Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 49
Found at i:8247634 original size:22 final size:20
Alignment explanation
Indices: 8247603--8247657 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 20
8247593 ATACAAGAAG
*
8247603 GGGGTATCGATACCCTAATA
1 GGGGTATCGATACCATAATA
*
8247623 GGGTAGTATCGATACCATAGTA
1 GGG--GTATCGATACCATAATA
8247645 GGGGTATCGATAC
1 GGGGTATCGATAC
8247658 TCAGGGGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.42
22 18 0.58
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
GGGGTATCGATACCATAATA
Found at i:8248202 original size:45 final size:45
Alignment explanation
Indices: 8248107--8248527 Score: 504
Period size: 45 Copynumber: 9.4 Consensus size: 45
8248097 ATGATGCCCA
* * ** **
8248107 AGTTGAAATGTATATGGGTACATTATCAACA-AAAAGCATATTTT
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* *
8248151 AGTTGAAATGTAAATGGGTACATTATCAACAGAAAAGTATGCTAG
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* * *
8248196 AGTTGAAATGCATATAGGTGCATTATCAACAGAAAAGTATGCTGG
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* * * * * *
8248241 AGTTGAAATGCATATGAGTGCATTATCAATA-TAAAGACATGCTAA
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAG-TATGCTAG
* * * * ** **
8248286 AGTTGAAATGTATATGGCTACATTATCAATAGAAAAGCATATTTT
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* *
8248331 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATGCTAT
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
*
8248376 AGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCTAG
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* * *
8248421 AGTTGAAATGCATATGTGTGCATTATCAACAGAAAAGTATGCTTG
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
* * *
8248466 AGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTATACTAT
1 AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
*
8248511 AGTTGAAATGCATATGG
1 AGTTGAAATGTATATGG
8248528 CAGTATTATA
Statistics
Matches: 328, Mismatches: 46, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
44 34 0.10
45 290 0.88
46 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (45 bp):
AGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAG
Found at i:8248355 original size:135 final size:134
Alignment explanation
Indices: 8248107--8248527 Score: 558
Period size: 135 Copynumber: 3.1 Consensus size: 134
8248097 ATGATGCCCA
* * ** ** *
8248107 AGTTGAAATGTATATGGGTACATTATCAACAAAAAG-CATATTTTAGTTGAAATGTAAATGGGTA
1 AGTTGAAATGCATATGGGTGCATTATCAACAAAAAGACATGCTAAAGTTGAAATGTATAT-GGTA
* *
8248171 CATTATCAACAGAAAAGTATGCTAGAGTTGAAATGCATATAGGTGCATTATCAACAGAAAAGTAT
65 CATTATCAACAGAAAAGTATGCTTGAGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTAT
**
8248236 GCTGG
130 GCTAT
* * *
8248241 AGTTGAAATGCATATGAGTGCATTATCAATATAAAGACATGCTAAAGTTGAAATGTATATGGCTA
1 AGTTGAAATGCATATGGGTGCATTATCAACAAAAAGACATGCTAAAGTTGAAATGTATATGG-TA
* * ** * * *
8248306 CATTATCAATAGAAAAGCATATTTTAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTAT
65 CATTATCAACAGAAAAGTATGCTTGAGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTAT
8248371 GCTAT
130 GCTAT
* * *
8248376 AGTTGAAATGCATATGGGTGCATTATCAACAGAAAAG-TATGCTAGAGTTGAAATGCATATGTGT
1 AGTTGAAATGCATATGGGTGCATTATCAACA-AAAAGACATGCTAAAGTTGAAATGTATATG-GT
*
8248440 GCATTATCAACAGAAAAGTATGCTTGAGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTA
64 ACATTATCAACAGAAAAGTATGCTTGAGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTA
*
8248505 TACTAT
129 TGCTAT
8248511 AGTTGAAATGCATATGG
1 AGTTGAAATGCATATGG
8248528 CAGTATTATA
Statistics
Matches: 247, Mismatches: 36, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
134 33 0.13
135 209 0.85
136 5 0.02
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (134 bp):
AGTTGAAATGCATATGGGTGCATTATCAACAAAAAGACATGCTAAAGTTGAAATGTATATGGTAC
ATTATCAACAGAAAAGTATGCTTGAGTTGAAATGTATATAGGTGCATTATCAACAGAAAAGTATG
CTAT
Found at i:8253820 original size:3 final size:3
Alignment explanation
Indices: 8253814--8253855 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8253804 AAATTTCTCT
8253814 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8253856 ATTCCCCCGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8254540 original size:22 final size:22
Alignment explanation
Indices: 8254512--8254589 Score: 108
Period size: 22 Copynumber: 3.6 Consensus size: 22
8254502 CCCAAGGAAG
8254512 GGTATCGATACCATATCATAGT
1 GGTATCGATACCATATCATAGT
8254534 GGTATCGATACCATATCATAGT
1 GGTATCGATACCATATCATAGT
* *
8254556 AGTATCGATACCATGGT-A-AG-
1 GGTATCGATACCAT-ATCATAGT
8254576 GGTATCGATACCAT
1 GGTATCGATACCAT
8254590 GTTACATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
20 13 0.25
21 2 0.04
22 36 0.69
23 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (22 bp):
GGTATCGATACCATATCATAGT
Found at i:8255185 original size:45 final size:45
Alignment explanation
Indices: 8255136--8255527 Score: 374
Period size: 45 Copynumber: 8.7 Consensus size: 45
8255126 GCCCTATTTA
* **
8255136 AAATGTATATGAGTACATTATCAACAGAAAA-TCATATTTTAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGT-ATATTAGAGTTG
****
8255181 AAATGTATATGGGTACATTATCAACAGAAAAGTGCGCTAGAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
* ** *
8255226 AAATGCATATGGGTGTATTATCAACAGAAAAGTATGTT-GAAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAG-AGTTG
** * * * * *** * *
8255271 AAATACATATGGGTGCATTATCAAAAGAAGAGCAGGCTAAAGCTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
* * * * **
8255316 AAATGTATATGGATACATTATCAATAGAAATGCATATTTTAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
**
8255361 AAATGTATATGGGTACATTATCAACAGAAAAGTATGCTAGAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
* **
8255406 AAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAGAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
** * *
8255451 AAATGTATATGGGTGTATTATCAACAAAAAAGTATATTATAGTTG
1 AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
* * ** *
8255496 AAATGCATACGGGTGTATTATCAATAGAAAAG
1 AAATGTATATGGGTACATTATCAACAGAAAAG
8255528 AGGTTATACC
Statistics
Matches: 291, Mismatches: 53, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
44 1 0.00
45 289 0.99
46 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (45 bp):
AAATGTATATGGGTACATTATCAACAGAAAAGTATATTAGAGTTG
Found at i:8255402 original size:180 final size:180
Alignment explanation
Indices: 8255136--8255474 Score: 549
Period size: 180 Copynumber: 1.9 Consensus size: 180
8255126 GCCCTATTTA
8255136 AAATGTATATGAGTACATTATCAACAGAAAATCATATTTTAGTTGAAATGTATATGGGTACATTA
1 AAATGTATATGAGTACATTATCAACAGAAAATCATATTTTAGTTGAAATGTATATGGGTACATTA
* * *
8255201 TCAACAGAAAAGTGCGCTAGAGTTGAAATGCATATGGGTGTATTATCAACAGAAAAGTATG-TTG
66 TCAACAGAAAAGTACGCTAGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCTAG
8255265 AAGTTGAAATACATATGGGTGCATTATCAAAAGAAGAGCAGGCTAAAGCTG
131 -AGTTGAAATACATATGGGTGCATTATCAAAAGAAGAGCAGGCTAAAGCTG
*
8255316 AAATGTATATG-GATACATTATCAATAG-AAATGCATATTTTAGTTGAAATGTATATGGGTACAT
1 AAATGTATATGAG-TACATTATCAACAGAAAAT-CATATTTTAGTTGAAATGTATATGGGTACAT
* *
8255379 TATCAACAGAAAAGTATGCTAGAGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATGCT
64 TATCAACAGAAAAGTACGCTAGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
** *
8255444 AGAGTTGAAATGTATATGGGTGTATTATCAA
129 AGAGTTGAAATACATATGGGTGCATTATCAA
8255475 CAAAAAAGTA
Statistics
Matches: 147, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
179 5 0.03
180 140 0.95
181 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (180 bp):
AAATGTATATGAGTACATTATCAACAGAAAATCATATTTTAGTTGAAATGTATATGGGTACATTA
TCAACAGAAAAGTACGCTAGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCTAG
AGTTGAAATACATATGGGTGCATTATCAAAAGAAGAGCAGGCTAAAGCTG
Found at i:8255484 original size:90 final size:90
Alignment explanation
Indices: 8255136--8255527 Score: 412
Period size: 90 Copynumber: 4.4 Consensus size: 90
8255126 GCCCTATTTA
* * *
8255136 AAATGTATATGAGTACATTATCAACAGAAAA-TCATATTTTAGTTGAAATGTATATGGGTACATT
1 AAATGTATATGGGTGCATTATCAACAGAAAAGT-ATATTTGAGTTGAAATGTATATGGGTACATT
* **
8255200 ATCAACAGAAAAGTGCGCTAGAGTTG
65 ATCAACAAAAAAGTATGCTAGAGTTG
* * * ** *
8255226 AAATGCATATGGGTGTATTATCAACAGAAAAGTAT-GTTGAAGTTGAAATACATATGGGTGCATT
1 AAATGTATATGGGTGCATTATCAACAGAAAAGTATATTTG-AGTTGAAATGTATATGGGTACATT
* * * * *
8255290 ATCAA-AAGAAGAGCAGGCTAAAGCTG
65 ATCAACAA-AAAAGTATGCTAGAGTTG
* * * * * *
8255316 AAATGTATATGGATACATTATCAATAGAAATGCATATTTTAGTTGAAATGTATATGGGTACATTA
1 AAATGTATATGGGTGCATTATCAACAGAAAAGTATATTTGAGTTGAAATGTATATGGGTACATTA
*
8255381 TCAACAGAAAAGTATGCTAGAGTTG
66 TCAACAAAAAAGTATGCTAGAGTTG
** * **
8255406 AAATGTATATGGGTGCATTATCAACAGAAAAGTATGCTAGAGTTGAAATGTATATGGGTGTATTA
1 AAATGTATATGGGTGCATTATCAACAGAAAAGTATATTTGAGTTGAAATGTATATGGGTACATTA
** *
8255471 TCAACAAAAAAGTATATTATAGTTG
66 TCAACAAAAAAGTATGCTAGAGTTG
* * * *
8255496 AAATGCATACGGGTGTATTATCAATAGAAAAG
1 AAATGTATATGGGTGCATTATCAACAGAAAAG
8255528 AGGTTATACC
Statistics
Matches: 244, Mismatches: 53, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
89 3 0.01
90 237 0.97
91 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (90 bp):
AAATGTATATGGGTGCATTATCAACAGAAAAGTATATTTGAGTTGAAATGTATATGGGTACATTA
TCAACAAAAAAGTATGCTAGAGTTG
Found at i:8255556 original size:90 final size:90
Alignment explanation
Indices: 8255178--8255566 Score: 252
Period size: 90 Copynumber: 4.3 Consensus size: 90
8255168 CATATTTTAG
* ** * *** * *
8255178 TTGAAATGTATATGGGTACATTATCAACAGAAAAGTGCGCTAGAGTTGAAATGCATATGGGTGTA
1 TTGAAATGCATATGGGTGTATTATCAACAAAAAAGTATACTAGAGTTGAAATGCATACGGGTGCA
* * *
8255243 TTATCAACAGAAAAGTATG-TTGAAG
66 TTATCAACAGAAAAGTAGGCTAG-AC
* * * * ** * * * * * *
8255268 TTGAAATACATATGGGTGCATTATCAA-AAGAAGAGCAGGCTAAAGCTGAAATGTATATGGATAC
1 TTGAAATGCATATGGGTGTATTATCAACAA-AAAAGTATACTAGAGTTGAAATGCATACGGGTGC
* * ***
8255332 ATTATCAATAGAAATGCATATTTTAG--
65 ATTATCAACAGAAAAG--TAGGCTAGAC
* ** * * * *
8255358 TTGAAATGTATATGGGTACATTATCAACAGAAAAGTATGCTAGAGTTGAAATGTATATGGGTGCA
1 TTGAAATGCATATGGGTGTATTATCAACAAAAAAGTATACTAGAGTTGAAATGCATACGGGTGCA
* *
8255423 TTATCAACAGAAAAGTATGCTAGAG
66 TTATCAACAGAAAAGTAGGCTAGAC
* * * *
8255448 TTGAAATGTATATGGGTGTATTATCAACAAAAAAGTATATTATAGTTGAAATGCATACGGGTGTA
1 TTGAAATGCATATGGGTGTATTATCAACAAAAAAGTATACTAGAGTTGAAATGCATACGGGTGCA
* * *
8255513 TTATCAATAGAAAAG-AGGTTATACC
66 TTATCAACAGAAAAGTAGGCTAGA-C
*
8255538 TT-AAAGTGCATAAT-GGTGTATTATAAACA
1 TTGAAA-TGCAT-ATGGGTGTATTATCAACA
8255567 TAAATGAAGG
Statistics
Matches: 240, Mismatches: 49, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
