Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10265705
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 49 of 49
Found at i:10191490 original size:14 final size:15
Alignment explanation
Indices: 10191475--10191524 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
10191465 TTTTCCTTTT
10191475 ATTTTTTTTTACTT-
1 ATTTTTTTTTACTTC
*
10191489 A-TTTTTATT-CTTC
1 ATTTTTTTTTACTTC
10191502 ATTTTTTATTTA-TTC
1 ATTTTTT-TTTACTTC
10191517 ATTTTTTT
1 ATTTTTTT
10191525 CCTCTGACAC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 3 0.10
13 8 0.27
14 7 0.23
15 12 0.40
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTTTTTTACTTC
Found at i:10200208 original size:17 final size:17
Alignment explanation
Indices: 10200186--10200219 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10200176 AAATTAAGAG
10200186 ATAATTTTTTAAATCTT
1 ATAATTTTTTAAATCTT
*
10200203 ATAATTTTTTTAATCTT
1 ATAATTTTTTAAATCTT
10200220 TTTAAATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTTTTAAATCTT
Found at i:10210687 original size:22 final size:22
Alignment explanation
Indices: 10210662--10210716 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
10210652 TTAGGAGTTA
* *
10210662 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
10210684 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
10210706 CGGGAGTTATA
1 CAGGAGTTATA
10210717 ACAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:10216264 original size:15 final size:15
Alignment explanation
Indices: 10216244--10216279 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
10216234 TCCGTCTCGT
10216244 CTCGGCACGGCACGG
1 CTCGGCACGGCACGG
*
10216259 CTCGGCATGGCACGG
1 CTCGGCACGGCACGG
10216274 CTCGGC
1 CTCGGC
10216280 TCATGGTCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.39, G:0.39, T:0.11
Consensus pattern (15 bp):
CTCGGCACGGCACGG
Found at i:10216467 original size:22 final size:22
Alignment explanation
Indices: 10216442--10216516 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
10216432 TCAGGAGTTA
** * *
10216442 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTACATGATATAATTT
*
10216464 CAGGGGTTACATGATATAATTT
1 CAGGAGTTACATGATATAATTT
*
10216486 CGGGAGTTACATGATATAATTT
1 CAGGAGTTACATGATATAATTT
*
10216508 CGGGAGTTA
1 CAGGAGTTA
10216517 TAACAGCTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.37
Consensus pattern (22 bp):
CAGGAGTTACATGATATAATTT
Found at i:10217435 original size:20 final size:18
Alignment explanation
Indices: 10217395--10217434 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
10217385 TGATTATTCA
10217395 ATTATATGGTGATTTTTT
1 ATTATATGGTGATTTTTT
10217413 ATTATATGGTGATTTTTT
1 ATTATATGGTGATTTTTT
10217431 -TTAT
1 ATTAT
10217435 TGAGTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (18 bp):
ATTATATGGTGATTTTTT
Found at i:10218504 original size:22 final size:22
Alignment explanation
Indices: 10218478--10218526 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
10218468 ATGTGAATCT
*
10218478 AAATATGTTATGTGCAAAACTA
1 AAATATGTTATGTACAAAACTA
10218500 AAATATGTTATGTACAAAACTA
1 AAATATGTTATGTACAAAACTA
10218522 AAATA
1 AAATA
10218527 GTTTCGATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (22 bp):
AAATATGTTATGTACAAAACTA
Found at i:10220553 original size:31 final size:31
Alignment explanation
Indices: 10220515--10220592 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
10220505 GGGTCGAGAG
10220515 TTTACCTATGTTCTTCGGGACATATGGACTA
1 TTTACCTATGTTCTTCGGGACATATGGACTA
* *
10220546 TTTACCTATATTCTTCGGGACATATGGACTG
1 TTTACCTATGTTCTTCGGGACATATGGACTA
* *
