Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008245.1 Hibiscus syriacus cultivar Beakdansim tig00110895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6601124
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 16 of 33
Found at i:3136145 original size:29 final size:29
Alignment explanation
Indices: 3136095--3136155 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
3136085 TATGCCAGTT
* * * *
3136095 AGATGAACTGTTAAATAATGTTGAGTGAA
1 AGATGAAATGTCAAACAATGTTGAGTAAA
*
3136124 AGATGAAATGTCAAACACTGTTGAGTAAA
1 AGATGAAATGTCAAACAATGTTGAGTAAA
3136153 AGA
1 AGA
3136156 ATAATGGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (29 bp):
AGATGAAATGTCAAACAATGTTGAGTAAA
Found at i:3142814 original size:18 final size:19
Alignment explanation
Indices: 3142791--3142826 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
3142781 GGTGGAAATA
*
3142791 TATTTTGT-CACGGTATTT
1 TATTTTGTAAACGGTATTT
3142809 TATTTTGTAAACGGTATT
1 TATTTTGTAAACGGTATT
3142827 GTGTTATGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (19 bp):
TATTTTGTAAACGGTATTT
Found at i:3146287 original size:83 final size:82
Alignment explanation
Indices: 3146171--3146361 Score: 217
Period size: 83 Copynumber: 2.3 Consensus size: 82
3146161 AAGCGCCACA
* * * *
3146171 ATAGATGAACCTATTACGGCGTTTGTATAAAAACGCCGCTAACTTACTACA-ATG-TTGCGTCGT
1 ATAGATGAACCTATTACGACATTTGTACAAAAACGCCGCTAACATACTA-ATATGTTTG-GT-GT
*
3146234 TTATTG-AAAAAATGTCACT
63 TTATTGAAAAAAATGTCAAT
* * *
3146253 ATAGATGAACCTTATTACGACATTTGTACAAAAACGCCGCTGACATATTAATTTGTTTTGGTGTT
1 ATAGATGAACC-TATTACGACATTTGTACAAAAACGCCGCTAACATACTAATATG-TTTGGTGTT
*
3146318 TTTTGAAAAAAATGTCAAT
64 TATTGAAAAAAATGTCAAT
*
3146337 ATAGATTAACCCTATTACGACATTT
1 ATAGATGAA-CCTATTACGACATTT
3146362 TTGTAAAAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
82 12 0.13
83 41 0.44
84 35 0.38
85 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (82 bp):
ATAGATGAACCTATTACGACATTTGTACAAAAACGCCGCTAACATACTAATATGTTTGGTGTTTA
TTGAAAAAAATGTCAAT
Found at i:3146453 original size:82 final size:82
Alignment explanation
Indices: 3146365--3146617 Score: 237
Period size: 82 Copynumber: 3.1 Consensus size: 82
3146355 GACATTTTTG
3146365 TAAAAACACTGCTATAGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACGCCACTAAAGATGAAC
1 TAAAAACACTGCTATAGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACGCCACTAAAGATGAAC
3146430 CTATTGCAGCGTTTGTA
66 CTATTGCAGCGTTTGTA
* * * * * * ** * * * * * * *
3146447 TTAAAACACCGCGAAAGTACTACCAT-ATTACAG-CGTTTGTTGA-AAAATGTCACTATAA-ATT
1 TAAAAACACTGCTATAGTACT-TCTTCGGTGC-GTTGTTTGTTTAGGAAACGCCACTA-AAGATG
* * * *
3146508 AACCCTATTAC-GACATTTTTG
63 AA-CCTATTGCAG-CGTTTGTA
*
3146529 TAAAAACACTGCTATAGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACACCACTAAAGATGAAC
1 TAAAAACACTGCTATAGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACGCCACTAAAGATGAAC
*
3146594 TTATTGCAGCGTTTGTA
66 CTATTGCAGCGTTTGTA
3146611 TAAAAAC
1 TAAAAAC
3146618 GTCGCAAAAG
Statistics
Matches: 121, Mismatches: 40, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
81 17 0.14
82 88 0.73
83 16 0.13
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (82 bp):
TAAAAACACTGCTATAGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACGCCACTAAAGATGAAC
CTATTGCAGCGTTTGTA
Found at i:3146520 original size:164 final size:165
Alignment explanation
Indices: 3146315--3146706 Score: 565
Period size: 164 Copynumber: 2.4 Consensus size: 165
3146305 TTGTTTTGGT
* *
3146315 GTTTTTTGAAAAAAATGTCAATATAGATTAACCCTATTACGACATTTTTGTAAAAACACTGCTAT
1 GTTTATTG-AAAAAATGTCACTATAGATTAACCCTATTACGACATTTTTGTAAAAACACTGCTAT
*
3146380 AGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACGCCACTAAAGATGAACCTATTGCAGCGTTTG
65 AGTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACACCACTAAAGATGAACCTATTGCAGCGTTTG
* *
3146445 TATTAAAACACCGCGAAAGTACTACCATATTACAGC
130 TATAAAAACACCGCAAAAGTACTACCATATTACAGC
* *
3146481 GTTTGTTG-AAAAATGTCACTATAAATTAACCCTATTACGACATTTTTGTAAAAACACTGCTATA
1 GTTTATTGAAAAAATGTCACTATAGATTAACCCTATTACGACATTTTTGTAAAAACACTGCTATA
*
3146545 GTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACACCACTAAAGATGAACTTATTGCAGCGTTTGT
66 GTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACACCACTAAAGATGAACCTATTGCAGCGTTTGT
** * *** *
3146610 ATAAAAACGTCGCAAAAGTACTACCATGTTGTGGT
131 ATAAAAACACCGCAAAAGTACTACCATATTACAGC
*** * *
3146645 GTTTATTGAAAAAACACCACTATAGATTAACCCTAATACGACA--TTTGCTAAAAACACCGCTA
1 GTTTATTGAAAAAATGTCACTATAGATTAACCCTATTACGACATTTTTG-TAAAAACACTGCTA
3146707 AAGTTACCAT
Statistics
Matches: 203, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
163 4 0.02
164 163 0.80
165 29 0.14
166 7 0.03
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (165 bp):
GTTTATTGAAAAAATGTCACTATAGATTAACCCTATTACGACATTTTTGTAAAAACACTGCTATA
GTACTTCTTCGGTGCGTTGTTTGTTTAGGAAACACCACTAAAGATGAACCTATTGCAGCGTTTGT
ATAAAAACACCGCAAAAGTACTACCATATTACAGC
Found at i:3150076 original size:21 final size:21
Alignment explanation
Indices: 3150052--3150093 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
3150042 ATTTGATATA
3150052 TCTTATTCCATTTC-TTTCCTT
1 TCTTATTCC-TTTCTTTTCCTT
* *
3150073 TCTTCTTTCTTTCTTTTCCTT
1 TCTTATTCCTTTCTTTTCCTT
3150094 GCCTTACTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.67
Consensus pattern (21 bp):
TCTTATTCCTTTCTTTTCCTT
Found at i:3157168 original size:3 final size:3
Alignment explanation
Indices: 3157160--3157201 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
3157150 AATATTTTTA
3157160 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3157202 CATTGCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:3158696 original size:29 final size:26
Alignment explanation
Indices: 3158625--3158694 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 26
3158615 AATCTATCTT
3158625 TTTTATTTATTTTAATTTAGCCATGCAA
1 TTTTATTTATTTTAATTTAGCCATG--A
3158653 TTTTAGTTTATTTTAATTTAGTACACATG-
1 TTTTA-TTTATTTTAATTTAG--C-CATGA
3158682 TTTTATTTATTTT
1 TTTTATTTATTTT
3158695 TATTCTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
28 13 0.34
29 20 0.53
31 1 0.03
32 4 0.11
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (26 bp):
TTTTATTTATTTTAATTTAGCCATGA
Found at i:3159628 original size:18 final size:17
Alignment explanation
Indices: 3159607--3159654 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
3159597 GTTGTTTTTA
**
3159607 AAATAAAAAATATGAATT
1 AAATAAAAAA-AAAAATT
3159625 AAATAATAAAAAAAAATT
1 AAATAA-AAAAAAAAATT
3159643 AAATAAACAAAA
1 AAATAAA-AAAA
3159655 TTAAAGAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 21 0.81
19 4 0.15
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
AAATAAAAAAAAAAATT
Found at i:3160333 original size:19 final size:19
Alignment explanation
Indices: 3160277--3160339 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
3160267 CAATTTAAAC
**
3160277 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
3160297 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
3160317 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
3160336 TAAA
1 TAAA
3160340 CTAAAATACC
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 9 0.27
21 5 0.15
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:3167572 original size:18 final size:18
Alignment explanation
Indices: 3167551--3167598 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
3167541 GTTGTTTTTA
3167551 AAATAAAAAATAAGAATT
1 AAATAAAAAATAAGAATT
*
3167569 AAATAATAAAA-AATAATT
1 AAATAA-AAAATAAGAATT
3167587 AAATAAACAAAT
1 AAATAAA-AAAT
3167599 TAAAGAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 21 0.81
19 4 0.15
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
AAATAAAAAATAAGAATT
Found at i:3168313 original size:65 final size:65
Alignment explanation
Indices: 3168186--3168313 Score: 179
Period size: 65 Copynumber: 2.0 Consensus size: 65
3168176 TAAAACATAT
*
3168186 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTATAATATTC
1 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTAAAATATTC
* * * *
3168251 TAAATCCTATTTAAAATAC-TAAAACCTGTTTAAACTAAAATACCTAAAACAAATA-TAAAATAT
1 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATAACTAAAA-AAATATTAAAATAT
3168314 AAAAATAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 5 0.09
65 46 0.82
66 5 0.09
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.31
Consensus pattern (65 bp):
TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTAAAATATTC
Found at i:3168331 original size:65 final size:65
Alignment explanation
Indices: 3168197--3168332 Score: 143
