTGGTTGTCAATAAACAATTTC----C
66 GGACCGCTGGTTGTCAATAAACAATTTCAGAGC
7910545 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
7910610 GGACCGCTGGTTGTCAATAAAGAATTTCCCAATTTCAGAGC
66 GGACCGCTGGTTGTCAAT--A-AA-----CAATTTCAGAGC
* * *
7910651 CAATTTCAACTTCACAGCGAAGGATATTGGACTCTAGACAACGTAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
*
7910716 GGACCGCTGGTTGTCAACAAACAATTTCCCAATCTCGGAGC
66 GGACCGCTGGTTGTCAATAAACAATTT--C-A-----GAGC
* * * *
7910757 CAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGATAACGTAAGTTCAACTTCACGAAGAAG
1 CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
* *
7910822 GGACCGTTGGTTGTCAGTAAACAATTTCAGAGC
66 GGACCGCTGGTTGTCAATAAACAATTTCAGAGC
7910855 CAATTTCAACTTCACAACGAAGGATATTGGACTC
1 CAATTTCAACTTCACAACGAAGGATATTGGACTC
7910889 GAAACAACAC
Statistics
Matches: 405, Mismatches: 13, Indels: 40
0.88 0.03 0.09
Matches are distributed among these distances:
94 83 0.20
96 1 0.00
97 2 0.00
98 135 0.33
100 1 0.00
101 1 0.00
102 7 0.02
103 3 0.01
104 2 0.00
106 170 0.42
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (98 bp):
CAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
GGACCGCTGGTTGTCAATAAACAATTTCAGAGC
Found at i:7912703 original size:21 final size:23
Alignment explanation
Indices: 7912670--7912712 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
7912660 TTTTAATCCT
7912670 TTTATCATTTC-T-TTTTATTTG
1 TTTATCATTTCTTATTTTATTTG
7912691 TTTATC-TTATCTTATTTTATTT
1 TTTATCATT-TCTTATTTTATTT
7912713 TATTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.11
21 8 0.42
22 1 0.05
23 8 0.42
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTATCATTTCTTATTTTATTTG
Found at i:7912789 original size:5 final size:5
Alignment explanation
Indices: 7912691--7912772 Score: 146
Period size: 5 Copynumber: 16.4 Consensus size: 5
7912681 TTTTTATTTG
* *
7912691 TTTAT CTTAT CTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
7912741 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
7912773 GTTTTAATGT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 75 1.00
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:7913322 original size:26 final size:27
Alignment explanation
Indices: 7913283--7913336 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
7913273 TATCTATTCC
* *
7913283 TTTTATTTTGCTTTATTTTATTTGTTT
1 TTTTATTTTGCTTTATTATATTCGTTT
7913310 TTTTATTTT-CTTTATTATATTCGTTT
1 TTTTATTTTGCTTTATTATATTCGTTT
7913336 T
1 T
7913337 CACTTTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.76
Consensus pattern (27 bp):
TTTTATTTTGCTTTATTATATTCGTTT
Found at i:7913323 original size:9 final size:9
Alignment explanation
Indices: 7913284--7913325 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
7913274 ATCTATTCCT
7913284 TTTATTTTGC
1 TTTATTTT-C
*
7913294 TTTATTTTA
1 TTTATTTTC
*
7913303 TTTGTTTT-
1 TTTATTTTC
7913311 TTTATTTTC
1 TTTATTTTC
7913320 TTTATT
1 TTTATT
7913326 ATATTCGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
8 7 0.25
9 13 0.46
10 8 0.29
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (9 bp):
TTTATTTTC
Found at i:7914121 original size:16 final size:16
Alignment explanation
Indices: 7914100--7914131 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7914090 TTTGCAAAGC
7914100 CATTGATCAAGCAAGA
1 CATTGATCAAGCAAGA
7914116 CATTGATCAAGCAAGA
1 CATTGATCAAGCAAGA
7914132 TTTCAAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (16 bp):
CATTGATCAAGCAAGA
Found at i:7917330 original size:23 final size:23
Alignment explanation
Indices: 7917302--7917347 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7917292 AATTATCTTT
*
7917302 TAAATTTTATAAAAAATTATATA
1 TAAATTTTATAAAAAAGTATATA
*
7917325 TAAATTTTATTAAAAAGTATATA
1 TAAATTTTATAAAAAAGTATATA
7917348 AATTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAATTTTATAAAAAAGTATATA
Found at i:7918840 original size:17 final size:17
Alignment explanation
Indices: 7918818--7918873 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
7918808 GTTTTAATAG
7918818 TTTAATAATATTATTAT
1 TTTAATAATATTATTAT
*
7918835 TTTAATAAGTAATTACTAT
1 TTTAATAA-T-ATTATTAT
*
7918854 ACTTAATAATA-TATTAT
1 -TTTAATAATATTATTAT
7918871 TTT
1 TTT
7918874 TATTTTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
16 2 0.06
17 13 0.41
18 2 0.06
19 8 0.25
20 7 0.22
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (17 bp):
TTTAATAATATTATTAT
Found at i:7918893 original size:30 final size:28
Alignment explanation
Indices: 7918859--7918935 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 28
7918849 ACTATACTTA
7918859 ATAATATATTATTTTTATTTTAATATAAT
1 ATAATATATTATTTTTATTTTAATA-AAT
7918888 -T-ATA-A-TATTTTTATTTTAATAAAAT
1 ATAATATATTATTTTTATTTTAAT-AAAT
7918913 ATAATAATATTAATATTTTATTT
1 ATAAT-ATATT-AT-TTTTATTT
7918936 AAAATTATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
25 18 0.45
26 3 0.08
27 5 0.12
28 2 0.05
29 1 0.03
30 1 0.03
31 2 0.05
32 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATAATATATTATTTTTATTTTAATAAAT
Found at i:7918896 original size:25 final size:24
Alignment explanation
Indices: 7918859--7918918 Score: 93
Period size: 25 Copynumber: 2.5 Consensus size: 24
7918849 ACTATACTTA
*
7918859 ATAATATATTATTTTTATTTTAAT
1 ATAATATAATATTTTTATTTTAAT
7918883 ATAATTATAATATTTTTATTTTAAT
1 ATAA-TATAATATTTTTATTTTAAT
*
7918908 AAAATATAATA
1 ATAATATAATA
7918919 ATATTAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 11 0.33
25 22 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
ATAATATAATATTTTTATTTTAAT
Found at i:7918966 original size:14 final size:14
Alignment explanation
Indices: 7918899--7918969 Score: 58
Period size: 14 Copynumber: 5.3 Consensus size: 14
7918889 ATAATATTTT
7918899 TATTTTAATAA-AA
1 TATTTTAATAATAA
** *
7918912 TATAATAATATTAA
1 TATTTTAATAATAA
*
7918926 TATTTT-AT-TTAA
1 TATTTTAATAATAA
* * *
7918938 AATTATAAAAATAA
1 TATTTTAATAATAA
7918952 TATTTTAATAATAA
1 TATTTTAATAATAA
7918966 TATT
1 TATT
7918970 GACATAAATA
Statistics
Matches: 43, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
12 8 0.19
13 11 0.26
14 24 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATTTTAATAATAA
Found at i:7919190 original size:14 final size:14
Alignment explanation
Indices: 7919173--7919222 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
7919163 AACATTATTT
* *
7919173 ATTTTACAGAATTC
1 ATTTTACAAAATTA
*
7919187 ATTTTTCAAAATTA
1 ATTTTACAAAATTA
*
7919201 ATTTTCCAAAATTA
1 ATTTTACAAAATTA
7919215 ATTTTACA
1 ATTTTACA
7919223 TGAAACAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTTTACAAAATTA
Found at i:7919577 original size:20 final size:20
Alignment explanation
Indices: 7919552--7919591 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7919542 GCATGACTCG
*
7919552 TTTCATCATATAAACATAAA
1 TTTCATCACATAAACATAAA
* *
7919572 TTTCATGACATTAACATAAA
1 TTTCATCACATAAACATAAA
7919592 ATTTACCACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (20 bp):
TTTCATCACATAAACATAAA
Found at i:7926338 original size:14 final size:14
Alignment explanation
Indices: 7926319--7926347 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7926309 ATAAGAAAGA
7926319 TTCTGAATAGATAT
1 TTCTGAATAGATAT
7926333 TTCTGAATAGATAT
1 TTCTGAATAGATAT
7926347 T
1 T
7926348 ACTTTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (14 bp):
TTCTGAATAGATAT
Found at i:7926979 original size:25 final size:26
Alignment explanation
Indices: 7926930--7926985 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
7926920 TTACAACTCG
* *
7926930 GATTTGATTTAAAAAAAATTTGAGTT
1 GATTTGATTTAAAAAAAATTCGAGTC
* *
7926956 GATTTGATTT-TATAAAATTCGAGTC
1 GATTTGATTTAAAAAAAATTCGAGTC
7926981 GATTT
1 GATTT
7926986 TTGAGTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.45
Consensus pattern (26 bp):
GATTTGATTTAAAAAAAATTCGAGTC
Found at i:7929954 original size:15 final size:15
Alignment explanation
Indices: 7929942--7929971 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7929932 TAAATGGACA
7929942 GATGGCTAATGGAAG
1 GATGGCTAATGGAAG
7929957 GATGGCTAATGGAAG
1 GATGGCTAATGGAAG
7929972 AAAAAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.40, T:0.20
Consensus pattern (15 bp):
GATGGCTAATGGAAG
Found at i:7930434 original size:21 final size:19
Alignment explanation
Indices: 7930404--7930448 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
7930394 GTATATAAAA
*
7930404 TATATAGTGTGTGAATGCG
1 TATATAGTGTGTGAAAGCG
7930423 TATATAGTGTGTGAAAGCG
1 TATATAGTGTGTGAAAGCG
7930442 TATATAG
1 TATATAG
7930449 AGTATGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.36
Consensus pattern (19 bp):
TATATAGTGTGTGAAAGCG
Found at i:7932255 original size:19 final size:19
Alignment explanation