10220577 TTTACTTAGGTTCTTC
1 TTTACCTATGTTCTTC
10220593 AGAATCTATG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (31 bp):
TTTACCTATGTTCTTCGGGACATATGGACTA
Found at i:10221456 original size:14 final size:14
Alignment explanation
Indices: 10221437--10221466 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10221427 GGTACTGTCC
10221437 ACGGTACTGTTCAT
1 ACGGTACTGTTCAT
10221451 ACGGTACTGTTCAT
1 ACGGTACTGTTCAT
10221465 AC
1 AC
10221467 CGTATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (14 bp):
ACGGTACTGTTCAT
Found at i:10226940 original size:16 final size:16
Alignment explanation
Indices: 10226919--10226981 Score: 108
Period size: 16 Copynumber: 3.9 Consensus size: 16
10226909 TAATAAATAA
10226919 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10226935 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
* *
10226951 ACGAACATAAATGATC
1 ACGAACATAAACGAAC
10226967 ACGAACATAAACGAA
1 ACGAACATAAACGAA
10226982 TATAAACGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.56, C:0.22, G:0.13, T:0.10
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:10227750 original size:14 final size:14
Alignment explanation
Indices: 10227733--10227778 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
10227723 AATGAACATA
10227733 AACGAACATAATCG
1 AACGAACATAATCG
*
10227747 AACGAACATAA-CTA
1 AACGAACATAATC-G
*
10227761 AACGAATATAATCG
1 AACGAACATAATCG
10227775 AACG
1 AACG
10227779 TTCACGAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.52, C:0.20, G:0.13, T:0.15
Consensus pattern (14 bp):
AACGAACATAATCG
Found at i:10228148 original size:14 final size:15
Alignment explanation
Indices: 10228129--10228160 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
10228119 TCGTTAGGTC
10228129 TCTCTTTCTT-TCTT
1 TCTCTTTCTTCTCTT
10228143 TCTCTTTCTTCTCTT
1 TCTCTTTCTTCTCTT
10228158 TCT
1 TCT
10228161 TTTGATGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
TCTCTTTCTTCTCTT
Found at i:10230315 original size:25 final size:25
Alignment explanation
Indices: 10230287--10230337 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
10230277 GGAGAAGGAT
*
10230287 TATCTTTGAAACAGCACAAGGGAGA
1 TATCTTCGAAACAGCACAAGGGAGA
10230312 TATCTTCGAAACAGCACAAGGGAGA
1 TATCTTCGAAACAGCACAAGGGAGA
10230337 T
1 T
10230338 TTCATAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.20
Consensus pattern (25 bp):
TATCTTCGAAACAGCACAAGGGAGA
Found at i:10230645 original size:202 final size:202
Alignment explanation
Indices: 10230299--10230705 Score: 796
Period size: 202 Copynumber: 2.0 Consensus size: 202
10230289 TCTTTGAAAC
10230299 AGCACAAGGGAGATATCTTCGAAACAGCACAAGGGAGATTTCATAGTGGAAACCTATCTGCTTCT
1 AGCACAAGGGAGATATCTTCGAAACAGCACAAGGGAGATTTCATAGTGGAAACCTATCTGCTTCT
*
10230364 CTCAAGCATTTGTAGAATTAGGACTACTAGTAGTGACTTTTTATGATTTGTTTGCTAAAACTTTG
66 CTCAAGCATTTGTAGAATTAGGACTACTAGTAGTGACTTTTTATGAATTGTTTGCTAAAACTTTG
10230429 GTTCATGAACTAAGTGAGAACCAATGTGTGGGATGTATGTGCTTATCTCATTCTGAGAAGCCATT
131 GTTCATGAACTAAGTGAGAACCAATGTGTGGGATGTATGTGCTTATCTCATTCTGAGAAGCCATT
10230494 CTAAGAA
196 CTAAGAA
10230501 AGCACAAGGGAGATATCTTCGAAACAGCACAAGGGAGATTTCATAGTGGAAACCTATCTGCTTCT
1 AGCACAAGGGAGATATCTTCGAAACAGCACAAGGGAGATTTCATAGTGGAAACCTATCTGCTTCT
*
10230566 CTCAAGCATTTGTAGAATTAGGACTACTAGTAGTGTCTTTTTATGAATTGTTTGCTAAAACTTTG
66 CTCAAGCATTTGTAGAATTAGGACTACTAGTAGTGACTTTTTATGAATTGTTTGCTAAAACTTTG
10230631 GTTCATGAACTAAGTGAGAACCAATGTGTGGGATGTATGTGCTTATCTCATTCTGAGAAGCCATT
131 GTTCATGAACTAAGTGAGAACCAATGTGTGGGATGTATGTGCTTATCTCATTCTGAGAAGCCATT
10230696 CTAAGAA
196 CTAAGAA
10230703 AGC
1 AGC
10230706 TATGAACGAG