Period size: 65 Copynumber: 2.1 Consensus size: 65
3168187 AAATCCTAAT
* ** ** *
3168197 TAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTATAATATTCTAAATCCTATT
1 TAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTAAAATATTAAAAATAATATC
* * *
3168262 TAAAATAC-TAAAACCTGTTTAAACTAAAATACCTAAAACAAATA-TAAAATA-TAAAAATAATA
1 TAAAACACTTAAAA-CTATTTAAACTAAAATAACTAAAA-AAATATTAAAATATTAAAAATAATA
3168324 TCC
64 T-C
3168327 TAAAAC
1 TAAAAC
3168333 TTAATTAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
64 13 0.22
65 40 0.69
66 5 0.09
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.29
Consensus pattern (65 bp):
TAAAACACTTAAAACTATTTAAACTAAAATAACTAAAAAAATATTAAAATATTAAAAATAATATC
Found at i:3168833 original size:131 final size:131
Alignment explanation
Indices: 3168599--3168907 Score: 411
Period size: 131 Copynumber: 2.4 Consensus size: 131
3168589 TCAAGGCATC
* * * * * *
3168599 AGAGGTCATTTATTCTCAATTTGAAATAATTCGATATTACTGTTTTCTCTCGAATTAATATTGAT
1 AGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCGAATTAATATTGAA
*** * * *
3168664 TTTTAAGATGGAATAGTGACATCTCTTCATTTCGATTGGAGCAATATATGACTGCTTTAAGGTAG
66 TTTTAAGACAAAATAGTGACATATCTTCATTTCGATTGGAGCAATAAATGACTACTTTAAGGTAG
3168729 G
131 G
* *
3168730 AGAGGTCATTTATTCTCGATTGGAAATCATTAGATATTACCGTTTTCACTCGAATTGATATTGAA
1 AGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCGAATTAATATTGAA
* * * * *
3168795 TTTTAAGACAAAATAGTGATATATCTTCATTTCGATTGGAGTAATAAATGATTATTTTAAGGTAT
66 TTTTAAGACAAAATAGTGACATATCTTCATTTCGATTGGAGCAATAAATGACTACTTTAAGGTAG
3168860 G
131 G
** * *
3168861 AGATATCATTTATTCTCGATTGGAAATAATTAGATATCATCGTTTTC
1 AGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTC
3168908 TCTCTTAAAA
Statistics
Matches: 154, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
131 154 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (131 bp):
AGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTACCGTTTTCACTCGAATTAATATTGAA
TTTTAAGACAAAATAGTGACATATCTTCATTTCGATTGGAGCAATAAATGACTACTTTAAGGTAG
G
Found at i:3170568 original size:19 final size:19
Alignment explanation
Indices: 3170537--3170606 Score: 83
Period size: 19 Copynumber: 3.7 Consensus size: 19
3170527 AGTCGGGTCG
3170537 GGTT-AGACCGGTCAAACC
1 GGTTCAGACCGGTCAAACC
*
3170555 GGTTCAGACTGGTCAAACC
1 GGTTCAGACCGGTCAAACC
3170574 GGTTC-GAACCGGTCGAAACC
1 GGTTCAG-ACCGGTC-AAACC
3170594 GG-TCAGAACCGGT
1 GGTTCAG-ACCGGT
3170607 TGAAAACTGG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.11
19 26 0.57
20 15 0.33
ACGTcount: A:0.26, C:0.27, G:0.30, T:0.17
Consensus pattern (19 bp):
GGTTCAGACCGGTCAAACC
Found at i:3170611 original size:20 final size:21
Alignment explanation
Indices: 3170569--3170627 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
3170559 CAGACTGGTC
*
3170569 AAACCGGTTC-GAACCGGTCG-
1 AAACCGG-TCAGAACCGGTTGA
3170589 AAACCGGTCAGAACCGGTTGA
1 AAACCGGTCAGAACCGGTTGA
*
3170610 AAACTGGTCA-AACCGGTT
1 AAACCGGTCAGAACCGGTT
3170628 TCCAGCCCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 24 0.69
21 9 0.26
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (21 bp):
AAACCGGTCAGAACCGGTTGA
Found at i:3177743 original size:7 final size:7
Alignment explanation
Indices: 3177731--3177780 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
3177721 GTCAAAGGAA
3177731 GTCAACG
1 GTCAACG
3177738 GTCAACG
1 GTCAACG
3177745 GTC-ACG
1 GTCAACG
3177751 GTCAACG
1 GTCAACG
*
3177758 GTCAATG
1 GTCAACG
3177765 GTCAACG
1 GTCAACG
*
3177772 GTCATCG
1 GTCAACG
3177779 GT
1 GT
3177781 TGGGTCGGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
6 6 0.15
7 33 0.85
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (7 bp):
GTCAACG
Found at i:3177830 original size:10 final size:9
Alignment explanation
Indices: 3177802--3177860 Score: 64
Period size: 9 Copynumber: 6.1 Consensus size: 9
3177792 AGTCGGGTCG
*
3177802 GGTCAGACC
1 GGTCAAACC
3177811 GGTCAAACC
1 GGTCAAACC
3177820 GGTCGAAACC
1 GGTC-AAACC
3177830 GGTCAGAACC
1 GGTCA-AACC
*
3177840 GGTTGAAAACC
1 GG-T-CAAACC
3177851 GGTCAAACC
1 GGTCAAACC
3177860 G
1 G
3177861 ATTTCCAACC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 19 0.44
10 16 0.37
11 7 0.16
12 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12
Consensus pattern (9 bp):
GGTCAAACC
Found at i:3180084 original size:23 final size:23
Alignment explanation
Indices: 3180058--3180119 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
3180048 TGTTTTATAG
*
3180058 TCATCACATGGAAGTATTTATTA
1 TCATCACATGGAAGTATTAATTA
3180081 TCATCACATGGAAGTATTAATTA
1 TCATCACATGGAAGTATTAATTA
*
3180104 TCATCACATTGAAGTA
1 TCATCACATGGAAGTA
3180120 CTGACGTGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (23 bp):
TCATCACATGGAAGTATTAATTA
Found at i:3182335 original size:14 final size:14
Alignment explanation
Indices: 3182313--3182351 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
3182303 CTGTCTATAA
*
3182313 GCAGAGATTT-TTAC
1 GCAGGGATTTATT-C
3182327 GCAGGGATTTATTC
1 GCAGGGATTTATTC
3182341 GCAGGGATTTA
1 GCAGGGATTTA
3182352 CTAACCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 21 0.91
15 2 0.09
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (14 bp):
GCAGGGATTTATTC
Found at i:3183470 original size:37 final size:37
Alignment explanation
Indices: 3183394--3183470 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
3183384 TTTTTATATT
*
3183394 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
3183431 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
3183468 TTT
1 TTT
3183471 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:3185497 original size:2 final size:2
Alignment explanation
Indices: 3185490--3185518 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3185480 TCTAACCATA
3185490 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3185519 CACACACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3186048 original size:158 final size:159
Alignment explanation
Indices: 3185784--3186126 Score: 426
Period size: 158 Copynumber: 2.2 Consensus size: 159
3185774 GTTACATAGT
* * * * *
3185784 TATTCTATTGTGGTATATGAGCATGTGGTTCATATTTGATACAAAAAGTGACTTAAAATAAATCA
1 TATTCTATTATGGTTTAGGAGCATGTGGTTCAAATTTAATACAAAAAGTGACTTAAAATAAATCA
** * * *
3185849 CAAATTGAAGGGATAATGAGATTATTAAAAAATGAATGACTAAATTGAAAAATAAAAAAATTCTT
66 CAAATTGAAGAAATAAGGAGATTATTAAAAAATGAAAGACTAAATTAAAAAATAAAAAAATTCTT
* *
3185914 ATCAAAAAGAGGAATTGAAAGTACAA-ATG
131 ATCAAAAACAGAAATTGAAAGTA-AACATG
3185943 TATTCTATTATGGTTTAGGAGCATGT-GTCTCAAATTTAATA-AAAAA-TAGACTTAAAATAAAT
1 TATTCTATTATGGTTTAGGAGCATGTGGT-TCAAATTTAATACAAAAAGT-GACTTAAAATAAAT
* * ** * *
3186005 GATATTTTGAAGAAATAAGGAGATTA-TAAAAAATTGAAAGACTAAATTAAAAAATATAAAATTT
64 CACAAATTGAAGAAATAAGGAGATTATTAAAAAA-TGAAAGACTAAATTAAAAAATAAAAAAATT
* *
3186069 GTTATCAAAAACTGAAATTGAAAGTAAACATG
128 CTTATCAAAAACAGAAATTGAAAGTAAACATG
*
3186101 TATTCTACTATGGTTTAGGAGCATGT
1 TATTCTATTATGGTTTAGGAGCATGT
3186127 ATTCTACTAT
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
157 10 0.06
158 116 0.73
159 33 0.21
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.31
Consensus pattern (159 bp):
TATTCTATTATGGTTTAGGAGCATGTGGTTCAAATTTAATACAAAAAGTGACTTAAAATAAATCA
CAAATTGAAGAAATAAGGAGATTATTAAAAAATGAAAGACTAAATTAAAAAATAAAAAAATTCTT
ATCAAAAACAGAAATTGAAAGTAAACATG
Found at i:3186155 original size:25 final size:25
Alignment explanation
Indices: 3186097--3186144 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
3186087 TGAAAGTAAA
3186097 CATGTATTCTACTATGGTTTAGGAG
1 CATGTATTCTACTATGGTTTAGGAG
3186122 CATGTATTCTACTATGGTTTAGG
1 CATGTATTCTACTATGGTTTAGG
3186145 TTATGTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (25 bp):
CATGTATTCTACTATGGTTTAGGAG
Found at i:3186434 original size:2 final size:2
Alignment explanation
Indices: 3186427--3186454 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3186417 CTAAAATAAG
3186427 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3186455 CAAATAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3186900 original size:94 final size:89
Alignment explanation
Indices: 3186786--3186956 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 89
3186776 GATTCTCTTG
*
3186786 TCTTCTCCTTTGTTCAGTAAGAATATTTACTCCCCCTACCTGGTTT-TTGAGCTTTTTCC-TTTT
1 TCTTCTCCTTTGTTAAGTAAGAA-ATTT-CT----CTACCT-GTTTCTTGAGC-TTTTCCTTTTT
3186849 TATAAGAGAAAAA-AGGTTCATCAAAAAAAATT
58 TATAAGA-AAAAATAGGTTCATCAAAAAAAATT
*
3186881 TCTTC-CCTTTGTTAAGTAAGAACTTTCTCTACCTGTTTCTTGAGCTTTTCCTTTTTTTATAAGA
1 TCTTCTCCTTTGTTAAGTAAGAAATTTCTCTACCTGTTTCTTGAGCTTTTCC-TTTTTTATAAGA