Indices: 7932231--7932278 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
7932221 ATAAGAAGCA
7932231 AGGAAAGTGATGTTACCTG
1 AGGAAAGTGATGTTACCTG
7932250 AGGAAAGTGATGTTACCTG
1 AGGAAAGTGATGTTACCTG
*
7932269 AGGAGAGTGA
1 AGGAAAGTGA
7932279 AGGGAGCAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.35, T:0.23
Consensus pattern (19 bp):
AGGAAAGTGATGTTACCTG
Found at i:7938260 original size:30 final size:29
Alignment explanation
Indices: 7938226--7938334 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 29
7938216 TTAAAATTAC
7938226 AAGGACTAAAATGAGAAAAACAATAACTTA
1 AAGGACTAAAAT-AGAAAAACAATAACTTA
7938256 AAGGA-TCAAAATAGCAAAAACCAA-AACTTA
1 AAGGACT-AAAATAG-AAAAA-CAATAACTTA
*
7938286 AAGGACTAAAATAGAAAAA-ATTGAAGCTTA
1 AAGGACTAAAATAGAAAAACAAT-AA-CTTA
7938316 AAGGACTAAAATAGAAAAA
1 AAGGACTAAAATAGAAAAA
7938335 TCGAAATTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
27 1 0.01
29 10 0.14
30 56 0.79
31 4 0.06
ACGTcount: A:0.61, C:0.10, G:0.14, T:0.16
Consensus pattern (29 bp):
AAGGACTAAAATAGAAAAACAATAACTTA
Found at i:7938305 original size:60 final size:58
Alignment explanation
Indices: 7938218--7938355 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 58
7938208 GTAAATATTT
7938218 AAAATTACAAGGACTAAAATGAGAAAAACAAT-AA-CTTAAAGGA-TCAAAATAGCAAAAACC
1 AAAATTA-AAGGACTAAAATG-GAAAAA-AATGAAGCTTAAAGGACT-AAAATAG-AAAAACC
* * *
7938278 AAAACTTAAAGGACTAAAATAGAAAAAATTGAAGCTTAAAGGACTAAAATAGAAAAATCG
1 AAAA-TTAAAGGACTAAAATGGAAAAAAATGAAGCTTAAAGGACTAAAATAGAAAAA-CC
* *
7938338 AAATTTAAGGGACTAAAA
1 AAAATTAAAGGACTAAAA
7938356 CAGTATTAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
58 2 0.03
59 26 0.38
60 36 0.53
61 4 0.06
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.17
Consensus pattern (58 bp):
AAAATTAAAGGACTAAAATGGAAAAAAATGAAGCTTAAAGGACTAAAATAGAAAAACC
Found at i:7938345 original size:29 final size:30
Alignment explanation
Indices: 7938218--7938355 Score: 133
Period size: 30 Copynumber: 4.6 Consensus size: 30
7938208 GTAAATATTT
7938218 AAAA-TTACAAGGACTAAAAT-GAGAAAAA-C
1 AAAACTTA-AAGGACTAAAATAGA-AAAAATC
* *
7938247 AATAACTTAAAGGA-TCAAAATAGCAAAAACC
1 AA-AACTTAAAGGACT-AAAATAGAAAAAATC
*
7938278 AAAACTTAAAGGACTAAAATAGAAAAAATT
1 AAAACTTAAAGGACTAAAATAGAAAAAATC
* *
7938308 GAAGCTTAAAGGACTAAAATAG-AAAAATC
1 AAAACTTAAAGGACTAAAATAGAAAAAATC
* * *
7938337 GAAATTTAAGGGACTAAAA
1 AAAACTTAAAGGACTAAAA
7938356 CAGTATTAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
29 25 0.27
30 60 0.65
31 8 0.09
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.17
Consensus pattern (30 bp):
AAAACTTAAAGGACTAAAATAGAAAAAATC
Found at i:7953419 original size:28 final size:29
Alignment explanation
Indices: 7953387--7953442 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
7953377 AAACACAAAG
* * *
7953387 AAAGAGAGAAGAGAAAGAA-GAAGAAAAA
1 AAAGAGACAAAAGAAAGAATAAAGAAAAA
7953415 AAAGAGACAAAAGAAAGAATAAAGAAAA
1 AAAGAGACAAAAGAAAGAATAAAGAAAA
7953443 CAGATCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.02
Consensus pattern (29 bp):
AAAGAGACAAAAGAAAGAATAAAGAAAAA
Found at i:7955529 original size:112 final size:108
Alignment explanation
Indices: 7955397--7955703 Score: 393
Period size: 112 Copynumber: 2.8 Consensus size: 108
7955387 TTTTTTAAAA
* *
7955397 AAACTAATCCTGATTTTCAGGGGTATCTTGATGATGATTTCCAATGAATTTTTAAAAGAAGCTAA
1 AAACTAA-GCTGATTTTCAGGGGTTTCTTGATGATGATTTCCAATGAATTTTTAAAAGAAGCTAA
* * *
7955462 GCCTAATATTTAGGGGTTTCTTAATTTTTTTTCAAATGAGTTTTTAG
65 GCCTAATTTTTAGGGGTTTCTTAA-TATTTTT-AAATGA-ATTTTAG
* * *
7955509 AAACTAAGCTTGATTTTCAGGGGTTTCTTGATGTTGAGTTCCAATGAATTTTTAAAAGAATCTAA
1 AAACTAAGC-TGATTTTCAGGGGTTTCTTGATGATGATTTCCAATGAATTTTTAAAAGAAGCTAA
* ** *
7955574 GCCTAGTTTTTATTGGTTTCTTGATATTTTTAAATGAATTTTAG
65 GCCTAATTTTTAGGGGTTTCTTAATATTTTTAAATGAATTTTAG
* * *
7955618 AAATTAAGACTGATTTTCAGGGGTTTCTTGATGATTATTTCCAAAT-AATTTTT-AAAGAAGCCA
1 AAACTAAG-CTGATTTTCAGGGGTTTCTTGATGATGATTTCC-AATGAATTTTTAAAAGAAGCTA
*
7955681 AGCCTAATTTTTAGGAGTTTCTT
64 AGCCTAATTTTTAGGGGTTTCTT
7955704 TTCAAATGAG
Statistics
Matches: 170, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
108 27 0.16
109 49 0.29
110 10 0.06
111 7 0.04
112 77 0.45
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (108 bp):
AAACTAAGCTGATTTTCAGGGGTTTCTTGATGATGATTTCCAATGAATTTTTAAAAGAAGCTAAG
CCTAATTTTTAGGGGTTTCTTAATATTTTTAAATGAATTTTAG
Found at i:7955592 original size:58 final size:58
Alignment explanation
Indices: 7955388--7955703 Score: 218
Period size: 58 Copynumber: 5.7 Consensus size: 58
7955378 CAAAAGAATT
* * * *
7955388 TTTTTAAAA-AAACTAATCCT-GATTTTCAGGGGTATCTTGATGATGATTTCCAATGAA
1 TTTTTAAAAGAAACTAAGCCTAG-TTTTTAGGGGTTTCTTGATGTTGATTTCCAATGAA
* * * * ** * *
7955445 TTTTTAAAAGAAGCTAAGCCTAATATTTAGGGGTTTCTTAAT-TTTTTTTCAAATGAG
1 TTTTTAAAAGAAACTAAGCCTAGTTTTTAGGGGTTTCTTGATGTTGATTTCCAATGAA
* * *
7955502 TTTTT---AGAAACTAAG-CTTGATTTTCAGGGGTTTCTTGATGTTGAGTTCCAATGAA
1 TTTTTAAAAGAAACTAAGCCTAG-TTTTTAGGGGTTTCTTGATGTTGATTTCCAATGAA
* ** * *
7955557 TTTTTAAAAGAATCTAAGCCTAGTTTTTATTGGTTTCTTGATATT--TTT-AAATGAA
1 TTTTTAAAAGAAACTAAGCCTAGTTTTTAGGGGTTTCTTGATGTTGATTTCCAATGAA
* * *
7955612 -TTTT---AGAAATTAAGACT-GATTTTCAGGGGTTTCTTGATGATT-ATTTCCAAAT-AA
1 TTTTTAAAAGAAACTAAGCCTAG-TTTTTAGGGGTTTCTTGATG-TTGATTTCC-AATGAA
* * * *
7955666 TTTTT-AAAGAAGCCAAGCCTAATTTTTAGGAGTTTCTT
1 TTTTTAAAAGAAACTAAGCCTAGTTTTTAGGGGTTTCTT
7955704 TTCAAATGAG
Statistics
Matches: 196, Mismatches: 46, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
50 1 0.01
51 26 0.13
52 2 0.01
53 5 0.03
54 31 0.16
55 28 0.14
56 2 0.01
57 47 0.24
58 51 0.26
59 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.43
Consensus pattern (58 bp):
TTTTTAAAAGAAACTAAGCCTAGTTTTTAGGGGTTTCTTGATGTTGATTTCCAATGAA
Found at i:7955958 original size:42 final size:44
Alignment explanation
Indices: 7955866--7955962 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 44
7955856 TCTTGTTGAG
* *
7955866 TAAGTCCTTC--GGTACATCAATAAGTCTTTCGAACATGATGCT
1 TAAGTCCTTCGGGGTACATCAATAAGTCTTTCGAACAAGATGCA
* * *
7955908 TAAATCCTTCGGGGT-CATCTATAAGTCTTTCGAGCAAGATG-A
1 TAAGTCCTTCGGGGTACATCAATAAGTCTTTCGAACAAGATGCA
7955950 TAAGTCCTTCGGG
1 TAAGTCCTTCGGG
7955963 CCATCCATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 21 0.45
43 23 0.49
44 3 0.06
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (44 bp):
TAAGTCCTTCGGGGTACATCAATAAGTCTTTCGAACAAGATGCA
Found at i:7956432 original size:38 final size:38
Alignment explanation
Indices: 7956057--7956421 Score: 525
Period size: 38 Copynumber: 9.5 Consensus size: 38
7956047 AGGGATCAAC
* **
7956057 ATCTCGCTTGAGATAGTTTCACTCTAAGTAGAAGATTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
* *
7956095 ATCTCGATTGAGATAGTTTCACTTGAAACAGAAGATTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
7956133 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGA-TTT
*
7956172 ATCTTGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
* *
7956210 ATCTCGCTTGATATAGTTTCACTCGAAACTGAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGA-TTT
*
7956249 ATCTCGCTTGAGATAGTTTCACTCGAAGCAGAAGATTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
*
7956287 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGA-TTT
*
7956326 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGA-TTT
* * *
7956365 ATCTTTG-TTGATATAGTTTCACTCAAAACAGAAGATTT
1 ATC-TCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
** *
7956403 ATCTCATTTGAGATTGTTT
1 ATCTCGCTTGAGATAGTTT
7956422 TTCTTAAAAC
Statistics
Matches: 298, Mismatches: 24, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
37 1 0.00
38 153 0.51
39 142 0.48
40 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (38 bp):
ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
Found at i:7956434 original size:77 final size:77
Alignment explanation
Indices: 7956057--7956421 Score: 538
Period size: 77 Copynumber: 4.8 Consensus size: 77
7956047 AGGGATCAAC
* ** * *
7956057 ATCTCGCTTGAGATAGTTTCACTCTAAGTAGAAGA-TTTATCTCGATTGAGATAGTTTCACTTGA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
7956121 AACAGAAGATTT
66 AACAGAAGATTT
*
7956133 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTTGCTTGAGATAGTTTCACTCGA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
7956198 AACAGAAGATTT
66 AACAGAAGATTT
* *
7956210 ATCTCGCTTGATATAGTTTCACTCGAAACTGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
*
7956275 AGCAGAAGATTT
66 AACAGAAGATTT
*
7956287 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
*
7956352 AACAAAAGATTTT
66 AACAGAAGA-TTT
* * * ** *
7956365 ATCTTTG-TTGATATAGTTTCACTCAAAACAGAAGA-TTTATCTCATTTGAGATTGTTT
1 ATC-TCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTT
7956422 TTCTTAAAAC
Statistics