88 6 0.03
89 9 0.04
90 217 0.90
91 3 0.01
92 3 0.01
93 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (90 bp):
TTGAAATGCATATGGGTGTATTATCAACAAAAAAGTATACTAGAGTTGAAATGCATACGGGTGCA
TTATCAACAGAAAAGTAGGCTAGAC
Found at i:8255561 original size:135 final size:134
Alignment explanation
Indices: 8255176--8255527 Score: 443
Period size: 135 Copynumber: 2.6 Consensus size: 134
8255166 ATCATATTTT
**** *
8255176 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTGCGCTAGAGTTGAAATGCATATGGGTG
1 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATATTATAGTTGAAATGCATATGGGTG
* * *
8255241 TATTATCAACAGAAAAGTATGTTGAAGTTGAAATACATATGGGTGCATTATCAAAAGAAGAGCAG
66 TATTATCAACAGAAAAGTATGTT-AAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGCAG
8255306 GCTAA
130 GCTAA
* * * * * * * *
8255311 AGCTGAAATGTATATGGATACATTATCAATAGAAATGCATATTTTAGTTGAAATGTATATGGGTA
1 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATATTATAGTTGAAATGCATATGGGTG
* * * * *
8255376 CATTATCAACAGAAAAGTATGCTAGAGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTAT
66 TATTATCAACAGAAAAGTATGTTA-AGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGCAG
*
8255441 GCTAG
130 GCTAA
** * *
8255446 AGTTGAAATGTATATGGGTGTATTATCAACAAAAAAGTATATTATAGTTGAAATGCATACGGGTG
1 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATATTATAGTTGAAATGCATATGGGTG
*
8255511 TATTATCAATAGAAAAG
66 TATTATCAACAGAAAAG
8255528 AGGTTATACC
Statistics
Matches: 180, Mismatches: 36, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
134 1 0.01
135 179 0.99
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (134 bp):
AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATATTATAGTTGAAATGCATATGGGTG
TATTATCAACAGAAAAGTATGTTAAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGCAGG
CTAA
Found at i:8259781 original size:77 final size:78
Alignment explanation
Indices: 8259684--8259831 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 78
8259674 ATATAGTAAG
* * *
8259684 TAAACATTAAAAGAATGTAATT-TTGATTACAACTTTTTAATTG-ATATTTAATTTAGAA-TGAT
1 TAAACATTAAAAGAATGTAATTCAT-ATTACAACTCTTTAA-TGCATATTTAATTT-GAATTAAT
8259746 TAAATAAGATTTTAAA
63 TAAATAAGATTTTAAA
* * *
8259762 TAAACATT-AAAGATTGTAATTCATATTATAAGTCTTTAATGCATATTTAATTTGAATTAATTAA
1 TAAACATTAAAAGAATGTAATTCATATTACAACTCTTTAATGCATATTTAATTTGAATTAATTAA
8259826 ATAAGA
66 ATAAGA
8259832 AAATTATTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
76 5 0.08
77 47 0.77
78 9 0.15
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.42
Consensus pattern (78 bp):
TAAACATTAAAAGAATGTAATTCATATTACAACTCTTTAATGCATATTTAATTTGAATTAATTAA
ATAAGATTTTAAA
Found at i:8267346 original size:2 final size:2
Alignment explanation
Indices: 8267341--8267384 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8267331 CGAAAAAAAC
8267341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8267383 AT
1 AT
8267385 GGGTATAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8281628 original size:28 final size:27
Alignment explanation
Indices: 8281597--8281656 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
8281587 TTGAGTTACA
8281597 TTTATTGTTTTTGAAG-AATTTATGATAT
1 TTTATTG-TTTTGAAGTAA-TTATGATAT
*
8281625 TTTAATGTTTTGAAGTAATTATGATAT
1 TTTATTGTTTTGAAGTAATTATGATAT
8281652 TTTAT
1 TTTAT
8281657 GCTTTATGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 21 0.72
28 8 0.28
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (27 bp):
TTTATTGTTTTGAAGTAATTATGATAT
Found at i:8283487 original size:16 final size:16
Alignment explanation
Indices: 8283466--8283497 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8283456 TATTTGATCT
*
8283466 ATTAAAGATAAAGGAA
1 ATTAAAGAAAAAGGAA
8283482 ATTAAAGAAAAAGGAA
1 ATTAAAGAAAAAGGAA
8283498 GGATATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.16
Consensus pattern (16 bp):
ATTAAAGAAAAAGGAA
Found at i:8287413 original size:2 final size:2
Alignment explanation
Indices: 8287406--8287436 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8287396 TGATGTAAGC
8287406 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8287437 GCATTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:8288271 original size:21 final size:21
Alignment explanation
Indices: 8288242--8288283 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8288232 ACTTGACAAG
*
8288242 CGTCATTTTACTTTTAAATAA
1 CGTCATTTTACTTTCAAATAA
*
8288263 CGTCGTTTTACTTTCAAATAA
1 CGTCATTTTACTTTCAAATAA
8288284 ATTATTCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (21 bp):
CGTCATTTTACTTTCAAATAA
Found at i:8288940 original size:35 final size:35
Alignment explanation
Indices: 8288889--8288987 Score: 180
Period size: 35 Copynumber: 2.8 Consensus size: 35
8288879 CATAGTGGAG
* *
8288889 GATAATAAAAATATTCCTGGAGACTTGATGCTTAT
1 GATAATAAAAACATTCCTGGAGGCTTGATGCTTAT
8288924 GATAATAAAAACATTCCTGGAGGCTTGATGCTTAT
1 GATAATAAAAACATTCCTGGAGGCTTGATGCTTAT
8288959 GATAATAAAAACATTCCTGGAGGCTTGAT
1 GATAATAAAAACATTCCTGGAGGCTTGAT
8288988 TCTTCTGTGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (35 bp):
GATAATAAAAACATTCCTGGAGGCTTGATGCTTAT
Found at i:8290326 original size:21 final size:21
Alignment explanation
Indices: 8290268--8290326 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
8290258 CTTAAATCTT
* * *
8290268 AAACCGTATACCCTAAACCCC
1 AAACCTTAAACCCTAAACCAC
* * * *
8290289 AAGCCTAAAATCATAAACCAC
1 AAACCTTAAACCCTAAACCAC
8290310 AAACCTTAAACCCTAAA
1 AAACCTTAAACCCTAAA
8290327 TATTAAGTTT
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.15
Consensus pattern (21 bp):
AAACCTTAAACCCTAAACCAC
Found at i:8290957 original size:2 final size:2
Alignment explanation
Indices: 8290950--8290997 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
8290940 TTAAACCATT
8290950 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8290990 TA TA TA TA
1 TA TA TA TA
8290998 ATTGGAATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8293088 original size:29 final size:32
Alignment explanation
Indices: 8293038--8293099 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 32
8293028 AGAATTAGAC
*
8293038 TTTATAATAATTTATAAGTTAGTCTTTA-AAT
1 TTTATAATAATTTATAAGTTAGTATTTACAAT
**
8293069 TTTA-AATAA-TTATATTTTAGTATTTACAAT
1 TTTATAATAATTTATAAGTTAGTATTTACAAT
8293099 T
1 T
8293100 ATGAAAAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 14 0.52
30 9 0.33
31 4 0.15
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (32 bp):
TTTATAATAATTTATAAGTTAGTATTTACAAT
Found at i:8294684 original size:21 final size:21
Alignment explanation
Indices: 8294643--8294684 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8294633 TTTTCTAAAA
*
8294643 ATAATTAAAATAAATTAATAT
1 ATAATTAAAATAAATAAATAT
*
8294664 ATAATTATAA-AAATAAGATAT
1 ATAATTAAAATAAATAA-ATAT
8294685 TTATTTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
ATAATTAAAATAAATAAATAT
Found at i:8296447 original size:45 final size:45
Alignment explanation
Indices: 8296383--8296531 Score: 228
Period size: 45 Copynumber: 3.3 Consensus size: 45
8296373 CCCAAAGGCT
* ** *
8296383 TTTTGAAAACATCCTGCACT-ACAGGTCTTATGGATGACACGAAGG
1 TTTTGAAAACATCATGCACTGA-AGGTCTTACAGATGACCCGAAGG
8296428 TTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
*
8296473 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
*
8296518 TTTTGAAAATATCA
1 TTTTGAAAACATCA
8296532 AAAAGCTCCT
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 96 0.99
46 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCGAAGG
Found at i:8296612 original size:45 final size:45
Alignment explanation
Indices: 8296549--8297034 Score: 769
Period size: 45 Copynumber: 10.8 Consensus size: 45
8296539 CCTGAAGGCT
* * ** *
8296549 TTTTGAAAACATCCTGCACT-ACAGGTCTTATGGATGACACGAAGG
1 TTTTGAAAACATCATGCACTGA-AGGGCTTACAGATGACCCGAAGG
* * * *
8296594 TTTTGAAAACATTATGCACCGAAGGTCTTACAGATGACCCAAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
** *
8296639 TTTTGAAAACATCACACACTGACA-GTCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGA-AGGGCTTACAGATGACCCGAAGG
8296684 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
8296729 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCTGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
8296774 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
8296819 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
* *
8296864 TTTTGAAAACATCATGCATTGAAGGGCTTACAGATGACCCAAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
* *
8296909 TTTTGAAAACATCATGCACTGAATGGCTTACAGATGACCTGAAGG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
8296954 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGT
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
*
8296999 TTTTGAAAACATCATGCACTGAAGGGCTTATAGATG
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
8297035 TGGGAAATAG
Statistics
Matches: 411, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
44 1 0.00
45 408 0.99
46 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG
Found at i:8297328 original size:49 final size:50
Alignment explanation
Indices: 8297267--8297365 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
8297257 TTTTTGTAAG
8297267 GTATTTTTCTTCATGAATCTTC-TTTTCATACGAAAACCTGTAAAACTTC
1 GTATTTTTCTTCATGAATCTTCTTTTTCATACGAAAACCTGTAAAACTTC
8297316 GTATTTTTCTTCATGAATCTTCTTTTTCATACGAAAACCTGTAAAACTTC
1 GTATTTTTCTTCATGAATCTTCTTTTTCATACGAAAACCTGTAAAACTTC
8297366 ATGTTTGAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 22 0.45
50 27 0.55
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.43
Consensus pattern (50 bp):
GTATTTTTCTTCATGAATCTTCTTTTTCATACGAAAACCTGTAAAACTTC
Found at i:8297761 original size:22 final size:22
Alignment explanation
Indices: 8297726--8297831 Score: 162
Period size: 22 Copynumber: 4.9 Consensus size: 22
8297716 GAAATCCAAT
* *
8297726 AAATCT-T-ATCTTTGAAAATA
1 AAATCTATCATCTTTGAAGAGA
8297746 AAATCTATCATCTTTGAAGAGA
1 AAATCTATCATCTTTGAAGAGA
8297768 AAATCTATCATCTTTGAAGAGA
1 AAATCTATCATCTTTGAAGAGA
*
8297790 AAATTTATCATCTTTGAAGAGA
1 AAATCTATCATCTTTGAAGAGA
*
8297812 AAATCTATTATCTTTGAAGA
1 AAATCTATCATCTTTGAAGA
8297832 ATGTAGATGT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
20 6 0.08
21 1 0.01
22 72 0.91
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (22 bp):
AAATCTATCATCTTTGAAGAGA
Found at i:8305153 original size:14 final size:14
Alignment explanation
Indices: 8305136--8305172 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8305126 AAATATAATT
8305136 ATGCAAATATGAAA
1 ATGCAAATATGAAA