3186945 AAAAATAGGTTC
65 AAAAATAGGTTC
3186957 GATGATGAGA
Statistics
Matches: 70, Mismatches: 2, Indels: 14
0.81 0.02 0.16
Matches are distributed among these distances:
87 10 0.14
88 17 0.24
89 17 0.24
92 2 0.03
93 3 0.04
94 16 0.23
95 5 0.07
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.43
Consensus pattern (89 bp):
TCTTCTCCTTTGTTAAGTAAGAAATTTCTCTACCTGTTTCTTGAGCTTTTCCTTTTTTATAAGAA
AAAATAGGTTCATCAAAAAAAATT
Found at i:3193209 original size:6 final size:7
Alignment explanation
Indices: 3193192--3193222 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
3193182 GGTATCCGAT
3193192 TTTTTTA
1 TTTTTTA
3193199 TTTTTTA
1 TTTTTTA
3193206 TTTTTTA
1 TTTTTTA
*
3193213 TTTTCTA
1 TTTTTTA
3193220 TTT
1 TTT
3193223 ATAATTCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTA
Found at i:3193328 original size:39 final size:39
Alignment explanation
Indices: 3193227--3193340 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
3193217 CTATTTATAA
* * * *
3193227 TTCTCAAACTATTTCATCCAAACATTCTAAATTTTCTAAT
1 TTCTTAAATTATTTCATCCTAACATTCTAAATTAT-TAAT
* ** *
3193267 TTCTTAAGTTATTT-ATTGTAACATTTTAAATTATTAAT
1 TTCTTAAATTATTTCATCCTAACATTCTAAATTATTAAT
* *
3193305 TTCTTAAATTATTTCACCCTAACAATCTAAATTATT
1 TTCTTAAATTATTTCATCCTAACATTCTAAATTATT
3193341 TCTTAAATTA
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
38 17 0.29
39 31 0.53
40 11 0.19
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (39 bp):
TTCTTAAATTATTTCATCCTAACATTCTAAATTATTAAT
Found at i:3193416 original size:16 final size:17
Alignment explanation
Indices: 3193395--3193426 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
3193385 ATATTTCTTT
3193395 AATTTTA-CTTTTAATA
1 AATTTTATCTTTTAATA
3193411 AATTTTATCTTTTAAT
1 AATTTTATCTTTTAAT
3193427 TATGTAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTTATCTTTTAATA
Found at i:3194304 original size:18 final size:19
Alignment explanation
Indices: 3194288--3194324 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3194278 ATAATATATG
3194288 GTTTTGAAAATATATATAA
1 GTTTTGAAAATATATATAA
*
3194307 TTTTTGAAAATATATATA
1 GTTTTGAAAATATATATA
3194325 TAATATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (19 bp):
GTTTTGAAAATATATATAA
Found at i:3194346 original size:46 final size:46
Alignment explanation
Indices: 3194295--3194434 Score: 165
Period size: 46 Copynumber: 3.0 Consensus size: 46
3194285 ATGGTTTTGA
3194295 AAATATATATAATTTTTGAAAATATATATATAATATTGAAAACATAT
1 AAATATATATAATTTTTGAAAATATAT-TATAATATTGAAAACATAT
** * * **
3194342 -AATATATATACCTTTTGAAAATATTTTTTTAATAAAGAAAACATAT
1 AAATATATATAATTTTTGAAAATA-TATTATAATATTGAAAACATAT
* *
3194388 ACAATATATATAATTTTTGAAAATATATTATAGTTTTTGAAAACATA
1 A-AATATATATAATTTTTGAAAATATATTATA-ATATTGAAAACATA
3194435 ATTTTTGAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
46 37 0.49
47 7 0.09
48 31 0.41
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.41
Consensus pattern (46 bp):
AAATATATATAATTTTTGAAAATATATTATAATATTGAAAACATAT
Found at i:3194350 original size:20 final size:20
Alignment explanation
Indices: 3194297--3194347 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
3194287 GGTTTTGAAA
* *
3194297 ATATATATAATTTTTGAAAAT
1 ATATATATAA-TATTGAAAAC
3194318 ATATATATAATATTGAAAAC
1 ATATATATAATATTGAAAAC
3194338 ATATAATATA
1 ATAT-ATATA
3194348 TATACCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (20 bp):
ATATATATAATATTGAAAAC
Found at i:3194424 original size:20 final size:19
Alignment explanation
Indices: 3194390--3194469 Score: 87
Period size: 20 Copynumber: 4.3 Consensus size: 19
3194380 AAACATATAC
3194390 AATATATATAATTTTTGAA
1 AATATATATAATTTTTGAA
*
3194409 AATATATTATAGTTTTTG--
1 AATATA-TATAATTTTTGAA
*
3194427 AA-A-ACATAATTTTTGAA
1 AATATATATAATTTTTGAA
*
3194444 AACATATTATAATTTTTGAA
1 AATATA-TATAATTTTTGAA
3194464 AATATA
1 AATATA
3194470 ATGTATGTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
15 9 0.18
16 1 0.02
17 3 0.06
18 3 0.06
19 7 0.14
20 27 0.54
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (19 bp):
AATATATATAATTTTTGAA
Found at i:3194436 original size:35 final size:35
Alignment explanation
Indices: 3194397--3194471 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
3194387 TACAATATAT
* *
3194397 ATAATTTTTGAAAATATATTATAGTTTTTGAAAAC
1 ATAATTTTTGAAAACATATTATAATTTTTGAAAAC
*
3194432 ATAATTTTTGAAAACATATTATAATTTTTGAAAAT
1 ATAATTTTTGAAAACATATTATAATTTTTGAAAAC
3194467 ATAAT
1 ATAAT
3194472 GTATGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (35 bp):
ATAATTTTTGAAAACATATTATAATTTTTGAAAAC
Found at i:3194441 original size:15 final size:15
Alignment explanation
Indices: 3194421--3194449 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3194411 TATATTATAG
3194421 TTTTTGAAAACATAA
1 TTTTTGAAAACATAA
3194436 TTTTTGAAAACATA
1 TTTTTGAAAACATA
3194450 TTATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (15 bp):
TTTTTGAAAACATAA
Found at i:3194530 original size:17 final size:17
Alignment explanation
Indices: 3194498--3194549 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
3194488 TTTAAAATAA
*
3194498 ATATAGTATATGTATTAT
1 ATATA-TATATATATTAT
3194516 ATATATATATATATTAT
1 ATATATATATATATTAT
*
3194533 TTAT-TACTATATATTAT
1 ATATATA-TATATATTAT
3194550 TATTAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 2 0.06
17 24 0.77
18 5 0.16
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (17 bp):
ATATATATATATATTAT
Found at i:3194550 original size:17 final size:16
Alignment explanation
Indices: 3194504--3194558 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
3194494 ATAAATATAG
* *
3194504 TATATGTATTATATAT
1 TATATATATTATTTAT
3194520 ATATATATATTATTTAT
1 -TATATATATTATTTAT
3194537 TACTATATATTA-TTAT
1 TA-TATATATTATTTAT
3194553 TA-ATAT
1 TATATAT
3194559 TATTTTTCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 4 0.11
16 8 0.23
17 23 0.66
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TATATATATTATTTAT
Found at i:3196888 original size:6 final size:6
Alignment explanation
Indices: 3196877--3196919 Score: 50
Period size: 7 Copynumber: 6.7 Consensus size: 6
3196867 TGGGGTAGAA
*
3196877 ATTTTT ATTTTTT ATTTTT CATTTTT ATTTTT AATTATT ATTT
1 ATTTTT A-TTTTT ATTTTT -ATTTTT ATTTTT -ATTTTT ATTT
3196920 CTAGTTTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 15 0.47
7 17 0.53
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:3196895 original size:13 final size:12
Alignment explanation
Indices: 3196877--3196919 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
3196867 TGGGGTAGAA
3196877 ATTTTTATTTTTT
1 ATTTTTA-TTTTT
3196890 ATTTTTCATTTTT
1 ATTTTT-ATTTTT
*
3196903 ATTTTTAATTATT
1 ATTTTT-ATTTTT
3196916 ATTT
1 ATTT
3196920 CTAGTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 26 0.96
14 1 0.04
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:3201767 original size:27 final size:27
Alignment explanation
Indices: 3201709--3201760 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
3201699 ATTCCTATGT
*
3201709 AAGAAATTCAAAGTACTCTGCGAGTGA
1 AAGAAATTCAAAGTAATCTGCGAGTGA
3201736 AAGAAATTCAAAGTAATCTGCGAGT
1 AAGAAATTCAAAGTAATCTGCGAGT
3201761 ACAAGAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.23
Consensus pattern (27 bp):
AAGAAATTCAAAGTAATCTGCGAGTGA
Found at i:3203927 original size:20 final size:20
Alignment explanation
Indices: 3203899--3203936 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3203889 ATATAATATA
3203899 TATAATTTTTGAAAATATGT
1 TATAATTTTTGAAAATATGT
*
3203919 TATAGTTTTTGAAAATAT
1 TATAATTTTTGAAAATAT
3203937 AATAAATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (20 bp):
TATAATTTTTGAAAATATGT
Found at i:3203999 original size:5 final size:5
Alignment explanation
Indices: 3203979--3204046 Score: 74
Period size: 5 Copynumber: 14.0 Consensus size: 5
3203969 TAGTATATGG
3203979 ATTAT A-TAT A-TAT ATTAT ATTAT -TTATT ATTAT ATATAT ATT-T AATT-T
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA-T ATTAT AT-TAT ATTAT -ATTAT
3204027 ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT
3204047 TTTTCATTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
4 15 0.26
5 34 0.60
6 8 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:3204011 original size:28 final size:25
Alignment explanation
Indices: 3203980--3204044 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 25
3203970 AGTATATGGA
3203980 TTATATATATATATT-ATATTATTTATTA
1 TTATATATATAT-TTAAT-TTA-TTA-TA
3204008 TTATATATATATTTAATTTATTATA
1 TTATATATATATTTAATTTATTATA
3204033 TTATAT-TATATT
1 TTATATATATATT
