Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 49
Found at i:8100870 original size:21 final size:21
Alignment explanation
Indices: 8100832--8100881 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
8100822 TAGGGGAAAT
* *
8100832 GATCGATTCCTTTCCAAAATG
1 GATCGATCCCTTTCCAAAAGG
* *
8100853 GATTGATCCCTTTTCAAAAGG
1 GATCGATCCCTTTCCAAAAGG
8100874 GATCGATC
1 GATCGATC
8100882 TCTTGTGTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (21 bp):
GATCGATCCCTTTCCAAAAGG
Found at i:8102893 original size:11 final size:9
Alignment explanation
Indices: 8102823--8102901 Score: 50
Period size: 10 Copynumber: 8.1 Consensus size: 9
8102813 ATCAAATATA
*
8102823 TATATATAT
1 TATATACAT
*
8102832 TATATATAT
1 TATATACAT
*
8102841 ATATATATAT
1 -TATATACAT
*
8102851 ATATATATAT
1 -TATATACAT
*
8102861 ATATATATAT
1 -TATATACAT
*
8102871 ATATATATAT
1 -TATATACAT
8102881 TAATTATACAT
1 T-A-TATACAT
8102892 TATATACAT
1 TATATACAT
8102901 T
1 T
8102902 TTATCATCCA
Statistics
Matches: 66, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
9 18 0.27
10 41 0.62
11 7 0.11
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (9 bp):
TATATACAT
Found at i:8102897 original size:2 final size:2
Alignment explanation
Indices: 8102807--8102880 Score: 123
Period size: 2 Copynumber: 37.0 Consensus size: 2
8102797 TTACAACCGA
*
8102807 AT AT AT AT CAA AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8102849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8102881 TAATTATACA
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
1 1 0.01
2 66 0.97
3 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8109209 original size:15 final size:15
Alignment explanation
Indices: 8109185--8109286 Score: 111
Period size: 15 Copynumber: 6.9 Consensus size: 15
8109175 TGGTTTTCCG
8109185 GAAA-ATGAATTACT
1 GAAATATGAATTACT
8109199 GAAATATGAATTACT
1 GAAATATGAATTACT
*
8109214 GAAATTTGAATTACT
1 GAAATATGAATTACT
* * *
8109229 GGAATTTAAATTACT
1 GAAATATGAATTACT
8109244 AGAAA-ATGAATTACT
1 -GAAATATGAATTACT
* *
8109259 GGAATTTGAATT-CT
1 GAAATATGAATTACT
*
8109273 GAAAAATGAATTAC
1 GAAATATGAATTAC
8109287 ATTTCTGGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
14 18 0.25
15 52 0.71
16 3 0.04
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (15 bp):
GAAATATGAATTACT
Found at i:8109224 original size:30 final size:29
Alignment explanation
Indices: 8109185--8109286 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 29
8109175 TGGTTTTCCG
* *
8109185 GAAAATGAATTACTGAAATATGAATTACT
1 GAAAATGAATTACTGGAATTTGAATTACT
* *
8109214 GAAATTTGAATTACTGGAATTTAAATTACT
1 GAAA-ATGAATTACTGGAATTTGAATTACT
8109244 AGAAAATGAATTACTGGAATTTGAATT-CT
1 -GAAAATGAATTACTGGAATTTGAATTACT
8109273 GAAAAATGAATTAC
1 G-AAAATGAATTAC
8109287 ATTTCTGGAA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 1 0.02
29 18 0.28
30 41 0.64
31 4 0.06
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (29 bp):
GAAAATGAATTACTGGAATTTGAATTACT
Found at i:8109292 original size:20 final size:20
Alignment explanation
Indices: 8109269--8109318 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
8109259 GGAATTTGAA
8109269 TTCTGAAAAATGAATTACAT
1 TTCTGAAAAATGAATTACAT
*
8109289 TTCTGGAAAATGAATTACAT
1 TTCTGAAAAATGAATTACAT
8109309 TTCTGGAAAA
1 TTCT-GAAAA
8109319 CGTTTTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (20 bp):
TTCTGAAAAATGAATTACAT
Found at i:8109638 original size:23 final size:23
Alignment explanation
Indices: 8109589--8109651 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
8109579 GTGTTATATT
* * *
8109589 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAATATATTAACTAGG
* *
8109612 ATATTTTAAATATCTTTACTAGG
1 ATATTTTAAATATATTAACTAGG
8109635 ATATGTTTTAAATATAT
1 ATA--TTTTAAATATAT
8109652 AAATAATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 21 0.66
25 11 0.34
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.49
Consensus pattern (23 bp):
ATATTTTAAATATATTAACTAGG
Found at i:8109691 original size:28 final size:28
Alignment explanation
Indices: 8109636--8109716 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
8109626 TTTACTAGGA
* *
8109636 TATGTTTTAAATATATAAATAATATTAT
1 TATGTATTAAATATATAAAAAATATTAT
8109664 TCAT-TATTAAATATATAAAAAA-ATTTAT
1 T-ATGTATTAAATATATAAAAAATA-TTAT
8109692 TATGTATTATTAA-A-ATAAAAAATAT
1 TATGTATTA--AATATATAAAAAATAT
8109717 AATATCTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
27 3 0.07
28 36 0.80
29 4 0.09
30 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (28 bp):
TATGTATTAAATATATAAAAAATATTAT
Found at i:8109701 original size:31 final size:29
Alignment explanation
Indices: 8109642--8109713 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 29
8109632 AGGATATGTT
*
8109642 TTAAATATAT-AAATAATATTATTCATTA
1 TTAAATATATAAAAAAATATTATTCATTA
8109670 TTAAATATATAAAAAAATTTATTATGT-ATTA
1 TTAAATATATAAAAAAA--TATTAT-TCATTA
8109701 TTAAA-ATA-AAAAA
1 TTAAATATATAAAAA
8109714 TATAATATCT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 10 0.26
29 10 0.26
30 3 0.08
31 15 0.38
32 1 0.03
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (29 bp):
TTAAATATATAAAAAAATATTATTCATTA
Found at i:8109738 original size:23 final size:23
Alignment explanation
Indices: 8109711--8109796 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 23
8109701 TTAAAATAAA
8109711 AAATATAATATCTTATATTATTAT
1 AAATATAATAT-TTATATTATTAT
8109735 -AATATAAT-TGATTATATTATTAAACT
1 AAATATAATAT--TTATATTATT--A-T
8109761 AAAAATATAATATTTATATTATTAT
1 --AAATATAATATTTATATTATTAT
8109786 AAATATTAATA
1 AAATA-TAATA
8109797 AATATATTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 18
0.73 0.01 0.25
Matches are distributed among these distances:
22 1 0.02
23 23 0.44
24 5 0.10
25 2 0.04
26 2 0.04
28 10 0.19
29 8 0.15
30 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (23 bp):
AAATATAATATTTATATTATTAT
Found at i:8109801 original size:28 final size:28
Alignment explanation
Indices: 8109696--8109790 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
8109686 ATTTATTATG
8109696 TATTATTAAAATAAAAAATATAATATCTTA
1 TATTATTAAAAT-AAAAATATAATAT-TTA
* * *
8109726 TATTATTATAAT-ATAAT-T--GA-TTA
1 TATTATTAAAATAAAAATATAATATTTA
*
8109749 TATTATTAAACTAAAAATATAATATTTA
1 TATTATTAAAATAAAAATATAATATTTA
8109777 TATTATTATAAATA
1 TATTATTA-AAATA
8109791 TTAATAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
23 13 0.25
24 4 0.08
25 2 0.04
27 2 0.04
28 15 0.29
29 4 0.08
30 11 0.22
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (28 bp):
TATTATTAAAATAAAAATATAATATTTA
Found at i:8109803 original size:52 final size:53
Alignment explanation
Indices: 8109696--8109809 Score: 155
Period size: 52 Copynumber: 2.2 Consensus size: 53
8109686 ATTTATTATG
* *
8109696 TATTATTAAAATAAAAAATATAATATCTTATATTATTATAATATAATTGATTA
1 TATTATTAAAATAAAAAATATAATATCTTATATTATTATAATATAATTAAATA
*
8109749 TATTATTAAACT-AAAAATATAATAT-TTATATTATTATAAATATTAA-TAAATA
1 TATTATTAAAATAAAAAATATAATATCTTATATTATTAT-AATA-TAATTAAATA
8109801 TATT-TTAAA
1 TATTATTAAA
8109810 TATTTTATTA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
51 17 0.30
52 25 0.45
53 14 0.25
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (53 bp):
TATTATTAAAATAAAAAATATAATATCTTATATTATTATAATATAATTAAATA
Found at i:8110061 original size:42 final size:42
Alignment explanation
Indices: 8110002--8110113 Score: 179
Period size: 42 Copynumber: 2.7 Consensus size: 42
8109992 ATGAATTACG
8110002 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
* *
8110044 TTCCGGAAAATGAATTACGTGAAACAAAGACGGGAAAACATT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
** *
8110086 TTCCAAAAAACGAATTACATGAAACAAA
1 TTCCGGAAAACGAATTACGTGAAACAAA
8110114 TACGAAATTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (42 bp):
TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
Found at i:8111972 original size:32 final size:33
Alignment explanation
Indices: 8111936--8112002 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
8111926 AAATTCTGGT
* *
8111936 TCGGGTTGGA-TTTTTTAAGTTTGATATTCGGG
1 TCGGGTTAGATTTTTTTAAGTGTGATATTCGGG
8111968 TCGGGTTAGATTTTTTTAAGTGTGATATTCGGG
1 TCGGGTTAGATTTTTTTAAGTGTGATATTCGGG
8112001 TC
1 TC
8112003 AGATTTAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 9 0.28
33 23 0.72
ACGTcount: A:0.16, C:0.07, G:0.30, T:0.46
Consensus pattern (33 bp):
TCGGGTTAGATTTTTTTAAGTGTGATATTCGGG
Found at i:8112008 original size:93 final size:93
Alignment explanation
Indices: 8111807--8111982 Score: 230
Period size: 92 Copynumber: 1.9 Consensus size: 93
8111797 CAATCTTTTG
* *
8111807 GTATTCGGTTCAGATTTTTTTTAAAAAAAATCGAGGTCGTGTCGGATTTTTTAAGTTGATATTCG
1 GTATTCGGGTCAGATTTTTTTTAAAAAAAATCGAGGTCGGGTCGGATTTTTTAAGTTGATATTCG
* * *
8111872 GGTCGGGTCGGGTTTTTAAAAAAAATTA
66 GGTCGGGTCAGATTTTTAAAAAAAATGA
* * *
8111900 GGA-TCGGGTCAGATTTTTTTTAAAAAAAATTCTG-GTTCGGGTTGGATTTTTTAAGTTTGATAT
1 GTATTCGGGTCAGATTTTTTTTAAAAAAAA-TC-GAGGTCGGGTCGGATTTTTTAAG-TTGATAT
*
8111963 TCGGGTCGGGTTAGATTTTT
63 TCGGGTCGGGTCAGATTTTT
8111983 TTAAGTGTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
92 25 0.35
93 22 0.31
94 25 0.35
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (93 bp):
GTATTCGGGTCAGATTTTTTTTAAAAAAAATCGAGGTCGGGTCGGATTTTTTAAGTTGATATTCG
GGTCGGGTCAGATTTTTAAAAAAAATGA
Found at i:8112337 original size:16 final size:16
Alignment explanation
Indices: 8112311--8112348 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
8112301 GACCATCCCT
*
8112311 AATTGTGATGATTTTA
1 AATTATGATGATTTTA
*
8112327 ACTTATGATGATTTTA
1 AATTATGATGATTTTA
8112343 AATTAT
1 AATTAT
8112349 AATGTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.50
Consensus pattern (16 bp):
AATTATGATGATTTTA
Found at i:8113695 original size:67 final size:65
Alignment explanation
Indices: 8113504--8113721 Score: 176
Period size: 67 Copynumber: 3.3 Consensus size: 65
8113494 TAAGAGAAGT
* * * * * * *
8113504 TATCTCAAGTGAGATAAAATTATTATTCTAAATGAAACAATCTCGATTTTTTTGTGTTTCAAGAA
1 TATCTCAAGTGAGAT-AAATTTTTGTTTTGAGTGAAACAATCTC-AATATTTT-T-TTTCAAGAA
8113569 AAA-
62 AAAC
* * *
8113572 T-TCCTCAAG-GAGATGAAA-TTTTGTTTCGAGGGAAATAATCTCAA-AGTTTGTTTTTCAAGAA
1 TAT-CTCAAGTGAGAT-AAATTTTTGTTTTGAGTGAAACAATCTCAATA-TTT-TTTTTCAAGAA
8113633 AAAC
62 AAAC
* * *
8113637 TATATCAAGTGAGATAAACTTTTTGTTTTGAGTGAAACAATCTCAATATTTTTATTTCAAGAGAG
1 TATCTCAAGTGAGATAAA-TTTTTGTTTTGAGTGAAACAATCTCAATATTTTT-TTTCAAGAAAA
8113702 AC
64 AC
* *
8113704 TATCTCAAATGAAATAAA
1 TATCTCAAGTGAGATAAA
8113722 ACTTATTTCA
Statistics
Matches: 120, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
64 12 0.10
65 14 0.12
66 25 0.21
67 61 0.51
68 8 0.07
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (65 bp):
TATCTCAAGTGAGATAAATTTTTGTTTTGAGTGAAACAATCTCAATATTTTTTTTCAAGAAAAAC
Found at i:8113758 original size:65 final size:65
Alignment explanation
Indices: 8113667--8113790 Score: 158
Period size: 65 Copynumber: 1.9 Consensus size: 65
8113657 TTTTGTTTTG
*
8113667 AGTGAAACAATCTCAATATTTTTATTTCAAGAGAGACTATCTCAAATGAAATAAAACTTATTTCA
1 AGTGAAACAATCTCAATATTTGTATTTCAAGAGAGACTATCTCAAATGAAATAAAACTTATTTCA
* * * * * * * * *
8113732 AGTGAAATAATTTCAATATTTGTATTTTAGGGGATATTATCTCAAGTGAGATAAAACTT
1 AGTGAAACAATCTCAATATTTGTATTTCAAGAGAGACTATCTCAAATGAAATAAAACTT
8113791 GTTTTAAGAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (65 bp):
AGTGAAACAATCTCAATATTTGTATTTCAAGAGAGACTATCTCAAATGAAATAAAACTTATTTCA
Found at i:8113810 original size:36 final size:36
Alignment explanation
Indices: 8113770--8113857 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 36
8113760 AGGGGATATT
* *
8113770 ATCTCAAGTGAGATAAAACTTGTTTTAAGAAAAATA
1 ATCTCAAGTGAGATAAAACTTGTGTTAAGAAAAACA
*
8113806 ATCTCAAGTGAGATAAAATTTGTGTTAAGAAAAACA
1 ATCTCAAGTGAGATAAAACTTGTGTTAAGAAAAACA
*
8113842 ATCTCAAGTAAGATAA
1 ATCTCAAGTGAGATAA
8113858 CATCTTTAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (36 bp):
ATCTCAAGTGAGATAAAACTTGTGTTAAGAAAAACA
Found at i:8114194 original size:43 final size:42
Alignment explanation
Indices: 8114107--8114255 Score: 142
Period size: 43 Copynumber: 3.4 Consensus size: 42
8114097 TCTCCTTCTA
** * *
8114107 TGATGGAATCGTATAAAAAGAGTAATGTTG-GCTCAACTCATTATG