*
8305150 ATGCAAAAATGAAA
1 ATGCAAATATGAAA
*
8305164 ATGTAAATA
1 ATGCAAATA
8305173 CAAACGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.22
Consensus pattern (14 bp):
ATGCAAATATGAAA
Found at i:8308598 original size:15 final size:15
Alignment explanation
Indices: 8308578--8308618 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8308568 AAATACAAGT
8308578 AATAACTAAATTATA
1 AATAACTAAATTATA
*
8308593 AATAACTAAAATATA
1 AATAACTAAATTATA
*
8308608 AA-GACTAAATT
1 AATAACTAAATT
8308619 GAAATAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.29
Consensus pattern (15 bp):
AATAACTAAATTATA
Found at i:8309680 original size:3 final size:3
Alignment explanation
Indices: 8309672--8309726 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
8309662 TATATTTATT
* * * *
8309672 TAA TAA TAA TAA TTA TAA TAA TAA TAC TAA TAT TTA -AA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8309719 TAA TAA TA
1 TAA TAA TA
8309727 GTAGTAGTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 1 0.02
3 42 0.98
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:8309934 original size:85 final size:86
Alignment explanation
Indices: 8309790--8309963 Score: 332
Period size: 85 Copynumber: 2.0 Consensus size: 86
8309780 TGGTTACACC
8309790 ACCATCAAAAGCACATAGAAGCCATAACAAATTAAACCAAGTACCAATCAGCTAGAAAAATCAGA
1 ACCATCAAAAGCACATAGAAGCCATAACAAATTAAACCAAGTACCAATCAGCTAGAAAAATCAGA
*
8309855 TACTCACGCAATAGTCTGACA
66 TACTCACCCAATAGTCTGACA
8309876 ACCATCAAAAGCACATAGAAG-CATAACAAATTAAACCAAGTACCAATCAGCTAGAAAAATCAGA
1 ACCATCAAAAGCACATAGAAGCCATAACAAATTAAACCAAGTACCAATCAGCTAGAAAAATCAGA
8309940 TACTCACCCAATAGTCTGACA
66 TACTCACCCAATAGTCTGACA
8309961 ACC
1 ACC
8309964 TCTATAGCAT
Statistics
Matches: 87, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 66 0.76
86 21 0.24
ACGTcount: A:0.48, C:0.25, G:0.11, T:0.16
Consensus pattern (86 bp):
ACCATCAAAAGCACATAGAAGCCATAACAAATTAAACCAAGTACCAATCAGCTAGAAAAATCAGA
TACTCACCCAATAGTCTGACA
Found at i:8314504 original size:2 final size:2
Alignment explanation
Indices: 8314497--8314524 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8314487 ATTATGCATG
8314497 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8314525 TACTAATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8314575 original size:19 final size:19
Alignment explanation
Indices: 8314529--8314578 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8314519 ATATATTACT
* *
8314529 AATCATAATGTATTTAATTA
1 AATCATAATAT-TTTAATCA
*
8314549 AAT-TTAATATTTTAATCA
1 AATCATAATATTTTAATCA
8314567 AATCATAATATT
1 AATCATAATATT
8314579 ATTCTTCTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 10 0.40
19 12 0.48
20 3 0.12
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (19 bp):
AATCATAATATTTTAATCA
Found at i:8314625 original size:94 final size:94
Alignment explanation
Indices: 8314512--8314698 Score: 338
Period size: 94 Copynumber: 2.0 Consensus size: 94
8314502 TATATATATA
* * *
8314512 TATATATATATATTACTAATCATAATGTATTTAATTAAATTTAATATTTTAATCAAATCATAATA
1 TATATATATATAGTACTAATCATAATGTATTCAATTAAATTTAATATTATAATCAAATCATAATA
*
8314577 TTATTCTTCTTATATGACCTGAGTTTGAT
66 TTATTCTTCTTAGATGACCTGAGTTTGAT
8314606 TATATATATATAGTACTAATCATAATGTATTCAATTAAATTTAATATTATAATCAAATCATAATA
1 TATATATATATAGTACTAATCATAATGTATTCAATTAAATTTAATATTATAATCAAATCATAATA
8314671 TTATTCTTCTTAGATGACCTGAGTTTGA
66 TTATTCTTCTTAGATGACCTGAGTTTGA
8314699 GTAGTATAAT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (94 bp):
TATATATATATAGTACTAATCATAATGTATTCAATTAAATTTAATATTATAATCAAATCATAATA
TTATTCTTCTTAGATGACCTGAGTTTGAT
Found at i:8316315 original size:20 final size:22
Alignment explanation
Indices: 8316279--8316325 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
8316269 ATTAAATACC
8316279 TATTTTTATTGAATAAAAATAA
1 TATTTTTATTGAATAAAAATAA
* *
8316301 TATTTTT-TT-AATAAATATAT
1 TATTTTTATTGAATAAAAATAA
8316321 TATTT
1 TATTT
8316326 CGGGTCGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 14 0.61
21 2 0.09
22 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTTTTATTGAATAAAAATAA
Found at i:8318318 original size:47 final size:47
Alignment explanation
Indices: 8318267--8318367 Score: 148
Period size: 47 Copynumber: 2.1 Consensus size: 47
8318257 ACCTCCACCT
* * * *
8318267 GACCCGAACCTGGCCCAATTTTTTTAGATAAAATCCAAACTCGATCC
1 GACCCGAACCCGACCCAATATTTTGAGATAAAATCCAAACTCGATCC
* *
8318314 GACCCAAACCCGACCCAATATTTTGAGATAAAATCCGAACTCGATCC
1 GACCCGAACCCGACCCAATATTTTGAGATAAAATCCAAACTCGATCC
8318361 GACCCGA
1 GACCCGA
8318368 CTCAAAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.32, G:0.14, T:0.21
Consensus pattern (47 bp):
GACCCGAACCCGACCCAATATTTTGAGATAAAATCCAAACTCGATCC
Found at i:8320877 original size:34 final size:34
Alignment explanation
Indices: 8320834--8320901 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8320824 ATATATACAT
8320834 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
1 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
8320868 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
1 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
8320902 AACAAAGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.24
Consensus pattern (34 bp):
GATTACAAGAGATCAATTAGGCTACAATTAAGGA
Found at i:8325494 original size:34 final size:34
Alignment explanation
Indices: 8325451--8325518 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8325441 ATATATACAT
8325451 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
1 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
8325485 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
1 GATTACAAGAGATCAATTAGGCTACAATTAAGGA
8325519 AACAAAGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.24
Consensus pattern (34 bp):
GATTACAAGAGATCAATTAGGCTACAATTAAGGA
Found at i:8332018 original size:15 final size:15
Alignment explanation
Indices: 8331987--8332027 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8331977 GACTCTTTGT
*
8331987 TCAAAGTCCACTCTTG
1 TCAAAGT-CAATCTTG
8332003 TCAAAGTCAATCTTG
1 TCAAAGTCAATCTTG
*
8332018 TCAACGTCAA
1 TCAAAGTCAA
8332028 CGGTTTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (15 bp):
TCAAAGTCAATCTTG
Found at i:8357447 original size:16 final size:16
Alignment explanation
Indices: 8357423--8357454 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8357413 TCTAGTTTTT
*
8357423 CCCGGGTACCCGGTTA
1 CCCGAGTACCCGGTTA
8357439 CCCGAGTACCCGGTTA
1 CCCGAGTACCCGGTTA
8357455 GTTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.38, G:0.28, T:0.19
Consensus pattern (16 bp):
CCCGAGTACCCGGTTA
Found at i:8357679 original size:15 final size:15
Alignment explanation
Indices: 8357659--8357715 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
8357649 AACCGGGTAT
8357659 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
**
8357674 CGGGTACCCGCAAAATC
1 CGGGTACCCG-ATTA-C
*
8357691 CGAGTACCCGATTAC
1 CGGGTACCCGATTAC
8357706 CGGGTACCCG
1 CGGGTACCCG
8357716 TAACATTCGG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:8357785 original size:15 final size:16
Alignment explanation
Indices: 8357753--8357807 Score: 76
Period size: 15 Copynumber: 3.4 Consensus size: 16
8357743 GAAATCATCG
*
8357753 ACCCGGAAGTTCCGGGT
1 ACCCGGAA-ATCCGGGT
8357770 ACCCGGAAAT-CGGGT
1 ACCCGGAAATCCGGGT
*
8357785 ACCCGAAAATCCGGGT
1 ACCCGGAAATCCGGGT
8357801 ACCCGGA
1 ACCCGGA
8357808 TTTACACACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
15 14 0.41
16 12 0.35
17 8 0.24
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.13
Consensus pattern (16 bp):
ACCCGGAAATCCGGGT
Found at i:8358686 original size:108 final size:109
Alignment explanation
Indices: 8358442--8358687 Score: 316
Period size: 111 Copynumber: 2.2 Consensus size: 109
8358432 ATCCAAAACA
* * * * * * *
8358442 TAGCTTAAATCAATAGCGATGAGCTATTTTTCAACCAAGGTCTTTAAGTCAAATTTCAACTTCAC
1 TAGCTTAAGTCAACAACGATGAGTTATCTTCCAACCAAAGTCTTTAAGTCAAATTTCAACTTCAC
* * *
8358507 AACGAAGGCTTTTGAACTAAAAGAAGACCCAAAATCATCAACAATC
66 AACGAAAGCTATTGAACT--AAGAAGAACCAAAATCATCAACAATC
* *
8358553 TAGCTTAAGTCAACATCGATGAGTTATCTTCCAACCAAAGTCTTTAAGTCAAATTTTAACTTCAC
1 TAGCTTAAGTCAACAACGATGAGTTATCTTCCAACCAAAGTCTTTAAGTCAAATTTCAACTTCAC
* **
8358618 AACGAAAGCTATTGGACT-AGAAGAACCAAAATCATCTGCAATC
66 AACGAAAGCTATTGAACTAAGAAGAACCAAAATCATCAACAATC
8358661 TAGCTT-AGCTCAACAACGATGAGTTAT
1 TAGCTTAAG-TCAACAACGATGAGTTAT
8358688 TTTCTAATCA
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
107 2 0.02
108 45 0.38
111 72 0.61
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (109 bp):
TAGCTTAAGTCAACAACGATGAGTTATCTTCCAACCAAAGTCTTTAAGTCAAATTTCAACTTCAC
AACGAAAGCTATTGAACTAAGAAGAACCAAAATCATCAACAATC
Found at i:8359701 original size:3 final size:3
Alignment explanation
Indices: 8359682--8359761 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
8359672 ATTAGTATAG
*
8359682 TAT TAT ATAT TATT TAT TAT TAGT CT-T TAT TAT TATT TGT TAT TAT
1 TAT TAT -TAT TA-T TAT TAT TA-T -TAT TAT TAT TA-T TAT TAT TAT
* * *
8359728 TAT TAT T-T TTT TAT TAT TAG TAT TGTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT T
8359762 GTTAGATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
2 3 0.05
3 47 0.76
4 11 0.18
5 1 0.02
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8359716 original size:16 final size:15
Alignment explanation
Indices: 8359695--8359766 Score: 65
Period size: 16 Copynumber: 4.7 Consensus size: 15
8359685 TATATATTAT
8359695 TTATTATTAGTCTTTA
1 TTATTATTAGT-TTTA
*
8359711 TTATTATTTGTTATTA
1 TTATTATTAGTT-TTA
*
8359727 TTATTATT-TTTTTA
1 TTATTATTAGTTTTA
* *
8359741 TTATTAGTATTGTTTA
1 TTATTATTAGT-TTTA
*
8359757 TTATTGTTAG
1 TTATTATTAG
8359767 ATATACATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.21
15 5 0.11
16 32 0.68
ACGTcount: A:0.24, C:0.01, G:0.08, T:0.67
Consensus pattern (15 bp):
TTATTATTAGTTTTA
Found at i:8359730 original size:43 final size:42
Alignment explanation
Indices: 8359682--8359765 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 42
8359672 ATTAGTATAG
*
8359682 TATTA-TATATTATTTATTATTAGTCTT-TATTATTATTTGTTAT
1 TATTATTAT-TTATTTATTATTAGTATTGT-TTATTA-TTGTTAT
*
8359725 TATTATTATTTTTTTATTATTAGTATTGTTTATTATTGTTA
1 TATTATTATTTATTTATTATTAGTATTGTTTATTATTGTTA
8359766 GATATACATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
42 6 0.16
43 27 0.73
44 4 0.11
ACGTcount: A:0.26, C:0.01, G:0.06, T:0.67
Consensus pattern (42 bp):
TATTATTATTTATTTATTATTAGTATTGTTTATTATTGTTAT
Found at i:8359731 original size:13 final size:13