3204045 ATTTTTCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
24 6 0.17
25 8 0.22
26 3 0.08
27 5 0.14
28 14 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TTATATATATATTTAATTTATTATA
Found at i:3204017 original size:30 final size:30
Alignment explanation
Indices: 3203981--3204043 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
3203971 GTATATGGAT
3203981 TATATATATAT-ATTATATTAT-TTATTATTA
1 TATATATATATAATT-TATTATATTA-TATTA
*
3204011 TATATATATTTAATTTATTATATTATATTA
1 TATATATATATAATTTATTATATTATATTA
3204041 TAT
1 TAT
3204044 TATTTTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (30 bp):
TATATATATATAATTTATTATATTATATTA
Found at i:3205248 original size:15 final size:14
Alignment explanation
Indices: 3205227--3205267 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
3205217 CTTTTAATTC
3205227 TTTTATTTATTTAA
1 TTTTATTTATTTAA
*
3205241 TATTTATTTATTTTA
1 T-TTTATTTATTTAA
3205256 TTTTATTT-TTTA
1 TTTTATTTATTTA
3205268 GCATTAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 3 0.12
14 8 0.33
15 13 0.54
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTATTTATTTAA
Found at i:3205353 original size:12 final size:12
Alignment explanation
Indices: 3205336--3205361 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3205326 GATCGAACTT
3205336 TTAAACTTTTAA
1 TTAAACTTTTAA
3205348 TTAAACTTTTAA
1 TTAAACTTTTAA
3205360 TT
1 TT
3205362 TTTGCAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (12 bp):
TTAAACTTTTAA
Found at i:3206176 original size:31 final size:31
Alignment explanation
Indices: 3206141--3206201 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
3206131 TTTTGTGAAA
* **
3206141 TAATTTAGATTGTTAAGTTGAAATAATTTAG
1 TAATTTAGAATGTTAAGCCGAAATAATTTAG
*
3206172 TAATTTAGAATGTTACGCCGAAATAATTTA
1 TAATTTAGAATGTTAAGCCGAAATAATTTA
3206202 AAATTAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (31 bp):
TAATTTAGAATGTTAAGCCGAAATAATTTAG
Found at i:3207998 original size:17 final size:17
Alignment explanation
Indices: 3207978--3208025 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
3207968 AAAATTTTGA
* *
3207978 AGGAATTGAAATCTGTC
1 AGGAATTGTAATCCGTC
3207995 AGGAATTGTAATCCGTC
1 AGGAATTGTAATCCGTC
3208012 AGGAATTGTAATCC
1 AGGAATTGTAATCC
3208026 AATTCCATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (17 bp):
AGGAATTGTAATCCGTC
Found at i:3208593 original size:28 final size:27
Alignment explanation
Indices: 3208561--3208661 Score: 130
Period size: 33 Copynumber: 3.5 Consensus size: 27
3208551 CCTAAACCCG
3208561 AACCCGACCCGAATATCACACTTAAAAA
1 AACCCGACCCGAATATCACACTT-AAAA
3208589 AACCCGACCCGACCAAAATATCACACTTTAAAA
1 AACCCGACCCG-----AATATCACAC-TTAAAA
3208622 AACCCGACCCGAATATCACACTTAAAA
1 AACCCGACCCGAATATCACACTTAAAA
*
3208649 AACCCGACACGAA
1 AACCCGACCCGAA
3208662 CAAAATAAAG
Statistics
Matches: 66, Mismatches: 1, Indels: 13
0.82 0.01 0.16
Matches are distributed among these distances:
27 18 0.27
28 21 0.32
33 25 0.38
34 2 0.03
ACGTcount: A:0.46, C:0.34, G:0.08, T:0.13
Consensus pattern (27 bp):
AACCCGACCCGAATATCACACTTAAAA
Found at i:3208602 original size:33 final size:32
Alignment explanation
Indices: 3208554--3208656 Score: 133
Period size: 28 Copynumber: 3.3 Consensus size: 32
3208544 TTTTCACCCT
3208554 AAACCCGAACCCGACCCGAATATCACACTTAAAA
1 AAACCCG-ACCCGACCCGAATATCACACTT-AAA
** *
3208588 AAACCCGACCCGACCAAAATATCACACTTTAA
1 AAACCCGACCCGACCCGAATATCACACTTAAA
3208620 AAA----ACCCGACCCGAATATCACACTTAAA
1 AAACCCGACCCGACCCGAATATCACACTTAAA
3208648 AAACCCGAC
1 AAACCCGAC
3208657 ACGAACAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
28 25 0.42
32 7 0.12
33 20 0.34
34 7 0.12
ACGTcount: A:0.45, C:0.35, G:0.08, T:0.13
Consensus pattern (32 bp):
AAACCCGACCCGACCCGAATATCACACTTAAA
Found at i:3212149 original size:33 final size:34
Alignment explanation
Indices: 3212075--3212161 Score: 113
Period size: 38 Copynumber: 2.5 Consensus size: 34
3212065 CGAGGGTTTG
*
3212075 GTGTTTCAAGAGAAACATTTTCAAAGGTTTTTTTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGG----TTTTTTT
*
3212113 GTGTTTCAAGAGAAATAATTTCAAAGG-TTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTTT
3212146 GTGTTTCAAGAGAAAC
1 GTGTTTCAAGAGAAAC
3212162 TGTATTCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
33 21 0.46
38 25 0.54
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (34 bp):
GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTTT
Found at i:3212302 original size:102 final size:100
Alignment explanation
Indices: 3212178--3212473 Score: 286
Period size: 102 Copynumber: 3.0 Consensus size: 100
3212168 CAAAGATTGA
**
3212178 AGTTTCAAGGGAAGTTGTCTCAAGAGAGACCAAAATTCATTTCAAGGGAAATGTTTCAATGTTTA
1 AGTTTCAAGGGAAAATGTCTCAAG-GAGA-CAAAATTCATTTCAAGGGAAATGTTTCAATGTTTA
* * *
3212243 TGTTTCAAGAGAAACTGTCTTAAGGGAGACAAAATTT
64 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTT
* ** * *
3212280 TGTTTCAAGGGAACCTATCT--------CAAAATTCATTTCAAGGGAAATGTTTTTAATGTTTAT
1 AGTTTCAAGGGAAAATGTCTCAAGGAGACAAAATTCATTTCAAGGGAAATG-TTTCAATGTTTAT
* *
3212337 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAACTT
65 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTT
* ** * ** ** *
3212373 AGTTCCAACAGAAAATGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACATATTCAAAGATTT
1 AGTTTCAAGGGAAAATGTCTCAA-GGAGACAAAATTCATTTCAAGGGAAATGT-TTCAATG-TTT
3212438 -TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATT
63 ATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATT
3212474 CATCTCAAGG
Statistics
Matches: 156, Mismatches: 26, Indels: 24
0.76 0.13 0.12
Matches are distributed among these distances:
92 23 0.15
93 56 0.36
101 1 0.01
102 73 0.47
103 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (100 bp):
AGTTTCAAGGGAAAATGTCTCAAGGAGACAAAATTCATTTCAAGGGAAATGTTTCAATGTTTATG
TTTCAAGAGAAACTATCTCAAGAGAGACAAAATTT
Found at i:3212481 original size:86 final size:86
Alignment explanation
Indices: 3212390--3212557 Score: 248
Period size: 86 Copynumber: 2.0 Consensus size: 86
3212380 ACAGAAAATG
* ** *
3212390 TCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACATATTCAAAGATTT-TGTTTCAAGAGAAACT
1 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACATATTCAAAG-TTTATGTTTCAAGAGAAACT
3212454 ATCTCAAGAGAGACAAAATTCA
65 ATCTCAAGAGAGACAAAATTCA
** * *
3212476 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTA
1 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACATATTCAAAGTTTATGTTTCAAGAGAAACTA
3212541 TCTCAAGAGAGACAAAA
66 TCTCAAGAGAGACAAAA
3212558 CTTAGTTCCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 3 0.04
86 70 0.96
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (86 bp):
TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACATATTCAAAGTTTATGTTTCAAGAGAAACTA
TCTCAAGAGAGACAAAATTCA
Found at i:3212504 original size:21 final size:21
Alignment explanation
Indices: 3212454--3212506 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
3212444 AAGAGAAACT
*
3212454 ATCTCAAGAGAGACAAAATTC
1 ATCTCAAGGGAGACAAAATTC
3212475 ATCTCAAGGGAGACAAAATTC
1 ATCTCAAGGGAGACAAAATTC
3212496 ATCTCAAGGGA
1 ATCTCAAGGGA
3212507 AATGTTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (21 bp):
ATCTCAAGGGAGACAAAATTC
Found at i:3212525 original size:188 final size:188
Alignment explanation
Indices: 3212300--3212673 Score: 667
Period size: 188 Copynumber: 2.0 Consensus size: 188
3212290 GAACCTATCT
* *
3212300 CAAAATTCATTTCAAGGGAAATGTTTTTAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAA
1 CAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAA
* *
3212365 CAAAACTTAGTTCCAACAGAAAATGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACATATTC
66 CAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACAAATTC
*
3212430 AAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCATCTCAAGGGAGA
131 AAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATCATCTCAAGGGAGA
*
3212488 CAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGA
1 CAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAA
*
3212553 CAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGATGAAATTTGTTTCAAGGGAAACAAATTC
66 CAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACAAATTC
* *
3212618 AAAGATTTTTTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATCATTTCAAGGGA
131 AAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATCATCTCAAGGGA
3212674 AATGTTTTCA
Statistics
Matches: 177, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
188 177 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (188 bp):
CAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAA
CAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAACAAATTC
AAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATCATCTCAAGGGAGA
Found at i:3212586 original size:102 final size:102
Alignment explanation
Indices: 3212476--3212659 Score: 253
Period size: 102 Copynumber: 1.8 Consensus size: 102
3212466 ACAAAATTCA
**** *
3212476 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAATGTTTTCAATG-TTTATGTTTCAAGAGAAACT
1 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACAAATTCAAAGATTT-TGTTTCAAGAGAAACT
3212540 ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATG
65 ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATG
** ** * *
3212578 TCTCAAGGGAGATGAAATTTGTTTCAAGGGAAACAAATTCAAAGATTTTTTTTCAAGAGAAACTA
1 TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACAAATTCAAAGATTTTGTTTCAAGAGAAACTA
3212643 TCTCAAGAGAGACAAAA
66 TCTCAAGAGAGACAAAA
3212660 ATCATTTCAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
102 67 0.96
103 3 0.04
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.27
Consensus pattern (102 bp):
TCTCAAGGGAGACAAAATTCATCTCAAGGGAAACAAATTCAAAGATTTTGTTTCAAGAGAAACTA
TCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATG
Found at i:3212674 original size:65 final size:65
Alignment explanation
Indices: 3212599--3212724 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 65
3212589 ATGAAATTTG
*
3212599 TTTCAAGGGAAACAAATTCAAAGATTT-TTTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATC
1 TTTCAAGGGAAACAAATTCAAAG-TTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATC
3212663 A
65 A
**** * * * *
3212664 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGATAAAA
1 TTTCAAGGGAAACAAATTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA
3212725 TTTTGTTTCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
64 3 0.06
65 48 0.94
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.29
Consensus pattern (65 bp):
TTTCAAGGGAAACAAATTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAAATCA
Found at i:3212741 original size:37 final size:36
Alignment explanation
Indices: 3212691--3212771 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 36
3212681 TCAATGTTTA
* * *
3212691 TGTTTCAAGAGAAACTGTCTCAAGGGAGATAAAATTT
1 TGTTTCAAAAGAAAATGTCTCAAGGGAGACAAAA-TT
3212728 TGTTTCAAAAGAAAATGTCTCAAGGGAGACAAAATT
1 TGTTTCAAAAGAAAATGTCTCAAGGGAGACAAAATT
*
3212764 AGTTTCAA
1 TGTTTCAA
3212772 TGAAAACATA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 9 0.22
37 31 0.77
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (36 bp):
TGTTTCAAAAGAAAATGTCTCAAGGGAGACAAAATT
Found at i:3212801 original size:167 final size:167
Alignment explanation
Indices: 3212475--3212808 Score: 506
Period size: 167 Copynumber: 2.0 Consensus size: 167
3212465 GACAAAATTC
* *
3212475 ATCTCAAGGGAGACAAAATTCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACT
1 ATCTCAAGAGAGACAAAAATCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACT
** *
3212540 ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGATGAAATTTGTTTCAA
66 ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACAAAATTAGTTTCAA
* *
3212605 GGGAAACAAATTCAAAGATTTTTTTTCAAGAGAAACT
131 GGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAACT
*
3212642 ATCTCAAGAGAGACAAAAATCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACT
1 ATCTCAAGAGAGACAAAAATCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACT
* * * * * *
3212707 GTCTCAAGGGAGATAAAATTTTGTTTCAAAAGAAAATGTCTCAAGGGAGACAAAATTAGTTTCAA
66 ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACAAAATTAGTTTCAA
* * * *
3212772 TGAAAACATATTCAAATATTTTGTTTCAAGGGAAACT
131 GGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAACT
3212809 TGGAAACTGT
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
167 149 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (167 bp):
ATCTCAAGAGAGACAAAAATCATCTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACT
ATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATGTCTCAAGGGAGACAAAATTAGTTTCAA
GGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAACT
Found at i:3213148 original size:106 final size:105
Alignment explanation
Indices: 3212957--3213278 Score: 437
Period size: 106 Copynumber: 3.0 Consensus size: 105
3212947 GTATTGTTCT
* ** * * * ** *
3212957 GAGTCCAATATCCTCCGACGTGAAGTTAAAATTGGCTCTGGAACTAAGAAATTGTTTGTTGACAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * *
3213022 CCAGCCGCCCTTTTGCTGTGAAGTTGAACTTGTGCTGTCTC
66 CCAGCCTCCC-TTCGTTGTGAAGTTGAACTTGTGTTGTCTC
*
3213063 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
3213128 CCAACCATCCCTTCGTTGTGAAGTTGAACTTGTGTTATCTC
66 CCAGCC-TCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
*
3213169 GAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * *
3213234 CCAGCCGTCCCTTCATTGTGGAGTTGAACTTGTGTTGTCTT
66 CCAGCC-TCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
3213275 GAGT
1 GAGT
3213279 GGCACGATAT
Statistics
Matches: 191, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
106 188 0.98
107 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCCTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
Found at i:3214951 original size:69 final size:69
Alignment explanation
Indices: 3214835--3214972 Score: 197
Period size: 69 Copynumber: 2.0 Consensus size: 69
3214825 TGTCTCTCTC
*
3214835 TTGATGCTCCATGATCTTCGAGTGGAGTGATTCAGTAATTCAGAAATGATTGTGCTTGATCAATC
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTGTGCTTGATCAATC
3214900 TCAT
66 TCAT
* * * * * *
3214904 TTGATGCTCTATGATCTTCGATTGAAGTGGTTCTGTGATTC-GAAAATGCTTGTGCTTGATCAAT
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAG-AAATGATTGTGCTTGATCAAT
3214968 CTCAT
65 CTCAT
3214973 AGTTTGAATC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 1 0.02
69 60 0.98
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (69 bp):
TTGATGCTCCATGATCTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTGTGCTTGATCAATC
TCAT
Found at i:3215054 original size:26 final size:27
Alignment explanation
Indices: 3215025--3215093 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
3215015 CATATGCATC
3215025 TTGTCTTTTTTTTCTTCAATTTTC-CT
1 TTGTCTTTTTTTTCTTCAATTTTCTCT
* **
3215051 TTGT-TTTTTTCTCTTTTTATTTTCTCT
1 TTGTCTTTTTTTTC-TTCAATTTTCTCT
3215078 TTG-CTTTTTTTCTCTT
1 TTGTCTTTTTTT-TCTT
3215094 TTTGCTTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
25 8 0.23
26 12 0.34
27 13 0.37
28 2 0.06
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (27 bp):
TTGTCTTTTTTTTCTTCAATTTTCTCT
Found at i:3215088 original size:15 final size:14
Alignment explanation
Indices: 3215044--3215094 Score: 70
Period size: 13 Copynumber: 3.7 Consensus size: 14
3215034 TTTTCTTCAA
3215044 TTTTC-CTTTGTTT
1 TTTTCTCTTTGTTT
*
3215057 TTTTCTCTTT-TTA
1 TTTTCTCTTTGTTT
3215070 TTTTCTCTTTGCTTT
1 TTTTCTCTTTG-TTT
3215085 TTTTCTCTTT
1 TTTTCTCTTT
3215095 TTGCTTTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 17 0.52
14 4 0.12
15 12 0.36
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.76
Consensus pattern (14 bp):
TTTTCTCTTTGTTT
Found at i:3215092 original size:28 final size:26
Alignment explanation
Indices: 3215043--3215096 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 26
3215033 TTTTTCTTCA
3215043 ATTTTCCTTTGTTTTTTTCTCTTTTT
1 ATTTTCCTTTGTTTTTTTCTCTTTTT
3215069 ATTTTCTCTTTGCTTTTTTTCTCTTTTT
1 ATTTTC-CTTTG-TTTTTTTCTCTTTTT
3215097 GCTTTGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 6 0.23
27 5 0.19
28 15 0.58
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.76
Consensus pattern (26 bp):
ATTTTCCTTTGTTTTTTTCTCTTTTT
Found at i:3215097 original size:17 final size:18
Alignment explanation
Indices: 3215063--3215101 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
3215053 GTTTTTTTCT
*
3215063 CTTTTTATTTTCTCTTTG
1 CTTTTTATTCTCTCTTTG
*
3215081 CTTTTT-TTCTCTTTTTG
1 CTTTTTATTCTCTCTTTG
3215098 CTTT
1 CTTT
3215102 GATTAAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.03, C:0.18, G:0.05, T:0.74
Consensus pattern (18 bp):
CTTTTTATTCTCTCTTTG
Found at i:3223888 original size:25 final size:25
Alignment explanation
Indices: 3223840--3223888 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
3223830 AATTTTATAA
* **
3223840 AATTTTATAGAAAATAAACTTAAAG
1 AATTTTATAGAAAAAAAAAATAAAG
3223865 AATTTTATAGAAAAAAAAAATAAA
1 AATTTTATAGAAAAAAAAAATAAA
3223889 TTACCTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (25 bp):
AATTTTATAGAAAAAAAAAATAAAG
Found at i:3226459 original size:24 final size:24