Statistics
Matches: 203, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
202 203 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (202 bp):
AGCACAAGGGAGATATCTTCGAAACAGCACAAGGGAGATTTCATAGTGGAAACCTATCTGCTTCT
CTCAAGCATTTGTAGAATTAGGACTACTAGTAGTGACTTTTTATGAATTGTTTGCTAAAACTTTG
GTTCATGAACTAAGTGAGAACCAATGTGTGGGATGTATGTGCTTATCTCATTCTGAGAAGCCATT
CTAAGAA
Found at i:10238405 original size:20 final size:20
Alignment explanation
Indices: 10238348--10238405 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
10238338 GCATGGGTAG
10238348 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
10238372 TGCATTGATGCACTGTAGAA
1 TGCATCGATGCACTGTAGAA
*
10238392 TGCATCGATTCACT
1 TGCATCGATGCACT
10238406 TCAAGGGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 16 0.52
22 1 0.03
23 2 0.06
24 12 0.39
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:10239225 original size:31 final size:31
Alignment explanation
Indices: 10239187--10239251 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
10239177 AGAGTCGAGG
*
10239187 GTTTACCTATGTCTTTCGAGACATATGGACA
1 GTTTACCTAGGTCTTTCGAGACATATGGACA
* * *
10239218 GTTTACCTAGGTTTTTCTAGACCTATGGACA
1 GTTTACCTAGGTCTTTCGAGACATATGGACA
10239249 GTT
1 GTT
10239252 GCCGAGGTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGACATATGGACA
Found at i:10239271 original size:30 final size:29
Alignment explanation
Indices: 10239210--10239305 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 29
10239200 TTTCGAGACA
*
10239210 TATGGACAGTTTACCTAGGTT-TTTCTAGACC
1 TATGGACAG-TTACC-AGGTTCTTTAT-GACC
*
10239241 TATGGACAGTTGCCGAGGTTCTTTATGACC
1 TATGGACAGTTACC-AGGTTCTTTATGACC
* * * * *
10239271 TCTGGATAGTTTCCAGGGTCTTTGTGACC
1 TATGGACAGTTACCAGGTTCTTTATGACC
*
10239300 TCTGGA
1 TATGGA
10239306 TAGGTCATTC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
29 19 0.34
30 24 0.43
31 13 0.23
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (29 bp):
TATGGACAGTTACCAGGTTCTTTATGACC
Found at i:10239293 original size:29 final size:30
Alignment explanation
Indices: 10239237--10239308 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
10239227 GGTTTTTCTA
* * *
10239237 GACCTATGGACAGTTGCCGAGGTTCTTTAT
1 GACCTCTGGATAGTTGCCGAGGGTCTTTAT
* *
10239267 GACCTCTGGATAGTTTCC-AGGGTCTTTGT
1 GACCTCTGGATAGTTGCCGAGGGTCTTTAT
10239296 GACCTCTGGATAG
1 GACCTCTGGATAG
10239309 GTCATTCGGG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 22 0.59
30 15 0.41
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (30 bp):
GACCTCTGGATAGTTGCCGAGGGTCTTTAT
Found at i:10240152 original size:23 final size:23
Alignment explanation
Indices: 10240126--10240171 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10240116 CACCACAGCT
*
10240126 CGTATAATTGCACCGA-AGTGCCA
1 CGTAGAATTGCACC-ATAGTGCCA
10240149 CGTAGAATTGCACCATAGTGCCA
1 CGTAGAATTGCACCATAGTGCCA
10240172 TATAATAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.05
23 20 0.95
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCATAGTGCCA
Found at i:10240388 original size:149 final size:149
Alignment explanation
Indices: 10240149--10240452 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
10240139 CGAAGTGCCA
10240149 CGTAGAATTGCACCATAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
1 CGTAGAATTGCACCATAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
10240214 CATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
*
10240279 TATATATCCTGAAGGACCG
131 TATATATCCCGAAGGACCG
10240298 CGTAGAATTGCACCATAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
1 CGTAGAATTGCACCATAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