Alignment explanation
Indices: 8359682--8359745 Score: 71
Period size: 13 Copynumber: 5.0 Consensus size: 13
8359672 ATTAGTATAG
8359682 TATTATATATTATT
1 TATTAT-TATTATT
* *
8359696 TATTATTAGTCTT
1 TATTATTATTATT
8359709 TATTATTATT-TGT
1 TATTATTATTAT-T
8359722 TATTATTATTATT
1 TATTATTATTATT
8359735 T-TT-TTATTATT
1 TATTATTATTATT
8359746 AGTATTGTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
11 8 0.18
12 3 0.07
13 27 0.60
14 7 0.16
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.69
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:8362159 original size:2 final size:2
Alignment explanation
Indices: 8362152--8362204 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8362142 ACTTATCTAT
8362152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8362194 TA TA TA TA TA T
1 TA TA TA TA TA T
8362205 TAATATGTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8373549 original size:173 final size:174
Alignment explanation
Indices: 8373271--8374019 Score: 779
Period size: 183 Copynumber: 4.3 Consensus size: 174
8373261 TGGGTTTAAA
* *
8373271 ATGACAAAATCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTTCATTCAAATAAGTATCG
1 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCG
* * ** * * *
8373336 ATATTTATGGAATTTAAAAGAAATGCAATAATAGAGCCTATAAAGTATCGATATTTTATAAATAT
66 ATACTTATGAAATTTAAAAGAAAAACAAAAATAGAGCCTATAAAGTATCGATACTTTATAAACAT
*
8373401 GTATCGATATAATAT-GTAAAAATATGAAAAAATCGGTTTCATT
131 GTATCGATATAATATAGTAAAAATATGAAAAAATCAGTTTCATT
*
8373444 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCA
1 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCG
* * *
8373509 ATACTTATGAAATTTTAAAGAAAAACAAAAATAAAGCCTATAAAGTATCAATACTTTATAAACAT
66 ATACTTATGAAATTTAAAAGAAAAACAAAAATAGAGCCTATAAAGTATCGATACTTTATAAACAT
* * *
8373574 GTATCGCTACGTAATAATATAACAGGTAAAAATATGACAAAACCAATTTCATT
131 GTATCG--A--T-ATAATAT---A-GTAAAAATATGAAAAAATCAGTTTCATT
* ** * *
8373627 ATGACAAAACCGGTAAATCGCTATAGGATATGTTGAACGTATCGATTTCATTCAAATAAGTATCG
1 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCG
* * * *
8373692 ATACTT-TTAGAATTTAAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
66 ATACTTATGA-AATTTAAAAGAAAAACAAAAATAGAGCCTATAAAGTATCGATACTTTATAAACA
* * * *** *
8373756 TGTATCG-----ATACA-TAACAATAT---AACAT-A-TAAAAAT
130 TGTATCGATATAATATAGTAAAAATATGAAAAAATCAGTTTCATT
* * ** * *
8373790 ATGACAAAACCGATAAATCGCTAATGGATATGTTGAAGGTATTGATTCCATTCAAATAATTATCG
1 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCG
* * * * * * * *
8373855 ATATTTTTGGAATTTAAAAAAAAAAGAAATAATAGTGCCTATCAAGTATCGATATTTTATAAACA
66 ATACTTATGAAATTTAAAAGAAAAACAAA-AATAGAGCCTATAAAGTATCGATACTTTATAAACA
*
8373920 TGTATCGATATGTAACAATATAACAAGTAAAAATATGACAAAA-CTAGTTTCATT
130 TGTATCGATA--T---AATAT----AGTAAAAATATGAAAAAATC-AGTTTCATT
8373974 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGAT
1 ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGAT
8374020 ACTTTAATAA
Statistics
Matches: 475, Mismatches: 67, Indels: 57
0.79 0.11 0.10
Matches are distributed among these distances:
163 81 0.17
164 41 0.09
165 3 0.01
168 8 0.02
170 1 0.00
173 126 0.27
174 3 0.01
175 1 0.00
177 1 0.00
178 8 0.02
179 8 0.02
182 5 0.01
183 145 0.31
184 44 0.09
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (174 bp):
ATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATCG
ATACTTATGAAATTTAAAAGAAAAACAAAAATAGAGCCTATAAAGTATCGATACTTTATAAACAT
GTATCGATATAATATAGTAAAAATATGAAAAAATCAGTTTCATT
Found at i:8373958 original size:164 final size:163
Alignment explanation
Indices: 8373626--8373963 Score: 509
Period size: 164 Copynumber: 2.1 Consensus size: 163
8373616 CCAATTTCAT
* *
8373626 TATGACAAAACCGGTAAATCGCTATAGGATATGTTGAACGTATCGATTTCATTCAAATAAGTATC
1 TATGACAAAACCGATAAATCGCTATAGGATATGTTGAACGTATCGATTCCATTCAAATAAGTATC
* *
8373691 GATACTTTTAGAATTTAAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
66 GATACTTTTAGAATTTAAAAAAAAAGAAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
8373756 TGTATCGATACATAACAATATAACATATAAAAA
131 TGTATCGATACATAACAATATAACATATAAAAA
* * *
8373789 TATGACAAAACCGATAAATCGCTA-ATGGATATGTTGAAGGTATTGATTCCATTCAAATAATTAT
1 TATGACAAAACCGATAAATCGCTATA-GGATATGTTGAACGTATCGATTCCATTCAAATAAGTAT
* * * * *
8373853 CGATATTTTTGGAATTTAAAAAAAAAAGAAATAATAGTGCCTATCAAGTATCGATATTTTATAAA
65 CGATACTTTTAGAATTT-AAAAAAAAAGAAATAATAGCGCCTATAAAGTATCGATACTTTATAAA
**
8373918 CATGTATCGATATGTAACAATATAACA-AGTAAAAA
129 CATGTATCGATACATAACAATATAACATA-TAAAAA
8373953 TATGACAAAAC
1 TATGACAAAAC
8373964 TAGTTTCATT
Statistics
Matches: 158, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
162 1 0.01
163 73 0.46
164 84 0.53
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (163 bp):
TATGACAAAACCGATAAATCGCTATAGGATATGTTGAACGTATCGATTCCATTCAAATAAGTATC
GATACTTTTAGAATTTAAAAAAAAAGAAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
TGTATCGATACATAACAATATAACATATAAAAA
Found at i:8375027 original size:24 final size:24
Alignment explanation
Indices: 8374918--8375030 Score: 140
Period size: 24 Copynumber: 4.7 Consensus size: 24
8374908 AAATTAGGTA
* *
8374918 AAGTATCATATCA-AACTCCAGGTC
1 AAGTATCAGATCAGAA-TCCATGTC
*
8374942 AAGTATCAGATCAGAATCCAAGTC
1 AAGTATCAGATCAGAATCCATGTC
* *
8374966 AAGTATCAGATCAAAATCTATGT-
1 AAGTATCAGATCAGAATCCATGTC
*
8374989 TAGATATCAGATCAGAATCCATGTC
1 AAG-TATCAGATCAGAATCCATGTC
8375014 AAGTATCAGATCAGAAT
1 AAGTATCAGATCAGAAT
8375031 TCAAATCGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
23 2 0.03
24 71 0.92
25 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (24 bp):
AAGTATCAGATCAGAATCCATGTC
Found at i:8375046 original size:72 final size:71
Alignment explanation
Indices: 8374921--8375053 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 71
8374911 TTAGGTAAAG
* * *
8374921 TATCATATCAAACTCCAGGTCAAGTATCAGATCAGAATCCAAGTCAAGTATCAGATCAAAATCTA
1 TATCAGATCAAACTCCAGGTCAAGTATCAGATCAGAATCCAAATCAAGAATCAGAT-AAAATCTA
8374986 TGTTAGA
65 TGTTAGA
* *
8374993 TATCAGATCAGAA-TCCATGTCAAGTATCAGATCAGAATTCAAATCGAA-AATCAGATAAAAT
1 TATCAGATCA-AACTCCAGGTCAAGTATCAGATCAGAATCCAAATC-AAGAATCAGATAAAAT
8375054 ATTCATGTGA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
71 5 0.09
72 45 0.83
73 4 0.07
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (71 bp):
TATCAGATCAAACTCCAGGTCAAGTATCAGATCAGAATCCAAATCAAGAATCAGATAAAATCTAT
GTTAGA
Found at i:8377519 original size:13 final size:13
Alignment explanation
Indices: 8377501--8377563 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
8377491 CAACCGTCAA
8377501 CGGGTCAACGGGT
1 CGGGTCAACGGGT
8377514 CGGGTCAACAGGTTAGGT
1 CGGGTCAAC--G---GGT
* *
8377532 CGGATCAACGAGT
1 CGGGTCAACGGGT
*
8377545 CGGGTAAACGGGT
1 CGGGTCAACGGGT
8377558 CGGGTC
1 CGGGTC
8377564 GGGTCGGGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 26 0.67
15 1 0.03
16 1 0.03
18 11 0.28
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:8377564 original size:31 final size:31
Alignment explanation
Indices: 8377505--8377565 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
8377495 CGTCAACGGG
* * *
8377505 TCAACGGGTCGGGTCAACAGGTTAGGTCGGA
1 TCAACGAGTCGGGTAAACAGGTCAGGTCGGA
* *
8377536 TCAACGAGTCGGGTAAACGGGTCGGGTCGG
1 TCAACGAGTCGGGTAAACAGGTCAGGTCGG
8377566 GTCGGGTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.21, C:0.20, G:0.41, T:0.18
Consensus pattern (31 bp):
TCAACGAGTCGGGTAAACAGGTCAGGTCGGA
Found at i:8379723 original size:24 final size:24
Alignment explanation
Indices: 8379696--8379771 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
8379686 TATATCAAAA
8379696 ATCAAAACATAAAT-CAGGTCAAGT
1 ATCAAAACA-AAATCCAGGTCAAGT
* * *
8379720 ATCATATCAAACTCCAGGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
* * * *
8379744 ATCATATCAGAATCCAAGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
8379768 ATCA
1 ATCA
8379772 GATCAGAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 3 0.07
24 42 0.93
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (24 bp):
ATCAAAACAAAATCCAGGTCAAGT
Found at i:8379776 original size:24 final size:24
Alignment explanation
Indices: 8379713--8379780 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
8379703 CATAAATCAG
*
8379713 GTCAAGTATCATATCA-AACTCCAG
1 GTCAAGTATCATATCAGAA-TCCAA
8379737 GTCAAGTATCATATCAGAATCCAA
1 GTCAAGTATCATATCAGAATCCAA
*
8379761 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCATATCAGAAT
8379781 TCAAATCGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 39 0.95
25 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCATATCAGAATCCAA
Found at i:8382226 original size:13 final size:13
Alignment explanation
Indices: 8382208--8382255 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 13
8382198 AACGATCAAC
8382208 GGTCAACGGGTCG
1 GGTCAACGGGTCG
8382221 GGTCAACAGATCGGGTCG
1 GGT---CA-A-CGGGTCG
8382239 GGTCAACGGGTCG
1 GGTCAACGGGTCG
8382252 GGTC
1 GGTC
8382256 GGGTCGAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
13 14 0.47
14 1 0.03
15 2 0.07
16 2 0.07
17 1 0.03
18 10 0.33
ACGTcount: A:0.17, C:0.23, G:0.44, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:8382237 original size:18 final size:18
Alignment explanation
Indices: 8382214--8382260 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
8382204 CAACGGTCAA
8382214 CGGGTCGGGTCAACAGAT
1 CGGGTCGGGTCAACAGAT
* *
8382232 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACAGAT
8382250 CGGGTCGGGTC
1 CGGGTCGGGTC
8382261 GAGTTATGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.13, C:0.23, G:0.47, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGAT
Found at i:8387333 original size:200 final size:200
Alignment explanation
Indices: 8386986--8387515 Score: 846
Period size: 200 Copynumber: 2.6 Consensus size: 200
8386976 ACTATAGGTA
* *
8386986 TCGATACATTTATTA-ATAGTATCAATCCTCAAAACATCGAAACCAATTATTATAAAGTAATAGG
1 TCGATACATTTATTATA-AGTATCGATCCTCAAAACATCGAAACCGATTATTATAAAGTAATAGG
* *
8387050 TAAATTTACAATGTAACTGGTAAAAATATATCGGTTTAATGAAAGAATAGGTAAACATAATGTAT
65 TAAATTTACAATGTAACTGGTAAAAATATATCGATTTAATGAGAGAATAGGTAAACATAATGTAT
*
8387115 CGATACTTTTTAAAATTGTATCGATACTTTTTGTCCAGAATGAATGCCAAACGAGATGCACACAT
130 CAATACTTTTTAAAATTGTATCGATACTTTTTGTCCAGAATGAATGCCAAACGAGATGCACACAT
*
8387180 AAAGTG
195 AAAGTC
* * *
8387186 TTGATACATTTATTATAACTATCGATCCTCAAAACATCGAAACTGATTATTATAAAGTAATAGGT
1 TCGATACATTTATTATAAGTATCGATCCTCAAAACATCGAAACCGATTATTATAAAGTAATAGGT
** *
8387251 AAATTTACAATGTAACCAGTAAAAATATATCGATTTAATGAGAGAATAGGTAAACATAACGTATC
66 AAATTTACAATGTAACTGGTAAAAATATATCGATTTAATGAGAGAATAGGTAAACATAATGTATC