Matches: 264, Mismatches: 22, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
76 32 0.12
77 199 0.75
78 31 0.12
79 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (77 bp):
ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGA
AACAGAAGATTT
Found at i:7956809 original size:59 final size:60
Alignment explanation
Indices: 7956684--7956812 Score: 174
Period size: 59 Copynumber: 2.2 Consensus size: 60
7956674 CACGATGTTT
* * * *
7956684 TCAACATTTCCTTTGCTCGATTCATAACACTTCGAATCAACAACGCCCCACCAGAGGGGT
1 TCAACATTTCCTTTACTCGATTCACAACACTTCGAATCAACAACGCACCACCAGAGGGGA
* *
7956744 TC-ACATTTCCTTTACTCGATTCACAACACTTCGAATCAACAATGCATCACTC-GA-GGGA
1 TCAACATTTCCTTTACTCGATTCACAACACTTCGAATCAACAACGCACCAC-CAGAGGGGA
7956802 TCAACATTTCC
1 TCAACATTTCC
7956813 AGTGGAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
58 5 0.08
59 53 0.87
60 3 0.05
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (60 bp):
TCAACATTTCCTTTACTCGATTCACAACACTTCGAATCAACAACGCACCACCAGAGGGGA
Found at i:7957202 original size:19 final size:20
Alignment explanation
Indices: 7957171--7957210 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7957161 CCTCAATCCT
*
7957171 AAACCCTAAAATATAACCAA
1 AAACCCTAAAATAGAACCAA
7957191 AAACCC-AAAATAGAACCAA
1 AAACCCTAAAATAGAACCAA
7957210 A
1 A
7957211 TTCAAAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.62, C:0.25, G:0.03, T:0.10
Consensus pattern (20 bp):
AAACCCTAAAATAGAACCAA
Found at i:7960348 original size:22 final size:22
Alignment explanation
Indices: 7960323--7960368 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7960313 TGTTGAACGC
7960323 AATTTTGCATTGTTTTCAACAT
1 AATTTTGCATTGTTTTCAACAT
*
7960345 AATTTTGCATTGTTTTGAACAT
1 AATTTTGCATTGTTTTCAACAT
7960367 AA
1 AA
7960369 GCAATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (22 bp):
AATTTTGCATTGTTTTCAACAT
Found at i:7962084 original size:18 final size:17
Alignment explanation
Indices: 7962056--7962089 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
7962046 AATATCAAGA
7962056 TGATTATGCGTTTATTG
1 TGATTATGCGTTTATTG
7962073 TGATTCATGCGTTTATT
1 TGATT-ATGCGTTTATT
7962090 AATTGACCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (17 bp):
TGATTATGCGTTTATTG
Found at i:7966091 original size:2 final size:2
Alignment explanation
Indices: 7966084--7966111 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7966074 TATCAGATAG
7966084 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7966112 GCATTAACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7969775 original size:28 final size:28
Alignment explanation
Indices: 7969735--7969817 Score: 166
Period size: 28 Copynumber: 3.0 Consensus size: 28
7969725 TTTCATAACT
7969735 TTTTGCTTCCTAATTGTCCGTCGTCTCA
1 TTTTGCTTCCTAATTGTCCGTCGTCTCA
7969763 TTTTGCTTCCTAATTGTCCGTCGTCTCA
1 TTTTGCTTCCTAATTGTCCGTCGTCTCA
7969791 TTTTGCTTCCTAATTGTCCGTCGTCTC
1 TTTTGCTTCCTAATTGTCCGTCGTCTC
7969818 TCGAGTGAGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.10, C:0.29, G:0.14, T:0.47
Consensus pattern (28 bp):
TTTTGCTTCCTAATTGTCCGTCGTCTCA
Found at i:7970642 original size:13 final size:12
Alignment explanation
Indices: 7970612--7970645 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
7970602 ACAATAAAGT
*
7970612 GAAATAAAAAAT
1 GAAATAAAAAAA
7970624 GAAATAAATAAAA
1 GAAATAAA-AAAA
7970637 GAAATAAAA
1 GAAATAAAA
7970646 GAAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (12 bp):
GAAATAAAAAAA
Found at i:7979162 original size:49 final size:44
Alignment explanation
Indices: 7979109--7979218 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 44
7979099 GGAGTCATGA
* *
7979109 GTGTGATGGTGGTGCTATTACATGATATTGCACACGTAACCTGACGTCT
1 GTGTGATGGTGGTGCTATGACA-CATA--GCAC-C-TAACCTGACGTCT
* * *
7979158 GTGTGACGGTGGTGCGT-TGGCACCTAGCACCTAACCTGACGTCT
1 GTGTGATGGTGGTGC-TATGACACATAGCACCTAACCTGACGTCT
7979202 GTGTGATGGTGGTGCTA
1 GTGTGATGGTGGTGCTA
7979219 AAGTACAAGG
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.02
44 27 0.51
45 1 0.02
46 4 0.08
48 2 0.04
49 17 0.32
50 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.30
Consensus pattern (44 bp):
GTGTGATGGTGGTGCTATGACACATAGCACCTAACCTGACGTCT
Found at i:7980581 original size:90 final size:90
Alignment explanation
Indices: 7980470--7980644 Score: 305
Period size: 90 Copynumber: 1.9 Consensus size: 90
7980460 GTGAAATTGC
* *
7980470 AATACCATAAATAAGGTGGTATTGTAGTAGTAGTTTGTGTACTAAAGCACTATGTATGTAATTGG
1 AATACCATAAATAAGGTGGTATTATAGTAGTAATTTGTGTACTAAAGCACTATGTATGTAATTGG
*
7980535 CATACTTGGTGTATGTTGGTGTTGT
66 CATACTTGGTGTATGATGGTGTTGT
* *
7980560 AATACTATAAATAAGGTGGTATTATAGTAGTAATTTGTGTACTGAAGCACTATGTATGTAATTGG
1 AATACCATAAATAAGGTGGTATTATAGTAGTAATTTGTGTACTAAAGCACTATGTATGTAATTGG
7980625 CATACTTGGTGTATGATGGT
66 CATACTTGGTGTATGATGGT
7980645 TATCAATTGA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (90 bp):
AATACCATAAATAAGGTGGTATTATAGTAGTAATTTGTGTACTAAAGCACTATGTATGTAATTGG
CATACTTGGTGTATGATGGTGTTGT
Found at i:7990881 original size:18 final size:19
Alignment explanation
Indices: 7990853--7990890 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
7990843 AATAAAATAA
7990853 AAATTACAAATAATAAAGG
1 AAATTACAAATAATAAAGG
*
7990872 AAATTA-AAATATTAAAGG
1 AAATTACAAATAATAAAGG
7990890 A
1 A
7990891 TCTAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (19 bp):
AAATTACAAATAATAAAGG
Found at i:7990905 original size:18 final size:17
Alignment explanation
Indices: 7990854--7990905 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
7990844 ATAAAATAAA
7990854 AATTACAAATAATAAAGG
1 AATTA-AAATAATAAAGG
*
7990872 AAATTAAAATATTAAAGG
1 -AATTAAAATAATAAAGG
7990890 -ATCTAAATATAATAAA
1 AAT-TAAA-ATAATAAA
7990906 ATTTAAATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 2 0.07
17 4 0.14
18 18 0.62
19 5 0.17
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.27
Consensus pattern (17 bp):
AATTAAAATAATAAAGG
Found at i:7992047 original size:30 final size:30
Alignment explanation
Indices: 7992011--7992067 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
7992001 CAGGAAACAC
7992011 GGGATGGTGAG-ATGGTAGGTGTTGAAATAT
1 GGGATGGTG-GCATGGTAGGTGTTGAAATAT
7992041 GGGATGGTGGCATGGTAGGTGTTGAAA
1 GGGATGGTGGCATGGTAGGTGTTGAAA
7992068 ATTTGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.25, C:0.02, G:0.46, T:0.28
Consensus pattern (30 bp):
GGGATGGTGGCATGGTAGGTGTTGAAATAT
Found at i:7992634 original size:42 final size:41
Alignment explanation
Indices: 7992521--7992634 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 41
7992511 GCCTGAAGGT
* * * * * *
7992521 CTTATGGATGGCCCGAATGTCTTATTATCTTGCTTGAAAGA
1 CTTATAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
* * *
7992562 CTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGA
*
7992604 CTTACT-GCTGGCCCGAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCGAAGGACTTA-TCATCA
7992635 AGAAACACTT
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
41 19 0.33
42 37 0.65
43 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
Found at i:7992987 original size:39 final size:39
Alignment explanation
Indices: 7992667--7992985 Score: 521
Period size: 39 Copynumber: 8.2 Consensus size: 39
7992657 TAGTTTCTTT
**
7992667 AAATCTTTTGTTTCGAACGAAACTATCTCAAGCGAGATA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
*
7992706 AAATCTTTTGTTTCGAGCGAAACTATCTCAAGCGAGATA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
* * * *
7992745 AAATCTTCTGTTTCGAGGGAAACTATTTCGAGCGAGACA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
* *
7992784 AAATCTTTTGTTTTGAGGGAAACTATCTCAAGCGAGACA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
*
7992823 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
7992862 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
*
7992901 AAATCTTTTGTTTCGAGGGAAACTATCTCTAGCGAGATA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
* *
7992940 AAATCTTCTGTTTTGAGGGAAACTATCTCAAGCGAGATA
1 AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
7992979 AAATCTT
1 AAATCTT
7992986 CTTTAAAAAC
Statistics
Matches: 264, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 264 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (39 bp):
AAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATA
Found at i:7993219 original size:75 final size:75
Alignment explanation
Indices: 7992990--7993227 Score: 354
Period size: 76 Copynumber: 3.1 Consensus size: 75
7992980 AATCTTCTTT
* * * *
7992990 AAAAACAATCTTGAGTGAAATGAAATGCCTTCTTTTGAATAAAAACCGTCTCAAGCGAGACAAAT
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTTG-AGAAAAACTGTCTCAAGTGAGACAAAT
7993055 CTTGTTTTAAG
65 CTTGTTTTAAG
* * *
7993066 AAAAACAATCTTGAGTGAAAT-AAATCTTCTTGTTTCGAGTAAAAACTGTCTCAAGTGAGACAAA