Alignment explanation
Indices: 3226432--3226480 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
3226422 TGAAACTGCG
* * *
3226432 CGTAGAATTTGCACCTATGTGCCA
1 CGTAGAATATGCACCGAAGTGCCA
3226456 CGTAGAATATGCACCGAAGTGCCA
1 CGTAGAATATGCACCGAAGTGCCA
3226480 C
1 C
3226481 AGATTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (24 bp):
CGTAGAATATGCACCGAAGTGCCA
Found at i:3226655 original size:15 final size:15
Alignment explanation
Indices: 3226634--3226718 Score: 116
Period size: 15 Copynumber: 5.7 Consensus size: 15
3226624 AAGTACCATT
*
3226634 TATTCACATAAAACA
1 TATTCACATAGAACA
* *
3226649 CATTCACATATAACA
1 TATTCACATAGAACA
3226664 TATTCACATAGAACA
1 TATTCACATAGAACA
* *
3226679 TTTTCACTTAGAACA
1 TATTCACATAGAACA
*
3226694 TATTCACATATAACA
1 TATTCACATAGAACA
3226709 TATTCACATA
1 TATTCACATA
3226719 CTAATAAATT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 61 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (15 bp):
TATTCACATAGAACA
Found at i:3227233 original size:21 final size:20
Alignment explanation
Indices: 3227188--3227237 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
3227178 CTTACTATGG
3227188 GTATCGATACCTCCATATCA
1 GTATCGATACCTCCATATCA
* *
3227208 ATATCGATACTACTTCA-ATCA
1 GTATCGATAC--CTCCATATCA
3227229 GTATCGATA
1 GTATCGATA
3227238 ATGTTCATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 9 0.36
21 12 0.48
22 4 0.16
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (20 bp):
GTATCGATACCTCCATATCA
Found at i:3230399 original size:81 final size:81
Alignment explanation
Indices: 3230264--3230675 Score: 540
Period size: 81 Copynumber: 5.1 Consensus size: 81
3230254 CTGTTTTAAA
* * * * *
3230264 TAAAAGATTAATTGCATAGCTATGAATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
3230329 GTTTAATATCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
3230345 TAAAAGATTAATTGCCTAGCTGTGCATTTGATAGAAATGTGTCAATTATGCCAGTTATATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
3230410 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
3230426 TAAAAGAATAATTGCCTAGCTGTGCATTAGACAAAAAGGTGTCAATTACGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
3230491 ATTTAATACCTTTGAG
66 GTTAAATACCTTTGAG
*
3230507 TAAAAGATTAATTGCCTAGTTGTGCATTTGGA-AAAAAGGTGTCAATTATGCCAGTTAGATGAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTT-GACAAAAAGGTGTCAATTATGCCAGTTAGATGAAA
* *
3230571 GGCTAAATGCCTTTGAG
65 GGTTAAATACCTTTGAG
* * * * *
3230588 TTAAAGATTAAATGCCTAGCTGTGCATTT-AGCATAAAGGTGTCAATCATGCAAGTTAGATGAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGA-CAAAAAGGTGTCAATTATGCCAGTTAGATGAAA
* * * *
3230652 GGCTAAATGCCTTAGGG
65 GGTTAAATACCTTTGAG
3230669 TAAAAGA
1 TAAAAGA
3230676 CTAAATGTTA
Statistics
Matches: 295, Mismatches: 33, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
79 1 0.00
81 292 0.99
82 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:3235701 original size:24 final size:24
Alignment explanation
Indices: 3235674--3235750 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
3235664 AAACATGTTA
3235674 GGAAAAGTGGTATGATTCTTAGAT
1 GGAAAAGTGGTATGATTCTTAGAT
3235698 GGAAAAGTGGTATGATTCTTAGAT
1 GGAAAAGTGGTATGATTCTTAGAT
* *
3235722 GGAAAAGTGGTATAATTTTTAGAT
1 GGAAAAGTGGTATGATTCTTAGAT
3235746 GGAAA
1 GGAAA
3235751 TGTTCTTGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.36, C:0.03, G:0.29, T:0.32
Consensus pattern (24 bp):
GGAAAAGTGGTATGATTCTTAGAT
Found at i:3237096 original size:81 final size:81
Alignment explanation
Indices: 3236516--3237089 Score: 844
Period size: 81 Copynumber: 7.1 Consensus size: 81
3236506 CTGTTTTAAA
* * * *
3236516 TAAAAGATTAATTGTCTAGCTGTGCATTTGACAGAAATGTGGCAATTATGTCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
3236581 GTGT-AATACCTTAGAG
66 GT-TAAATACCTTTGAG
* * * *
3236597 TAAAATATTAATTGCCTAGCTATGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATTAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
3236662 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
3236678 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAATTATATGAAAT
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
3236743 GTTTAATTCCTTTGAG
66 GTTAAATACCTTTGAG
* *
3236759 TAAAAGATTAATTGCCTAGCTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTGGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
3236824 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
3236840 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
3236905 GTTTAATACCTTTGAC
66 GTTAAATACCTTTGAG
* * *
3236921 TAAAAGATTAATTGCCTAGATGTGTATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
3236986 GCTAAATGCCTTTGAG
66 GTTAAATACCTTTGAG
* * ** * *
3237002 TTAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATCATGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* * *
3237067 GCTAAATGCCTTTGGG
66 GTTAAATACCTTTGAG
3237083 TAAAAGA
1 TAAAAGA
3237090 CTAAATGTTA
Statistics
Matches: 449, Mismatches: 43, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
80 1 0.00
81 448 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:3241397 original size:24 final size:24
Alignment explanation
Indices: 3241366--3241419 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3241356 CAGTCGAAAC
*
3241366 TGCCACGTAGAATTTGCACCGAAG
1 TGCCACGTAGAATATGCACCGAAG
*
3241390 TGCCACGTAGAATATGCATCGAAG
1 TGCCACGTAGAATATGCACCGAAG
3241414 TGCCAC
1 TGCCAC
3241420 ATATATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (24 bp):
TGCCACGTAGAATATGCACCGAAG
Found at i:3241494 original size:23 final size:23
Alignment explanation
Indices: 3241427--3241495 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
3241417 CACATATATT
* *
3241427 TTATCCCGAAGGACCGCGTAAAA
1 TTATCCCGAAGGACCACGTAGAA
* *
3241450 TTTTCCCGAAGGACCACATAGAA
1 TTATCCCGAAGGACCACGTAGAA
*
3241473 TTATCCTGAAGGACCACGTAGAA
1 TTATCCCGAAGGACCACGTAGAA
3241496 CCTTCGACCC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (23 bp):
TTATCCCGAAGGACCACGTAGAA
Found at i:3241633 original size:15 final size:15
Alignment explanation
Indices: 3241598--3241667 Score: 86
Period size: 15 Copynumber: 4.7 Consensus size: 15
3241588 AATTATCATT
* *
3241598 TATTCACATAAAATA
1 TATTCACATAGAACA
*
3241613 CATTCACATAGAACA
1 TATTCACATAGAACA
* *
3241628 TTTTCACGTAGAACA
1 TATTCACATAGAACA
*
3241643 TATTCACATATAACA
1 TATTCACATAGAACA
3241658 TATTCACATA
1 TATTCACATA
3241668 CTAATAAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.31
Consensus pattern (15 bp):
TATTCACATAGAACA
Found at i:3242178 original size:21 final size:21
Alignment explanation
Indices: 3242152--3242266 Score: 98
Period size: 21 Copynumber: 5.6 Consensus size: 21
3242142 ATACCTCCAC
3242152 ATCAGTATCGATACTACTTCA
1 ATCAGTATCGATACTACTTCA
**
3242173 ATCAGTATCGATA-TTGTTC-
1 ATCAGTATCGATACTACTTCA
* * *
3242192 ATCTG-ATTC-ATA-TAATTTCC
1 ATCAGTA-TCGATACT-ACTTCA
*
3242212 TTCAGTATCGATACT-CTTTCA
1 ATCAGTATCGATACTAC-TTCA
3242233 ATCAGTATCGATACTACTTCA
1 ATCAGTATCGATACTACTTCA
*
3242254 ATCAATATCGATA
1 ATCAGTATCGATA
3242267 TAGTATCGGT
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
18 5 0.07
19 9 0.12
20 9 0.12
21 50 0.67
22 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (21 bp):
ATCAGTATCGATACTACTTCA
Found at i:3244016 original size:54 final size:54
Alignment explanation
Indices: 3243939--3244105 Score: 271
Period size: 54 Copynumber: 3.1 Consensus size: 54
3243929 CTATGTGTAC
*
3243939 TATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTATCG
1 TATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTACCG
*
3243993 TATCGACACTATGTGTGCAACCCACGAAATTTATAATGAGTTTGTGAATTACCG
1 TATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTACCG
* * * * *
3244047 TATCAACACTATGTGTGCAACCCATGGAATTCATAATGAGTTTGTGAATTTCCA
1 TATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTACCG
3244101 TATCG
1 TATCG
3244106 GTACTTAGGT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (54 bp):
TATCGACACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTACCG
Found at i:3246404 original size:21 final size:21
Alignment explanation
Indices: 3246357--3246404 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
3246347 CCTAAGACGT
* *
3246357 TGTTTTAATAAAAATTAAAAT
1 TGTTTTAATAAAAATGAAAAC
* * *
3246378 TATTTTTATTAAAATGAAAAC
1 TGTTTTAATAAAAATGAAAAC
3246399 TGTTTT
1 TGTTTT
3246405 GGGTGCCCAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (21 bp):
TGTTTTAATAAAAATGAAAAC
Found at i:3248756 original size:24 final size:24
Alignment explanation
Indices: 3248708--3248823 Score: 148
