genome.fa.s8244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008244.1 Hibiscus syriacus cultivar Beakdansim tig00110894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84438

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25373--25419	8	5.8	8	80	14	60	27	0	0	72	0.85
25373--25417	3	15.3	3	82	17	51	28	0	0	71	0.87
25472--25553	33	2.5	33	92	4	130	37	21	13	26	1.91
26082--26133	7	7.9	7	80	20	67	28	0	0	71	0.87
26082--26133	3	16.0	3	81	18	52	28	0	0	71	0.87
28789--28973	96	1.9	94	90	2	289	32	18	19	29	1.96
30375--30575	110	1.8	110	93	0	348	35	24	18	20	1.95
31138--31205	21	3.5	21	71	24	76	25	22	11	41	1.87
31143--31224	37	2.2	36	91	2	128	28	19	13	39	1.89
31277--31392	33	3.6	33	79	11	141	40	18	8	31	1.81
31388--31734	83	4.2	83	85	1	448	31	23	19	25	1.98
31387--31734	166	2.1	165	87	2	502	31	24	19	25	1.98
32657--32717	23	2.7	23	86	0	95	27	24	27	19	1.99
35374--35433	3	20.3	3	83	16	65	30	0	0	70	0.88
35487--35553	33	2.0	33	91	5	109	38	23	11	25	1.89
35495--35569	33	2.3	34	88	9	111	37	21	14	26	1.92
36100--36155	7	7.9	7	81	18	71	28	0	0	71	0.86
36100--36155	3	17.0	3	82	17	51	28	0	0	71	0.86
36101--36152	4	14.2	4	81	18	53	26	0	0	73	0.84
36105--36169	33	2.0	33	87	6	96	23	3	0	73	0.97
37784--37844	16	3.9	16	80	4	79	16	16	18	49	1.80
48471--48590	35	3.3	36	88	5	172	42	20	5	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48522--48582	21	3.2	21	63	29	55	40	21	4	32	1.74
52656--52694	16	2.4	16	91	4	60	35	23	7	33	1.83
53097--53216	35	3.3	36	85	9	147	43	19	5	31	1.74
56577--56635	3	18.7	3	86	10	82	33	1	0	64	1.04
64791--64864	38	2.0	38	84	7	98	41	1	1	55	1.17
74608--74649	18	2.5	17	81	11	50	40	9	28	21	1.84
76641--76692	20	2.6	20	96	0	95	38	26	13	21	1.90
76683--76805	21	5.7	21	67	15	63	35	21	21	21	1.96
76694--76743	25	2.0	25	88	0	73	32	18	28	22	1.97
76773--76966	20	9.6	20	76	8	76	35	25	19	19	1.95
76769--76966	40	5.0	39	81	4	200	35	26	19	19	1.95
76773--76966	60	3.2	60	82	0	244	35	25	19	19	1.95
77346--77416	33	2.2	33	92	0	115	11	22	18	47	1.80
77537--77591	14	3.6	14	73	21	56	41	23	25	9	1.83
77537--77607	33	2.2	33	94	0	124	43	25	22	8	1.81
77603--77700	19	5.7	19	70	22	81	10	24	22	42	1.84
77625--77714	14	5.7	14	74	23	81	8	25	23	42	1.83
77608--77722	33	3.5	33	95	0	212	9	24	20	45	1.81
78498--78964	185	2.5	186	99	0	918	21	12	19	46	1.83
78498--78964	93	5.0	93	99	0	918	21	12	19	46	1.83
78996--79124	19	7.3	19	75	17	125	45	28	17	8	1.77
79032--79124	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78996--79124	52	2.5	52	74	14	140	45	28	17	8	1.77
79120--79254	19	7.6	19	75	16	128	11	19	23	45	1.82
79142--79198	14	3.7	14	77	20	60	10	21	22	45	1.82
79125--79217	33	2.8	33	95	0	168	10	20	21	47	1.80
81170--81205	14	2.6	14	95	0	63	33	0	22	44	1.53
81312--81413	19	5.6	19	84	13	151	44	17	23	14	1.86
81420--81741	33	9.5	33	75	14	262	13	20	18	46	1.83
81442--81741	19	17.4	19	76	21	322	13	20	18	47	1.83
81428--81515	14	5.6	14	73	23	68	12	20	19	47	1.81
81442--81713	52	5.2	52	87	10	334	13	21	17	47	1.83
84016--84040	12	2.1	12	100	0	50	0	28	0	72	0.86
84215--84261	24	2.0	24	87	8	69	38	21	14	25	1.92

Tables:   1

The End!