1 TGATGGAATCG-AGCAAAAGAG-AATGTTGATC-CAATTC-TTATG
*
8114152 TGATGGAACCGAGCGAAAAGA-AATGTTGATCC-ATCTCTTTATG
1 TGATGGAATCGAGC-AAAAGAGAATGTTGATCCAAT-TC-TTATG
*
8114195 TGATGGAATCGAACAAAAGAGTAATGTTGATCCAATTCTTATG
1 TGATGGAATCGAGCAAAAGAG-AATGTTGATCCAATTCTTATG
*
8114238 TGATGTAATCGAGCAAAA
1 TGATGGAATCGAGCAAAA
8114256 ATATGATAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 7 0.08
43 48 0.55
44 15 0.17
45 18 0.20
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (42 bp):
TGATGGAATCGAGCAAAAGAGAATGTTGATCCAATTCTTATG
Found at i:8114415 original size:116 final size:116
Alignment explanation
Indices: 8114268--8114501 Score: 274
Period size: 116 Copynumber: 2.0 Consensus size: 116
8114258 ATGATAATGG
* * *
8114268 TCCAACTTCTTATGTGATGGACGAGCCAAGGTTGAATAAGCTCTTCTCATTATGA-ATTTATTAT
1 TCCAACTTCTTATGTGATGGACGAACCAAGGTTGAACAAGCTCTTCTCATTATGACATCT-TTAT
* *
8114332 CCCTCGTCAGA-TGAGTTCTTCTCATTATGAACCCTTCTATTAGAAATGTTGA
65 CCCTCGTCAGACT-AGTTCTTCTCATTATGAACCCTTCCATTAGAAAGGTTGA
* * * * * ** * *
8114384 TCCACCTTCTTCTGTGATTGATGAACTAAGGTTGAACAATTTCTTCTCATTATGACCTCTTTCTC
1 TCCAACTTCTTATGTGATGGACGAACCAAGGTTGAACAAGCTCTTCTCATTATGACATCTTTATC
* * * *
8114449 TCTCGTCGGACTAGTTCTTCTCATTATGAACTCTTCCATTTGAAAGGTTGA
66 CCTCGTCAGACTAGTTCTTCTCATTATGAACCCTTCCATTAGAAAGGTTGA
8114500 TC
1 TC
8114502 TATCTTCTCT
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
116 95 0.97
117 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (116 bp):
TCCAACTTCTTATGTGATGGACGAACCAAGGTTGAACAAGCTCTTCTCATTATGACATCTTTATC
CCTCGTCAGACTAGTTCTTCTCATTATGAACCCTTCCATTAGAAAGGTTGA
Found at i:8118866 original size:25 final size:25
Alignment explanation
Indices: 8118837--8118884 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8118827 TGAGAGTCAA
8118837 CACTAATCTGTTTAAGGTGAGATAC
1 CACTAATCTGTTTAAGGTGAGATAC
8118862 CACTAATCTGTTTAAGGTGAGAT
1 CACTAATCTGTTTAAGGTGAGAT
8118885 TAAAGCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (25 bp):
CACTAATCTGTTTAAGGTGAGATAC
Found at i:8120179 original size:22 final size:22
Alignment explanation
Indices: 8120154--8120254 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
8120144 TTAAAATAAA
*
8120154 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
** * *
8120176 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGGA-TTGAT
* * * *
8120200 ATAATTTATTAGTATGGATTGAT
1 TTATTTTA-AAATATGGATTGAT
8120223 TTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
8120245 TTATTTTAAA
1 TTATTTTAAA
8120255 TAATTTATTA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (22 bp):
TTATTTTAAAATATGGATTGAT
Found at i:8120203 original size:14 final size:15
Alignment explanation
Indices: 8120062--8120209 Score: 190
Period size: 15 Copynumber: 9.5 Consensus size: 15
8120052 TAATAAGGTT
8120062 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
8120077 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
8120092 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
8120107 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
8120122 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
8120137 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
8120152 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
8120171 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
8120189 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
8120203 ATTTATT
1 ATTTATT
8120210 AGTATGGATT
Statistics
Matches: 118, Mismatches: 8, Indels: 15
0.84 0.06 0.11
Matches are distributed among these distances:
14 12 0.10
15 86 0.73
16 4 0.03
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.03
22 6 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:8120227 original size:32 final size:32
Alignment explanation
Indices: 8120189--8120764 Score: 459
Period size: 32 Copynumber: 18.4 Consensus size: 32
8120179 TTTTAAAATA
8120189 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120221 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120243 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120275 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120307 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* * *
8120339 ATTTATTTTAAATATGAATTGATTTATTAATGTAGTTG
1 ATTTATTTT-AA-AT-AATTTA-TTAGT-ATGGA-TTG
** * ** * * * *
8120377 TATGGA-TTGATTTATTTTA-AAATATGAATTG
1 -ATTTATTTTAAATAATTTATTAGTATGGATTG
8120408 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
** **
8120440 ATTTATTTTAAA-ATATGGATT-G-ATTTATT-
1 ATTTATTTTAAATA-ATTTATTAGTATGGATTG
* * *
8120469 ATTGTAGTTGTATAGATTGATTTATTTTAAAATATGGATTG
1 ATT-TA-TT-T-TA-AATAATTTA--TT--AGTATGGATTG
8120510 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
8120542 TTTTATTTT--A-AA---A-T--T-TGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120564 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120596 ATTTATTTT--A-AA---A-TA-TA--GATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
8120618 ATTTATTTTAAATAATTTATTAGTATGAATTGATTT
1 ATTTATTTTAAATAATTTATTAGTATG----GATTG
*
8120654 ATTTAATATTTTAAATAATTTATTAGTATGAATTG
1 A-TT--TATTTTAAATAATTTATTAGTATGGATTG
* *
8120689 ATTTATTTTAAAAAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
8120721 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8120753 ATTTATTTTAAA
1 ATTTATTTTAAA
8120765 ATATGGATTG
Statistics
Matches: 441, Mismatches: 43, Indels: 120
0.73 0.07 0.20
Matches are distributed among these distances:
22 43 0.10
23 5 0.01
24 4 0.01
25 8 0.02
26 5 0.01
28 5 0.01
29 11 0.02
30 14 0.03
31 21 0.05
32 223 0.51
33 6 0.01
34 10 0.02
35 13 0.03
36 19 0.04
37 9 0.02
38 6 0.01
39 29 0.07
40 7 0.02
41 3 0.01
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:8120254 original size:54 final size:54
Alignment explanation
Indices: 8120189--8120781 Score: 658
Period size: 54 Copynumber: 11.1 Consensus size: 54
8120179 TTTTAAAATA
8120189 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
8120243 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTT---TAA---A--A-TATGGATTG
*
8120307 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
8120360 ATTTA---T---TAATGTAGTT-GTATGGATTGATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAATATGGATTG
8120408 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
8120462 ATTTA--TT--AT--TGTAGTT-GTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
8120510 ATTTATTTTAAATAATTTATTAGTATGGATTGTTTTATTTTAAAATTTGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
8120564 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * ** * *
8120618 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTA-TTTAATATTTTAAATA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * *** * *
8120671 ATTTATTAGTATGAATTGATTTATT--T-T-AAAAAATTTA--TT--AGTATGAATTG
1 ATTTATT--T-T-AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
8120721 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
8120775 ATTTATT
1 ATTTATT
8120782 ATTGTAGTTT
Statistics
Matches: 462, Mismatches: 38, Indels: 78
0.80 0.07 0.13
Matches are distributed among these distances:
46 10 0.02
47 26 0.06
48 60 0.13
49 3 0.01
50 24 0.05
51 1 0.00
52 8 0.02
53 41 0.09
54 216 0.47
55 5 0.01
56 2 0.00
57 10 0.02
58 3 0.01
59 1 0.00
60 1 0.00
61 1 0.00
63 4 0.01
64 46 0.10
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:8120402 original size:22 final size:22
Alignment explanation
Indices: 8120330--8120521 Score: 107
Period size: 26 Copynumber: 8.0 Consensus size: 22
8120320 AATTTATTAG
8120330 TATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAAA
* ***
8120351 TATGAATTGATTTATTAATGTAGTTG
1 TATGGATTGATTTATT--T-TA-AAA
8120377 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
*
8120399 TATGAATTGATTTATTTTAAATAA
1 TATGGATTGATTTATTTT-AA-AA
* * *
8120423 TTTATTAGTATGGATTGATTTATTTTAAAA
1 --TA-T-GGATTGATTTA-TT---TTAAAA
***
8120453 TATGGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTA-T-TT-TA-AAA
*
8120479 TATAGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
8120501 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
8120522 TAATTTATTA
Statistics
Matches: 130, Mismatches: 23, Indels: 35
0.69 0.12 0.19
Matches are distributed among these distances:
21 15 0.12
22 37 0.28
23 7 0.05
24 7 0.05
25 3 0.02
26 40 0.31
27 3 0.02
28 10 0.08
29 2 0.02
30 2 0.02
31 2 0.02
32 2 0.02
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.52
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:8120424 original size:18 final size:21
Alignment explanation
Indices: 8120330--8120421 Score: 94
Period size: 21 Copynumber: 4.1 Consensus size: 21
8120320 AATTTATTAG
*
8120330 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
**
8120351 TATGAATTGATTTATTAATGTAGTTG
1 TATGAATTGATTTATT--T-TA--AA
*
8120377 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTT-AAA
8120399 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
8120420 TA
1 TA
8120422 ATTTATTAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
21 20 0.34
22 17 0.29
23 2 0.03
24 4 0.07
26 15 0.26
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (21 bp):
TATGAATTGATTTATTTTAAA
Found at i:8120443 original size:18 final size:18
Alignment explanation
Indices: 8120422--8120469 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
8120412 ATTTTAAATA
*
8120422 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
8120440 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
8120462 ATTTATTA
1 ATTTATTA
8120470 TTGTAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:8120655 original size:18 final size:18
Alignment explanation
Indices: 8120632--8120759 Score: 92
Period size: 18 Copynumber: 7.4 Consensus size: 18
8120622 ATTTTAAATA
8120632 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
* * * *
8120650 ATTTATTTAATATTTTAAATA
1 ATTTA-TTAGTA--TGAATTG
8120671 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
***
8120689 ATTTATT--T-T-AAAAA
1 ATTTATTAGTATGAATTG
8120703 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
* *
8120721 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGAATTG
8120735 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
8120753 ATTTATT
1 ATTTATT
8120760 TTAAAATATG
Statistics
Matches: 81, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
14 19 0.23
15 2 0.02
16 4 0.05
17 2 0.02
18 35 0.43
19 5 0.06
20 5 0.06
21 9 0.11
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (18 bp):
ATTTATTAGTATGAATTG
Found at i:8120834 original size:31 final size:31
Alignment explanation
Indices: 8120797--8120855 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8120787 AGTTTTATGG
* * *
8120797 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGCATTGCAAAACTAAA
8120828 ATTATTTAAATCTCAGCATTGCAAAACT
1 ATTATTTAAATCTCAGCATTGCAAAACT
8120856 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
ATTATTTAAATCTCAGCATTGCAAAACTAAA
Found at i:8125908 original size:42 final size:42
Alignment explanation
Indices: 8125849--8125933 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
8125839 TTTATTATCG
8125849 TTTTAAAATGAAATTATTTCAATCATGTTCTAGTTGAATTAA
1 TTTTAAAATGAAATTATTTCAATCATGTTCTAGTTGAATTAA
*
8125891 TTTTAAAATGAAATTATTTCAGTCATGTTCTAGTTGAATTAA
1 TTTTAAAATGAAATTATTTCAATCATGTTCTAGTTGAATTAA
8125933 T
1 T
8125934 GTCAAGTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (42 bp):
TTTTAAAATGAAATTATTTCAATCATGTTCTAGTTGAATTAA
Found at i:8126339 original size:2 final size:2
Alignment explanation
Indices: 8126332--8126357 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8126322 ATTTGGATAC
8126332 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8126358 TAAAGTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8126574 original size:2 final size:2
Alignment explanation
Indices: 8126567--8126605 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8126557 ATTAAAATTA
8126567 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8126606 AACTATTGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8135293 original size:32 final size:32
Alignment explanation
Indices: 8135252--8135347 Score: 120
Period size: 32 Copynumber: 3.0 Consensus size: 32
8135242 GTCCCAAATG
8135252 ACCTATCCATATGTCCCGAATGACATAGGTAA