1 AAAAACAATCTTGAGTGAAATGAAAT-GTCTTCTTTTGAG-AAAAACTGTCTCAAGTGAGACAAA
7993130 TCTTGTTTTAAG
64 TCTTGTTTTAAG
*
7993142 AAAAACAATCTTGAGTCAAATGAAATGTCTTCTTTTGAGAAAAACTGTCTCAAGTGAGACAAAGT
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTTGAGAAAAACTGTCTCAAGTGAGACAAA-T
7993207 C-TGTTTTAAG
65 CTTGTTTTAAG
7993217 AAAAACAATCT
1 AAAAACAATCT
7993228 CAAGTGAGAT
Statistics
Matches: 147, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
75 49 0.33
76 94 0.64
77 4 0.03
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (75 bp):
AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTTGAGAAAAACTGTCTCAAGTGAGACAAATC
TTGTTTTAAG
Found at i:7998437 original size:13 final size:13
Alignment explanation
Indices: 7998400--7998438 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
7998390 TATTTAATCC
*
7998400 TAATTAAAAAATA
1 TAATTACAAAATA
7998413 TAATTACAAAATA
1 TAATTACAAAATA
7998426 -AATTACATAAATA
1 TAATTACA-AAATA
7998439 CTAAAATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (13 bp):
TAATTACAAAATA
Found at i:7998623 original size:19 final size:20
Alignment explanation
Indices: 7998587--7998634 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
7998577 AAAATGTAAG
*
7998587 AAATTAAAATTTAGAAGG-T
1 AAATTAAAATTAAGAAGGAT
* *
7998606 AAATTAAGATTAATAAGGACT
1 AAATTAAAATTAAGAAGGA-T
7998627 AAATTAAA
1 AAATTAAA
7998635 GAAAAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 15 0.65
21 8 0.35
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.29
Consensus pattern (20 bp):
AAATTAAAATTAAGAAGGAT
Found at i:8004771 original size:9 final size:8
Alignment explanation
Indices: 8004745--8004769 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8004735 TTGTCATTAA
8004745 TCTTTTTT
1 TCTTTTTT
8004753 TCTTTTTT
1 TCTTTTTT
8004761 TCTTTTTT
1 TCTTTTTT
8004769 T
1 T
8004770 TCATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:8004779 original size:9 final size:9
Alignment explanation
Indices: 8004767--8004797 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8004757 TTTTTCTTTT
8004767 TTTTCATTA
1 TTTTCATTA
8004776 TTTTCATTA
1 TTTTCATTA
*
8004785 TTTTCATCA
1 TTTTCATTA
8004794 TTTT
1 TTTT
8004798 TTAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTCATTA
Found at i:8004779 original size:18 final size:18
Alignment explanation
Indices: 8004747--8004815 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
8004737 GTCATTAATC
*
8004747 TTTTTTTC-TTTTTTTCT
1 TTTTTTTCATTATTTTCT
*
8004764 TTTTTTTCATTATTTTCA
1 TTTTTTTCATTATTTTCT
* *
8004782 TTATTTTCATCATTTT-T
1 TTTTTTTCATTATTTTCT
8004799 TAATTTTTTCATT-TTTT
1 T--TTTTTTCATTATTTT
8004816 TAAAAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
17 9 0.21
18 25 0.60
19 8 0.19
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTTCATTATTTTCT
Found at i:8004816 original size:18 final size:17
Alignment explanation
Indices: 8004748--8004816 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
8004738 TCATTAATCT
*
8004748 TTTTTTC-TTTTTTTCTT
1 TTTTTTCATTTTTTT-TA
* *
8004765 TTTTTTCATTATTTTCA
1 TTTTTTCATTTTTTTTA
*
8004782 TTATTTTCATCATTTTTTAA
1 TT-TTTTCAT--TTTTTTTA
8004802 TTTTTTCATTTTTTT
1 TTTTTTCATTTTTTT
8004817 AAAAAAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
17 15 0.35
18 13 0.30
19 7 0.16
20 8 0.19
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTCATTTTTTTTA
Found at i:8005183 original size:74 final size:74
Alignment explanation
Indices: 8005074--8005266 Score: 218
Period size: 72 Copynumber: 2.6 Consensus size: 74
8005064 AAACCTTTGA
* *
8005074 AAATCAAACTTAG-TTGC-TTCAAAATATCATTTGAAAACATTATATCAGTCATATAATCATCAA
1 AAATCAAACTTAGCTT-CTTTAAAAAT-TCATTTGAAAACATTATATCAGTCAAATAATCATCAA
8005137 GAAACATCTA-
64 GAAACATCTAC
* * * * *
8005147 AAATCAGACTTAGCTTCTTTAAAAAATTTATTTGAAAATCA-TAGAT--GTTAAATTATCATCAA
1 AAATCAAACTTAGCTTCTTT-AAAAATTCATTTGAAAA-CATTATATCAGTCAAATAATCATCAA
*
8005209 GAAACCTCTAC
64 GAAACATCTAC
* *
8005220 AAATCAAACTTAGCTTCTTTAAAAATTCATTTGAAAATATCATATCA
1 AAATCAAACTTAGCTTCTTTAAAAATTCATTTGAAAACATTATATCA
8005267 ATCGGGGAAC
Statistics
Matches: 99, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
71 1 0.01
72 41 0.41
73 32 0.32
74 18 0.18
75 7 0.07
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.34
Consensus pattern (74 bp):
AAATCAAACTTAGCTTCTTTAAAAATTCATTTGAAAACATTATATCAGTCAAATAATCATCAAGA
AACATCTAC
Found at i:8010092 original size:2 final size:2
Alignment explanation
Indices: 8010085--8010113 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8010075 ATTGTTGTAC
8010085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8010114 CATCCCTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8010310 original size:29 final size:29
Alignment explanation
Indices: 8010256--8010312 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
8010246 CCATTATTCT
* * *
8010256 TTTACTCAACATTGTTTAACCTTTCATCC
1 TTTACTCAACAGTGCTTAACCATTCATCC
*
8010285 TTTACTCAACAGTGCTTACCCATTCATC
1 TTTACTCAACAGTGCTTAACCATTCATC
8010313 TAACCAGCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.05, T:0.40
Consensus pattern (29 bp):
TTTACTCAACAGTGCTTAACCATTCATCC
Found at i:8010507 original size:81 final size:81
Alignment explanation
Indices: 8010305--8010519 Score: 281
Period size: 81 Copynumber: 2.7 Consensus size: 81
8010295 AGTGCTTACC
** ** * * * *
8010305 CATTCATCTAACCAGCATAATTGACACGCTTCTGTCAATTACACAATTAGGCCATTGTCCTTTTA
1 CATTCATCTAACTGGCATAATTGACACATTTCTGTCAATTGCACAGTTAGGCCATTATCATTTTA
8010370 CTCAACACTATTTATT
66 CTCAACACTATTTATT
8010386 CATTCATCTAACTGGCATAATTGACACATTTCTGTCAATTGCACAGTTAGGCCATTATCATTTTA
1 CATTCATCTAACTGGCATAATTGACACATTTCTGTCAATTGCACAGTTAGGCCATTATCATTTTA
**
8010451 CTCAACGGTATTTATAT
66 CTCAACACTATTTAT-T
* * *
8010468 -GTTCATCTAACTGGCATAATTGACATC-TTTCTGTCAATTGCGCGGTTAGGCC
1 CATTCATCTAACTGGCATAATTGACA-CATTTCTGTCAATTGCACAGTTAGGCC
8010520 TTAAAGGCAC
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
81 117 0.98
82 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (81 bp):
CATTCATCTAACTGGCATAATTGACACATTTCTGTCAATTGCACAGTTAGGCCATTATCATTTTA
CTCAACACTATTTATT
Found at i:8010654 original size:68 final size:68
Alignment explanation
Indices: 8010469--8010656 Score: 270
Period size: 68 Copynumber: 2.8 Consensus size: 68
8010459 TATTTATATG
* * * * * *
8010469 TTCATCTAACTGGCATAATTGACATC-TTTCTGTCAATTGCGCGGTTAGGCCTTAAAGGCACTTA
1 TTCATCTAACTGGCATAATTGACA-CATTTCTATCAAATGCACAGTTAGGTCTCAAAGGCACTTA
8010533 GCCT
65 GCCT
* * *
8010537 TTCATCTAACTGGCATAAATGACACATTTTTTTCAAATGCACAGTTAGGTCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAGTTAGGTCTCAAAGGCACTTAG
8010602 CCT
66 CCT
*
8010605 TTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAATTAGGTCT
1 TTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAGTTAGGTCT
8010657 ATTAATCTTT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
67 1 0.01
68 106 0.99
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (68 bp):
TTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAGTTAGGTCTCAAAGGCACTTAG
CCT
Found at i:8010936 original size:59 final size:59
Alignment explanation
Indices: 8010871--8011144 Score: 403
Period size: 59 Copynumber: 4.7 Consensus size: 59
8010861 CACATTTCTC
* * *
8010871 ATATGGAATTTCATACACTTAGTAT-ACATTTCTTATCATTTTAGCACAC-AAGGTG-CCT
1 ATATGGAAATTCATACACTTAGTATGA-ATTCCTTATCATGTTAGCACACGAA-GTGCCCT
*
8010929 AATATGGAAATTTATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCT
1 -ATATGGAAATTCATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCT
* *
8010989 ATATGGAAATCCATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCT
* *
8011048 ATATGGAAATCCATACACTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCT
* *
8011107 ATATAGAAATTGATACACTTAGTATGAATTCCTT-TCAT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTATCAT
8011145 ACAATTAGTA
Statistics
Matches: 200, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
58 4 0.02
59 190 0.95
60 6 0.03
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (59 bp):
ATATGGAAATTCATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCT
Found at i:8011152 original size:24 final size:25
Alignment explanation
Indices: 8011119--8011169 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
8011109 ATAGAAATTG
*
8011119 ATACACTTAGTATGAATTCCTT-TC
1 ATACAATTAGTATGAATTCCTTATC
8011143 ATACAATTAGTATGAATTCCTTATC
1 ATACAATTAGTATGAATTCCTTATC
8011168 AT
1 AT
8011170 GTTAGCACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (25 bp):
ATACAATTAGTATGAATTCCTTATC
Found at i:8011199 original size:83 final size:84
Alignment explanation
Indices: 8011059--8011228 Score: 288
Period size: 83 Copynumber: 2.0 Consensus size: 84
8011049 TATGGAAATC