10240363 CATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
10240428 TATATATCCCGAAGGACCG
131 TATATATCCCGAAGGACCG
10240447 CGTAGA
1 CGTAGA
10240453 CCCTCTACCC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCATAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
CATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATA
TATATATCCCGAAGGACCG
Found at i:10241014 original size:63 final size:62
Alignment explanation
Indices: 10240908--10241066 Score: 205
Period size: 63 Copynumber: 2.5 Consensus size: 62
10240898 TAATGGAGGC
* * * *
10240908 ATGCATCGATGCACTTCTGATGCATCGATGCACTGAGAGCATTCGATGTTCAT-TTTATTAGA-A
1 ATGCATCGATGCACTTCTTATGCATCGATGCACTGACAACATTCGATGTT--TGTTT-TTAAATA
*
10240971 ATGCATCGATGCACTCCTTATGCATCGATGCACTGACAACATTCGATGTTTGTTTTTAAATTA
1 ATGCATCGATGCACTTCTTATGCATCGATGCACTGACAACATTCGATGTTTGTTTTTAAA-TA
* *
10241034 ATACATCGATGCACTTCATATGCATCGATGCAC
1 ATGCATCGATGCACTTCTTATGCATCGATGCAC
10241067 CTTCAACAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
61 5 0.06
62 3 0.04
63 77 0.91
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (62 bp):
ATGCATCGATGCACTTCTTATGCATCGATGCACTGACAACATTCGATGTTTGTTTTTAAATA
Found at i:10246270 original size:20 final size:21
Alignment explanation
Indices: 10246237--10246283 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
10246227 AAAAATATCA
10246237 AATATTTAATATATAATATAT
1 AATATTTAATATATAATATAT
* *
10246258 AATATTT-ATATATTATTTAT
1 AATATTTAATATATAATATAT
10246278 AA-ATTT
1 AATATTT
10246284 CAGTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 13 0.54
21 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
AATATTTAATATATAATATAT
Found at i:10247257 original size:14 final size:15
Alignment explanation
Indices: 10247235--10247281 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
10247225 TATAAGGTAA
*
10247235 TTTTGTTATAATT-T
1 TTTTATTATAATTAT
*
10247249 TTTTATTATACTTAT
1 TTTTATTATAATTAT
*
10247264 TATTTATTATGATTAT
1 T-TTTATTATAATTAT
10247280 TT
1 TT
10247282 GAAAAACTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.41
15 3 0.11
16 13 0.48
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (15 bp):
TTTTATTATAATTAT
Found at i:10248343 original size:22 final size:21
Alignment explanation
Indices: 10248301--10248352 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
10248291 AACATACTAA
*
10248301 AATTATAATATTAAATTATTTT
1 AATTATAATATTAAATCA-TTT
* *
10248323 AATTTTAATATTATATCATTT
1 AATTATAATATTAAATCATTT
10248344 AATTA-AATA
1 AATTATAATA
10248353 GATTAATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 4 0.15
21 7 0.27
22 15 0.58
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
AATTATAATATTAAATCATTT
Found at i:10261018 original size:19 final size:19
Alignment explanation
Indices: 10260991--10261038 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
10260981 TTGATATTTG
*
10260991 AATTGAAAAGATTATAAGT
1 AATTCAAAAGATTATAAGT
*
10261010 AATTTAAAAAGATTATAAGT
1 AA-TTCAAAAGATTATAAGT
10261030 AATTCAAAA
1 AATTCAAAA
10261039 AGATAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.31
Consensus pattern (19 bp):
AATTCAAAAGATTATAAGT
Found at i:10261021 original size:20 final size:20
Alignment explanation
Indices: 10260996--10261042 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
10260986 ATTTGAATTG
*
10260996 AAAAGATTATAAGTAATTTA
1 AAAAGATTATAAGTAATTCA
10261016 AAAAGATTATAAGTAATTCA
1 AAAAGATTATAAGTAATTCA
10261036 AAAAGAT
1 AAAAGAT
10261043 AATATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (20 bp):
AAAAGATTATAAGTAATTCA
Done.