1 ACCTATCCATATGTCCCGAATGACATAGGTAA
** *
8135284 ACCTATCCATATGTCATGAATGACAAAGGTAA
1 ACCTATCCATATGTCCCGAATGACATAGGTAA
* * * * *
8135316 TCTTGTCCATATGTCCCGAAGGACATTGGTAA
1 ACCTATCCATATGTCCCGAATGACATAGGTAA
8135348 CCTCGACTCT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (32 bp):
ACCTATCCATATGTCCCGAATGACATAGGTAA
Found at i:8144008 original size:15 final size:16
Alignment explanation
Indices: 8143970--8144010 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8143960 ACAGAGCCTC
*
8143970 TGAATCATTCAGCATT
1 TGAATCATTCAGCACT
*
8143986 TGAATCATTCAGCGCT
1 TGAATCATTCAGCACT
8144002 T-AATCATTC
1 TGAATCATTC
8144011 TGAAGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAGCACT
Found at i:8145178 original size:21 final size:21
Alignment explanation
Indices: 8145139--8145220 Score: 130
Period size: 21 Copynumber: 4.0 Consensus size: 21
8145129 GTTTATTTAC
* *
8145139 TGTTGAATG-GAACCATTCAG
1 TGTTGAATGCTAACCGTTCAG
*
8145159 TGCTGAATGCTAACCGTTCAG
1 TGTTGAATGCTAACCGTTCAG
8145180 TGTTGAATGCTAACCGTTCAG
1 TGTTGAATGCTAACCGTTCAG
8145201 TGTTGAATGCTAACCGTTCA
1 TGTTGAATGCTAACCGTTCA
8145221 ACATTTAGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 8 0.14
21 49 0.86
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (21 bp):
TGTTGAATGCTAACCGTTCAG
Found at i:8145287 original size:23 final size:23
Alignment explanation
Indices: 8145261--8145316 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
8145251 ATGAAGACTA
8145261 TGCTGAATGAAACAAAAAAACAC
1 TGCTGAATGAAACAAAAAAACAC
* *
8145284 TGCTGAATAAAACAACAAAACAC
1 TGCTGAATGAAACAAAAAAACAC
8145307 TGCTGAATGA
1 TGCTGAATGA
8145317 TTTAGCATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (23 bp):
TGCTGAATGAAACAAAAAAACAC
Found at i:8145353 original size:27 final size:27
Alignment explanation
Indices: 8145309--8145377 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
8145299 CAAAACACTG
*
8145309 CTGAATGATTTAGCATTAAAGTACATC
1 CTGAATGATTCAGCATTAAAGTACATC
* *
8145336 CTGAATGATTCAGTATTAAAGTACATT
1 CTGAATGATTCAGCATTAAAGTACATC
* *
8145363 CTGAATCATTAAGCA
1 CTGAATGATTCAGCA
8145378 CCCGGTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (27 bp):
CTGAATGATTCAGCATTAAAGTACATC
Found at i:8148113 original size:2 final size:2
Alignment explanation
Indices: 8148106--8148141 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8148096 TTACCTGTGC
*
8148106 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8148142 TGGTCAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8149355 original size:274 final size:274
Alignment explanation
Indices: 8148862--8149415 Score: 1092
Period size: 274 Copynumber: 2.0 Consensus size: 274
8148852 GCAAAGGATG
8148862 TTTT-AGGATCTTTTTGTATTCTGGAGTATTGGTGTGCGTTATTGTTTTTGATAATGCTTCAAAA
1 TTTTGAGGATCTTTTTGTATTCTGGAGTATTGGTGTGCGTTATTGTTTTTGATAATGCTTCAAAA
8148926 GGGTTCTGCCTTCCCATTGGTGCTTCTTGGATCCTCACCCATTCTTTTCGCAAGCCCTGTCAAAA
66 GGGTTCTGCCTTCCCATTGGTGCTTCTTGGATCCTCACCCATTCTTTTCGCAAGCCCTGTCAAAA
8148991 GGTTTTCTTTAACAAAGTATGGTTCTATTGTAGTCTTCACTTTTCAAATAGGAGTTTCAAATCAA
131 GGTTTTCTTTAACAAAGTATGGTTCTATTGTAGTCTTCACTTTTCAAATAGGAGTTTCAAATCAA
8149056 ATTTGGATGTCTTTGCTCGTTCTTTGAGATTTTATTGCAATATTTCATTTCTAAGCATGCATTCT
196 ATTTGGATGTCTTTGCTCGTTCTTTGAGATTTTATTGCAATATTTCATTTCTAAGCATGCATTCT
8149121 GATTTCTCCCTTAA
261 GATTTCTCCCTTAA
8149135 TTTTGAGGATCTTTTTGTATTCTGGAGTATTGGTGTGCGTTATTGTTTTTGATAATGCTTCAAAA
1 TTTTGAGGATCTTTTTGTATTCTGGAGTATTGGTGTGCGTTATTGTTTTTGATAATGCTTCAAAA
8149200 GGGTTCTGCCTTCCCATTGGTGCTTCTTGGATCCTCACCCATTCTTTTCGCAAGCCCTGTCAAAA
66 GGGTTCTGCCTTCCCATTGGTGCTTCTTGGATCCTCACCCATTCTTTTCGCAAGCCCTGTCAAAA
8149265 GGTTTTCTTTAACAAAGTATGGTTCTATTGTAGTCTTCACTTTTCAAATAGGAGTTTCAAATCAA
131 GGTTTTCTTTAACAAAGTATGGTTCTATTGTAGTCTTCACTTTTCAAATAGGAGTTTCAAATCAA
*
8149330 ATTTGGATGTCTTTGCTCGTTCTTTGAGATTTTATTGCAATATTTCATTTCTAAGTATGCATTCT
196 ATTTGGATGTCTTTGCTCGTTCTTTGAGATTTTATTGCAATATTTCATTTCTAAGCATGCATTCT
8149395 GATTTCTCCCTTAA
261 GATTTCTCCCTTAA
8149409 TTTTGAG
1 TTTTGAG
8149416 TAATGTCTTC
Statistics
Matches: 279, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
273 4 0.01
274 275 0.99
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (274 bp):
TTTTGAGGATCTTTTTGTATTCTGGAGTATTGGTGTGCGTTATTGTTTTTGATAATGCTTCAAAA
GGGTTCTGCCTTCCCATTGGTGCTTCTTGGATCCTCACCCATTCTTTTCGCAAGCCCTGTCAAAA
GGTTTTCTTTAACAAAGTATGGTTCTATTGTAGTCTTCACTTTTCAAATAGGAGTTTCAAATCAA
ATTTGGATGTCTTTGCTCGTTCTTTGAGATTTTATTGCAATATTTCATTTCTAAGCATGCATTCT
GATTTCTCCCTTAA
Found at i:8165180 original size:17 final size:17
Alignment explanation
Indices: 8165158--8165190 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8165148 GAATTATTTC
8165158 AGTTGCCAT-GACAATCG
1 AGTTGCC-TCGACAATCG
8165175 AGTTGCCTCGACAATC
1 AGTTGCCTCGACAATC
8165191 AAACTACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (17 bp):
AGTTGCCTCGACAATCG
Found at i:8167740 original size:13 final size:13
Alignment explanation
Indices: 8167722--8167776 Score: 85
Period size: 13 Copynumber: 4.2 Consensus size: 13
8167712 ATTGACTTTT
8167722 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
8167735 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
8167748 CT-GTCAAAGTCAA
1 -TGGTCAAAGTCAA
*
8167761 TGGTCAAAGTTAA
1 TGGTCAAAGTCAA
8167774 TGG
1 TGG
8167777 GTTGACTCAG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
12 1 0.03
13 37 0.95
14 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (13 bp):
TGGTCAAAGTCAA
Found at i:8167796 original size:14 final size:14
Alignment explanation
Indices: 8167777--8167842 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
8167767 AAGTTAATGG
8167777 GTTGACTCAGACGA
1 GTTGACTCAGACGA
* *
8167791 GTTGACTCATATGA
1 GTTGACTCAGACGA
* ** *
8167805 GTTAACTTGGACAA
1 GTTGACTCAGACGA
8167819 GTTGACTC-GAACGA
1 GTTGACTCAG-ACGA
*
8167833 ATTGACTCAG
1 GTTGACTCAG
8167843 TTCAGGGTGG
Statistics
Matches: 38, Mismatches: 12, Indels: 3
0.72 0.23 0.06
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (14 bp):
GTTGACTCAGACGA
Found at i:8173923 original size:200 final size:198
Alignment explanation
Indices: 8173449--8174618 Score: 1350
Period size: 201 Copynumber: 5.8 Consensus size: 198
8173439 CGTTATTTAC
* ** * *
8173449 AAGTATCGCCACAAA-TCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGG
1 AAGTATCGACACAAATTC-AAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* * *
8173513 TACATTTATACCGGTTACATTGTAAATTTACCAATTACATTATAATTATCGGTTTCGATGTTTTT
64 TATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* *
8173578 GGGATCGATACTTTTTAAAAAATGTATCAACA-TTATATGC-TTGCAACCCTTTT-GGCATTAAT
129 GGGATCGATACTTTTT--AAAATGTATCGACACTT-TATGCGTT-C-ACCCTTTTGGGCATTCAT
*
8173640 TTTGGACAAA
189 TCTGGACAAA
** * * *
8173650 AAGTATCGACACAAA-TCTAAAACGTGTCGATACATTATGTTCACCTATTTTAAAATAAAACCGG
1 AAGTATCGACACAAATTC-AAAA-GTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* *
8173714 TATATTTATACCAGTTACATTATAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTTT
64 TATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* * *
8173779 GGAATCGATATTTTTTATAAATGTATCGACACTTTATTCGTTCACCCTTTTGGGCATTCATTCTG
129 GGGATCGATACTTTTTA-AAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTG
8173844 GACAAA
193 GACAAA
* ** * *
8173850 ACGTATCGACACGTCATTCAAAAGTGTCGACACATTATGTAGACCTATTCTGACATAAAACCGGT
1 AAGTATCGACAC-AAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * * * * * * *
8173915 AGATTTATACAGGTTATATTACAAAATTACCTATTACATTATATTTATGGGTTTTGATGTTTTAG
65 ATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
* * * * * * * *
8173980 GGATCGATACTGTTTAAACATGTGTCGATACTTTATGGGTGCACCCTTTTTGG-ATTTTCCTTGT
130 GGATCGATACTTTTTAAA-ATGTATCGACACTTTATGCGTTCACCCTTTTGGGCA--TTCATTCT
* *
8174044 AGACCAA
192 GGACAAA
* * * ** * * * *
8174051 AAGTATCGACACAAATTCCACAAGTGTCGATATATTATGTATATGTATTTTCTCAAAAAACTGGT
1 AAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * *
8174116 TTATTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTA
65 ATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTG
*
8174181 GGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTTACCCTTTTGGGCATTCATTCTGG
130 GGATCGATACTTTTTA-AAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTGG
8174246 ACAAA
194 ACAAA
*
8174251 AAGTATCGACACAACATT-ACAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGG
1 AAGTATCGACACAA-ATTCA-AAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGG
* * * *
8174315 TATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTT
64 TATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* *
8174380 GGGATCGATACTTTTTTAAAAAGTATCGACACTTTATGGGTGT-ACCCTTTTTGGGCATTCATTC
129 GGGATCGATAC-TTTTTAAAATGTATCGACACTTTATGCGT-TCACCC-TTTTGGGCATTCATTC
8174444 TGGACAAA
191 TGGACAAA
* * * * *
8174452 CAGTATTGACACAAATTCCAGAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGT
1 AAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGT
* * ** * * *
8174517 TTAGTTATAATGGTTACATTGTAAATTTACCTATTACATTATATTTAT-GGATTTCGATGTTTCT
65 ATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGG-TTTCGATGTTTTT
* *
8174581 GGGATCGATACTTTTTAAAACTATATCGAGACTTTATG
129 GGGATCGATACTTTTTAAAA-TGTATCGACACTTTATG
8174619 GGAAACTTTA
Statistics
Matches: 826, Mismatches: 122, Indels: 42
0.83 0.12 0.04
Matches are distributed among these distances:
199 13 0.02
200 347 0.42
201 460 0.56
202 6 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (198 bp):
AAGTATCGACACAAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTA
TATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
GATCGATACTTTTTAAAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTGGAC
AAA
Found at i:8174215 original size:401 final size:394
Alignment explanation
Indices: 8173449--8174618 Score: 1439
Period size: 401 Copynumber: 2.9 Consensus size: 394
8173439 CGTTATTTAC
* * ** * *
8173449 AAGTATCGCCACAA-ATCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGG
1 AAGTATCGACACAACAT-TAAAA-GTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGG
* ** * * *
8173513 TACATTTATACCGGTTACATTGTAAATTTACCAATTACATTATAATTATCGGTTTCGATGTTTTT
64 TACATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTT
**
8173578 GGGATCGATACTTTTTAAAAAATGTATC-AACATTATATGCTTGCAACCC-TTTTGGCATTAATT
129 GGGATCGATACTTTTT--AAAATGTATCGAAC-TT-TATGGGTGC-ACCCTTTTTGG-ATT--TT
* *
8173641 -TTG-GACAAAAAGTATCGACACAAA-TCTAAAACGTGTCGATACATTATGT-TCACCTATTTT-
186 CTTGTGACCAAAAGTATCGACACAAATTCCAAAA-GTGTCGATACATTATGTAT-ACCTATTTTC
** * * *
8173701 AAAATAAAACCGGTATATTTATACCAGTTACATTATAAATTTACCTATTACATTATAATTATTGG
249 TCAA-AAAACTGGTTTATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTA-TGG
* *
8173766 TTTCGATGTTTTTGGAATCGATATTTTTTATAAATGTATCGACACTTTATTCGTTCACCCTTTTG
312 TTTCGATGTTTTTGG-ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCCTTTTG
8173831 GGCATTCATTCTGGACAAA
376 GGCATTCATTCTGGACAAA
* ** *
8173850 ACGTATCGACACGTCATTCAAAAGTGTCGACACATTATGTAGACCTATTCTGACATAAAACCGGT
1 AAGTATCGACACAACATT-AAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGT
* * * * *
8173915 AGATTTATACAGGTTATATTACAAAATTACCTATTACATTATATTTATGGGTTTTGATGTTTTAG
65 ACATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
* *
8173980 GGATCGATACTGTTTAAACATGTGTCGATACTTTATGGGTGCACCCTTTTTGGATTTTCCTTGTA
130 GGATCGATACTTTTTAAA-ATGTATCGA-ACTTTATGGGTGCACCCTTTTTGGATTTT-CTTGT-
* * **
8174045 GACCAAAAGTATCGACACAAATTCCACAAGTGTCGATATATTATGTATATGTATTTTCTCAAAAA
191 GACCAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTCTCAAAAA
*
8174110 ACTGGTTTATTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATG
256 ACTGGTTTATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTAT-GGTTTCGATG
*
8174175 TTTTTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTTACCCTTTTGGGCATTCA
320 TTTTT-GGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCA
8174240 TTCTGGACAAA
384 TTCTGGACAAA
8174251 AAGTATCGACACAACATTACAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGT
1 AAGTATCGACACAACATTA-AAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGT
*
8174316 ATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
65 ACATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
* *
8174381 GGATCGATACTTTTTTAAAAAGTATCGACACTTTATGGGTGTACCCTTTTTGGGCATTCATTC-T