* * *
8011059 CATACACTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATTGATACA
1 CATACAATTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTACATAGAAATTCATACA
8011124 CTTAGTATGAATTCCTT-T
66 CTTAGTATGAATTCCTTAT
* *
8011142 CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATTCATACA
1 CATACAATTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTACATAGAAATTCATACA
8011207 CTTAGTATGAATTCCTTAT
66 CTTAGTATGAATTCCTTAT
8011226 CAT
1 CAT
8011229 GTTAGCACAC
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 77 0.95
84 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.34
Consensus pattern (84 bp):
CATACAATTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTACATAGAAATTCATACA
CTTAGTATGAATTCCTTAT
Found at i:8011232 original size:59 final size:59
Alignment explanation
Indices: 8011142--8011706 Score: 934
Period size: 59 Copynumber: 9.6 Consensus size: 59
8011132 GAATTCCTTT
* * *
8011142 CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATT
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
*
8011201 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAGATC
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
** *
8011260 CATACACTTAGTATGAATTCCTTATCATGTTAGCACATAAAGTGACCTATATGGAAATC
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
8011319 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
* *
8011378 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTACCCTATATGAAAATC
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
* * *
8011437 CATACACTTACTATGAATTCCTTATCATGTTAGCACATGAAGTACCCTATATGGAAATC
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
* * *
8011496 CATACATTTAGTATGAATTCCATATCATGTTAGCACACGAAGTGCCCTATATGGAAATT
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
* *
8011555 CATACACTTAGTATGAATTCCTTATCATGTTAGCACATGAAGTGCCCTATATATGGAAATT
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCC--TATATGGAAATC
*
8011616 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATT
1 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
*
8011675 TATACACTTAGTATGAATTCCTTATCAT-TTAG
1 CATACACTTAGTATGAATTCCTTATCATGTTAG
8011707 GAATCACCAT
Statistics
Matches: 477, Mismatches: 27, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
58 4 0.01
59 415 0.87
61 58 0.12
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (59 bp):
CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATC
Found at i:8011265 original size:142 final size:143
Alignment explanation
Indices: 8011000--8011287 Score: 488
Period size: 142 Copynumber: 2.0 Consensus size: 143
8010990 TATGGAAATC
* *
8011000 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACA
1 CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTACATGGAAATCCATACA
**
8011065 CTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATTGATACACTTAGT
66 CTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGT
8011130 ATGAATTCCTT-T
131 ATGAATTCCTTAT
* *
8011142 CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATTCATACA
1 CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTACATGGAAATCCATACA
* * *
8011207 CTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAGATCCATACACTTAGT
66 CTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGT
8011272 ATGAATTCCTTAT
131 ATGAATTCCTTAT
8011285 CAT
1 CAT
8011288 GTTAGCACAT
Statistics
Matches: 136, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
142 132 0.97
143 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (143 bp):
CATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTACATGGAAATCCATACA
CTTAGTATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGT
ATGAATTCCTTAT
Found at i:8011296 original size:201 final size:202
Alignment explanation
Indices: 8010942--8011346 Score: 695
Period size: 201 Copynumber: 2.0 Consensus size: 202
8010932 ATGGAAATTT
* *
8010942 ATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACAC
1 ATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATCCATACAC
8011007 TTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACACTTAGTA
66 TTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACACTTAGTA
* * **
8011072 TGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATTGATACACTTAGTATGAATT
131 TGAATTCCTTATCATGCTAGCACACAAAGTGACCTATATAGAAATCCATACACTTAGTATGAATT
8011137 CCTT-TC
196 CCTTATC
*
8011143 ATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATTCATACAC
1 ATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATCCATACAC
* *
8011208 TTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAGATCCATACACTTAGTA
66 TTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACACTTAGTA
* * *
8011273 TGAATTCCTTATCATGTTAGCACATAAAGTGACCTATATGGAAATCCATACACTTAGTATGAATT
131 TGAATTCCTTATCATGCTAGCACACAAAGTGACCTATATAGAAATCCATACACTTAGTATGAATT
8011338 CCTTATC
196 CCTTATC
8011345 AT
1 AT
8011347 GTTAGCACAC
Statistics
Matches: 191, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
201 187 0.98
202 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (202 bp):
ATACAATTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTACATGGAAATCCATACAC
TTAGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACACTTAGTA
TGAATTCCTTATCATGCTAGCACACAAAGTGACCTATATAGAAATCCATACACTTAGTATGAATT
CCTTATC
Found at i:8011340 original size:260 final size:260
Alignment explanation
Indices: 8010879--8011405 Score: 871
Period size: 260 Copynumber: 2.0 Consensus size: 260
8010869 TCATATGGAA
* * * * *
8010879 TTTCATACACTTAGTATACATTTCTTATCATTTTAGCACACAAGGTGCCTAATATGGAAATTTAT
1 TTTCATACAATTAGTATACATTCCTTATCATGTTAGCACACAAGGTGCCTAACATGGAAATTCAT
8010944 ACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACACTT
66 ACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACACTT
* *
8011009 AGTATGAATTCCTTATCATGTTAGCACACGAAGCGCCCTATATGGAAATCCATACACTTAGTATG
131 AGTATGAATTCCTTATCATGTTAGCACACAAAGCGACCTATATGGAAATCCATACACTTAGTATG
**
8011074 AATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATTGATACACTTAGTATGAATTCC
196 AATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGTATGAATTCC
8011139 TTTCATACAATTAGTATGA-ATTCCTTATCATGTTAGCACACGAA-GTGCCCT-ACATGGAAATT
1 TTTCATACAATTAGTAT-ACATTCCTTATCATGTTAGCACAC-AAGGTG-CCTAACATGGAAATT
*
8011201 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAGATCCATACA
63 CATACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACA
* *
8011266 CTTAGTATGAATTCCTTATCATGTTAGCACATAAAGTGACCTATATGGAAATCCATACACTTAGT
128 CTTAGTATGAATTCCTTATCATGTTAGCACACAAAGCGACCTATATGGAAATCCATACACTTAGT
* *
8011331 ATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACACTTAGTATGAAT
193 ATGAATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGTATGAAT
8011396 TCC
258 TCC
8011399 TTATCAT
1 TT-TCAT
8011406 GTTAGCACAC
Statistics
Matches: 249, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
260 239 0.96
261 10 0.04
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (260 bp):
TTTCATACAATTAGTATACATTCCTTATCATGTTAGCACACAAGGTGCCTAACATGGAAATTCAT
ACACTTAGTATGAATTCCTTATCATGTTAGCACACGAAGTGCCCTATATGGAAATCCATACACTT
AGTATGAATTCCTTATCATGTTAGCACACAAAGCGACCTATATGGAAATCCATACACTTAGTATG
AATTCCTTATCATGCTAGCACACGAAGTGCCCTATATAGAAATCCATACACTTAGTATGAATTCC
Found at i:8015554 original size:13 final size:13
Alignment explanation
Indices: 8015522--8015547 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8015512 TGTGTAATCT
8015522 TGGTGCTTGGAAA
1 TGGTGCTTGGAAA
8015535 TGGTGCTTGGAAA
1 TGGTGCTTGGAAA
8015548 GCTTGCTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (13 bp):
TGGTGCTTGGAAA
Found at i:8020822 original size:7 final size:7
Alignment explanation
Indices: 8020810--8020837 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8020800 GATTAACAAC
8020810 GAAATGA
1 GAAATGA
8020817 GAAATGA
1 GAAATGA
8020824 GAAATGA
1 GAAATGA
8020831 GAAATGA
1 GAAATGA
8020838 AAGAAGATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14
Consensus pattern (7 bp):
GAAATGA
Found at i:8022719 original size:18 final size:18
Alignment explanation
Indices: 8022696--8022738 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
8022686 AGTTTTTTTA
* *
8022696 AAATAAAAGATAATATTT
1 AAATAAAAGAAAATAATT
8022714 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAATAATT
8022732 AAATAAA
1 AAATAAA
8022739 CAAAATAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
AAATAAAAGAAAATAATT
Found at i:8023408 original size:71 final size:74
Alignment explanation
Indices: 8023327--8023515 Score: 260
Period size: 76 Copynumber: 2.6 Consensus size: 74
8023317 TAAAACATCT
* * *
8023327 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT-AA-AAA-ATAATAT-TTAA
1 TAAATCCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAAACAAAGATAAAATATAAA
*
8023388 AATAATATTC
65 AATAATATCC
8023398 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAATCCTAATTAAAATACTAAAA-CTATTTAAACTAAAATACCT-AAACAAAGATAAAATATAA
8023463 AAATAATATCC
64 AAATAATATCC
* *
8023474 TAAAACTTAATTAAAATACTAAAACTTATTTAAACTAAAATA
1 TAAATCCTAATTAAAATACTAAAAC-TATTTAAACTAAAATA
8023516 AAAAAGATAA
Statistics
Matches: 105, Mismatches: 6, Indels: 9
0.88 0.05 0.08
Matches are distributed among these distances:
70 5 0.05
71 38 0.36
73 2 0.02
74 3 0.03
75 7 0.07
76 50 0.48
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.30
Consensus pattern (74 bp):
TAAATCCTAATTAAAATACTAAAACTATTTAAACTAAAATACCTAAACAAAGATAAAATATAAAA
ATAATATCC
Found at i:8023542 original size:76 final size:76
Alignment explanation
Indices: 8023371--8023553 Score: 217
Period size: 76 Copynumber: 2.4 Consensus size: 76
8023361 CTAAAATACC
* * *
8023371 TAAAAAATAATATTTAAAATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAA
1 TAAAATATAAT-TTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAA
*
8023436 AATACCTAAAACA
65 AATA-CAAAAACA
* * * * * *
8023449 -AAGATAAAATATAAAAATAATATCCTAAAACTTAATTAAAATACTAAAACTTATTTAAACTAAA
1 TAAAATATAATTTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAA
*
8023513 ATA-AAAAAGA
66 ATACAAAAACA
*
8023523 TAAAATATAATGTTTAAAATATTATCCTAAA
1 TAAAATATAAT-TTTAAAATAATATCCTAAA
8023554 CTTGAGTTTA
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
74 5 0.06
75 8 0.09
76 67 0.77
77 7 0.08
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (76 bp):
TAAAATATAATTTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAA
ATACAAAAACA
Found at i:8025452 original size:21 final size:21
Alignment explanation
Indices: 8025408--8025453 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8025398 AGTTTGCTAA
*
8025408 AAATAAAACAAAAATGAAATG
1 AAATAAAACAAAAATGAAACG
8025429 AAATAAAACAAAAAT-AGAACG
1 AAATAAAACAAAAATGA-AACG
8025450 AAAT
1 AAAT
8025454 GGGTTACCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.13
Consensus pattern (21 bp):
AAATAAAACAAAAATGAAACG
Found at i:8029561 original size:5 final size:5
Alignment explanation
Indices: 8029551--8029625 Score: 87
Period size: 5 Copynumber: 14.8 Consensus size: 5
8029541 CATATTGCTA
* *
8029551 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAACA AAAAT AAAAT GAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT
* * * *
8029602 GAAAT GAAAT GAAAT AAAAC AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAA
8029626 ATAGAACGAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
5 60 0.94
6 4 0.06
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8029596 original size:36 final size:36
Alignment explanation
Indices: 8029550--8029628 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
8029540 TCATATTGCT
8029550 AAAAATAAAATAAAATAAAATAAAATAAAATAAAAC
1 AAAAATAAAATAAAATAAAATAAAATAAAATAAAAC
* * * *
8029586 AAAAATAAAATGAAATGAAATGAAATGAAATAAAAC
1 AAAAATAAAATAAAATAAAATAAAATAAAATAAAAC
8029622 AAAAATA
1 AAAAATA
8029629 GAACGAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (36 bp):
AAAAATAAAATAAAATAAAATAAAATAAAATAAAAC
Found at i:8029637 original size:36 final size:36
Alignment explanation
Indices: 8029550--8029638 Score: 115
Period size: 36 Copynumber: 2.5 Consensus size: 36
8029540 TCATATTGCT
** *
8029550 AAAAATAAAATAAAATAAAATAAAATAAAATAAAAC
1 AAAAATAAAACGAAATGAAATAAAATAAAATAAAAC
* * *
8029586 AAAAATAAAATGAAATGAAATGAAATGAAATAAAAC
1 AAAAATAAAACGAAATGAAATAAAATAAAATAAAAC
*
8029622 AAAAATAGAACGAAATG
1 AAAAATAAAACGAAATG
8029639 GGTTGCCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (36 bp):
AAAAATAAAACGAAATGAAATAAAATAAAATAAAAC
Found at i:8032385 original size:24 final size:22
Alignment explanation
Indices: 8032358--8032425 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 22
8032348 AAATGTATAA
8032358 TAAAATAAATAATTATAAAAATAG
1 TAAAAT-AATAA-TATAAAAATAG
*
8032382 TAAAACTAATAAAATAATAAATAG
1 TAAAA-TAATAATATAA-AAATAG
*
8032406 TAATAGTAATAAATATAAAA
1 TAA-AATAAT-AATATAAAA
8032426 GGGGATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
23 4 0.11
24 25 0.68
25 8 0.22
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (22 bp):
TAAAATAATAATATAAAAATAG
Found at i:8032471 original size:18 final size:18
Alignment explanation
Indices: 8032450--8032492 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
8032440 GTTATTTTTA
*
8032450 AAATAAAAGATAATAATT
1 AAATAAAAGAAAATAATT
8032468 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAATAATT
8032486 AAATAAA
1 AAATAAA
8032493 TAATTAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAAAAGAAAATAATT
Found at i:8033049 original size:70 final size:73
Alignment explanation
Indices: 8032968--8033165 Score: 242
Period size: 76 Copynumber: 2.7 Consensus size: 73
8032958 AACAAGCTAA
* * * * *
8032968 AATATCTTAAATCCTAATTAAAACACTTTAAACTATTTAAA-TAAAATAC-CTA-AAAGATAATA
1 AATATCCTAAATCCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACAATACAAAGATAAAA
*
8033030 T-TTAAAAT
65 TATAAAAAT
*
8033038 AATATTCTAAATCCTAATTAAAATACTAAAATCTATTTAAACTAAAATATCTAATACAAAGATAA
1 AATATCCTAAATCCTAATTAAAATACTAAAA-CTATTTAAACTAAAATA-C-AATACAAAGATAA
8033103 AATATAAAAAT
63 AATATAAAAAT
* *
8033114 AATATCCTAAAACTTAATTAAAATACTAAAACTTATTTAAACTAAAATACAA
1 AATATCCTAAATCCTAATTAAAATACTAAAAC-TATTTAAACTAAAATACAA
8033166 AGATAAAATA
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
69 4 0.04
70 32 0.29
71 7 0.06
72 1 0.01
74 4 0.04
75 12 0.11
76 50 0.45
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.32
Consensus pattern (73 bp):
AATATCCTAAATCCTAATTAAAATACTAAAACTATTTAAACTAAAATACAATACAAAGATAAAAT
ATAAAAAT
Found at i:8033187 original size:76 final size:74
Alignment explanation
Indices: 8032968--8033199 Score: 235
Period size: 76 Copynumber: 3.1 Consensus size: 74
8032958 AACAAGCTAA
* * * * *
8032968 AATATCTTAAATCCTAATTAAAACACTTTAAA-CTATTTAAA-TAAAATA-C--CTAAAAGATAA
1 AATATCCTAAAACCTAATTAAAATAC-TAAAATCTATTTAAACTAAAATATCAAATAAAAGATAA
8033028 TATTTAAAAT
65 TATTTAAAAT
* * *
8033038 AATATTCTAAATCCTAATTAAAATACTAAAATCTATTTAAACTAAAATATCTAATACAAAGATAA
1 AATATCCTAAAACCTAATTAAAATACTAAAATCTATTTAAACTAAAATATCAAATA-AAAGATAA
* *
8033103 AATATAAAAAT
65 TAT-TTAAAAT
* *
8033114 AATATCCTAAAACTTAATTAAAATACTAAAA-CTTATTTAAACTAAAATA-CAAAGATAAAATAT
1 AATATCCTAAAACCTAATTAAAATACTAAAATC-TATTTAAACTAAAATATC-AA-ATAAAAGAT
*
8033177 AATGTTTAAAAT
63 AATATTTAAAAT
*
8033189 ATTATCCTAAA
1 AATATCCTAAA
8033200 CTTGAGTTTA
Statistics
Matches: 136, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
69 4 0.03
70 32 0.24
71 7 0.05
72 1 0.01
74 2 0.01
75 28 0.21
76 59 0.43
77 3 0.02
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.33
Consensus pattern (74 bp):
AATATCCTAAAACCTAATTAAAATACTAAAATCTATTTAAACTAAAATATCAAATAAAAGATAAT
ATTTAAAAT
Found at i:8033611 original size:18 final size:18
Alignment explanation
Indices: 8033588--8033623 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8033578 GGGGGTTTTG
*
8033588 GTAAAATGAGATTAAATA
1 GTAAAAAGAGATTAAATA
*
8033606 GTAAAAAGAGATTTAATA
1 GTAAAAAGAGATTAAATA
8033624 AAAGGTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.28
Consensus pattern (18 bp):
GTAAAAAGAGATTAAATA
Found at i:8036303 original size:16 final size:16
Alignment explanation
Indices: 8036282--8036324 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
8036272 TATTTAATAA
8036282 ATAAACAAACACGAAC
1 ATAAACAAACACGAAC
* *
8036298 ATAAACGAACACTAAC
1 ATAAACAAACACGAAC
8036314 ATAAACAAACA
1 ATAAACAAACA
8036325 TAAACGTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.63, C:0.23, G:0.05, T:0.09
Consensus pattern (16 bp):
ATAAACAAACACGAAC
Found at i:8037429 original size:10 final size:10
Alignment explanation
Indices: 8037414--8037488 Score: 51
Period size: 10 Copynumber: 6.7 Consensus size: 10
8037404 AACATAAATG
8037414 AACGAACATA
1 AACGAACATA
8037424 AACGAACATA
1 AACGAACATA
*
8037434 ACCGAACGAATGTA
1 AACGAAC--A--TA
8037448 AACGAACATA
1 AACGAACATA
*
8037458 ACCGAACGAATGTA
1 AACGAAC--A--TA
8037472 AACGAACATA
1 AACGAACATA
*
8037482 ACCGAAC
1 AACGAAC
8037489 GTTCACGAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
10 32 0.62
12 4 0.08
14 16 0.31
ACGTcount: A:0.52, C:0.23, G:0.15, T:0.11
Consensus pattern (10 bp):
AACGAACATA
Found at i:8037440 original size:24 final size:24
Alignment explanation
Indices: 8037404--8037489 Score: 136
Period size: 24 Copynumber: 3.6 Consensus size: 24
8037394 GATTGGGTTA
** **
8037404 AACATAAATGAACGAACATAAACG
1 AACATAACCGAACGAATGTAAACG
8037428 AACATAACCGAACGAATGTAAACG
1 AACATAACCGAACGAATGTAAACG
8037452 AACATAACCGAACGAATGTAAACG
1 AACATAACCGAACGAATGTAAACG
8037476 AACATAACCGAACG
1 AACATAACCGAACG