* * * * *
8387316 AATACTTTTTTAAATTGTATCGATACTTTTTGTCTAGAATGAATGTCAAACTAGATGTACACATA
131 AATACTTTTTAAAATTGTATCGATACTTTTTGTCCAGAATGAATGCCAAACGAGATGCACACATA
8387381 AAGTC
196 AAGTC
* *
8387386 TCAATACATTTATTATAAGTATCGATCCTCAAAACATTGAAACCGATTATTATAAAGTAATAGGT
1 TCGATACATTTATTATAAGTATCGATCCTCAAAACATCGAAACCGATTATTATAAAGTAATAGGT
* * *
8387451 AAATTTACAATGTAACTGGTAAAAATATACCGATCTAATGAGAAAATAGGTAAACATAATGTATC
66 AAATTTACAATGTAACTGGTAAAAATATATCGATTTAATGAGAGAATAGGTAAACATAATGTATC
8387516 GATGTATCGA
Statistics
Matches: 301, Mismatches: 28, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
200 300 1.00
201 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (200 bp):
TCGATACATTTATTATAAGTATCGATCCTCAAAACATCGAAACCGATTATTATAAAGTAATAGGT
AAATTTACAATGTAACTGGTAAAAATATATCGATTTAATGAGAGAATAGGTAAACATAATGTATC
AATACTTTTTAAAATTGTATCGATACTTTTTGTCCAGAATGAATGCCAAACGAGATGCACACATA
AAGTC
Found at i:8387859 original size:18 final size:18
Alignment explanation
Indices: 8387838--8387905 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
8387828 CAACGACATC
*
8387838 CTTCGTCTCAACCAAGCT
1 CTTCTTCTCAACCAAGCT
* *
8387856 CTTCTTCTCAACGATAAC-
1 CTTCTTCTCAACCA-AGCT
8387874 CTTCTTCTCAACCAAGCT
1 CTTCTTCTCAACCAAGCT
8387892 CTTCTTCT-AACCAA
1 CTTCTTCTCAACCAA
8387906 ATCAGGTCGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
17 8 0.19
18 33 0.77
19 2 0.05
ACGTcount: A:0.25, C:0.37, G:0.06, T:0.32
Consensus pattern (18 bp):
CTTCTTCTCAACCAAGCT
Found at i:8387877 original size:36 final size:36
Alignment explanation
Indices: 8387822--8387899 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
8387812 GAGGCGCGAA
* *
8387822 TCTTTTCAACGACATCCTTCGTCTCAACCAAGCTCT
1 TCTTCTCAACGACAACCTTCGTCTCAACCAAGCTCT
* *
8387858 TCTTCTCAACGATAACCTTCTTCTCAACCAAGCTCT
1 TCTTCTCAACGACAACCTTCGTCTCAACCAAGCTCT
8387894 TCTTCT
1 TCTTCT
8387900 AACCAAATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.36, G:0.06, T:0.36
Consensus pattern (36 bp):
TCTTCTCAACGACAACCTTCGTCTCAACCAAGCTCT
Found at i:8388211 original size:2 final size:2
Alignment explanation
Indices: 8388204--8388235 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8388194 ATGGGGAAGA
8388204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8388236 CTCCAGATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8392962 original size:20 final size:20
Alignment explanation
Indices: 8392917--8392962 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8392907 GTTTACATAA
*
8392917 AGTATCGATACATTTTGTAT
1 AGTATCGATACATTTTGTAC
* *
8392937 ATGTATCGATACTTTTTGTCC
1 A-GTATCGATACATTTTGTAC
8392958 AGTAT
1 AGTAT
8392963 GATTCCCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (20 bp):
AGTATCGATACATTTTGTAC
Found at i:8393052 original size:20 final size:20
Alignment explanation
Indices: 8393027--8393072 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8393017 ATACAAGACA
*
8393027 ATAAAAATGGTTAAAAATTG
1 ATAAAAATAGTTAAAAATTG
*
8393047 ATAAAACTAGTTAAAAATTG
1 ATAAAAATAGTTAAAAATTG
8393067 ATAAAA
1 ATAAAA
8393073 CCAGTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.28
Consensus pattern (20 bp):
ATAAAAATAGTTAAAAATTG
Found at i:8393073 original size:20 final size:20
Alignment explanation
Indices: 8393036--8393078 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8393026 AATAAAAATG
*
8393036 GTTAAAAATTGATAAAACTA
1 GTTAAAAATTGATAAAACCA
8393056 GTTAAAAATTGATAAAACCA
1 GTTAAAAATTGATAAAACCA
8393076 GTT
1 GTT
8393079 TCAATATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (20 bp):
GTTAAAAATTGATAAAACCA
Found at i:8395272 original size:182 final size:182
Alignment explanation
Indices: 8394888--8395272 Score: 625
Period size: 182 Copynumber: 2.1 Consensus size: 182
8394878 ATTAAATTTT
*
8394888 AAATATTAAATATATTATATATAACATATGGGCTCAACCCAAATCATTAAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTAAAAACCCAATTAATAA
* *
8394953 TTTACGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAATTTTT
66 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
*
8395018 TATTTTATAATTATATATTATTTAAATTAATTGTAACTGTTTTTTAATTAAA
131 TATTTTATAATTATATATTATTTAAATTAATTATAACTGTTTTTTAATTAAA
* *
8395070 AAATATTAAATATATTATATATAACATATGGGCT-AAGCCCAAACCATTTAAAACCTAATTAATA
1 AAATATTAAATATATTATATATAACATATGGGCTCAA-CCCAAACCATTAAAAACCCAATTAATA
*
8395134 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTTATCTAAAATT
65 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAA-TTATATAAAATT
*
8395199 TTTATTTTATAATTATTTATTATTTAAATTAATTATAAACT-TTTTTTGAATTAAA
129 TTTATTTTATAATTATATATTATTTAAATTAATTAT-AACTGTTTTTT-AATTAAA
*
8395254 AAATATTTAAT-T-TTATATA
1 AAATATTAAATATATTATATA
8395273 AATTAGAAAA
Statistics
Matches: 190, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
181 2 0.01
182 116 0.61
183 51 0.27
184 21 0.11
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (182 bp):
AAATATTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTAAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
TATTTTATAATTATATATTATTTAAATTAATTATAACTGTTTTTTAATTAAA
Found at i:8395774 original size:23 final size:21
Alignment explanation
Indices: 8395748--8395798 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
8395738 AATTATTATC
* *
8395748 ATTTTGATTTTCTTTATGTATGT
1 ATTTT-ATTTTATATAT-TATGT
8395771 ATTTATATTTTATATATTATGT
1 ATTT-TATTTTATATATTATGT
8395793 ATTTTA
1 ATTTTA
8395799 AATATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 2 0.08
22 9 0.36
23 13 0.52
24 1 0.04
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (21 bp):
ATTTTATTTTATATATTATGT
Found at i:8395797 original size:16 final size:16
Alignment explanation
Indices: 8395770--8395818 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
8395760 TTTATGTATG
8395770 TATT-TATATTTTATA
1 TATTATATATTTTATA
*
8395785 TATTATGTATTTTAAATA
1 TATTATATATTTT--ATA
8395803 TATTATATATTATTAT
1 TATTATATATT-TTAT
8395819 GTAAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 4 0.14
16 7 0.25
17 2 0.07
18 13 0.46
19 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATTATATATTTTATA
Found at i:8396359 original size:21 final size:21
Alignment explanation
Indices: 8396333--8396387 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
8396323 TTATACAGGT
8396333 AGTATCGATACCCCTTAGTGG
1 AGTATCGATACCCCTTAGTGG
8396354 AGTATCGATACCCCTTAGTGG
1 AGTATCGATACCCCTTAGTGG
* *
8396375 AGTACCAATACCC
1 AGTATCGATACCC
8396388 ATATGCTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (21 bp):
AGTATCGATACCCCTTAGTGG
Found at i:8402163 original size:20 final size:20
Alignment explanation
Indices: 8402126--8402164 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8402116 ATCAATATTG
*
8402126 TGTTCATCATGTATCGATAT
1 TGTTCATCATGTACCGATAT
8402146 TGTTCATACA-GTACCGATA
1 TGTTCAT-CATGTACCGATA
8402165 CTCCTTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTTCATCATGTACCGATAT
Found at i:8404273 original size:13 final size:13
Alignment explanation
Indices: 8404255--8404279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8404245 TCCCAATTGC
8404255 ATATTGATTATGA
1 ATATTGATTATGA
8404268 ATATTGATTATG
1 ATATTGATTATG
8404280 TGAACTAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
ATATTGATTATGA
Found at i:8404756 original size:18 final size:18
Alignment explanation
Indices: 8404733--8404793 Score: 113
Period size: 18 Copynumber: 3.4 Consensus size: 18
8404723 AGGGTAATAT
8404733 CGATACCATACAAGGTAC
1 CGATACCATACAAGGTAC
8404751 CGATACCATACAAGGTAC
1 CGATACCATACAAGGTAC
*
8404769 CGATACCATACAAGGTAT
1 CGATACCATACAAGGTAC
8404787 CGATACC
1 CGATACC
8404794 CTTATATATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (18 bp):
CGATACCATACAAGGTAC
Found at i:8413030 original size:13 final size:13
Alignment explanation
Indices: 8412990--8413034 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
8412980 GTTCCAACCC
8412990 GACCCGACCCGTT
1 GACCCGACCCGTT
* * *
8413003 TACCCAAACCGTT
1 GACCCGACCCGTT
*
8413016 GACCCGACCCATT
1 GACCCGACCCGTT
8413029 GACCCG
1 GACCCG
8413035 TTGACCGGTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.22, C:0.44, G:0.18, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:8416777 original size:2 final size:2
Alignment explanation
Indices: 8416770--8416803 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8416760 GTATGAATGA
8416770 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8416804 CCACGGTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8417861 original size:3 final size:3
Alignment explanation
Indices: 8417853--8417895 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8417843 CTAAAAATTG
8417853 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8417896 AAGATAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8420577 original size:31 final size:32
Alignment explanation
Indices: 8420453--8420577 Score: 126
Period size: 32 Copynumber: 3.9 Consensus size: 32
8420443 TTCTATAAAC
* * * *
8420453 TAATGACCATTTTTGTAACATTTTGATCACATT
1 TAATGACTA-TTTTGTAACAATTTGATAAAATT
*
8420486 TAGTGACTATTTTGTAACAATTTGATAAAATT
1 TAATGACTATTTTGTAACAATTTGATAAAATT
* * **
8420518 TAATGACCATTTTCTAACAATTCAAT-AAATT
1 TAATGACTATTTTGTAACAATTTGATAAAATT
* * *
8420549 TAATGGCTATCTTGTAACGATTTGATAAA
1 TAATGACTATTTTGTAACAATTTGATAAA
8420578 GATGGTGAGC
Statistics
Matches: 74, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
31 24 0.32
32 43 0.58
33 7 0.09
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (32 bp):
TAATGACTATTTTGTAACAATTTGATAAAATT
Found at i:8422199 original size:6 final size:6
Alignment explanation
Indices: 8422158--8422258 Score: 69
Period size: 6 Copynumber: 16.8 Consensus size: 6
8422148 TTGTTCGCTT
* * * * * *
8422158 TCTTCA TCATCA TCATCT TCTTCC TCGTCT TCTTCA TCTTCA TCTTCA
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA
* * * * * *
8422206 TCTTCA ACTTCC TCTTCA ACTTCC TCTTCA ACTTC- TACTTCT TCTTCA
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA T-CTTCA TCTTCA
*
8422254 ACTTC
1 TCTTC
8422259 TACTTCCTCT
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
6 72 0.99
7 1 0.01
ACGTcount: A:0.16, C:0.37, G:0.01, T:0.47
Consensus pattern (6 bp):
TCTTCA
Found at i:8422240 original size:18 final size:18
Alignment explanation
Indices: 8422219--8422270 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
8422209 TCAACTTCCT
*
8422219 CTTCAACTTCCTCTTCAA
1 CTTCTACTTCCTCTTCAA
*
8422237 CTTCTACTTCTTCTTCAA
1 CTTCTACTTCCTCTTCAA
8422255 CTTCTACTTCCTCTTC
1 CTTCTACTTCCTCTTC