130 GGATCGATAC-TTTTTAAAATGTATCGA-ACTTTATGGGTGCACCCTTTTT-GG-ATT--TTCTT
* * * * *
8174445 G-GA-CAAACAGTATTGACACAAATTCCAGAAGTGTCGATACATTATGTAGACCTATTCTCTCAT
189 GTGACCAAA-AGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTCTCAA
* ** * *
8174508 AAAA-TCGGTTTAGTTATAATGGTTACATTGTAAATTTACCTATTACATTATATTTATGGATTTC
253 AAAACT-GGTTTATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATGG-TTTC
* * *
8174572 GATGTTTCTGGGATCGATACTTTTTA-AAACTATATCGAGACTTTATG
316 GATGTTT-TTGGATCGATACTTTTTATAAA-TGTATCGACACTTTATG
8174619 GGAAACTTTA
Statistics
Matches: 673, Mismatches: 70, Indels: 52
0.85 0.09 0.07
Matches are distributed among these distances:
397 2 0.00
399 13 0.02
400 31 0.05
401 591 0.88
402 28 0.04
403 5 0.01
404 1 0.00
405 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (394 bp):
AAGTATCGACACAACATTAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTA
CATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGG
GATCGATACTTTTTAAAATGTATCGAACTTTATGGGTGCACCCTTTTTGGATTTTCTTGTGACCA
AAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTATACCTATTTTCTCAAAAAACTGG
TTTATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATGGTTTCGATGTTTTTG
GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCCTTTTGGGCATTCATTCTGGA
CAAA
Found at i:8174639 original size:15 final size:15
Alignment explanation
Indices: 8174619--8174657 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8174609 AGACTTTATG
*
8174619 GGAAACTTTAAGTTT
1 GGAAACTTTAAGTAT
*
8174634 GGAAACTTTATGTAT
1 GGAAACTTTAAGTAT
*
8174649 GAAAACTTT
1 GGAAACTTT
8174658 GTTGTGGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (15 bp):
GGAAACTTTAAGTAT
Found at i:8176168 original size:18 final size:18
Alignment explanation
Indices: 8176114--8176168 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
8176104 TGTTTGGATC
* * *
8176114 ATCATAATCATAATCATC
1 ATCATCATCATATTCATT
*
8176132 ATCATCATCATATTGATT
1 ATCATCATCATATTCATT
* *
8176150 ATCATCTTCATCTTCATT
1 ATCATCATCATATTCATT
8176168 A
1 A
8176169 ACCTCTTGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.22, G:0.02, T:0.42
Consensus pattern (18 bp):
ATCATCATCATATTCATT
Found at i:8178344 original size:200 final size:199
Alignment explanation
Indices: 8177655--8178811 Score: 1251
Period size: 200 Copynumber: 5.8 Consensus size: 199
8177645 ATTTAAAATG
* * * * *
8177655 GTATCGACACAAATTTAACAATTGTCGATACTTTATG-ATGACCAATTTTCTCATAAAACCGGTC
1 GTATCGACACAAA-TTAACAAGTGTCGATACATTATGTA-GACCTATTCTCTCATAAAACCGGTA
* * ** * * *
8177719 TATTTATATCATTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGG
64 TATGTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGG
* * * *
8177784 GATCAACACTTTTTAAAAATGTATCGACACTTTATGCGTTCAACCCTTTT-GGTATTCATTCTGG
129 GATCGACACTTTTTATAAATGTATCGACACTTAATGCGTTC-ACCCTTTTGGGCATTCATTCTGG
*
8177848 A-TAAAA
193 ACAAAAA
* * *
8177854 GTATCGACACAAATTACACAAGCGTCAATACATGT-TGTAGACCTATTCTCTCATAAAACTGGTA
1 GTATCGACACAAATTA-ACAAGTGTCGATACAT-TATGTAGACCTATTCTCTCATAAAACCGGTA
** * ** * * * *
8177918 TA-GTTATATTGGTTTCATTTTAAATTTACCTATTACATTATATTTATGGGTTTTGATATTTCTG
64 TATG-TATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTG
* * * * * * * *
8177982 GTATTGACACTTTTTATAAATATATCGAAACTTTATGTGTTCATCCTTTTGGTCATTCATTCTGG
128 GGATCGACACTTTTTATAAATGTATCGACACTTAATGCGTTCACCCTTTTGGGCATTCATTCTGG
8178047 ACAAAAA
193 ACAAAAA
* * * *
8178054 GTATCGACACAAA--AAAAAGTGTCGATATATTATGTAGACCTATTCTCACATAAAACAGGTATA
1 GTATCGACACAAATTAACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTATA
* * *
8178117 TTTATACCGGTTATATT-ACAAAATTACCTATTACATTATAATTATGGGTTTAGATGTTTTTGGG
66 TGTATACCGGTTACATTGA-AAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGGG
* * *
8178181 ATCAACACTTTTTATAAATGTATCGACACTTAATG-GTGCACCCTTTTTGGGCATTCCTTCTGGA
130 ATCGACACTTTTTATAAATGTATCGACACTTAATGCGTTCACCC-TTTTGGGCATTCATTCTGGA
*
8178245 CCAAAA
194 CAAAAA
*
8178251 GTATCGATACAAATTACACAAGTGTCGATACA-TATTGTAGACCTATTCTCTCATAAAACCGGTA
1 GTATCGACACAAATTA-ACAAGTGTCGATACATTA-TGTAGACCTATTCTCTCATAAAACCGGTA
* * * *
8178315 TATGTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGGTGTTTATAG
64 TATGTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGG
* * * ** * * *
8178380 GATCGATACTTGTCTATAAATGTAACGACACTTGTTGCGTGCTCCCTTTTTGGGCATTCCTTCTG
129 GATCGACACTT-TTTATAAATGTATCGACACTTAATGCGTTCACCC-TTTTGGGCATTCATTCTG
*
8178445 GACAAACA
192 GACAAAAA
* * * *
8178453 GTATCGACACAAATTACATAAGTGTCGATACATTATGTAGACCTATTCTTTCATAAAATCGGTTT
1 GTATCGACACAAATTA-ACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* * * * * * *
8178518 A-GTTATACCGGTTACATTGTAAATTTACCTATTACATTATATTTACGGGTTTCGATATTTCTGG
65 ATG-TATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGG
** * * * * *
8178582 GATCGACACTTTCAATAAATGTATCGACACTTTATTCGTTCATCATTTTGTGCATTCATTCTGGA
129 GATCGACACTTTTTATAAATGTATCGACACTTAATGCGTTCACCCTTTTGGGCATTCATTCTGGA
8178647 CAAAAA
194 CAAAAA
* * * * * **
8178653 ATATCGACACATAATGAAAAAGTG-CTGATACATTATGTAGACCCATTCTCACATAAAACTAGTA
1 GTATCGACACA-AATTAACAAGTGTC-GATACATTATGTAGACCTATTCTCTCATAAAACCGGTA
* * *
8178717 TATTTATACCGGCTATATT-ACAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTG
64 TATGTATACCGGTTACATTGA-AAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTG
*
8178781 GGATCGACACTTTTTATAACTGTATCGACAC
128 GGATCGACACTTTTTATAAATGTATCGACAC
8178812 ATATGCTTAC
Statistics
Matches: 809, Mismatches: 126, Indels: 45
0.83 0.13 0.05
Matches are distributed among these distances:
196 7 0.01
197 156 0.19
198 11 0.01
199 153 0.19
200 275 0.34
201 52 0.06
202 153 0.19
203 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (199 bp):
GTATCGACACAAATTAACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTATA
TGTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGGGA
TCGACACTTTTTATAAATGTATCGACACTTAATGCGTTCACCCTTTTGGGCATTCATTCTGGACA
AAAA
Found at i:8178593 original size:402 final size:394
Alignment explanation
Indices: 8177655--8178811 Score: 1303
Period size: 402 Copynumber: 2.9 Consensus size: 394
8177645 ATTTAAAATG
* * * *
8177655 GTATCGACACAAATTTAACAATTGTCGATACTTTATG-ATGACCAATT-TTCTCATAAAACCGGT
1 GTATCGACACAAA-TTAAAAAGTGTCGATACATTATGTA-GACCTATTCTT-TCATAAAA-CGGT
* * ** *
8177718 CTATTTATATCATTTACATTGTAAATTTACCTATTACATTATAATTATC-GGTTTTGATGTTTTT
62 ATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTA-CGGGTTTAGATGTTTTT
* * *
8177782 GGGATCAACACTTTTTAAAAATGTATCGACACTTTATGCGTTCAACCCTTTT-GGTATTCATTCT
126 GGGATCAACACTTTTTATAAATGTATCGACACTTAATG-GTTC-ACCCTTTTGGGCATTCATTCT
* * *
8177846 GGA-TAAAAGTATCGACACAAATTACACAAGCGTCAATACATGTTGTAGACCTATTCTCTCATAA
189 GGACAAAAAGTATCGACACAAATTACACAAGTGTCGATACAT-TTGTAGACCTATTCTCTCATAA
** * * * *
8177910 AACTGGTATA-GTTATATTGGTTTCATTTTAAATTTACCTATTACATTATATTTATGGGTTTTGA
253 AACTGGTATATG-TATACCGGTTACA-TTAAAAATTACCTATTACATTATAATTATGGGTTTTGA
* * * * * * * *
8177974 TATTTCTGGTATTGACACTTTTTATAAATATATCGAAACTTTATGTGTTCATCCTTTTGGTCATT
316 TGTTTATGG-ATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCATCCTTTTGGGCATT
8178039 CATTCTGGACAAAAA
380 CATTCTGGACAAAAA
* **
8178054 GTATCGACACAAA--AAAAAGTGTCGATATATTATGTAGACCTATTCTCACATAAAACAGGTATA
1 GTATCGACACAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTTTCATAAAAC-GGTATA
* ** * *
8178117 TTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTAGATGTTTTTGGGA
65 TTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTACGGGTTTAGATGTTTTTGGGA
* * *
8178182 TCAACACTTTTTATAAATGTATCGACACTTAATGGTGCACCCTTTTTGGGCATTCCTTCTGGACC
130 TCAACACTTTTTATAAATGTATCGACACTTAATGGTTCACCC-TTTTGGGCATTCATTCTGGACA
* *
8178247 AAAAGTATCGATACAAATTACACAAGTGTCGATACATATTGTAGACCTATTCTCTCATAAAACCG
194 AAAAGTATCGACACAAATTACACAAGTGTCGATACAT-TTGTAGACCTATTCTCTCATAAAACTG
* *
8178312 GTATATGTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGGTGTTTA
258 GTATATGTATACCGGTTACATT-AAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTA
* * * *
8178377 TAGGATCGATACTTGTCTATAAATGTAACGACACTTGT-TGCGTGC-TCCCTTTTTGGGCATTCC
322 T-GGATCGACACTT-TTTATAAATGTATCGACACTT-TATGCGTGCAT-CC-TTTTGGGCATTCA
*
8178440 TTCTGGACAAACA
382 TTCTGGACAAAAA
* *
8178453 GTATCGACACAAATTACATAAGTGTCGATACATTATGTAGACCTATTCTTTCATAAAATCGGTTT
1 GTATCGACACAAATTA-AAAAGTGTCGATACATTATGTAGACCTATTCTTTCATAAAA-CGGTAT
* * * * *
8178518 AGTTATACCGGTTACATTGTAAATTTACCTATTACATTATATTTACGGGTTTCGATATTTCTGGG
64 ATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTACGGGTTTAGATGTTTTTGGG
* ** * * * * *
8178583 ATCGACACTTTCAATAAATGTATCGACACTTTATTCGTTCATCATTTTGTGCATTCATTCTGGAC
129 ATCAACACTTTTTATAAATGTATCGACAC-TTAATGGTTCACCCTTTTGGGCATTCATTCTGGAC
* * * * *
8178648 AAAAAATATCGACACATAATGA-AAAAGTG-CTGATACATTATGTAGACCCATTCTCACATAAAA
193 AAAAAGTATCGACACA-AATTACACAAGTGTC-GATACATT-TGTAGACCTATTCTCTCATAAAA
* * * *
8178711 CTAGTATATTTATACCGGCTATATTACAAAATTACCTATTACATTATAATTATGGGTTTTGATGT
255 CTGGTATATGTATACCGGTTACATTA-AAAATTACCTATTACATTATAATTATGGGTTTTGATGT
* *
8178776 TTTTGGGATCGACACTTTTTATAACTGTATCGACAC
319 TTAT-GGATCGACACTTTTTATAAATGTATCGACAC
8178812 ATATGCTTAC
Statistics
Matches: 641, Mismatches: 94, Indels: 44
0.82 0.12 0.06
Matches are distributed among these distances:
394 4 0.01
395 8 0.01
396 138 0.22
397 122 0.19
398 27 0.04
399 50 0.08
401 20 0.03
402 258 0.40
403 14 0.02
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (394 bp):
GTATCGACACAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTTTCATAAAACGGTATAT
TTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTACGGGTTTAGATGTTTTTGGGAT
CAACACTTTTTATAAATGTATCGACACTTAATGGTTCACCCTTTTGGGCATTCATTCTGGACAAA
AAGTATCGACACAAATTACACAAGTGTCGATACATTTGTAGACCTATTCTCTCATAAAACTGGTA
TATGTATACCGGTTACATTAAAAATTACCTATTACATTATAATTATGGGTTTTGATGTTTATGGA
TCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCATCCTTTTGGGCATTCATTCTGGACA
AAAA
Found at i:8179185 original size:19 final size:19
Alignment explanation
Indices: 8179161--8179205 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
8179151 TTACATCCAC
8179161 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
8179180 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
8179199 ATACAAA
1 ATACAAA
8179206 TTTAACTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:8180799 original size:18 final size:18
Alignment explanation
Indices: 8180776--8180850 Score: 132
Period size: 18 Copynumber: 4.2 Consensus size: 18
8180766 TCCTACTCAT
*
8180776 TTCCTCCATCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
8180794 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
*
8180812 TTCCTCCCTCTTTTATTC
1 TTCCTCCCTCTTTTCTTC
8180830 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
8180848 TTC
1 TTC
8180851 ATATTTTTTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.03, C:0.41, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCCTCTTTTCTTC
Found at i:8181079 original size:33 final size:33
Alignment explanation
Indices: 8181034--8181100 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
8181024 CCATCTTAAG
*
8181034 TTCACCCCTCAACTCCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
*
8181067 TTCACCCTTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
8181100 T
1 T
8181101 CCATCTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.22, C:0.46, G:0.00, T:0.31
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:8181095 original size:18 final size:18
Alignment explanation
Indices: 8181042--8181095 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
8181032 AGTTCACCCC
*
8181042 TCAACTCCTCAACTTCTT
1 TCAACACCTCAACTTCTT
* * *
8181060 TCACCACTTC-AC--CCT
1 TCAACACCTCAACTTCTT
8181075 TCAACACCTCAACTTCTT
1 TCAACACCTCAACTTCTT
8181093 TCA
1 TCA
8181096 CCACTCCATC
Statistics
Matches: 26, Mismatches: 7, Indels: 6
0.67 0.18 0.15
Matches are distributed among these distances:
15 10 0.38
16 2 0.08
17 2 0.08
18 12 0.46
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (18 bp):
TCAACACCTCAACTTCTT
Found at i:8181279 original size:15 final size:15
Alignment explanation
Indices: 8181259--8181291 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8181249 ACTCTGTTTT
8181259 CCCTCACCGCCATCC
1 CCCTCACCGCCATCC
*
8181274 CCCTCACCGTCATCC
1 CCCTCACCGCCATCC
8181289 CCC
1 CCC