8037490 TTCACGAACG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.52, C:0.21, G:0.15, T:0.12
Consensus pattern (24 bp):
AACATAACCGAACGAATGTAAACG
Found at i:8041733 original size:2 final size:2
Alignment explanation
Indices: 8041726--8041761 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8041716 TGTTGAGATA
8041726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8041762 CGAGTATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8042682 original size:32 final size:34
Alignment explanation
Indices: 8042638--8042705 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 34
8042628 TAAATAAAAA
* *
8042638 AATTAAAAATATAATAAT-GAAAATAATTTTTTG
1 AATTAAAAATATAATAATAAAAAATAAGTTTTTG
8042671 AATT-AAAATATAATAATAAAAAATAAGTTTTTG
1 AATTAAAAATATAATAATAAAAAATAAGTTTTTG
8042704 AA
1 AA
8042706 AAAACAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (34 bp):
AATTAAAAATATAATAATAAAAAATAAGTTTTTG
Found at i:8042791 original size:32 final size:32
Alignment explanation
Indices: 8042750--8042813 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
8042740 CGTCGGTCTT
8042750 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
1 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
8042782 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
1 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
8042814 AATAATGACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (32 bp):
GTCTTGGGTAAACATCACTAGTTTATTGGTTA
Found at i:8047232 original size:22 final size:18
Alignment explanation
Indices: 8047206--8047250 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
8047196 TAAAAGTTTT
*
8047206 TTAAATAAAAGATAATAA
1 TTAAATAAAAGAAAATAA
8047224 TTAAATAAAAGAAAATAA
1 TTAAATAAAAGAAAATAA
8047242 TTAAATAAA
1 TTAAATAAA
8047251 CAAAATAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (18 bp):
TTAAATAAAAGAAAATAA
Found at i:8047921 original size:71 final size:74
Alignment explanation
Indices: 8047842--8048027 Score: 254
Period size: 76 Copynumber: 2.5 Consensus size: 74
8047832 TAAAACATCT
* * *
8047842 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT-AA-AAA-ATAATAT-TTAA
1 TAAATCCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAAACAAAGATAAAATATAAA
*
8047903 AATAATATTC
65 AATAATATCC
8047913 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAATCCTAATTAAAATACTAAAA-CTATTTAAACTAAAATACCT-AAACAAAGATAAAATATAA
8047978 AAATAATATCC
64 AAATAATATCC
* *
8047989 TAAAACTTAATTAAAATACTAAAACTTATTTAAACTAAA
1 TAAATCCTAATTAAAATACTAAAAC-TATTTAAACTAAA
8048028 TAAAAAAGAT
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
70 5 0.05
71 38 0.37
73 2 0.02
74 3 0.03
75 7 0.07
76 47 0.46
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.30
Consensus pattern (74 bp):
TAAATCCTAATTAAAATACTAAAACTATTTAAACTAAAATACCTAAACAAAGATAAAATATAAAA
ATAATATCC
Found at i:8048055 original size:76 final size:77
Alignment explanation
Indices: 8047886--8048067 Score: 219
Period size: 76 Copynumber: 2.4 Consensus size: 77
8047876 CTAAAATACC
* * *
8047886 TAAAAAATAATATTTAAAATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAA
1 TAAAATATAATATTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAA
*
8047951 AATACCTAAAACA
66 AATA-CAAAAACA
* * * * *
8047964 -AAGATAAAATA-TAAAAATAATATCCTAAAACTTAATTAAAATACTAAAACTTATTTAAACT-A
1 TAAAATATAATATTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAA
*
8048026 AATA-AAAAAGA
66 AATACAAAAACA
* *
8048037 TAAAATATAATGTTTAAAATATTATCCTAAA
1 TAAAATATAATATTTAAAATAATATCCTAAA
8048068 CTTGAGTTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
73 5 0.06
74 8 0.09
75 21 0.24
76 45 0.52
77 8 0.09
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (77 bp):
TAAAATATAATATTTAAAATAATATCCTAAAACCTAATTAAAATACTAAAACCTATTTAAACTAA
AATACAAAAACA
Found at i:8049913 original size:21 final size:21
Alignment explanation
Indices: 8049869--8049914 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8049859 AGTTTGCTAA
*
8049869 AAATAAAACAAAAATGAAATG
1 AAATAAAACAAAAATGAAACG
8049890 AAATAAAACAAAAAT-AGAACG
1 AAATAAAACAAAAATGA-AACG
8049911 AAAT
1 AAAT
8049915 GGGTTACCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.13
Consensus pattern (21 bp):
AAATAAAACAAAAATGAAACG
Found at i:8053628 original size:5 final size:5
Alignment explanation
Indices: 8053618--8053692 Score: 60
Period size: 5 Copynumber: 14.8 Consensus size: 5
8053608 CATATTCCTA
* * * * *
8053618 AAAAT AAAAT AAAAT AAAAT AAAACA AAAAT GAAAT GAAAT GAAAT GAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT
* * * *
8053669 GAAAT GAAAT GAAAT AAAAC AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAA
8053693 ATAGAACGAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
5 60 0.94
6 4 0.06
ACGTcount: A:0.72, C:0.03, G:0.09, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8053636 original size:15 final size:15
Alignment explanation
Indices: 8053619--8053692 Score: 76
Period size: 15 Copynumber: 4.9 Consensus size: 15
8053609 ATATTCCTAA
*
8053619 AAATAAAATAAAATA
1 AAATAAAATAAAATG
*
8053634 AAATAAAACAAAAATG
1 AAATAAAA-TAAAATG
* *
8053650 AAATGAAATGAAATG
1 AAATAAAATAAAATG
* *
8053665 AAATGAAATGAAATG
1 AAATAAAATAAAATG
*
8053680 AAATAAAACAAAA
1 AAATAAAATAAAA
8053693 ATAGAACGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
15 38 0.76
16 12 0.24
ACGTcount: A:0.72, C:0.03, G:0.09, T:0.16
Consensus pattern (15 bp):
AAATAAAATAAAATG
Found at i:8056607 original size:9 final size:9
Alignment explanation
Indices: 8056583--8056624 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8056573 GGTATAATAA
8056583 AATAAATAAT
1 AATAAA-AAT
*
8056593 TATAAAAAT
1 AATAAAAAT
*
8056602 AGTAAAAAT
1 AATAAAAAT
8056611 AAT-AAAAT
1 AATAAAAAT
8056619 AATAAA
1 AATAAA
8056625 TAGTAATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 8 0.30
9 14 0.52
10 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (9 bp):
AATAAAAAT
Found at i:8056702 original size:16 final size:17
Alignment explanation
Indices: 8056670--8056710 Score: 66
Period size: 16 Copynumber: 2.4 Consensus size: 17
8056660 AGTTATTTTA
8056670 AAATAAAAGATAATAATT
1 AAATAAAAGA-AATAATT
8056688 AAATAAAAG-AATAATT
1 AAATAAAAGAAATAATT
8056704 AAATAAA
1 AAATAAA
8056711 CAATTAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 14 0.61
18 9 0.39
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (17 bp):
AAATAAAAGAAATAATT
Found at i:8057272 original size:67 final size:69
Alignment explanation
Indices: 8057180--8057376 Score: 237
Period size: 67 Copynumber: 2.9 Consensus size: 69
8057170 CTAAATATCT
* * * *
8057180 TAAATCCTAATTAAAACACTTAAACTATTTAAATTAAATACC-TA-AAAGATAATAT-TAAAATA
1 TAAAT-CTAATTAAAATACTAAAACTATTTAAACTAAATACCATACAAAGATAAAATATAAAATA
*
8057242 ATATTC
65 A-ATCC
8057248 TAAATCTAATTAAAATACTAAAACTATTTAAACTAAATACCTAATACAAAGATAAAATATAAAAT
1 TAAATCTAATTAAAATACTAAAACTATTTAAACTAAATACC--ATACAAAGATAAAATATAAAAT
8057313 AAATCC
64 AAATCC
*
8057319 TAAAACTTAATTAAAATACTAAAACTTATTTAAACT-AA-A--ATACAAAGATAAAATATAA
1 TAAATC-TAATTAAAATACTAAAAC-TATTTAAACTAAATACCATACAAAGATAAAATATAA
8057377 TATTTAAAAT
Statistics
Matches: 116, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
67 52 0.45
68 5 0.04
70 2 0.02
71 19 0.16
72 28 0.24
73 10 0.09
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (69 bp):
TAAATCTAATTAAAATACTAAAACTATTTAAACTAAATACCATACAAAGATAAAATATAAAATAA
ATCC
Found at i:8057335 original size:19 final size:19
Alignment explanation
Indices: 8057313--8057352 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8057303 AATATAAAAT
*
8057313 AAATCCTAAAACTTAATTA
1 AAATACTAAAACTTAATTA
*
8057332 AAATACTAAAACTTATTTA
1 AAATACTAAAACTTAATTA
8057351 AA
1 AA
8057353 CTAAAATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATACTAAAACTTAATTA
Found at i:8057379 original size:72 final size:71
Alignment explanation
Indices: 8057186--8057397 Score: 213
Period size: 72 Copynumber: 3.0 Consensus size: 71
8057176 ATCTTAAATC
* * * *
8057186 CTAATTAAAACACTTAAACTATTTAAATTAAATACC-----TAAAAGATAATATTAAAATAATAT
1 CTAATTAAAATACTAAAACTATTTAAACTAAATACCAAAGATAAAATATAATATTAAAATAA-AT
* *
8057246 TCTAAAT
65 CCTAAAA
* * * *
8057253 CTAATTAAAATACTAAAACTATTTAAACTAAATACCTAATACAAAGATAAAATA-TAAAATAAAT
1 CTAATTAAAATACTAAAACTATTTAAACTAAATACCAAAGATAAA-ATATAATATTAAAATAAAT
8057317 CCTAAAA
65 CCTAAAA
8057324 CTTAATTAAAATACTAAAACTTATTTAAACTAAAATA-CAAAGATAAAATATAATATTTAAAATA
1 C-TAATTAAAATACTAAAAC-TATTTAAACT-AAATACCAAAGATAAAATATAATA-TTAAAATA
*
8057388 TTATCCTAAA
62 -AATCCTAAA
8057398 CTTGAGTTTA
Statistics
Matches: 120, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
67 33 0.28
71 8 0.07
72 36 0.30
73 23 0.19
74 12 0.10
75 8 0.07
ACGTcount: A:0.56, C:0.11, G:0.01, T:0.32