8422271 TTCCTCTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTCTACTTCCTCTTCAA
Found at i:8422259 original size:12 final size:12
Alignment explanation
Indices: 8422189--8422240 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
8422179 TCCTCGTCTT
*
8422189 CTTCATCTTCAT
1 CTTCATCTTCAA
8422201 CTTCATCTTCAA
1 CTTCATCTTCAA
*
8422213 CTTCCTCTTCAA
1 CTTCATCTTCAA
*
8422225 CTTCCTCTTCAA
1 CTTCATCTTCAA
8422237 CTTC
1 CTTC
8422241 TACTTCTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.17, C:0.38, G:0.00, T:0.44
Consensus pattern (12 bp):
CTTCATCTTCAA
Found at i:8422282 original size:12 final size:12
Alignment explanation
Indices: 8422173--8422273 Score: 69
Period size: 12 Copynumber: 8.4 Consensus size: 12
8422163 ATCATCATCA
*
8422173 TCTTCTTCCTCG
1 TCTTCTTCCTCT
*
8422185 TCTTCTTCATCT
1 TCTTCTTCCTCT
* *
8422197 TCATCTTCATCT
1 TCTTCTTCCTCT
**
8422209 TCAACTTCCTCT
1 TCTTCTTCCTCT
**
8422221 TCAACTTCCTCT
1 TCTTCTTCCTCT
**
8422233 TCAACTT-CTACT
1 TCTTCTTCCT-CT
**
8422245 TCTTCTTCAACT
1 TCTTCTTCCTCT
*
8422257 TCTACTTCCTCT
1 TCTTCTTCCTCT
8422269 TCTTC
1 TCTTC
8422274 CTCTTCTTCC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
11 2 0.03
12 72 0.97
ACGTcount: A:0.13, C:0.38, G:0.01, T:0.49
Consensus pattern (12 bp):
TCTTCTTCCTCT
Found at i:8422813 original size:23 final size:23
Alignment explanation
Indices: 8422787--8422832 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8422777 TCATTAAAAA
8422787 CTCTTTCAATGAACTCAAGTTGG
1 CTCTTTCAATGAACTCAAGTTGG
8422810 CTCTTTCAATGAACTCAAGTTGG
1 CTCTTTCAATGAACTCAAGTTGG
8422833 GTTCTTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (23 bp):
CTCTTTCAATGAACTCAAGTTGG
Found at i:8426435 original size:40 final size:40
Alignment explanation
Indices: 8426380--8426501 Score: 226
Period size: 40 Copynumber: 3.0 Consensus size: 40
8426370 TGCAGGTTTA
8426380 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
* *
8426420 TAATACACTTTGGTGTATATGGTGGACACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
8426460 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
8426500 TA
1 TA
8426502 GAATTACGGT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:8427238 original size:21 final size:21
Alignment explanation
Indices: 8427205--8427244 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8427195 TATGTTATGA
* * *
8427205 TATTTTTATAATATCAATTAT
1 TATTTTAAGAATATAAATTAT
8427226 TATTTTAAGAATATAAATT
1 TATTTTAAGAATATAAATT
8427245 TTAAATCACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
TATTTTAAGAATATAAATTAT
Found at i:8430567 original size:24 final size:27
Alignment explanation
Indices: 8430534--8430583 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
8430524 AGCTATGTAT
*
8430534 GTGCGACTATT-GTTGAA-TAAAAATG
1 GTGCGACTATTGGATGAATTAAAAATG
8430559 GTGC-ACTATTGGATGAATTAAAAAT
1 GTGCGACTATTGGATGAATTAAAAAT
8430584 AAAGTCGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 9 0.41
26 7 0.32
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
GTGCGACTATTGGATGAATTAAAAATG
Found at i:8433829 original size:40 final size:40
Alignment explanation
Indices: 8433752--8433872 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 40
8433742 TGCAGGTTTA
* *
8433752 TAATACACTTCGGTGTATAT-GTGGGAACGACCTTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
*
8433791 TAATACACTTTGGTGTATATGGTGGGCACGACCGTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
*
8433831 TAATATACTTTGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
8433871 TA
1 TA
8433873 GCACTACGGT
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 19 0.25
40 57 0.75
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (40 bp):
TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:8437895 original size:64 final size:64
Alignment explanation
Indices: 8437811--8438035 Score: 238
Period size: 64 Copynumber: 3.5 Consensus size: 64
8437801 TTGTTTGAAT
* ** **
8437811 GTGCACCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGCAATT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATT
8437874 C
64 C
* * *
8437875 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGAAACATCGAATGCAATTG
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTC
* ** ** * ** *
8437939 GTGCATCGATGCATAAGGAGTGCATCGATGCATCCCAGCAATAATACTACATCGAATACCTTTT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTC
* * *
8438003 ATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCAT
8438036 ACCTTCATTA
Statistics
Matches: 136, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
64 131 0.96
65 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (64 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTC
Found at i:8438394 original size:10 final size:12
Alignment explanation
Indices: 8438339--8438374 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
8438329 TATATGTGTT
8438339 CATGTGATATGA
1 CATGTGATATGA
*
8438351 TATGTGATATGA
1 CATGTGATATGA
8438363 CATGTGATATGA
1 CATGTGATATGA
8438375 GAACATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (12 bp):
CATGTGATATGA
Found at i:8438424 original size:29 final size:29
Alignment explanation
Indices: 8438391--8438489 Score: 182
Period size: 29 Copynumber: 3.4 Consensus size: 29
8438381 ATGAAGTGAT
*
8438391 ATGAGATACATGATCACAAGAGAAATGAC
1 ATGAGCTACATGATCACAAGAGAAATGAC
8438420 ATGAGCTACATGATCACAAGAGAAATGAC
1 ATGAGCTACATGATCACAAGAGAAATGAC
8438449 ATGAGCTACATGATCACAAGAGAAATGAC
1 ATGAGCTACATGATCACAAGAGAAATGAC
8438478 ATGAG-TACATGA
1 ATGAGCTACATGA
8438490 ACATATGAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
28 7 0.10
29 62 0.90
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.18
Consensus pattern (29 bp):
ATGAGCTACATGATCACAAGAGAAATGAC
Found at i:8438591 original size:15 final size:15
Alignment explanation
Indices: 8438573--8438620 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
8438563 GAGGGTATAA
8438573 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
8438588 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
*
8438603 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGACG
8438618 TAG
1 TAG
8438621 GAGTCCTGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.15, C:0.23, G:0.33, T:0.29
Consensus pattern (15 bp):
TAGTCCTTCGGGACG
Found at i:8455047 original size:12 final size:13
Alignment explanation
Indices: 8455015--8455048 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
8455005 CATTTTGAAT
8455015 TTTC-TTTTAAAC
1 TTTCTTTTTAAAC
8455027 TTTCTTTTTAAA-
1 TTTCTTTTTAAAC
8455039 TTTCTTTTTA
1 TTTCTTTTTA
8455049 TATTCTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTCTTTTTAAAC
Found at i:8457047 original size:333 final size:332
Alignment explanation
Indices: 8456443--8457108 Score: 1257
Period size: 333 Copynumber: 2.0 Consensus size: 332
8456433 ACAAATGAGG
8456443 AAATCAGGGACTTGTTCGACATGAACCCTCTCAAAGCACCCAGTGCAGATGGCCTCCATGCACTC
1 AAATCAGGGACTTGTTCGACATGAACCCTCTCAAAGCACCCAGTGCAGATGGCCTCCATGCACTC
*
8456508 TTCTTCCAAGACAATGAGACACAGTCGGAGAATCTGTATGTCGCTGGGTGAAAAGAGTGTTTTTT
66 TTCTTCCAAGACAATGAGACACAGTCGAAGAATCTGTATGTCGCTGGGTGAAAAGAGTGTTTTTT
8456573 GACAACCAATCGAACCTTAGCTCAGCAAACACTTATCGTATTTATCCTAAAGACAGCTAGCCTTG
131 GACAACCAATCGAACCTTAGCTCAGCAAACACTTATCGTATTTATCCTAAAGACAGCTAGCCTTG
8456638 AAATACTATCAGTTTAGACCCATCAGCATGTGCACGGTACTTTACAAACTCATTATGAAGATAAT
196 AAATACTATCAGTTTAGACCCATCAGCATGTGCACGGTACTTTACAAACTCATTATGAAGATAAT
8456703 TGTGAATCGATTCAAAGTCATCATTCCAAAAATCATCACACTGAACCAAGC-ACGCTTTATAGTC
261 TGTGAATCGATTCAAAGTCATCATTCCAAAAATCATCACACTGAACCAAGCAACGCTTTATAGTC
8456767 GGGCGAA
326 GGGCGAA
8456774 AAATCAGGGAACCTTGTTCGACATGAACCCTCTCAAAGCACCCAGTGCAGATGGCCTCCATGCAC
1 AAATCAGGG-A-CTTGTTCGACATGAACCCTCTCAAAGCACCCAGTGCAGATGGCCTCCATGCAC
8456839 TCTTCTTCCAAGACAATGAGACACAGTCGAAGAATCTGTATGTCGCTGGGTG-AAA-AGTGTTTT
64 TCTTCTTCCAAGACAATGAGACACAGTCGAAGAATCTGTATGTCGCTGGGTGAAAAGAGTGTTTT
8456902 TTGACAACCAATCGAACCTTAGCTCAGCAAAACACTTATCGTATTTATCCTAAAGACAGCTAGCC
129 TTGACAACCAATCGAACCTTAGCTCAGC-AAACACTTATCGTATTTATCCTAAAGACAGCTAGCC
8456967 TTGAAATACTACTCAGTTTAGACCCATCAGCATGTGCACGGTACTTTACAAACTCATTATGAAGA
193 TTGAAATACTA-TCAGTTTAGACCCATCAGCATGTGCACGGTACTTTACAAACTCATTATGAAGA
*
8457032 TAATTGTGAATCGATTCAAAGTCATCATTCCAAAAATCATCACACTGAACCAAGCAAGGCTTTAT
257 TAATTGTGAATCGATTCAAAGTCATCATTCCAAAAATCATCACACTGAACCAAGCAACGCTTTAT
8457097 AGTCGGGCGAA
322 AGTCGGGCGAA
8457108 A
1 A
8457109 CAACATACTA
Statistics
Matches: 328, Mismatches: 2, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
331 45 0.14
332 51 0.16
333 212 0.65
334 20 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (332 bp):
AAATCAGGGACTTGTTCGACATGAACCCTCTCAAAGCACCCAGTGCAGATGGCCTCCATGCACTC
TTCTTCCAAGACAATGAGACACAGTCGAAGAATCTGTATGTCGCTGGGTGAAAAGAGTGTTTTTT
GACAACCAATCGAACCTTAGCTCAGCAAACACTTATCGTATTTATCCTAAAGACAGCTAGCCTTG
AAATACTATCAGTTTAGACCCATCAGCATGTGCACGGTACTTTACAAACTCATTATGAAGATAAT
TGTGAATCGATTCAAAGTCATCATTCCAAAAATCATCACACTGAACCAAGCAACGCTTTATAGTC
GGGCGAA
Found at i:8459904 original size:20 final size:20
Alignment explanation
Indices: 8459879--8459946 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
8459869 AAACTATATA
8459879 TATATAGTTTACCTATGAAC
1 TATATAGTTTACCTATGAAC
* * *
8459899 TATATA-TATAAACTATATACAC
1 TATATAGT-TTACCTAT-GA-AC
*
8459921 TATATAGTTTACATATGAAC
1 TATATAGTTTACCTATGAAC
*
8459941 TCTATA
1 TATATA
8459947 TATAGTTTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
19 1 0.03
20 19 0.53
21 2 0.06
22 13 0.36
23 1 0.03
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (20 bp):
TATATAGTTTACCTATGAAC
Found at i:8459904 original size:22 final size:22
Alignment explanation
Indices: 8459877--8459970 Score: 72
Period size: 22 Copynumber: 4.3 Consensus size: 22
8459867 GTAAACTATA
8459877 TATATATAGTTTACCTATGAAC
1 TATATATAGTTTACCTATGAAC
* *
8459899 TATATATA--TAAACTAT-ATAC
1 TATATATAGTTTACCTATGA-AC
*
8459919 -ACTATATAGTTTACATATGAACTC
1 TA-TATATAGTTTACCTATGAA--C
*
8459943 TATATATAGTTTA-TTAATGAAC
1 TATATATAGTTTACCT-ATGAAC
8459965 TATATA
1 TATATA
8459971 AACTATTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
19 2 0.04
20 14 0.25
22 21 0.37
23 2 0.04
24 17 0.30
25 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.41
Consensus pattern (22 bp):
TATATATAGTTTACCTATGAAC
Found at i:8459931 original size:42 final size:39
Alignment explanation
Indices: 8459868--8459950 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 39
8459858 TATTTATTTG
*
8459868 TAAACTATATATATATAGTTTACCTATGAACTATATATA
1 TAAACTATATATATATAGTTTACATATGAACTATATATA