8181292 AATACAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.67, G:0.06, T:0.15
Consensus pattern (15 bp):
CCCTCACCGCCATCC
Found at i:8181598 original size:22 final size:23
Alignment explanation
Indices: 8181570--8181625 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
8181560 AACCTGCATT
8181570 TATAATAAAAT-TTATAATTTTA
1 TATAATAAAATATTATAATTTTA
* *
8181592 TATAATAACTATATTATCATTTTA
1 TATAATAA-AATATTATAATTTTA
*
8181616 TATAAAAAAA
1 TATAATAAAA
8181626 CAAAAATGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.29
23 3 0.11
24 17 0.61
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATAAAATATTATAATTTTA
Found at i:8183919 original size:162 final size:165
Alignment explanation
Indices: 8183652--8184143 Score: 643
Period size: 162 Copynumber: 2.9 Consensus size: 165
8183642 TTCGAAACCG
* *
8183652 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGACCGATACATTGTTATAAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
* *
8183717 TTATAGACGCTAAAACTGCTTCTCTTTTACATTCACAAAGTGTCGATACTTATATTAAAGTATCG
66 TTATAGACGCTAAAAATGCTTCTCTTTTAAATT-ACAAAGTGTCGATACTTATATTAAAGTATCG
* *
8183782 ACACTTTAAATATATATGGTCGCTCTA-TAC-C-A-
130 ACACTTTAAATATATCTGGTCGCTCTAGAACGCTAC
* * *
8183814 GTTTTGTCATATTTTTACTTGTTATATCGTTATGGATCGATATATTTTTATAAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
*
8183879 TTATAGACGCTAAAAATGCTTCTCTTTTAAATTAACAAAGTGTCGATACTTATATTAAAGTATCA
66 TTATAGACGCTAAAAATGCTTCTCTTTTAAATT-ACAAAGTGTCGATACTTATATTAAAGTATCG
8183944 ACAC-TTACAATATATCTGGTCGCTCTAGAACGGTTGTCTTTTAGATACC
130 ACACTTTA-AATATATCTGGTCGCTCTAGAAC----G-C-------TA-C
* * *
8183993 GATTTTTTCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTGTTATAAAATATCGACAC
1 G-TTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACAC
* *
8184058 TTTATAGAAGATAAAAATGCTTCTCTTTTAAATCTACAAAGTGTCGATACTTATATTAAAGTATC
65 TTTATAGACGCTAAAAATGCTTCTCTTTTAAAT-TACAAAGTGTCGATACTTATATTAAAGTATC
*
8184123 GACACTTTCAATATATCTGGT
129 GACACTTTAAATATATCTGGT
8184144 AGCGCCTTAC
Statistics
Matches: 288, Mismatches: 21, Indels: 24
0.86 0.06 0.07
Matches are distributed among these distances:
161 3 0.01
162 143 0.50
163 2 0.01
169 1 0.00
177 1 0.00
179 1 0.00
180 134 0.47
181 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (165 bp):
GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
TTATAGACGCTAAAAATGCTTCTCTTTTAAATTACAAAGTGTCGATACTTATATTAAAGTATCGA
CACTTTAAATATATCTGGTCGCTCTAGAACGCTAC
Found at i:8184122 original size:180 final size:180
Alignment explanation
Indices: 8183815--8184247 Score: 561
Period size: 180 Copynumber: 2.4 Consensus size: 180
8183805 TCTATACCAG
* * * *
8183815 TTTTGTCATATTTTTACTTGTTATATCGTTATGGATCGATATATTTTTATAAAGTATCGACACTT
1 TTTTATCATATTTTTACCTGTTATATCGTTATGGATCGATACA-TTTTATAAAATATCGACACTT
* *
8183880 TATAGACGCTAAAAATGCTTCTCTTTTAAATTAACAAAGTGTCGATACTTATATTAAAGTATCAA
65 TATAGAAGATAAAAATGCTTCTCTTTTAAATTAACAAAGTGTCGATACTTATATTAAAGTATCAA
*
8183945 CACTTACAATATATCTGGT-CG-CTCTAGAACGG-TTGTCTTTTAGATACCGA
130 CACTTACAATATATCTGGTACGCCT-TA-AACGGTTTGTCTTTTAGAGACCGA
* *
8183995 TTTTTTCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTGTTATAAAATATCGACACTT
1 TTTTATCATATTTTTACCTGTTATATCGTTATGGATCGATACATT-TTATAAAATATCGACACTT
*
8184060 TATAGAAGATAAAAATGCTTCTCTTTTAAATCT-ACAAAGTGTCGATACTTATATTAAAGTATCG
65 TATAGAAGATAAAAATGCTTCTCTTTTAAAT-TAACAAAGTGTCGATACTTATATTAAAGTATCA
* ** * *
8184124 ACACTTTCAATATATCTGGTAGCGCCTTACCCGGTTTTGTCTTTTCGAGACCGG
129 ACACTTACAATATATCTGGTA-CGCCTTAAACGG-TTTGTCTTTTAGAGACCGA
* ** * **
8184178 TTTTATCATATTTTTTCCTGTTATATTATTGTAAATCGATACATATTTATAAAGA-ATCGACACT
1 TTTTATCATATTTTTACCTGTTATATCGTTATGGATCGATACAT-TTTATAAA-ATATCGACACT
8184242 TTATAG
64 TTATAG
8184248 GCGCTAAAAC
Statistics
Matches: 223, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
179 2 0.01
180 135 0.61
181 4 0.02
182 4 0.02
183 76 0.34
184 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (180 bp):
TTTTATCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTATAAAATATCGACACTTT
ATAGAAGATAAAAATGCTTCTCTTTTAAATTAACAAAGTGTCGATACTTATATTAAAGTATCAAC
ACTTACAATATATCTGGTACGCCTTAAACGGTTTGTCTTTTAGAGACCGA
Found at i:8184277 original size:12 final size:12
Alignment explanation
Indices: 8184260--8184298 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
8184250 GCTAAAACTG
8184260 ATTCTTCTTTAA
1 ATTCTTCTTTAA
8184272 ATTCTTCTTTAA
1 ATTCTTCTTTAA
*
8184284 ATTCTTCTTTTA
1 ATTCTTCTTTAA
8184296 ATT
1 ATT
8184299 GTTCGTGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTCTTCTTTAA
Found at i:8187640 original size:30 final size:30
Alignment explanation
Indices: 8187606--8187683 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
8187596 TTATATGAGT
* *
8187606 TATGTGATAAAGTTATGGAAATGATATGTC
1 TATGTGATAAAGTTATGAAAATAATATGTC
*
8187636 TATGTGATAAAGGTATGAAAATAATATGTC
1 TATGTGATAAAGTTATGAAAATAATATGTC
* *
8187666 TACGTGATACAAATTATG
1 TATGTGATA-AAGTTATG
8187684 TGAATTGTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 35 0.85
31 6 0.15
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (30 bp):
TATGTGATAAAGTTATGAAAATAATATGTC
Found at i:8187922 original size:23 final size:23
Alignment explanation
Indices: 8187890--8187956 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
8187880 TTATTATATG
8187890 GCACTACGGTGCAATTCTACGCA
1 GCACTACGGTGCAATTCTACGCA
* **
8187913 GCACTCCGGTGCAATTCTACGTG
1 GCACTACGGTGCAATTCTACGCA
* * *
8187936 GCACTTCGATGCAATTATACG
1 GCACTACGGTGCAATTCTACG
8187957 AGCTGTGGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (23 bp):
GCACTACGGTGCAATTCTACGCA
Found at i:8194573 original size:30 final size:30
Alignment explanation
Indices: 8194539--8194607 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
8194529 TTATATGAGT
* *
8194539 TATGTGATAAAGGTATGGAAATGATATGTC
1 TATGTGATAAAGGTATGAAAATAATATGTC
*
8194569 TATGTGATAAAGGTATGAAAATAATATTTC
1 TATGTGATAAAGGTATGAAAATAATATGTC
*
8194599 TACGTGATA
1 TATGTGATA
8194608 CAAATTATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (30 bp):
TATGTGATAAAGGTATGAAAATAATATGTC
Found at i:8194844 original size:23 final size:22
Alignment explanation
Indices: 8194817--8194885 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
8194807 CATTATTATA
8194817 TGGCACTATGGTGCAATTCTACG
1 TGGCACT-TGGTGCAATTCTACG
** *
8194840 TGGCACTCCAGTGCAATTCTATG
1 TGGCACT-TGGTGCAATTCTACG
*
8194863 TGGCACTTCGGTGCAATTATACG
1 TGGCACTT-GGTGCAATTCTACG
8194886 AGCTGTGGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (22 bp):
TGGCACTTGGTGCAATTCTACG
Found at i:8195683 original size:16 final size:16
Alignment explanation
Indices: 8195662--8195695 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8195652 TAATTTCAAA
8195662 TAAAAT-AATACATATT
1 TAAAATAAATA-ATATT
8195678 TAAAATAAATAATATT
1 TAAAATAAATAATATT
8195694 TA
1 TA
8195696 TTCATTTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAATAAATAATATT
Found at i:8196876 original size:22 final size:22
Alignment explanation
Indices: 8196850--8196906 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8196840 ATACAGCTCA
* *
8196850 TATTTTTTTAATT-ATATTCTTT
1 TATTTTTTTAATTGAGA-TATTT
*
8196872 TATTTTTATAATTGAGATATTT
1 TATTTTTTTAATTGAGATATTT
*
8196894 AATTTTTTTAATT
1 TATTTTTTTAATT
8196907 TAATTTGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 27 0.93
23 2 0.07
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TATTTTTTTAATTGAGATATTT
Found at i:8196928 original size:44 final size:43
Alignment explanation
Indices: 8196851--8197003 Score: 112
Period size: 44 Copynumber: 3.5 Consensus size: 43
8196841 TACAGCTCAT
** * * *
8196851 ATTTTTTTAAT-TATATTCTTTTATTTTTATAATTGAGATATTTA
1 ATTTTTTTAATCTA-ATT-TTTTACCTTTGTAATTGAGACACTTA
* * *
8196895 ATTTTTTTAATTTAATTTGTTTACCTTTGTAATTGTGACCCTTA
1 ATTTTTTTAATCTAATTT-TTTACCTTTGTAATTGAGACACTTA
* * * * * *
8196939 ATTTTTTTAATCTCATTTTTTACCTATATAACTGATGTCTC-TA
1 ATTTTTTTAATCTAATTTTTTACCTTTGTAATTGA-GACACTTA
*
8196982 ATTTTTTTAATATAATATTTTT
1 ATTTTTTTAATCTAAT-TTTTT
8197004 TTTATAATTG
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
43 30 0.34
44 56 0.64
45 2 0.02
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (43 bp):
ATTTTTTTAATCTAATTTTTTACCTTTGTAATTGAGACACTTA
Found at i:8196984 original size:43 final size:44
Alignment explanation
Indices: 8196892--8196997 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 44
8196882 ATTGAGATAT
* * * *
8196892 TTAATTTTTTTAATTTAATTTGTTTACCTTTGTAATTGTGACCC
1 TTAATTTTTTTAATCTAATTTGTTTACCTATATAACTGTGACCC
* * *
8196936 TTAATTTTTTTAATCTCATTT-TTTACCTATATAACTGATGTCTC
1 TTAATTTTTTTAATCTAATTTGTTTACCTATATAACTG-TGACCC
*
8196980 -TAATTTTTTTAATATAAT
1 TTAATTTTTTTAATCTAAT
8196998 ATTTTTTTTA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 29 0.56
44 23 0.44
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (44 bp):
TTAATTTTTTTAATCTAATTTGTTTACCTATATAACTGTGACCC
Found at i:8200382 original size:43 final size:43
Alignment explanation
Indices: 8200321--8200404 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
8200311 ACTATTATAA
*
8200321 ATTTAAATCTCTGATTGAGGCCGAAATGCAACTGGTCTGTGCT
1 ATTTAAATCTCTGATTGAGACCGAAATGCAACTGGTCTGTGCT
* *
8200364 ATTTAAATCTCTGATTGAGACCGTAGTGCAACTGGTCTGTG
1 ATTTAAATCTCTGATTGAGACCGAAATGCAACTGGTCTGTG
8200405 TTAGTGGAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
ATTTAAATCTCTGATTGAGACCGAAATGCAACTGGTCTGTGCT
Found at i:8201236 original size:17 final size:17
Alignment explanation
Indices: 8201214--8201252 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8201204 ATATATTTAT
8201214 TAATATTTCTT-ATAATA
1 TAATATTT-TTAATAATA
*
8201231 TAATATTTTTAATATTA
1 TAATATTTTTAATAATA
8201248 TAATA
1 TAATA
8201253 AAATAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TAATATTTTTAATAATA
Found at i:8201494 original size:31 final size:30
Alignment explanation
Indices: 8201439--8201557 Score: 81
Period size: 31 Copynumber: 4.0 Consensus size: 30
8201429 TTTTAATAAA
8201439 AATA-TTTAAAATATTCTAAT-TAATATTTTT
1 AATATTTTAAAATA-T-TAATATAATATTTTT
****
8201469 AATATTTTAAAAATATTAATATAATAAAAAT
1 AATATTTT-AAAATATTAATATAATATTTTT
*
8201500 AATATTTTAATAATA--GATA-AAT-TATTTT
1 AATATTTTAA-AATATTAATATAATAT-TTTT
* *
8201528 AATATTTTAAAATAATAATATTA-ATTTTT
1 AATATTTTAAAATATTAATATAATATTTTT
8201557 A
1 A
8201558 TGATAAATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
27 4 0.06
28 14 0.20
29 11 0.16
30 12 0.17
31 22 0.32
32 6 0.09
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (30 bp):
AATATTTTAAAATATTAATATAATATTTTT
Found at i:8201531 original size:28 final size:28
Alignment explanation
Indices: 8201465--8201555 Score: 87
Period size: 28 Copynumber: 3.1 Consensus size: 28
8201455 TAATTAATAT
*
8201465 TTTTAATATTTTAAAAATATTAATATAATAA
1 TTTTAATATTTT-AAAATAATAATAT--TAA
***
8201496 AAATAATATTTTAATAATAGATAA-ATT-A
1 TTTTAATATTTTAA-AATA-ATAATATTAA
8201524 TTTTAATATTTTAAAATAATAATATTAA
1 TTTTAATATTTTAAAATAATAATATTAA
8201552 TTTT
1 TTTT
8201556 TATGATAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
26 4 0.08
27 7 0.14
28 17 0.35
29 1 0.02
30 2 0.04
31 15 0.31
32 3 0.06
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (28 bp):
TTTTAATATTTTAAAATAATAATATTAA
Found at i:8201551 original size:22 final size:22
Alignment explanation
Indices: 8201484--8201572 Score: 63
Period size: 22 Copynumber: 3.8 Consensus size: 22
8201474 TTTAAAAATA
* * *
8201484 TTAATATAATAAAAATAATATT
1 TTAAAATAATAATATTAATATT
8201506 TTAATAATAGATAAATTATTTTAATATT
1 TTAA-AATA-AT-AA-TA--TTAATATT
8201534 TTAAAATAATAATATTAAT-TT
1 TTAAAATAATAATATTAATATT
**
8201555 TTATGATAAATAATATTA
1 TTAAAAT-AATAATATTA
8201573 TTTATTGCAT
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
21 7 0.13
22 19 0.35
23 3 0.05
24 4 0.07
25 4 0.07
26 3 0.05
27 4 0.07
28 11 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
TTAAAATAATAATATTAATATT
Found at i:8201722 original size:14 final size:14
Alignment explanation
Indices: 8201688--8201722 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8201678 AAATGTAATT
* *
8201688 CATTTTACGGAAAA
1 CATTTTCCGAAAAA
8201702 CATTTTCCGAAAAA
1 CATTTTCCGAAAAA
8201716 CATTTTC
1 CATTTTC
8201723 AGTAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (14 bp):