Consensus pattern (71 bp):
CTAATTAAAATACTAAAACTATTTAAACTAAATACCAAAGATAAAATATAATATTAAAATAAATC
CTAAAA
Found at i:8057979 original size:52 final size:51
Alignment explanation
Indices: 8057880--8057985 Score: 203
Period size: 52 Copynumber: 2.1 Consensus size: 51
8057870 AAAAACTTAG
8057880 CCTCAAGCCTCGCTTTGACTCAATTCCTTTAGATCATCGAATTAGATTTTC
1 CCTCAAGCCTCGCTTTGACTCAATTCCTTTAGATCATCGAATTAGATTTTC
8057931 CCTCAAGCCTCGCTTTGACTCAATTTCCTTTAGATCATCGAATTAGATTTTC
1 CCTCAAGCCTCGCTTTGACTCAA-TTCCTTTAGATCATCGAATTAGATTTTC
8057983 CCT
1 CCT
8057986 TCGGGATTCA
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 23 0.43
52 31 0.57
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (51 bp):
CCTCAAGCCTCGCTTTGACTCAATTCCTTTAGATCATCGAATTAGATTTTC
Found at i:8060539 original size:16 final size:16
Alignment explanation
Indices: 8060518--8060560 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
8060508 TATTTAATAA
8060518 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
*
8060534 ATAAACGAACACTAAC
1 ATAAACGAACACGAAC
*
8060550 ATAAACAAACA
1 ATAAACGAACA
8060561 TAAACGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.60, C:0.23, G:0.07, T:0.09
Consensus pattern (16 bp):
ATAAACGAACACGAAC
Found at i:8061670 original size:24 final size:24
Alignment explanation
Indices: 8061634--8061695 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
8061624 GATTGGGTTA
*
8061634 AACATAAATGAACGAACATAAACG
1 AACATAACTGAACGAACATAAACG
* *
8061658 AACATAACCGAACGAACGTAAACG
1 AACATAACTGAACGAACATAAACG
8061682 AACATAACTGAACG
1 AACATAACTGAACG
8061696 TTCACGAACG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.53, C:0.21, G:0.15, T:0.11
Consensus pattern (24 bp):
AACATAACTGAACGAACATAAACG
Found at i:8061696 original size:20 final size:20
Alignment explanation
Indices: 8061671--8061715 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8061661 ATAACCGAAC
*
8061671 GAACGTAAACGAACATAACT
1 GAACGTAAACGAACATAAAT
** *
8061691 GAACGTTCACGAACGTAAAT
1 GAACGTAAACGAACATAAAT
8061711 GAACG
1 GAACG
8061716 AACGAGACCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.20, T:0.16
Consensus pattern (20 bp):
GAACGTAAACGAACATAAAT
Found at i:8066210 original size:32 final size:32
Alignment explanation
Indices: 8066169--8066232 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
8066159 CGTCGGTCTT
8066169 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
1 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
8066201 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
1 GTCTTGGGTAAACATCACTAGTTTATTGGTTA
8066233 AATAATGACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (32 bp):
GTCTTGGGTAAACATCACTAGTTTATTGGTTA
Found at i:8072450 original size:20 final size:20
Alignment explanation
Indices: 8072425--8072467 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8072415 TCTAAAGGTT
*
8072425 CATTTAGGAGCATATAGATG
1 CATTTAGAAGCATATAGATG
* *
8072445 CATTTAGAAGCATTTAGTTG
1 CATTTAGAAGCATATAGATG
8072465 CAT
1 CAT
8072468 GTGGTGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGAAGCATATAGATG
Found at i:8072652 original size:210 final size:211
Alignment explanation
Indices: 8072290--8072711 Score: 837
Period size: 210 Copynumber: 2.0 Consensus size: 211
8072280 ATCTGTCCAA
8072290 TCAGACTATCATTACTTAGGAGCAGCCATCGTAAGTTTCTTAAACTTCCAATTGTAATTGGAATG
1 TCAGACTATCATTACTTAGGAGCAGCCATCGTAAGTTTCTTAAACTTCCAATTGTAATTGGAATG
8072355 TCTTGTGATAACTCCGTAAAAGGTCACATTTTGGGACCTTTTAACTTAAGTTATTGAATATCTAA
66 TCTTGTGATAACTCCGTAAAAGGTCACATTTTGGGACCTTTTAACTTAAGTTATTGAATATCTAA
8072420 AGGTTCATTTAGGAGCATATAGATGCATTTAGAAGCATTTAGTTGCATGTGGTGAA-TTTCGGTT
131 AGGTTCATTTAGGAGCATATAGATGCATTTAGAAGCATTTAGTTGCATGTGGTGAATTTTCGGTT
8072484 TGCCGTGGCATTTTAT
196 TGCCGTGGCATTTTAT
8072500 TCAGACTATCATTACTTAGGAGCAGCCATCGTAAGTTTCTTAAACTTCCAATTGTAATTGGAATG
1 TCAGACTATCATTACTTAGGAGCAGCCATCGTAAGTTTCTTAAACTTCCAATTGTAATTGGAATG
8072565 TCTTGTGATAACTCCGTAAAAGGTCACATTTTGGGACCTTTTAACTTAAGTTATTGAATATCTAA
66 TCTTGTGATAACTCCGTAAAAGGTCACATTTTGGGACCTTTTAACTTAAGTTATTGAATATCTAA
8072630 AGGTTCATTTAGGAGCATATAGATGCATTTAGAAGCATTTAGTTGCATGTGGTGAATTTTCGGTT
131 AGGTTCATTTAGGAGCATATAGATGCATTTAGAAGCATTTAGTTGCATGTGGTGAATTTTCGGTT
8072695 TGCCGTGGCATTTTAT
196 TGCCGTGGCATTTTAT
8072711 T
1 T
8072712 TTTACTGCGG
Statistics
Matches: 211, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
210 186 0.88
211 25 0.12
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (211 bp):
TCAGACTATCATTACTTAGGAGCAGCCATCGTAAGTTTCTTAAACTTCCAATTGTAATTGGAATG
TCTTGTGATAACTCCGTAAAAGGTCACATTTTGGGACCTTTTAACTTAAGTTATTGAATATCTAA
AGGTTCATTTAGGAGCATATAGATGCATTTAGAAGCATTTAGTTGCATGTGGTGAATTTTCGGTT
TGCCGTGGCATTTTAT
Found at i:8072660 original size:20 final size:20
Alignment explanation
Indices: 8072635--8072677 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8072625 TCTAAAGGTT
*
8072635 CATTTAGGAGCATATAGATG
1 CATTTAGAAGCATATAGATG
* *
8072655 CATTTAGAAGCATTTAGTTG
1 CATTTAGAAGCATATAGATG
8072675 CAT
1 CAT
8072678 GTGGTGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGAAGCATATAGATG
Found at i:8084531 original size:19 final size:19
Alignment explanation
Indices: 8084507--8084554 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
8084497 AACTTATCAC
8084507 TGTATTACTTGTTCGATTG
1 TGTATTACTTGTTCGATTG
8084526 TGTATTACTTGTTCGATTG
1 TGTATTACTTGTTCGATTG
*
8084545 TATA-TACTTG
1 TGTATTACTTG
8084555 CACATATATC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (19 bp):
TGTATTACTTGTTCGATTG
Found at i:8085402 original size:17 final size:18
Alignment explanation
Indices: 8085380--8085413 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8085370 TTAATAAAAG
8085380 TTTTCTTTTTTT-TTTTA
1 TTTTCTTTTTTTGTTTTA
8085397 TTTTCTTTTTTTGTTTT
1 TTTTCTTTTTTTGTTTT
8085414 TACTTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.88
Consensus pattern (18 bp):
TTTTCTTTTTTTGTTTTA
Found at i:8085426 original size:20 final size:18
Alignment explanation
Indices: 8085385--8085429 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8085375 AAAAGTTTTC
* *
8085385 TTTTTTTTTTTATTTTCT
1 TTTTTTTTTTTACTTTAT
8085403 TTTTTTGTTTTTACTTTAT
1 TTTTTT-TTTTTACTTTAT
8085422 ATTTTTTT
1 -TTTTTTT
8085430 CTTTCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.09, C:0.04, G:0.02, T:0.84
Consensus pattern (18 bp):
TTTTTTTTTTTACTTTAT
Found at i:8091248 original size:19 final size:20
Alignment explanation
Indices: 8091202--8091250 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
8091192 TGAAAAGATT
*
8091202 TAATAAAATAAAATAGATAA
1 TAATAAAATAAAAGAGATAA
*
8091222 TAAT-AAATAAAAGGGA-AA
1 TAATAAAATAAAAGAGATAA
8091240 TAATAAAATAA
1 TAATAAAATAA
8091251 TAAATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 16 0.62
20 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (20 bp):
TAATAAAATAAAAGAGATAA
Found at i:8092099 original size:85 final size:82
Alignment explanation
Indices: 8092007--8092200 Score: 231
Period size: 75 Copynumber: 2.4 Consensus size: 82
8091997 CTCTTAAAAT
* * *
8092007 TATTTAAACTAAAATACCTAAAACAAATATAAAATAAAATACTCTTTAAATTAATATCCTAAATC
1 TATTTAAACTAAAATACCTAAAACAAACATAAAATAAAATA---TTTAAAATAATATCCTAAAAC
* *
8092072 CTAATTAAAATACTAAAACA
63 ATAATGAAAATACTAAAACA
* * *
8092092 TATTTAAACT-AAA-A--T---ACAAAGATAAAATATAATATTTAAAATATTATCCTAAAACATA
1 TATTTAAACTAAAATACCTAAAACAAACATAAAATAAAATATTTAAAATAATATCCTAAAACATA
*
8092150 ATGAAAATACTAAAACC
66 ATGAAAATACTAAAACA
8092167 TATTTAAACTAAAATACCTAAAACAAACATAAAA
1 TATTTAAACTAAAATACCTAAAACAAACATAAAA
8092201 AATATTATCC
Statistics
Matches: 93, Mismatches: 9, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
75 45 0.48
76 3 0.03
77 1 0.01
78 17 0.18
79 1 0.01
81 1 0.01
82 11 0.12
83 1 0.01
84 3 0.03
85 10 0.11
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.29
Consensus pattern (82 bp):
TATTTAAACTAAAATACCTAAAACAAACATAAAATAAAATATTTAAAATAATATCCTAAAACATA
ATGAAAATACTAAAACA
Found at i:8092999 original size:23 final size:23
Alignment explanation
Indices: 8092973--8093018 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8092963 AATAACGAAT
*
8092973 AAAAACATGATAAAATGAAAAAA
1 AAAAAAATGATAAAATGAAAAAA
*
8092996 AAAAAAATGATTAAATGAAAAAA
1 AAAAAAATGATAAAATGAAAAAA
8093019 CAATCTTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (23 bp):
AAAAAAATGATAAAATGAAAAAA
Found at i:8094126 original size:15 final size:15
Alignment explanation
Indices: 8094106--8094135 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8094096 AAGTTTGCTA
8094106 AAAATAAAACGAAAT
1 AAAATAAAACGAAAT
8094121 AAAATAAAACGAAAT
1 AAAATAAAACGAAAT
8094136 GGGTTACCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.13
Consensus pattern (15 bp):
AAAATAAAACGAAAT
Done.