*
8459907 TAAACTATATACACTATATAGTTTACATATGAACTCTATATA
1 TAAACTATAT--A-TATATAGTTTACATATGAACTATATATA
8459949 TA
1 TA
8459951 GTTTATTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
39 10 0.26
41 1 0.03
42 28 0.72
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (39 bp):
TAAACTATATATATATAGTTTACATATGAACTATATATA
Found at i:8459962 original size:24 final size:24
Alignment explanation
Indices: 8459921--8459970 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
8459911 CTATATACAC
*
8459921 TATATAGTTTACATATGAACTCTA
1 TATATAGTTTACATATGAACTATA
*
8459945 TATATAGTTTA-TTAATGAACTATA
1 TATATAGTTTACAT-ATGAACTATA
8459969 TA
1 TA
8459971 AACTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (24 bp):
TATATAGTTTACATATGAACTATA
Found at i:8459976 original size:9 final size:9
Alignment explanation
Indices: 8459962--8460026 Score: 53
Period size: 9 Copynumber: 7.0 Consensus size: 9
8459952 TTTATTAATG
8459962 AACTATATA
1 AACTATATA
8459971 AACTATTTATA
1 AACTA--TATA
*
8459982 TACTATAT-
1 AACTATATA
8459990 AA-TATATA
1 AACTATATA
*
8459998 CTACATATATA
1 -AAC-TATATA
8460009 AACTATATA
1 AACTATATA
*
8460018 TACTATATA
1 AACTATATA
8460027 GTTTACATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 5 0.11
8 1 0.02
9 23 0.51
10 2 0.04
11 14 0.31
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (9 bp):
AACTATATA
Found at i:8459977 original size:20 final size:20
Alignment explanation
Indices: 8459954--8460026 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
8459944 ATATATAGTT
8459954 TATTAATGA-ACTATATAAAC
1 TATTAAT-ATACTATATAAAC
*
8459974 TATTTATATACTATAT-AA-
1 TATTAATATACTATATAAAC
8459992 TA-T-ATACTACATATATAAAC
1 TATTAATA-TAC-TATATAAAC
8460012 TA-T-ATATACTATATA
1 TATTAATATACTATATA
8460027 GTTTACATAG
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
16 3 0.06
17 4 0.09
18 13 0.28
19 8 0.17
20 19 0.40
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (20 bp):
TATTAATATACTATATAAAC
Found at i:8459979 original size:24 final size:24
Alignment explanation
Indices: 8459935--8459980 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8459925 TAGTTTACAT
* *
8459935 ATGAACTCTATATATAGTTTATTA
1 ATGAACTATATAAATAGTTTATTA
8459959 ATGAACTATATAAACTA-TTTAT
1 ATGAACTATATAAA-TAGTTTAT
8459981 ATACTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (24 bp):
ATGAACTATATAAATAGTTTATTA
Found at i:8460127 original size:27 final size:27
Alignment explanation
Indices: 8460067--8460145 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
8460057 TAAACTATAA
*
8460067 TTTA-TATATACTATATACTATAGT-TG
1 TTTATTATATACTATATAATATA-TATG
*
8460093 -CTATTTATATACTATATAATATATATG
1 TTTA-TTATATACTATATAATATATATG
8460120 TTTATTAT-TAC-ATATGAACTATATAT
1 TTTATTATATACTATAT-AA-TATATAT
8460146 AACTATATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
25 6 0.14
26 6 0.14
27 30 0.68
28 2 0.05
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
TTTATTATATACTATATAATATATATG
Found at i:8460202 original size:18 final size:18
Alignment explanation
Indices: 8460179--8460225 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 18
8460169 TATATATATT
8460179 TTTATAAACTATAAACTA
1 TTTATAAACTATAAACTA
*
8460197 TTTAT-AA-TATATACTA
1 TTTATAAACTATAAACTA
* *
8460213 TATATAACCTATA
1 TTTATAAACTATA
8460226 TAAACTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
18 9 0.38
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTATAAACTATAAACTA
Found at i:8460226 original size:18 final size:17
Alignment explanation
Indices: 8460137--8460227 Score: 60
Period size: 19 Copynumber: 5.1 Consensus size: 17
8460127 TTACATATGA
8460137 ACTATATATAACTATAT
1 ACTATATATAACTATAT
* *
8460154 AGTTTACATATGAACTATAT
1 A--CTATATAT-AACTATAT
* *
8460174 A-TATTTTTATAAACTATAA
1 ACTA--TATAT-AACTATAT
*
8460193 ACTATTTATAA-TATAT
1 ACTATATATAACTATAT
8460209 ACTATATATAACCTATAT
1 ACTATATATAA-CTATAT
8460227 A
1 A
8460228 AACTATATTT
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
16 14 0.24
17 5 0.09
18 11 0.19
19 17 0.29
20 11 0.19
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (17 bp):
ACTATATATAACTATAT
Found at i:8460296 original size:28 final size:29
Alignment explanation
Indices: 8460260--8460356 Score: 83
Period size: 28 Copynumber: 3.3 Consensus size: 29
8460250 TATATAGTTG
*
8460260 ATATTTATA-TTATATATATAAACTATAT
1 ATATATATACTTATATATATAAACTATAT
* * *
8460288 A-ATTATATAGTT-TACATATGAACTATAT
1 ATA-TATATACTTATATATATAAACTATAT
* *
8460316 ATATATATACATAAACTATATAAACTATAGT
1 ATATATATACTTATA-TATATAAACTATA-T
*
8460347 TTATATATAC
1 ATATATATAC
8460357 AATTTAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 28 0.52
29 4 0.07
30 11 0.20
31 10 0.19
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (29 bp):
ATATATATACTTATATATATAAACTATAT
Found at i:8462657 original size:327 final size:324
Alignment explanation
Indices: 8462065--8462716 Score: 1277
Period size: 327 Copynumber: 2.0 Consensus size: 324
8462055 ATCCCTAATT
8462065 ATTTCATGCAGACGGTATCCATACCTAAAGGCATATGCGACAAAATCGAACAAAAAGCTAGAAGC
1 ATTTCATGCAGACGGTATCCATACCTAAAGGCATATGCGACAAAATCGAACAAAAAGCTAGAAGC
8462130 ATTATAGGGTGTCATCAGCGCCAATCGAAAACCAGTTTTTGTTAGCTGGGATCGATGTTGCCAGC
66 ATTATAGGGTGTCATCAGCGCCAATCGAAAACCAGTTTTTGTTAGCTGGGATCGATGTTGCCAGC
8462195 CTACGGGAAATGGAGGCCTAGGTATTAAAAAATTGTTAACCCAAAACGATGCATTCTTGCTTAAA
131 CTACGGGAAATGGAGGCCTAGGTATTAAAAAATTGTTAACCCAAAACGATGCATTCTTGCTTAAA
8462260 TTAGGGTTCAATCTATTGGCCGATGAAGATGCACTATGGAAACGAGTGTTTCGATCTAAATACAA
196 TTAGGGTTCAATCTATTGGCCGATGAAGATGCACTATGGAAACGAGTGTTTCGATCTAAATACAA
8462325 CATCAAGGATTCAATTCCTACAACGACTAGACGACGCCGATGCTCATTTGTTTTGAAAATCCTTG
261 CATCAAGGATTCAATTCCTACAACGACTAGACGACGCCGATGCTCATTTG-TTTGAAAATCCTTG
8462390 ATTTCATGCAGACGGTATCCATACCTAAAGGCATATGCGACAAAATCGAACAAAAAGCTAGAAGC
1 ATTTCATGCAGACGGTATCCATACCTAAAGGCATATGCGACAAAATCGAACAAAAAGCTAGAAGC
8462455 ATTATAGGGGTGTCATCAGCAGCCAATCGAAAACCAGTTTTTGTTAGCTGGGATCGATGTTGCCA
66 ATTATA-GGGTGTCATCAGC-GCCAATCGAAAACCAGTTTTTGTTAGCTGGGATCGATGTTGCCA
8462520 GCCTACGGGAAATGGAGGCCTAGGTATTAAAAAATTGTTAACCCAAAACGATGCATTCTTGCTTA
129 GCCTACGGGAAATGGAGGCCTAGGTATTAAAAAATTGTTAACCCAAAACGATGCATTCTTGCTTA
8462585 AATTAGGGTTCAATCTATTGGCCGATGAAGATGCACTATGGAAACGAGTGTTTCGATCTAAATAC
194 AATTAGGGTTCAATCTATTGGCCGATGAAGATGCACTATGGAAACGAGTGTTTCGATCTAAATAC
8462650 AACATCAAGGATTCAATTCCTACAACGACTAGACGACGCCGATGCTCATTTGTTTGAAAATCCTT
259 AACATCAAGGATTCAATTCCTACAACGACTAGACGACGCCGATGCTCATTTGTTTGAAAATCCTT
8462715 G
324 G
8462716 A
1 A
8462717 GTCAAGTATT
Statistics
Matches: 325, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
325 71 0.22
326 28 0.09
327 226 0.70
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (324 bp):
ATTTCATGCAGACGGTATCCATACCTAAAGGCATATGCGACAAAATCGAACAAAAAGCTAGAAGC
ATTATAGGGTGTCATCAGCGCCAATCGAAAACCAGTTTTTGTTAGCTGGGATCGATGTTGCCAGC
CTACGGGAAATGGAGGCCTAGGTATTAAAAAATTGTTAACCCAAAACGATGCATTCTTGCTTAAA
TTAGGGTTCAATCTATTGGCCGATGAAGATGCACTATGGAAACGAGTGTTTCGATCTAAATACAA
CATCAAGGATTCAATTCCTACAACGACTAGACGACGCCGATGCTCATTTGTTTGAAAATCCTTG
Found at i:8463613 original size:61 final size:65
Alignment explanation
Indices: 8463492--8463619 Score: 219
Period size: 61 Copynumber: 2.0 Consensus size: 65
8463482 GTAATATCCT
8463492 GGGCCAAAGTGATGGGAACAACAAAGGCGACATGTGCACTACATCAACCATCGACATGAAGGGAA
1 GGGCCAAAGTGATGGGAACAACAAAGGCGACATGTG-ACTACATCAACCATCGACATGAAGGGAA
8463557 C
65 C
8463558 GGGCCAAAGTGATGGGAAC-A-AAAGGCGACATGTG-C-ACATCAACCATCGACATGAAGGGAAC
1 GGGCCAAAGTGATGGGAACAACAAAGGCGACATGTGACTACATCAACCATCGACATGAAGGGAAC
8463619 G
1 G
8463620 ACAATGGACG
Statistics
Matches: 62, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
61 27 0.44
62 1 0.02
64 14 0.23
65 1 0.02
66 19 0.31
ACGTcount: A:0.38, C:0.22, G:0.29, T:0.12
Consensus pattern (65 bp):
GGGCCAAAGTGATGGGAACAACAAAGGCGACATGTGACTACATCAACCATCGACATGAAGGGAAC
Found at i:8465974 original size:2 final size:2
Alignment explanation
Indices: 8465969--8465996 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8465959 AAAAAAATTC
8465969 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8465997 AGTGGTTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8469941 original size:25 final size:25
Alignment explanation
Indices: 8469893--8469941 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
8469883 GGCCTAAAAG
* *
8469893 CAATTTAAAACTTACCAATTTAGAT
1 CAATTTAAAAATTACCAATATAGAT
8469918 CAATTTAAGAAATTACCAA-ATAGA
1 CAATTTAA-AAATTACCAATATAGA
8469942 GTCATTAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (25 bp):
CAATTTAAAAATTACCAATATAGAT
Found at i:8472535 original size:25 final size:24
Alignment explanation
Indices: 8472491--8472538 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 24
8472481 CCTAAAAAAT
8472491 TACAAAATATAACATGAACAACTCC
1 TACAAAATATAACA-GAACAACTCC
8472516 TACAAAATATTTAACA-AACAACT
1 TACAAAATA--TAACAGAACAACT
8472539 AAACTTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
25 16 0.76
27 5 0.24
ACGTcount: A:0.54, C:0.21, G:0.02, T:0.23
Consensus pattern (24 bp):
TACAAAATATAACAGAACAACTCC
Found at i:8475354 original size:26 final size:26
Alignment explanation
Indices: 8475307--8475357 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
8475297 TTTGCTCGAA
*
8475307 TGGTTTCTTTTTGGTCTGTTGGTTCT
1 TGGTTTCTTTTTGCTCTGTTGGTTCT
*
8475333 TGGTTT-TTTTTGTCTCTTTTGGTTC
1 TGGTTTCTTTTTG-CTCTGTTGGTTC
8475358 CTTGTTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.00, C:0.12, G:0.24, T:0.65
Consensus pattern (26 bp):
TGGTTTCTTTTTGCTCTGTTGGTTCT
Found at i:8476061 original size:31 final size:30
Alignment explanation
Indices: 8476005--8476066 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
8475995 ATATATTTCC
* *
8476005 AAAATTATTTTCAGACTATATTATATATAT
1 AAAATTATTTTCAAACTATACTATATATAT
8476035 AAAATTATTTTCAAAACTATACTATATATAT
1 AAAATTATTTTC-AAACTATACTATATATAT
8476066 A
1 A
8476067 TTTTCCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (30 bp):
AAAATTATTTTCAAACTATACTATATATAT
Found at i:8476166 original size:48 final size:47
Alignment explanation
Indices: 8476052--8476297 Score: 311
Period size: 48 Copynumber: 5.1 Consensus size: 47
8476042 TTTTCAAAAC
*
8476052 TATACTATATATATATTTTCCAAAATTATTTTCAAAA-TATAC--CATA
1 TATA-TATATATATATTTTCC-AAATTATTTTCAAAACTATACTATATA
8476098 TATATATATATATA-TTTCCAAATTATTTTCAAAACTATACTATATA
1 TATATATATATATATTTTCCAAATTATTTTCAAAACTATACTATATA
*
8476144 TATATATATATATATTTTTCCAAATTATTTTCAAAGCTATACTATATA
1 TATATATATATATA-TTTTCCAAATTATTTTCAAAACTATACTATATA
* * * *