CATTTTCCGAAAAA
Found at i:8201729 original size:14 final size:14
Alignment explanation
Indices: 8201698--8201731 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8201688 CATTTTACGG
*
8201698 AAAACATTTTCCGA
1 AAAACATTTTCAGA
*
8201712 AAAACATTTTCAGT
1 AAAACATTTTCAGA
8201726 AAAACA
1 AAAACA
8201732 AAACGGACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (14 bp):
AAAACATTTTCAGA
Found at i:8201997 original size:3 final size:3
Alignment explanation
Indices: 8201978--8202054 Score: 84
Period size: 3 Copynumber: 26.0 Consensus size: 3
8201968 ATTACAAATA
* *
8201978 ATT ATT ATC ACT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
8202025 GTT ATT ACT ATT TTT AGT ATT AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8202055 TTTTTCATCA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:8207562 original size:23 final size:23
Alignment explanation
Indices: 8207516--8207571 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
8207506 AAAGGTGAAC
* *
8207516 TAAATGAAAAGTGTAAACATCAAA
1 TAAA-GAAAAGAGTAAAAATCAAA
8207540 TTAAAGAAAAGAG-AAAAATCAAA
1 -TAAAGAAAAGAGTAAAAATCAAA
*
8207563 GAAAGAAAA
1 TAAAGAAAA
8207572 AAACAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.29
23 9 0.32
24 7 0.25
25 4 0.14
ACGTcount: A:0.66, C:0.05, G:0.14, T:0.14
Consensus pattern (23 bp):
TAAAGAAAAGAGTAAAAATCAAA
Found at i:8207563 original size:18 final size:17
Alignment explanation
Indices: 8207537--8207583 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
8207527 TGTAAACATC
*
8207537 AAATTAAAGAAAAGAGAA
1 AAATCAAAGAAAAGA-AA
8207555 AAATCAAAG-AAAGAAA
1 AAATCAAAGAAAAGAAA
* *
8207571 AAAACAAATAAAA
1 AAATCAAAGAAAA
8207584 AAATAAGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 9 0.36
17 8 0.32
18 8 0.32
ACGTcount: A:0.77, C:0.04, G:0.11, T:0.09
Consensus pattern (17 bp):
AAATCAAAGAAAAGAAA
Found at i:8207571 original size:15 final size:15
Alignment explanation
Indices: 8207551--8207661 Score: 56
Period size: 15 Copynumber: 7.4 Consensus size: 15
8207541 TAAAGAAAAG
*
8207551 AGAAAAATCAAAGAA
1 AGAAAAAACAAAGAA
*
8207566 AGAAAAAAACAAATAA
1 AG-AAAAAACAAAGAA
*
8207582 A-AAAATAAGCAATG--
1 AGAAAA-AA-CAAAGAA
*
8207596 AGAAAAGAAGTAAAG-A
1 AGAAAA-AA-CAAAGAA
*
8207612 A-AAAAATCAAAG--
1 AGAAAAAACAAAGAA
8207624 AGAAAAAACAAAGAAAA
1 AGAAAAAACAAAG--AA
*
8207641 AGAAAAAAGAAAGAA
1 AGAAAAAACAAAGAA
8207656 AGAAAA
1 AGAAAA
8207662 GAAGACAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.01
13 14 0.19
14 6 0.08
15 26 0.35
16 16 0.21
17 12 0.16
ACGTcount: A:0.76, C:0.05, G:0.14, T:0.05
Consensus pattern (15 bp):
AGAAAAAACAAAGAA
Found at i:8207573 original size:17 final size:18
Alignment explanation
Indices: 8207537--8207583 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
8207527 TGTAAACATC
* *
8207537 AAATTAAAGAAAAGAGAA
1 AAATCAAAGAAAAGAAAA
8207555 AAATCAAAG-AAAGAAAA
1 AAATCAAAGAAAAGAAAA
*
8207572 AAA-CAAATAAAA
1 AAATCAAAGAAAA
8207584 AAATAAGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 4 0.16
17 13 0.52
18 8 0.32
ACGTcount: A:0.77, C:0.04, G:0.11, T:0.09
Consensus pattern (18 bp):
AAATCAAAGAAAAGAAAA
Found at i:8207623 original size:13 final size:12
Alignment explanation
Indices: 8207607--8207652 Score: 56
Period size: 13 Copynumber: 3.6 Consensus size: 12
8207597 GAAAAGAAGT
8207607 AAAGAAAAAAATC
1 AAAGAAAAAAA-C
8207620 AAAGAGAAAAAAC
1 AAAGA-AAAAAAC
*
8207633 AAAGAAAAAGAAA
1 AAAGAAAAA-AAC
8207646 AAAGAAA
1 AAAGAAA
8207653 GAAAGAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 4 0.13
13 20 0.67
14 6 0.20
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.02
Consensus pattern (12 bp):
AAAGAAAAAAAC
Found at i:8212386 original size:39 final size:39
Alignment explanation
Indices: 8212271--8212738 Score: 542
Period size: 39 Copynumber: 12.1 Consensus size: 39
8212261 TTCAAGAAAC
* *
8212271 TATA-ATATATTTTCAAAAGTGATTTCGAAAACTATATAT
1 TATATATATATTTTCAAAA-TGTTTTCAAAAACTATATAT
** *
8212310 TATATATAGGTTTTCAAAATATTTT-AAAAACTATATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
*
8212348 ATATATATATATATATT-AAAATGGTTTCAAAAACTATATA-
1 -TATATATATAT-T-TTCAAAATGTTTTCAAAAACTATATAT
*
8212388 T-TATATATATTTTCAAAATGTTTTCAAAAACTATATGT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
*
8212426 TATATATAT-TTTT-AAAATGTTTTCAAAAACTACATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * *
8212463 TATATATATGTTTTCAAAATGTTTTTAAAAAGTATATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* **
8212502 TATATATATATTTTCAAAATATTTTTGAAAACTATATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * **
8212541 TATATATATATTTCCAAAATATTTTTGAAAACTATATA-
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * * *
8212579 T-TATATATATTTTCAAAATATTTTCGAGAACTATGTAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * * *
8212617 TATATATATGTTTTGAAAAATATTTTTAAAAACTATATAT
1 TATATATATATTTT-CAAAATGTTTTCAAAAACTATATAT
*
8212657 TATATATATATTTTCAAAATGTTTTTAAAAACTATATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * * *
8212696 TAGACATATGTTTTCAAAATATTTTC-AAAACTATATAT
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
8212734 TATAT
1 TATAT
8212739 TTTATCGATA
Statistics
Matches: 375, Mismatches: 41, Indels: 27
0.85 0.09 0.06
Matches are distributed among these distances:
36 2 0.01
37 85 0.23
38 47 0.13
39 173 0.46
40 54 0.14
41 14 0.04
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (39 bp):
TATATATATATTTTCAAAATGTTTTCAAAAACTATATAT
Found at i:8212750 original size:32 final size:32
Alignment explanation
Indices: 8212714--8212775 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
8212704 TGTTTTCAAA
* *
8212714 ATATTTTCAAAACTATATATTATATTTTATCG
1 ATATTTCCAAAACTATATATTATATATTATCG
8212746 ATATTTCCAAAACTATATATTATATATTAT
1 ATATTTCCAAAACTATATATTATATATTAT
8212776 ATATACATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (32 bp):
ATATTTCCAAAACTATATATTATATATTATCG
Found at i:8212963 original size:36 final size:36
Alignment explanation
Indices: 8212911--8213001 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 36
8212901 GTCTCGCTTG
8212911 AAACAAAC-TTGATCTCACTTGAGATTGTTTTTCTCA
1 AAACAAACTTTG-TCTCACTTGAGATTGTTTTTCTCA
8212947 AAACAAACTTTGTCTCA--T----TTGTTTTTCTCA
1 AAACAAACTTTGTCTCACTTGAGATTGTTTTTCTCA
8212977 AAACAAACTTTGTCTCACTTGAGAT
1 AAACAAACTTTGTCTCACTTGAGAT
8213002 AGTCTTCCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
30 29 0.60
32 1 0.02
34 1 0.02
36 14 0.29
37 3 0.06
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.40
Consensus pattern (36 bp):
AAACAAACTTTGTCTCACTTGAGATTGTTTTTCTCA
Found at i:8213216 original size:29 final size:30
Alignment explanation
Indices: 8213160--8213241 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
8213150 TCGTCTCACT
* *
8213160 TGAGATAGTTTTTCTCCGAAACACAAAT-TC
1 TGAGATAGTTTCTCT-TGAAACACAAATCTC
* * * *
8213190 TGATATTGTTTCTCTTGAAACATAAATCTT
1 TGAGATAGTTTCTCTTGAAACACAAATCTC
8213220 TGAGATAGTTTCTCTTGAAACA
1 TGAGATAGTTTCTCTTGAAACA
8213242 AAGTTTTGTC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 10 0.23
30 33 0.77
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (30 bp):
TGAGATAGTTTCTCTTGAAACACAAATCTC
Found at i:8213233 original size:30 final size:31
Alignment explanation
Indices: 8213197--8213308 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 31
8213187 TTCTGATATT
8213197 GTTTCTCTTGAAACATAAATC-TTTGAGATA
1 GTTTCTCTTGAAACATAAATCATTTGAGATA
*
8213227 GTTTCTCTTGAAACA-AAGTTTTGTCATTTCTGAGATA
1 GTTTCTCTTGAAACATAA-----ATCA-TT-TGAGATA
*
8213264 GTTTCTCTTGAAACATAAA-CAATTGAGACT-
1 GTTTCTCTTGAAACATAAATCATTTGAGA-TA
8213294 GTTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
8213309 AATTTTGTCT
Statistics
Matches: 69, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
29 2 0.03
30 35 0.51
31 2 0.03
32 2 0.03
34 2 0.03
36 2 0.03
37 22 0.32
38 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (31 bp):
GTTTCTCTTGAAACATAAATCATTTGAGATA
Found at i:8213298 original size:67 final size:66
Alignment explanation
Indices: 8213187--8213317 Score: 194
Period size: 67 Copynumber: 2.0 Consensus size: 66
8213177 GAAACACAAA
* * *
8213187 TTCTGATATTGTTTCTCTTGAAACATAAATCTTTGAGATAGTTTCTCTTGAAACAAAGTTTTGTC
1 TTCTGAGATAGTTTCTCTTGAAACATAAATCATTGAGATAGTTTCTCTTGAAACAAA-TTTTGTC
8213252 AT
65 AT
8213254 TTCTGAGATAGTTTCTCTTGAAACATAAA-CAATTGAGACT-GTTTCTCTTGAAACAAATTTTGT
1 TTCTGAGATAGTTTCTCTTGAAACATAAATC-ATTGAGA-TAGTTTCTCTTGAAACAAATTTTGT
8213317 C
64 C
8213318 TCGCTTGAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
66 8 0.14
67 50 0.85
68 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.42
Consensus pattern (66 bp):
TTCTGAGATAGTTTCTCTTGAAACATAAATCATTGAGATAGTTTCTCTTGAAACAAATTTTGTCA
T
Found at i:8213335 original size:36 final size:36
Alignment explanation
Indices: 8213286--8213380 Score: 145
Period size: 36 Copynumber: 2.6 Consensus size: 36
8213276 ACATAAACAA
*
8213286 TTGAGACTGTTTCTCTTGAAACAAATTTTGTCTCGC
1 TTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCGC
* * * *
8213322 TTGAGACAATTTCTCTCGAAACAAGTTTTGTCTCTC
1 TTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCGC
8213358 TTGAGACAGTTTCTCTTGAAACA
1 TTGAGACAGTTTCTCTTGAAACA
8213381 TAAAAAATTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (36 bp):
TTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCGC
Found at i:8213392 original size:66 final size:66
Alignment explanation
Indices: 8213322--8213446 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 66
8213312 TTTGTCTCGC
* * *
8213322 TTGAGACAATTTCTCTCGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAAA
1 TTGAGACAATTTCCCTCGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAAAA
8213387 A
66 A
*** * *
8213388 TTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTTTCTTGAAACA
1 TTGAGACAATTTCCCTCGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACA
8213447 AAGTTTTGTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (66 bp):
TTGAGACAATTTCCCTCGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAAAA
A
Found at i:8213442 original size:36 final size:37
Alignment explanation
Indices: 8213402--8213483 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
8213392 GATTGTTTCC
*
8213402 CTTGAAACAAA-TTTTGTCTCGCTTGAGACAGTTTTT
1 CTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTAT
* *
8213438 CTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTAT
1 CTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTAT
8213475 CTTGAAACA
1 CTTGAAACA
8213484 TAAACAATTG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
36 11 0.26
37 31 0.74
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (37 bp):
CTTGAAACAAAGTTTTGTCTCGCTTGAGACAGTTTAT
Found at i:8213468 original size:205 final size:205
Alignment explanation
Indices: 8213219--8213653 Score: 667
Period size: 205 Copynumber: 2.1 Consensus size: 205
8213209 ACATAAATCT
* * *
8213219 TTGAGATAGTTTCTCTTGAAACAAAGTTTTGTCATTTCTGAGATAGTTTCTCTTGAAACATAAAC
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCATCTCTGAGATAGTTTATCTTGAAACATAAAC
* * *
8213284 AATTGAGACTGTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTCGAAACAAGTT
66 AATTGAGACTGTTTCCCTTGAAACAAATTTTGCCTCGCTTGAGACAATTTCTCTCGAAACAAATT
* *
8213349 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAAAATTGAGATTGTTTCCCTTGAAACAAAT
131 TTGTCTCTCTTGAGACAATTTCTCCTGAAACATAAAAAATTGAGATTGTTTCCCTTGAAACAAAT
8213414 TTTGTCTCGC
196 TTTGTCTCGC
*
8213424 TTGAGACAGTTTTTCTTGAAACAAAGTTTTGTC-TCTCTTGAGATAGTTTATCTTGAAACATAAA
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCATCTC-TGAGATAGTTTATCTTGAAACATAAA
* * * *
8213488 CAATTGAGATTGTTTCCCTTGAAACAAATTTTGCCTCGCTTGAGACATTTTTTCTTGAAACAAAT
65 CAATTGAGACTGTTTCCCTTGAAACAAATTTTGCCTCGCTTGAGACAATTTCTCTCGAAACAAAT
* *****
8213553 TTTGTCTCTCTTGAGACAATTTCTCCTGAAACATAAACAATTGAGATTGTTTCCCTTGAATTTTT
130 TTTGTCTCTCTTGAGACAATTTCTCCTGAAACATAAAAAATTGAGATTGTTTCCCTTGAAACAAA
8213618 TTTTGTCTCGC
195 TTTTGTCTCGC
8213629 TTGAGACCA-TTTCTCTTGAAACAAA
1 TTGAGA-CAGTTTCTCTTGAAACAAA
8213654 TTATCCCTAA
Statistics
Matches: 208, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
204 3 0.01
205 203 0.98