Period size: 24 Copynumber: 4.8 Consensus size: 24
3248698 CATAAATCAG
*
3248708 GTCAAGTATCATAT-ATGAAAT-CAA
1 GTCAAGTATCAGATCA-G-AATCCAA
*
3248732 GTCAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
3248756 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
*
3248780 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAA
3248804 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
3248824 TCAAATCGAA
Statistics
Matches: 84, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.06
24 76 0.90
25 3 0.04
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:3248839 original size:48 final size:48
Alignment explanation
Indices: 3248741--3248841 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
3248731 AGTCAAGTAA
** *
3248741 CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCATGTCAGATAT
1 CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAGAAAT
* *
3248789 CAGATCAGAATCCATGTCAAGTATCAGATCAGAATTCAAATC-GAAAAT
1 CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAG-AAAT
3248837 CAGAT
1 CAGAT
3248842 AAAATATTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.02
48 46 0.98
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (48 bp):
CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAGAAAT
Found at i:3253350 original size:24 final size:24
Alignment explanation
Indices: 3253323--3253374 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
3253313 AACGGATATA
*
3253323 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
3253347 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
3253371 TCAA
1 TCAA
3253375 GTAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:3253460 original size:24 final size:24
Alignment explanation
Indices: 3253346--3253460 Score: 128
Period size: 24 Copynumber: 4.8 Consensus size: 24
3253336 CATAAATCAG
* *
3253346 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAT
* *
3253370 GTCAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
3253394 GT-AAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
* *
3253417 GT-TAGATATCAGATTAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
*
3253441 GTCAAGTATCGGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
3253461 TCAAATAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
23 26 0.33
24 50 0.64
25 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:3253476 original size:48 final size:47
Alignment explanation
Indices: 3253379--3253478 Score: 110
Period size: 48 Copynumber: 2.1 Consensus size: 47
3253369 GGTCAAGTAA
** * * *
3253379 CAGATCAGAATCCAAGTAAGTATCAGATCAGAATCCATGTTAGATAT
1 CAGATCAGAATCCAAGTAAGTATCAGATCAGAATCCAAATAAAAAAT
* * * *
3253426 CAGATTAGAATCCATGTCAAGTATCGGATCAGAATTCAAATAAAAAAT
1 CAGATCAGAATCCAAGT-AAGTATCAGATCAGAATCCAAATAAAAAAT
3253474 CAGAT
1 CAGAT
3253479 AAAATATTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
47 15 0.35
48 28 0.65
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (47 bp):
CAGATCAGAATCCAAGTAAGTATCAGATCAGAATCCAAATAAAAAAT
Found at i:3258595 original size:19 final size:19
Alignment explanation
Indices: 3258538--3258595 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
3258528 AATCAACACC
3258538 TTACATTTT-GCATATACATT
1 TTAC-TTTTCGCAT-TACATT
**
3258558 TTACTTTTCGCATCGCATT
1 TTACTTTTCGCATTACATT
3258577 TTA-TCTTTCGCATTACATT
1 TTACT-TTTCGCATTACATT
3258596 ATATTCATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 1 0.03
19 23 0.72
20 8 0.25
ACGTcount: A:0.22, C:0.21, G:0.07, T:0.50
Consensus pattern (19 bp):
TTACTTTTCGCATTACATT
Found at i:3267488 original size:5 final size:5
Alignment explanation
Indices: 3267478--3267518 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
3267468 GGTTTATATA
*
3267478 ATTAT ATTAT ATTAT ATTATT ATTA- GTTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT AT
3267519 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
4 7 0.23
5 19 0.61
6 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:3267494 original size:18 final size:20
Alignment explanation
Indices: 3267471--3267515 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
3267461 TCGTTTGGGT
3267471 TTATATAATTA-TA-TTATA
1 TTATATAATTATTAGTTATA
*
3267489 TTATATTATTATTAGTTATA
1 TTATATAATTATTAGTTATA
3267509 TTATATA
1 TTATATA
3267516 TATGTGTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 2 0.09
20 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTATATAATTATTAGTTATA
Found at i:3270858 original size:24 final size:24
Alignment explanation
Indices: 3270830--3270878 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
3270820 CAACCAACTT
3270830 TCATTTATCACGTAGGAGAAATTG
1 TCATTTATCACGTAGGAGAAATTG
3270854 TCATTTATCACGTAGGAGAAATTG
1 TCATTTATCACGTAGGAGAAATTG
3270878 T
1 T
3270879 TAGTTTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (24 bp):
TCATTTATCACGTAGGAGAAATTG
Found at i:3271418 original size:14 final size:14
Alignment explanation
Indices: 3271385--3271476 Score: 130
Period size: 14 Copynumber: 6.5 Consensus size: 14
3271375 GACCTGACCA
* *
3271385 AGTCAACCCAGTCCG
1 AGTCAACTCA-TCTG
3271400 AGTCAACTCATCTG
1 AGTCAACTCATCTG
*
3271414 AGTCAACTCATATG
1 AGTCAACTCATCTG
3271428 AGTCAACTCATCTG
1 AGTCAACTCATCTG
3271442 AGTCAACTCATCTG
1 AGTCAACTCATCTG
* *
3271456 AGTCAACTCGTTTG
1 AGTCAACTCATCTG
3271470 AGTCAAC
1 AGTCAAC
3271477 CTATTGACTT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
14 62 0.87
15 9 0.13
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (14 bp):
AGTCAACTCATCTG
Found at i:3271499 original size:14 final size:14
Alignment explanation
Indices: 3271480--3271532 Score: 72
Period size: 14 Copynumber: 3.9 Consensus size: 14
3271470 AGTCAACCTA
3271480 TTGACTTTGACCCG
1 TTGACTTTGACCCG
* *
3271494 TTGACTTTGA-TCA
1 TTGACTTTGACCCG
3271507 TTGACTTTGACCCG
1 TTGACTTTGACCCG
*
3271521 TTAACTTTGACC
1 TTGACTTTGACC
3271533 AAAAAGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
13 11 0.33
14 22 0.67
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.40
Consensus pattern (14 bp):
TTGACTTTGACCCG
Found at i:3271509 original size:27 final size:27
Alignment explanation
Indices: 3271479--3271530 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
3271469 GAGTCAACCT
*
3271479 ATTGACTTTGACCCGTTGACTTTGATC
1 ATTGACTTTGACCCGTTAACTTTGATC
3271506 ATTGACTTTGACCCGTTAACTTTGA
1 ATTGACTTTGACCCGTTAACTTTGA
3271531 CCAAAAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTGACTTTGACCCGTTAACTTTGATC
Found at i:3274340 original size:26 final size:27
Alignment explanation
Indices: 3274292--3274342 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
3274282 CTTGTATTTA
* **
3274292 TGTTTTTTATTTTTATTTTTTATGTTG
1 TGTTTTCTATTTTTATTAATTATGTTG
3274319 TGTTTTCTATTTTT-TTAATTATGT
1 TGTTTTCTATTTTTATTAATTATGT
3274343 ATATTAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.75
Consensus pattern (27 bp):
TGTTTTCTATTTTTATTAATTATGTTG
Found at i:3286694 original size:13 final size:13
Alignment explanation
Indices: 3286673--3286707 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
3286663 CCCACTTACT
3286673 TTTCACTTTTCAC
1 TTTCACTTTTCAC
* *
3286686 TTTCTCTTTTTAC
1 TTTCACTTTTCAC
3286699 TTTCACTTT
1 TTTCACTTT
3286708 CTAGTTTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTCACTTTTCAC
Found at i:3294964 original size:55 final size:54
Alignment explanation
Indices: 3294827--3294968 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
3294817 CGCGATTTTT
* * * * *
3294827 AGAAACTAAGCCTAATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTTTTAA
1 AGAAATTAAGTCTGATTATCAGAAGTTTCTTGACGATTTTCAAATGAGTTTCAA
* * *
3294881 AGAAATTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTTATATGAGCTTTCAA
1 AGAAATTAAGTCTGATTATCAGAAGTTTCTTGACGATTTTCAAATGAG-TTTCAA
**
3294936 AG-AATCTAAGTCTGATTATCAGGGGTTTCTTGA
1 AGAAAT-TAAGTCTGATTATCAGAAGTTTCTTGA
3294969 TTATTTCCAA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 46 0.60
55 31 0.40
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (54 bp):
AGAAATTAAGTCTGATTATCAGAAGTTTCTTGACGATTTTCAAATGAGTTTCAA
Found at i:3295047 original size:56 final size:55
Alignment explanation
Indices: 3294941--3295123 Score: 194
Period size: 56 Copynumber: 3.3 Consensus size: 55
3294931 TTCAAAGAAT
* * *
3294941 CTAAGTCTGATTATCAGGGGTTTC-T-TGATTATTTCCAATGAATTTTAAATAAG
1 CTAAGCCTGATTTTCAGGGGTTTCTTATGATTATTTCCAATGAATTTTAAATAAC
**
3294994 CTAAGCCTGATTTTCAGGGGTTTCTTCATGATTATTTCCCTTGAATTTTAAATAAC
1 CTAAGCCTGATTTTCAGGGGTTTCTT-ATGATTATTTCCAATGAATTTTAAATAAC
* * * * * *
3295050 CTAAGCCTAATTTTCAAGGGTTTCTTGATAATTATTTCTAA--AATTTTTAAAGAAT