8476192 TATATATATATATATATTCAAAATTATTTACAAAACTATATATATATATATAA
1 TATATATATATATATTTTCCAAATTATTTTCAAAAC----TATA-CTATAT-A
*
8476245 TATATATATATATATATTTCCAAATTATTTTCTAAACTATACTATATA
1 TATATATATATATAT-TTTCCAAATTATTTTCAAAACTATACTATATA
8476293 TATAT
1 TATAT
8476298 TTCCAAATTA
Statistics
Matches: 176, Mismatches: 12, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
43 15 0.09
44 10 0.06
45 10 0.06
46 21 0.12
47 18 0.10
48 51 0.29
49 5 0.03
50 4 0.02
51 4 0.02
52 5 0.03
53 16 0.09
54 17 0.10
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (47 bp):
TATATATATATATATTTTCCAAATTATTTTCAAAACTATACTATATA
Found at i:8476193 original size:2 final size:2
Alignment explanation
Indices: 8476181--8476261 Score: 64
Period size: 2 Copynumber: 41.5 Consensus size: 2
8476171 TTTTCAAAGC
* *
8476181 TA TA CTA TA TA TA TA TA TA TA TA TA TA T- TCA -A AA T- TA TT TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* *
8476222 CA -A AA CTA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA T
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8476262 TTCCAAATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
1 5 0.08
2 58 0.88
3 3 0.05
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:8476249 original size:15 final size:15
Alignment explanation
Indices: 8476229--8476258 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8476219 TTACAAAACT
8476229 ATATATATATATATA
1 ATATATATATATATA
8476244 ATATATATATATATA
1 ATATATATATATATA
8476259 TATTTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATATATATA
Found at i:8476297 original size:55 final size:52
Alignment explanation
Indices: 8476095--8476297 Score: 219
Period size: 54 Copynumber: 4.0 Consensus size: 52
8476085 AAAATATACC
* * *
8476095 ATATATATATATATATAT-TTCCAAATTATTTTCAAAACTATA-CTATATAT
1 ATATATATATATATATATATTCAAAATTATTTACAAAACTATATATATATAT
* * * *
8476145 ATATATATATATAT-T-T-TTCCAAATTATTTTCAAAGC----TATA-CTAT
1 ATATATATATATATATATATTCAAAATTATTTACAAAACTATATATATATAT
8476189 ATATATATATATATATATATTCAAAATTATTTACAAAACTATATATATATAT
1 ATATATATATATATATATATTCAAAATTATTTACAAAACTATATATATATAT
* * *
8476241 ATAATATATATATATATATATTTCCAAATTATTTTCTAAACTATACTATATATAT
1 AT-ATATATATATATATATA-TTCAAAATTATTTACAAAACTATA-TATATATAT
8476296 AT
1 AT
8476298 TTCCAAATTA
Statistics
Matches: 131, Mismatches: 10, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
44 17 0.13
45 3 0.02
46 1 0.01
47 17 0.13
48 20 0.15
49 1 0.01
50 14 0.11
51 4 0.03
52 5 0.04
53 17 0.13
54 21 0.16
55 11 0.08
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.46
Consensus pattern (52 bp):
ATATATATATATATATATATTCAAAATTATTTACAAAACTATATATATATAT
Found at i:8476843 original size:88 final size:88
Alignment explanation
Indices: 8476743--8476999 Score: 390
Period size: 88 Copynumber: 2.9 Consensus size: 88
8476733 GGAAGACGTG
* * *
8476743 TCTGCTCTACTACTCTTTAGGGAAGATCAAACTCGAGGTTGATTTGCTTCGTTGCTCTTCAGGAA
1 TCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGGTTGATTTGCTTCGTTGCTCTTCAGGAA
*
8476808 GACCAAATCTAAAAGAAGAAGAA
66 GACCAAATCTGAAAGAAGAAGAA
* * * * *
8476831 TCTGCTCCACTACTCTTTAGGGGAGAACAGACTCGTGGTTGATTTGTTTTGCTT-CTCTTTAGGA
1 TCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGGTTGATTTGCTTCG-TTGCTCTTCAGGA
8476895 AGACCAAATCTGAAAGAAGAAGAA
65 AGACCAAATCTGAAAGAAGAAGAA
* * *
8476919 TCTACTTCACTACTCTTTAGGGGAGATCAGACTCGAGGTTGATTTGCTTCGCTGCTCTTCAGGAA
1 TCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGGTTGATTTGCTTCGTTGCTCTTCAGGAA
8476984 GACCAAATCTGAAAGA
66 GACCAAATCTGAAAGA
8477000 TTGACATCTC
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 147 0.98
89 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (88 bp):
TCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGGTTGATTTGCTTCGTTGCTCTTCAGGAA
GACCAAATCTGAAAGAAGAAGAA
Found at i:8477070 original size:38 final size:37
Alignment explanation
Indices: 8477027--8477139 Score: 91
Period size: 38 Copynumber: 3.2 Consensus size: 37
8477017 GGAATTCGAG
*
8477027 GATTGACTCCTATTCGTGAGTGAGTTAGGAATAACAAA
1 GATTGACTCCT-TTCGTGAGTGAGTCAGGAATAACAAA
* * *
8477065 GATTGACTTCTTT--T---T-A-TGAGGAAGT--CAAT
1 GATTGACTCCTTTCGTGAGTGAGTCAGGAA-TAACAAA
*
8477094 GATTGACTCCTCTTCGTGAGGGAGTCAGGAATAACAAA
1 GATTGACTCCT-TTCGTGAGTGAGTCAGGAATAACAAA
8477132 GATTGACT
1 GATTGACT
8477140 TCTGTTCACG
Statistics
Matches: 57, Mismatches: 7, Indels: 22
0.66 0.08 0.26
Matches are distributed among these distances:
29 13 0.23
30 8 0.14
31 2 0.04
32 2 0.04
35 1 0.02
36 2 0.04
37 8 0.14
38 21 0.37
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (37 bp):
GATTGACTCCTTTCGTGAGTGAGTCAGGAATAACAAA
Found at i:8477103 original size:67 final size:67
Alignment explanation
Indices: 8476995--8477220 Score: 299
Period size: 67 Copynumber: 3.4 Consensus size: 67
8476985 ACCAAATCTG
* * * * * *
8476995 AAAGATTGACATCTCTTCACGAGGAATTCGAGGATTGACTCCTATTCGTGAGTGAGTTAGGAATA
1 AAAGATTGACTTCTCTTCACGAGGAAATCAATGATTGACTCCTCTTCGTGAGGGAGTTAGGAATA
8477060 AC
66 AC
* * * * *
8477062 AAAGATTGACTTCTTTTTATGAGGAAGTCAATGATTGACTCCTCTTCGTGAGGGAGTCAGGAATA
1 AAAGATTGACTTCTCTTCACGAGGAAATCAATGATTGACTCCTCTTCGTGAGGGAGTTAGGAATA
8477127 AC
66 AC
* * * * **
8477129 AAAGATTGACTTCTGTTCACGAGGAAATAAATGATTGTCACCTCTTCGCAAGGGAGTTAGGAATA
1 AAAGATTGACTTCTCTTCACGAGGAAATCAATGATTGACTCCTCTTCGTGAGGGAGTTAGGAATA
8477194 AC
66 AC
8477196 AAAGATTGACTTCTCTTCACGAGGA
1 AAAGATTGACTTCTCTTCACGAGGA
8477221 TGTCAAGTTA
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 138 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (67 bp):
AAAGATTGACTTCTCTTCACGAGGAAATCAATGATTGACTCCTCTTCGTGAGGGAGTTAGGAATA
AC
Found at i:8478514 original size:77 final size:77
Alignment explanation
Indices: 8478376--8478586 Score: 268
Period size: 76 Copynumber: 2.8 Consensus size: 77
8478366 CCGTTGTACA
* * * * *
8478376 AGGGGGGAATCGGTACCCCCT-TGGGGGGGATCGGTTCCCTCCAAGCATACTGGAATTCTCGGAG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
**
8478440 -CAAAACTGTTT
66 CCAAAACCATTT
8478451 AGGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTTCCCTCCGAGCATTCTGGAA-TCTCGG
1 A-GGGGGGAATCGGTTCCTCCTATGGGGGGAATCGG-TTCCCTCCGAGCATTCTGGAATTCTCGG
*
8478515 GGCCAAAACCATTT
64 AGCCAAAACCATTT
* * *
8478529 A-GGGGGAATCGGTTCCTCCTATGGGGGAGAATCGGTTCCCTCTGAGCAATCTGTAATT
1 AGGGGGGAATCGGTTCCTCCTATGGGGG-GAATCGGTTCCCTCCGAGCATTCTGGAATT
8478587 TTTGGCTTTG
Statistics
Matches: 119, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
75 1 0.01
76 62 0.52
77 27 0.23
78 29 0.24
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (77 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
CCAAAACCATTT
Found at i:8478967 original size:173 final size:173
Alignment explanation
Indices: 8478678--8479035 Score: 684
Period size: 173 Copynumber: 2.1 Consensus size: 173
8478668 GGATTAAAAT
8478678 GATTTTTGAAATATTTGGAGTAATGTTTTGATATTCGAATAGTTATCGAATATACTTAGAAAATC
1 GATTTTTGAAATATTTGGAGTAATGTTTTGATATTCGAATAGTTATCGAATATACTTAGAAAATC
8478743 ATTTGGAAAATCTTAAAATCCATTTAACTTAATTTGTTATATCGAAATATCAAAATGTTTCAACA
66 ATTTGGAAAATCTTAAAATCCATTTAACTTAATTTGTTATATCGAAATATCAAAATGTTTCAACA
8478808 ATCTCCCCCTTTTTGATATAACAAAACATTTTAGTAATTTTAA
131 ATCTCCCCCTTTTTGATATAACAAAACATTTTAGTAATTTTAA
8478851 GATTTTTGAAATATTTGGAGTAATGTTTTGATATTCGAATAGTTATATCGAATATACTTAGAAAA
1 GATTTTTGAAATATTTGGAGTAATGTTTTGATATTCGAATAG-T-TATCGAATATACTTAGAAAA
8478916 TCATTTGGAAAATCTTAAAATCCATTTAACTTAATTTG-T-TATCGAAATATCAAAATGTTTCAA
64 TCATTTGGAAAATCTTAAAATCCATTTAACTTAATTTGTTATATCGAAATATCAAAATGTTTCAA
8478979 CAATCTCCCCCTTTTTGATATAACAAAACATTTTAGTAATTTTAA
129 CAATCTCCCCCTTTTTGATATAACAAAACATTTTAGTAATTTTAA
8479024 GATTTTTGAAAT
1 GATTTTTGAAAT
8479036 CAAGTTTTGA
Statistics
Matches: 183, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
173 123 0.67
174 2 0.01
175 58 0.32
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (173 bp):
GATTTTTGAAATATTTGGAGTAATGTTTTGATATTCGAATAGTTATCGAATATACTTAGAAAATC
ATTTGGAAAATCTTAAAATCCATTTAACTTAATTTGTTATATCGAAATATCAAAATGTTTCAACA
ATCTCCCCCTTTTTGATATAACAAAACATTTTAGTAATTTTAA
Found at i:8479103 original size:29 final size:29
Alignment explanation
Indices: 8479070--8479129 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
8479060 CTTAAATCTT
8479070 CTTCAATTTATTATGTAAAACA-TTAACAC
1 CTTCAATTTATTATGT-AAACATTTAACAC
8479099 CTTCAATTTATTATGTAAACATTTAACAC
1 CTTCAATTTATTATGTAAACATTTAACAC
8479128 CT
1 CT
8479130 ATTCTTCCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.40
Consensus pattern (29 bp):
CTTCAATTTATTATGTAAACATTTAACAC
Found at i:8479397 original size:17 final size:15
Alignment explanation
Indices: 8479355--8479391 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 15
8479345 CACATTCATA
8479355 AATCCAAAATC---C
1 AATCCAAAATCAAAC
8479367 AATCCAAAATCAAAC
1 AATCCAAAATCAAAC
8479382 AATCCAAAAT
1 AATCCAAAAT
8479392 ATCAAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 11 0.50
15 11 0.50
ACGTcount: A:0.57, C:0.27, G:0.00, T:0.16
Consensus pattern (15 bp):
AATCCAAAATCAAAC
Found at i:8481343 original size:19 final size:20
Alignment explanation
Indices: 8481297--8481356 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 20
8481287 ATTCCCCTGT
8481297 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TC-AA
8481320 GGGGGAATCGGTTCCCTC-A
1 GGGGGAATCGGTTCCCTCAA
* *
8481339 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
8481357 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.22
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAA
Found at i:8486987 original size:77 final size:77
Alignment explanation
Indices: 8486876--8487064 Score: 262
Period size: 76 Copynumber: 2.5 Consensus size: 77
8486866 CCGTTGTACA
* * *
8486876 AGGGGGGAATCGGTACCCCCT-T-GGGGG-ATCGGTTCCCTCCAAGCATACTGGAATTCTCGGAG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCAAGCATACTGGAAATCTCGGAG
**
8486938 C-AAAACTGTTT
66 CAAAAACCATTT
* * *
8486949 AGGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGG
1 A-GGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCAAGCATACTGGAAATCTCGGA
8487014 GCAAAAACCATTT
65 GCAAAAACCATTT
8487027 A-GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCC
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCC
8487065 TCTGAGCAAT
Statistics
Matches: 103, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
73 1 0.01
74 18 0.17
75 1 0.01
76 42 0.41
77 32 0.31
78 9 0.09
ACGTcount: A:0.21, C:0.23, G:0.33, T:0.23
Consensus pattern (77 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCAAGCATACTGGAAATCTCGGAG
CAAAAACCATTT
Done.