206 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (205 bp):
TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCATCTCTGAGATAGTTTATCTTGAAACATAAAC
AATTGAGACTGTTTCCCTTGAAACAAATTTTGCCTCGCTTGAGACAATTTCTCTCGAAACAAATT
TTGTCTCTCTTGAGACAATTTCTCCTGAAACATAAAAAATTGAGATTGTTTCCCTTGAAACAAAT
TTTGTCTCGC
Found at i:8213495 original size:103 final size:103
Alignment explanation
Indices: 8213219--8213653 Score: 635
Period size: 102 Copynumber: 4.2 Consensus size: 103
8213209 ACATAAATCT
* * *
8213219 TTGAGATAGTTTCTCTTGAAACAAAGTTTTGTCATTTC-TGAGATAGTTTCTCTTGAAACATAAA
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTC-TCTCTTGAGACAGTTTCTCTTGAAACATAAA
* *
8213283 CAATTGAGACTGTTTCTCTTGAAACAAATTTTGTCTCGC
65 CAATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
* * *
8213322 TTGAGACAATTTCTCTCGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAA
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAC
8213386 AATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
66 AATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
* * *
8213424 TTGAGACAGTTTTTCTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTATCTTGAAACATAAAC
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAC
*
8213489 AATTGAGATTGTTTCCCTTGAAACAAATTTTGCCTCGC
66 AATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
* * * *
8213527 TTGAGACATTTTTTCTTGAAACAAA-TTTTGTCTCTCTTGAGACAATTTCTCCTGAAACATAAAC
1 TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAC
*****
8213591 AATTGAGATTGTTTCCCTTGAATTTTTTTTTGTCTCGC
66 AATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
8213629 TTGAGACCA-TTTCTCTTGAAACAAA
1 TTGAGA-CAGTTTCTCTTGAAACAAA
8213654 TTATCCCTAA
Statistics
Matches: 302, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
101 3 0.01
102 178 0.59
103 121 0.40
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (103 bp):
TTGAGACAGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAC
AATTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCGC
Found at i:8213545 original size:36 final size:36
Alignment explanation
Indices: 8213500--8213585 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 36
8213490 ATTGAGATTG
* *
8213500 TTTCCCTTGAAACAAATTTTGCCTCGCTTGAGACAT
1 TTTCTCTTGAAACAAATTTTGCCTCGCTTGAGACAA
* * *
8213536 TTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAA
1 TTTCTCTTGAAACAAATTTTGCCTCGCTTGAGACAA
*
8213572 TTTCTCCTGAAACA
1 TTTCTCTTGAAACA
8213586 TAAACAATTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.40
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGCCTCGCTTGAGACAA
Found at i:8213566 original size:21 final size:21
Alignment explanation
Indices: 8213505--8213571 Score: 56
Period size: 21 Copynumber: 3.5 Consensus size: 21
8213495 GATTGTTTCC
* *
8213505 CTTGAAACAAATTTTGCCTCG
1 CTTGAAACAAATTTTGTCTCT
*
8213526 CTTGAGAC--A-TTT-T-T-T
1 CTTGAAACAAATTTTGTCTCT
8213541 CTTGAAACAAATTTTGTCTCT
1 CTTGAAACAAATTTTGTCTCT
*
8213562 CTTGAGACAA
1 CTTGAAACAA
8213572 TTTCTCCTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 12
0.67 0.10 0.23
Matches are distributed among these distances:
15 7 0.20
16 1 0.03
17 1 0.03
18 6 0.17
19 2 0.06
20 1 0.03
21 17 0.49
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.39
Consensus pattern (21 bp):
CTTGAAACAAATTTTGTCTCT
Found at i:8214009 original size:139 final size:138
Alignment explanation
Indices: 8213650--8214076 Score: 530
Period size: 139 Copynumber: 3.1 Consensus size: 138
8213640 TCTCTTGAAA
* *
8213650 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGAAACAATGCCATCCACCGACCAGA
1 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCATCCACCGACCAGA
* * *
8213715 TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACTAGATTTCCTCATCACGTAAGAACCG
66 TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACCAGACTTCCTCATCAC-TTAGAACCG
*
8213780 TGTTATCCC
130 TGTTATCTC
* * * * **
8213789 CAAATTATCCCTAAAGATGGCTAGACGTCCTCATCACGTAGGAACAATATCATCAACTGACTGGA
1 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCATCCACCGACCAGA
* *
8213854 TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACCAGACTTCCTCATCACATTTGAACCA
66 TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACCAGACTTCCTCATCAC-TTAGAACCG
8213919 TGTTATCTC
130 TGTTATCTC
* * * * * *
8213928 CAAACTATACCTAAAGACGACTAGACATCCTCATCACGTAGGAACAATGTCGTCCACCAACCAGA
1 CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCATCCACCGACCAGA
* ** * * * * * * * *
8213993 TCTCCTCAACGTGTAGGACCAGTGTGACCCTCAGACAATCAAACTTCCTTATCACTTAGGAACCG
66 TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACCAGACTTCCTCATCACTTA-GAACCG
*
8214058 TGTTGTCTC
130 TGTTATCTC
8214067 CAAAATTATC
1 C-AAATTATC
8214077 TCCAGATTGA
Statistics
Matches: 243, Mismatches: 43, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
138 2 0.01
139 235 0.97
140 6 0.02
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (138 bp):
CAAATTATCCCTAAAGACGGCTAGACGTCCTCATCACGTAGGAACAATGTCATCCACCGACCAGA
TCTCCTCATCACGTAGGAGCAGCGTCATCCTCAGATAACCAGACTTCCTCATCACTTAGAACCGT
GTTATCTC
Found at i:8214339 original size:3 final size:3
Alignment explanation
Indices: 8214333--8214388 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
8214323 ATTACTAATA
* * * * *
8214333 ATT ATT ATC ACT A-T ATT ATT ATT ATT ATT ATT ACT ATT AAT AGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
8214380 AAT ATT ATT
1 ATT ATT ATT
8214389 TTTTTTCATC
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (3 bp):
ATT
Found at i:8215626 original size:56 final size:56
Alignment explanation
Indices: 8215494--8215849 Score: 455
Period size: 56 Copynumber: 6.3 Consensus size: 56
8215484 ATTATTAGAA
* * * *
8215494 TGCACA-AGTAGTGCATATACGAC-ATTTCATCAACTCATGAATGAATTCCATGGAATT
1 TGCACACA-TAGTGCCTGTACGACTA-TTCATCAACTCATG-ATGAATTCCGTGGATTT
* * *
8215551 TGCACACGTAGTGCATGTACGACTATTCATCAACTCATGATGAATTCTGTGGATTT
1 TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
* ** *
8215607 TGCACACATAATGCCTGTACGGGTATTCATCAACTCATGATGAATTCTGTGGATTT
1 TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
* * * * **
8215663 TTCACACATAGTGCCTGTATGGCTATTTATCAACTCATGATGAATTATGTGGATTT
1 TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
* * * *
8215719 TGCACACATATTGCCTGTATGGCTATTCTTCAACTCATGATGAATTCCGTGGATTT
1 TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
* * *
8215775 TGCACACATAGTGTCTGTATGACTATTCATCATCTCATGATGAATTCCGTGGATTT
1 TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
8215831 TGCACACATAGTGCCTGTA
1 TGCACACATAGTGCCTGTA
8215850 GTACCCTTAG
Statistics
Matches: 269, Mismatches: 28, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
56 234 0.87
57 34 0.13
58 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (56 bp):
TGCACACATAGTGCCTGTACGACTATTCATCAACTCATGATGAATTCCGTGGATTT
Found at i:8216322 original size:20 final size:21
Alignment explanation
Indices: 8216271--8216322 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
8216261 GTTTCAAAAT
*
8216271 GGTATCGATAC-CTTCCCTTC
1 GGTATCGATACTCCTCCCTTC
*
8216291 AGTATCGATACTCCT-CCTTC
1 GGTATCGATACTCCTCCCTTC
8216311 GGTATCGATACT
1 GGTATCGATACT
8216323 GATTCAATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.19, C:0.31, G:0.15, T:0.35
Consensus pattern (21 bp):
GGTATCGATACTCCTCCCTTC
Found at i:8218161 original size:18 final size:21
Alignment explanation
Indices: 8218125--8218163 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
8218115 AAAATTTAAA
8218125 ATTAATAAATAAATGATTTTG
1 ATTAATAAATAAATGATTTTG
8218146 ATTAA-AAA-AAAT-ATTTTG
1 ATTAATAAATAAATGATTTTG
8218164 GGAGTCGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 3 0.17
21 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (21 bp):
ATTAATAAATAAATGATTTTG
Found at i:8218628 original size:37 final size:36
Alignment explanation
Indices: 8218575--8218651 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 36
8218565 TGTCTAAAAA
* *
8218575 ATATATTTATAATTTATAATATTAAAATATTTTATGT
1 ATATATATATAATTTATAATAGTAAAATA-TTTATGT
* *
8218612 ATATATATATACTTTATAATAGTAAAATATTTATTT
1 ATATATATATAATTTATAATAGTAAAATATTTATGT
8218648 ATAT
1 ATAT
8218652 TAGGAAATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 10 0.28
37 26 0.72
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (36 bp):
ATATATATATAATTTATAATAGTAAAATATTTATGT
Found at i:8218779 original size:25 final size:25
Alignment explanation
Indices: 8218744--8218818 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 25
8218734 ATATATATTA
*
8218744 ATAAAAATAAAATAATAGTAAACAT
1 ATAAAATTAAAATAATAGTAAACAT
8218769 ATAAAATTAAAAT-AT-GTTAAACA-
1 ATAAAATTAAAATAATAG-TAAACAT
*
8218792 AT--AATTAAAATAA-AATAAA-AT
1 ATAAAATTAAAATAATAGTAAACAT
8218813 ATAAAA
1 ATAAAA
8218819 AGTAATAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
20 1 0.02
21 15 0.36
22 1 0.02
23 5 0.12
24 8 0.19
25 12 0.29
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (25 bp):
ATAAAATTAAAATAATAGTAAACAT
Found at i:8220225 original size:3 final size:3
Alignment explanation
Indices: 8220217--8220276 Score: 66
Period size: 3 Copynumber: 19.3 Consensus size: 3
8220207 TATATTTATT
* *
8220217 TAA TAA TAAA TAA TAA TAA TAA TAA TAA TATA TTA TAT TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* *
8220264 TTA TAA TTA TAA T
1 TAA TAA TAA TAA T
8220277 TATGAAAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
3 42 0.89
4 5 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:8220245 original size:22 final size:22
Alignment explanation
Indices: 8220217--8220269 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
8220207 TATATTTATT
8220217 TAATAATAAATAATAATAATAA
1 TAATAATAAATAATAATAATAA
* * *
8220239 TAATAATATATTATATTAATAA
1 TAATAATAAATAATAATAATAA
*
8220261 TAATTATAA
1 TAATAATAA
8220270 TTATAATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATAATAAATAATAATAATAA
Found at i:8220258 original size:25 final size:27
Alignment explanation
Indices: 8220227--8220279 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
8220217 TAATAATAAA
*
8220227 TAATAATAATAATAATAATATATTATAT
1 TAATAATAATAATAATTATA-ATTATAT
*
8220255 TAATAATAATTATAATTATAATTAT
1 TAATAATAATAATAATTATAATTAT
8220280 GAAAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
TAATAATAATAATAATTATAATTATAT
Found at i:8220278 original size:22 final size:21
Alignment explanation
Indices: 8220200--8220278 Score: 80
Period size: 19 Copynumber: 4.0 Consensus size: 21
8220190 ATGTAATTTG
*
8220200 TAAT-ATATATATT-TATTTAA
1 TAATAATATA-ATTATAATTAA
*
8220220 TAATAA-ATAATAATAA-TAA
1 TAATAATATAATTATAATTAA
8220239 TAATAATAT-ATTAT-ATTAA
1 TAATAATATAATTATAATTAA
8220258 TAATAATTATAATTATAATTA
1 TAATAA-TATAATTATAATTA
8220279 TGAAAAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
18 1 0.02
19 24 0.49
20 14 0.29
21 6 0.12
22 4 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATAATATAATTATAATTAA
Found at i:8220510 original size:45 final size:46
Alignment explanation
Indices: 8220398--8221181 Score: 1168
Period size: 45 Copynumber: 16.8 Consensus size: 46
8220388 GATGGAAATG
*
8220398 TTTGAAAACATCATACACTGAAGGGCTTACAGATGACCCGAAGGTTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG---TT
8220447 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
8220492 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
*
8220537 TTTGAAAACATCATGCACTGAAGGGCTTAAAGATGACCCGAAGGTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--TT
8220585 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
*
8220630 TTTGAAAACATCATGCACTGAAGGGCTTACAAATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
8220676 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--TT
* * *
8220724 TTTGATAACATCATGCACTGAACGGCTTACAGATGACCCAAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
8220769 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-----TT
8220820 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TT
* *
8220867 TTTGATAACATTATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
8220912 TTTGAAAACATAATGCACTGAAGGGCTTACAAATGACCCGAAGGTTTTTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG------TT
*
8220964 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
8221009 TTTGAAAACATCATGCACTGAAGGGCTTAAAGATGACCCGGAGGTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
*
8221055 TTTGATAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
* *
8221100 TTTGAAAACATCATGCATTAAAGGGCTTACAGATGACCCGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TT
* * *
8221147 TTTGATAACATTATGCACTGAAGGACTTACAGATG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATG
8221182 TTGGAAATAG
Statistics
Matches: 680, Mismatches: 33, Indels: 46
0.90 0.04 0.06
Matches are distributed among these distances:
45 301 0.44
46 86 0.13
47 76 0.11
48 87 0.13
49 43 0.06
51 45 0.07
52 42 0.06
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (46 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTT
Found at i:8220631 original size:93 final size:91
Alignment explanation
Indices: 8220398--8221181 Score: 1144
Period size: 93 Copynumber: 8.4 Consensus size: 91
8220388 GATGGAAATG
*
8220398 TTTGAAAACATCATACACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTTTGAAAACATCATGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG----TTTTGAAAACATCATGC
*
8220463 ACTGAAGGGCTTACAGATGACCCGAAGG-T
62 ACTGAAGGGCTTAAAGATGACCCGAAGGTT
8220492 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
8220557 AAGGGCTTAAAGATGACCCGAAGGTTTT
66 AAGGGCTTAAAGATGACCCGAAGG--TT
8220585 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
8220650 AAGGGCTTACAA-ATGACCCGAAGGTT
66 AAGGGCTTA-AAGATGACCCGAAGGTT
*
8220676 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTTGATAACATCATGCA
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG---TTTTGAAAACATCATGCA
* * *
8220741 CTGAACGGCTTACAGATGACCCAAAGG-T
63 CTGAAGGGCTTAAAGATGACCCGAAGGTT
8220769 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTTTTTGAAAACATCAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG------TTTTGAAAACATCAT
*
8220834 GCACTGAAGGGCTTACAGATGACCCGAAGGTTT
60 GCACTGAAGGGCTTAAAGATGACCCGAAGG-TT
* * *
8220867 TTTGATAACATTATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATAATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
8220932 AAGGGCTTACAA-ATGACCCGAAGGTTTTTTTT
66 AAGGGCTTA-AAGATGACCCGAAGG------TT
*
8220964 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGGTTTTGAAAACATCATGCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
*
8221029 AAGGGCTTAAAGATGACCCGGAGGTT
66 AAGGGCTTAAAGATGACCCGAAGGTT
* * *
8221055 TTTGATAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCATTA
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
*
8221120 AAGGGCTTACAGATGACCCGAAGGTTT
66 AAGGGCTTAAAGATGACCCGAAGG-TT
* * *
8221147 TTTGATAACATTATGCACTGAAGGACTTACAGATG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATG
8221182 TTGGAAATAG
Statistics
Matches: 643, Mismatches: 26, Indels: 44
0.90 0.04 0.06
Matches are distributed among these distances:
90 44 0.07
91 131 0.20
92 76 0.12
93 134 0.21
94 84 0.13
96 47 0.07
97 84 0.13
98 43 0.07
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (91 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
AAGGGCTTAAAGATGACCCGAAGGTT
Found at i:8220683 original size:139 final size:138
Alignment explanation
Indices: 8220398--8221181 Score: 1225
Period size: 139 Copynumber: 5.6 Consensus size: 138
8220388 GATGGAAATG
*
8220398 TTTGAAAACATCATACACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTTTGAAAACATCATGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--TTTTTTGAAAACATCATGC
8220463 ACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
64 ACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
8220528 CCCGAAGG-T
129 CCCGAAGGTT
*
8220537 TTTGAAAACATCATGCACTGAAGGGCTTAAAGATGACCCGAAGGTTTTTTTGAAAACATCATGCA
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTTTGAAAACATCATGCA
*
8220602 CTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAAATGAC
65 CTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGAC
8220667 CCGAAGGTT
130 CCGAAGGTT
*
8220676 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTTGATAACATCATGCA
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG-TTTTTTGAAAACATCATGCA
* *
8220741 CTGAACGGCTTACAGATGACCCAAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGAC
65 CTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGAC
8220806 CCGAAGGTTTTTTT
130 CCGAAGG-----TT
* *
8220820 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTGATAACATTATGCAC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTGAAAACATCATGCAC
* *
8220885 TGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATAATGCACTGAAGGGCTTACAAATGACC
66 TGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACC
8220950 CGAAGGTTTTTTTT
131 CGAAGG------TT
*
8220964 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGG--TTTTGAAAACATCATGCAC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTGAAAACATCATGCAC
* * *
8221027 TGAAGGGCTTAAAGATGACCCGGAGGTTTTTGATAACATCATGCACTGAAGGGCTTACAGATGAC
66 TGAAGGGCTTACAGATGACCCGAAGG-TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGAC
8221092 CCGAAGG-T
130 CCGAAGGTT
* * * *
8221100 TTTGAAAACATCATGCATTAAAGGGCTTACAGATGACCCGAAGGTTTTTTGATAACATTATGCAC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTGAAAACATCATGCAC
*
8221165 TGAAGGACTTACAGATG
66 TGAAGGGCTTACAGATG
8221182 TTGGAAATAG
Statistics
Matches: 607, Mismatches: 28, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
136 42 0.07
138 124 0.20
139 175 0.29
142 41 0.07
143 129 0.21
144 96 0.16
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (138 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTTGAAAACATCATGCAC
TGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACC
CGAAGGTT
Found at i:8225247 original size:23 final size:23
Alignment explanation
Indices: 8225213--8225281 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
8225203 CACCACAACT
* *
8225213 CGTATAAATGCACTGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
8225236 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
8225259 CGTAGAAATGCACCGAAGAGCCA
1 CGTAGAAATGCACCGAAGTGCCA
8225282 TATAATAATG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:8226739 original size:21 final size:21
Alignment explanation
Indices: 8226697--8226741 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8226687 TTTTGTTTGT
* * *
8226697 TTGAAGGGGTATCGGTTTCCC
1 TTGAAGGGGTACCGATTCCCC
*
8226718 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
8226739 TTG
1 TTG
8226742 CCCAGAAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:8227677 original size:16 final size:16
Alignment explanation
Indices: 8227638--8227696 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
8227628 ATCATTAGTT
* *
8227638 CTTATCACTCAAAATC
1 CTTATCAATCAAATTC
*
8227654 ATTAATCAATCAAATTC
1 CTT-ATCAATCAAATTC
8227671 CTTATCAATCAAATTC
1 CTTATCAATCAAATTC
8227687 CTTATCAATC
1 CTTATCAATC
8227697 TTTAATTACC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
16 25 0.66
17 13 0.34
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (16 bp):
CTTATCAATCAAATTC
Found at i:8230354 original size:23 final size:23
Alignment explanation
Indices: 8230328--8230395 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
8230318 CACCACAGCT
* *
8230328 CGTATAAATACACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
8230351 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
8230374 CGTAGAAATGCACTGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
8230396 TCACAAGACT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:8234401 original size:15 final size:14
Alignment explanation
Indices: 8234380--8234413 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8234370 CATGATTTAA
8234380 TTTTTTTT-CTTTT
1 TTTTTTTTCCTTTT
8234393 TTCTTTTTTCCTTTT
1 TT-TTTTTTCCTTTT
8234408 TTTTTT
1 TTTTTT
8234414 CATTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 10 0.53
15 7 0.37
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTTCCTTTT
Found at i:8234419 original size:20 final size:20
Alignment explanation
Indices: 8234384--8234421 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8234374 ATTTAATTTT
8234384 TTTTCTTTTTTCTTTTTTCC
1 TTTTCTTTTTTCTTTTTTCC
8234404 TTTT-TTTTTTCATTTTTT
1 TTTTCTTTTTTC-TTTTTT
8234422 TGAGTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTCTTTTTTCTTTTTTCC
Found at i:8234422 original size:15 final size:14
Alignment explanation
Indices: 8234380--8234413 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
8234370 CATGATTTAA
8234380 TTTTTTTTCTTTTT
1 TTTTTTTTCTTTTT
*
8234394 TCTTTTTTCCTTTTT
1 T-TTTTTTTCTTTTT
8234409 TTTTT
1 TTTTT
8234414 CATTTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTTCTTTTT
Found at i:8238917 original size:46 final size:49
Alignment explanation
Indices: 8238850--8238940 Score: 143
Period size: 46 Copynumber: 1.9 Consensus size: 49
8238840 AGGTATAAAT
* *
8238850 CCTAACCTCATGCTTTCTAGTTC-CATGC-TTTGTTT-GGAAAAATTAA
1 CCTAACCGCATGATTTCTAGTTCGCATGCATTTGTTTAGGAAAAATTAA
8238896 CCTAACCGCATGATTTCTAGTTCGCATGCATTTGTTTAGGAAAAA
1 CCTAACCGCATGATTTCTAGTTCGCATGCATTTGTTTAGGAAAAA
8238941 GAAAATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
46 21 0.52
47 5 0.12
48 7 0.17
49 7 0.17
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (49 bp):
CCTAACCGCATGATTTCTAGTTCGCATGCATTTGTTTAGGAAAAATTAA
Found at i:8239873 original size:37 final size:36
Alignment explanation
Indices: 8239832--8239908 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 36
8239822 TTGTCTAAAA
* *
8239832 ATATATTTATAATTTATAATATTAAAATATTTTATGT
1 ATATATATATAATTTATAATAGTAAAATA-TTTATGT
* *
8239869 ATATATATATACTTTATAATAGTAAAATATTTATTT
1 ATATATATATAATTTATAATAGTAAAATATTTATGT
8239905 ATAT
1 ATAT
8239909 TAGGAAATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 10 0.28
37 26 0.72
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (36 bp):
ATATATATATAATTTATAATAGTAAAATATTTATGT
Found at i:8241514 original size:3 final size:3
Alignment explanation
Indices: 8241506--8241560 Score: 56
Period size: 3 Copynumber: 17.3 Consensus size: 3
8241496 TAGATTTATT
* *
8241506 TAA TAA TAAA TAAA TAA TAA TAA TAA TAA TATA TTA TAT TAA TAA TAA
1 TAA TAA T-AA T-AA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
*
8241554 TTA TAA T
1 TAA TAA T
8241561 TATGAAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 35 0.80
4 9 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:8241548 original size:16 final size:15
Alignment explanation
Indices: 8241518--8241558 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
8241508 ATAATAAATA
* *
8241518 AATAATAATAATAAT
1 AATAATTATATTAAT
8241533 AATATATTATATTAAT
1 AATA-ATTATATTAAT
8241549 AATAATTATA
1 AATAATTATA
8241559 ATTATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATAATTATATTAAT
Found at i:8241548 original size:19 final size:19
Alignment explanation
Indices: 8241501--8241554 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8241491 ATATATAGAT
8241501 TTAT-TTAATAATAAATAAA
1 TTATATTAATAAT-AATAAA
* * *
8241520 TAATAATAATAATAATATA
1 TTATATTAATAATAATAAA
8241539 TTATATTAATAATAAT
1 TTATATTAATAATAAT
8241555 TATAATTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 22 0.76
20 7 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATATTAATAATAATAAA
Found at i:8242859 original size:114 final size:114
Alignment explanation
Indices: 8242659--8242888 Score: 460
Period size: 114 Copynumber: 2.0 Consensus size: 114
8242649 CTGTTGGTGC
8242659 AGGCAATGAAGAGATTAAAGGAGAGTTTGTAATTGCCATGGACCCCAAGCTAAGGAGAAGTGCAG
1 AGGCAATGAAGAGATTAAAGGAGAGTTTGTAATTGCCATGGACCCCAAGCTAAGGAGAAGTGCAG
8242724 CATCAAATATGGTTGTTGAGGAAGTCCCGAGACTGGCTCACCAATGCTT
66 CATCAAATATGGTTGTTGAGGAAGTCCCGAGACTGGCTCACCAATGCTT
8242773 AGGCAATGAAGAGATTAAAGGAGAGTTTGTAATTGCCATGGACCCCAAGCTAAGGAGAAGTGCAG
1 AGGCAATGAAGAGATTAAAGGAGAGTTTGTAATTGCCATGGACCCCAAGCTAAGGAGAAGTGCAG
8242838 CATCAAATATGGTTGTTGAGGAAGTCCCGAGACTGGCTCACCAATGCTT
66 CATCAAATATGGTTGTTGAGGAAGTCCCGAGACTGGCTCACCAATGCTT
8242887 AG
1 AG
8242889 AACAATCAGA
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 116 1.00
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (114 bp):
AGGCAATGAAGAGATTAAAGGAGAGTTTGTAATTGCCATGGACCCCAAGCTAAGGAGAAGTGCAG
CATCAAATATGGTTGTTGAGGAAGTCCCGAGACTGGCTCACCAATGCTT
Done.