1 CTAAGCCTGATTTTCAGGGGTTTCTT-ATGATTATTTCCAATGAA-TTTTAAATAAC
* *
3295105 CTAAGCCTAATTTTTAGGG
1 CTAAGCCTGATTTTCAGGG
3295124 TTTTATTGAT
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 22 0.20
54 3 0.03
55 26 0.24
56 59 0.54
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.42
Consensus pattern (55 bp):
CTAAGCCTGATTTTCAGGGGTTTCTTATGATTATTTCCAATGAATTTTAAATAAC
Found at i:3295501 original size:42 final size:41
Alignment explanation
Indices: 3295440--3295559 Score: 109
Period size: 41 Copynumber: 2.9 Consensus size: 41
3295430 TTAGTAAGTT
* *
3295440 CTTCGAGCCAT-CAGTAAGTCGTTCGAGCATGATGTTTAAATC
1 CTTCGGGCCATCCA-TAAGTC-TTCGAGCAAGATGTTTAAATC
* * * * *
3295482 CTTCGGGTCATCTATAAGTCTTTTGAGCAAGATG-ATAAGTC
1 CTTCGGGCCATCCATAAGTC-TTCGAGCAAGATGTTTAAATC
* *
3295523 CTTCGGGCCATCCATAAGATCTTCGGGCAGGATGTTT
1 CTTCGGGCCATCCATAAG-TCTTCGAGCAAGATGTTT
3295560 TCACATGATT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
41 31 0.51
42 29 0.48
43 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
CTTCGGGCCATCCATAAGTCTTCGAGCAAGATGTTTAAATC
Found at i:3295540 original size:41 final size:42
Alignment explanation
Indices: 3295434--3295545 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 42
3295424 TGTTACTTAG
* * * * *
3295434 TAAGTTCTTCGAGCCAT-CAGTAAGTCGTTCGAGCATGATGTT
1 TAAGTCCTTCGGGCCATCCA-TAAGTCTTTCGAGCAAGATGTA
* * * *
3295476 TAAATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGTA
3295517 TAAGTCCTTCGGGCCATCCATAAGATCTT
1 TAAGTCCTTCGGGCCATCCATAAG-TCTT
3295546 CGGGCAGGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
41 21 0.38
42 34 0.61
43 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (42 bp):
TAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGTA
Found at i:3295620 original size:240 final size:237
Alignment explanation
Indices: 3295191--3295895 Score: 853
Period size: 221 Copynumber: 3.0 Consensus size: 237
3295181 GATTTCTTGA
* * * *
3295191 TTAGTAAG-TCATTCGGGCCATCAGTAAGTCTTTCGAGCACGATG-TTAAATCCATCGGATTATC
1 TTAGTAAGTTC-TTCGAGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAATCCTTCGGGTCATC
* * * * *
3295254 TATTAGTCTTTCGAAG-AATATGATAAGTTCTTCGGGCCGTCCATAAGACCTTCGGGTTAGATGT
65 TATAAGTCTTTTG-AGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGG-TAGATGT
* * * * *
3295318 TTTCATATGATTTTTGAAAAATGCGAAAGCGATTTCCAAAGTTTCTCATTAAAATTTTTTCTGAA
128 TTTCACATGA-TTTTCAAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATATTTTCTGAA
*
3295383 AACTGACTTTTCTTAAAAGTAAGAAAACAATTTCCAAAGTTTGTTAC
192 AACTGATTTTTCTTAAAAGTAAGAAAACAATTTCCAAAGTTT-TTAC
* *
3295430 TTAGTAAGTTCTTCGAGCCATCAGTAAGTCGTTCGAGCATGATGTTTAAATCCTTCGGGTCATCT
1 TTAGTAAGTTCTTCGAGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAATCCTTCGGGTCATCT
* *
3295495 ATAAGTCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGATCTTCGGGCAGGATGTTT
66 ATAAGTCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTA-GATGTTT
*
3295560 TCACATGATTTTCAAAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATCTTTTCTGAAAA
130 TCACATGATTTTC-AAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATATTTTCTGAAAA
* *
3295625 TTGATTTTTCTTGAAAAGTAAGAAATCAATTTCC-AA------A-
194 CTGATTTTTCTT-AAAAGTAAGAAAACAATTTCCAAAGTTTTTAC
* *
3295662 -T--T---TTCTT--A--C-TCAGTAAGTCTTTTGAGCACGTTGTTTAAATCCTTCGGGTCATCT
1 TTAGTAAGTTCTTCGAGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAATCCTTCGGGTCATCT
* * * *
3295716 ACAAATCTTTCT-AGCAAGGTGATAAGTCCTTCGGGCCACCCATAAGACCTTCGGGGTAAGATGT
66 ATAAGTCTTT-TGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTC-GGGT-AGATGT
*
3295780 TTTCACATGATTTTCGAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATATTTTCTGAAA
128 TTTCACATGATTTTCAAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATATTTTCTGAAA
* **
3295845 ACTGATTTTTCTTAAGAGTAAGAAAACGGTTTCCAAAGTTTCTTAC
193 ACTGATTTTTCTTAAAAGTAAGAAAACAATTTCCAAAGTTT-TTAC
3295891 TTAGT
1 TTAGT
3295896 TCGTCATTTG
Statistics
Matches: 407, Mismatches: 38, Indels: 49
0.82 0.08 0.10
Matches are distributed among these distances:
220 17 0.04
221 148 0.36
222 25 0.06
223 1 0.00
224 1 0.00
226 5 0.01
228 1 0.00
229 1 0.00
230 1 0.00
231 1 0.00
232 1 0.00
233 1 0.00
239 45 0.11
240 139 0.34
241 20 0.05
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (237 bp):
TTAGTAAGTTCTTCGAGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAATCCTTCGGGTCATCT
ATAAGTCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGATGTTTT
CACATGATTTTCAAAAATGAGAAAGCGATTTCCAAAGTTTCTCATTTAAATATTTTCTGAAAACT
GATTTTTCTTAAAAGTAAGAAAACAATTTCCAAAGTTTTTAC
Found at i:3300651 original size:25 final size:23
Alignment explanation
Indices: 3300612--3300664 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 23
3300602 TTAAAATACT
3300612 TTTTTATTATATATTATATTAATTA
1 TTTTTATTATATATTA-ATTAA-TA
3300637 TTTTTATT-TATTATTAATTAATA
1 TTTTTATTATA-TATTAATTAATA
3300660 TTTTT
1 TTTTT
3300665 CCTGGTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 7 0.26
24 7 0.26
25 13 0.48
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTTATTATATATTAATTAATA
Found at i:3301821 original size:15 final size:15
Alignment explanation
Indices: 3301779--3301810 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3301769 CATTAATCTC
3301779 TTTAATA-TTTTTTA
1 TTTAATATTTTTTTA
3301793 TTTAATATTTTTTTA
1 TTTAATATTTTTTTA
3301808 TTT
1 TTT
3301811 TTCATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTAATATTTTTTTA
Found at i:3303750 original size:75 final size:75
Alignment explanation
Indices: 3303627--3303771 Score: 254
Period size: 75 Copynumber: 1.9 Consensus size: 75
3303617 TTTAAGATGT
* *
3303627 TTTTGTCTCTTAAGAAATAACACTTTTGTCCCAATAAAGATTATTTATAATAACATACACGTTTT
1 TTTTGTCTCTTAAGAAATAACACTTTTGTCCCAATAAAGATTATTTATAATAACAGACACATTTT
3303692 TGGATCAGTG
66 TGGATCAGTG
* *
3303702 TTTTGTCTCTTAAGAAATAACACTTTTGTCTCGATAAAGATTATTTATAATAACAGACACATTTT
1 TTTTGTCTCTTAAGAAATAACACTTTTGTCCCAATAAAGATTATTTATAATAACAGACACATTTT
3303767 TGGAT
66 TGGAT
3303772 GAGCTCCTTG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (75 bp):
TTTTGTCTCTTAAGAAATAACACTTTTGTCCCAATAAAGATTATTTATAATAACAGACACATTTT
TGGATCAGTG
Found at i:3306681 original size:231 final size:231
Alignment explanation
Indices: 3306269--3306702 Score: 640
Period size: 231 Copynumber: 1.9 Consensus size: 231
3306259 AACTCGAGAT
* * * * * *
3306269 TGGATTTCAATTTCACAATGGAGGATATCTAACTCAAAGCTCAACTTCACAGCGAATGAGCCATC
1 TGGATTTCAACTTCACAACGAAGGACATCCAACTCAAAGCTCAACTTCACAGCGAATAAGCCATC
* *
3306334 CACGATTTCAACTTCACGACGAAAGATATCGTACCCAAAAGATTGACCTAACTTCACGACGAATG
66 CACGATTTCAACTTCACGACGAAAGATATCGTACCCAAAAGATTGACCCAACTTCACGAAGAATG
* * * *
3306399 AGTCATTTGCTACACAAAAATGAAAAACCAATTTTATTCAGAGTCAATTTCAACTTCACAGCGAA
131 AGCCATCTGCTACACAAAAATGAAAAACCAATTTCATTCAGAGTCAATTTCAACTTCACAACG-A
3306464 AG-ATATTGAACTCAAAAGTGATGCAATTTACAAGAG
195 AGTATATTGAACTCAAAAGTGATGCAATTTACAAGAG
* * *
3306500 TGGATTTCAACTTCACAACGAAGGACATCCAATTCAAAGCTCAACTTCACAGTGAATAATCCATC
1 TGGATTTCAACTTCACAACGAAGGACATCCAACTCAAAGCTCAACTTCACAGCGAATAAGCCATC
* *
3306565 CACGATTTCAACTTCACGATGAAGGATATCGTACCCAAAAGATTGACCCAACTTCACGAAGAATG
66 CACGATTTCAACTTCACGACGAAAGATATCGTACCCAAAAGATTGACCCAACTTCACGAAGAATG
* * *
3306630 AGCCATCTG-TGACACAACAATGAAAAACCAGTTTCATTCAG-GTCAAATTTCAGCTTCACAACG
131 AGCCATCTGCT-ACACAAAAATGAAAAACCAATTTCATTCAGAGTC-AATTTCAACTTCACAACG
3306693 AAGTATATTG
194 AAGTATATTG
3306703 GGCTAGAAGA
Statistics
Matches: 180, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
230 7 0.04
231 173 0.96
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (231 bp):
TGGATTTCAACTTCACAACGAAGGACATCCAACTCAAAGCTCAACTTCACAGCGAATAAGCCATC
CACGATTTCAACTTCACGACGAAAGATATCGTACCCAAAAGATTGACCCAACTTCACGAAGAATG
AGCCATCTGCTACACAAAAATGAAAAACCAATTTCATTCAGAGTCAATTTCAACTTCACAACGAA
GTATATTGAACTCAAAAGTGATGCAATTTACAAGAG
Found at i:3308547 original size:20 final size:19
Alignment explanation
Indices: 3308522--3308588 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
3308512 ATATCTTCAA
3308522 TATTTTTTATTTAATTTTTT
1 TATTTTTTATTT-ATTTTTT
3308542 TATTTTTTCA-TT-TTTTTT
1 TATTTTTT-ATTTATTTTTT
*
3308560 CATTTTTT-TTTCATTTTTT
1 TATTTTTTATTT-ATTTTTT
*
3308579 CTATTATTTA
1 -TATTTTTTA
3308589 ACATGAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
17 2 0.05
18 13 0.34
19 6 0.16
20 16 0.42
21 1 0.03
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (19 bp):
TATTTTTTATTTATTTTTT
Found at i:3308558 original size:11 final size:11
Alignment explanation
Indices: 3308544--3308578 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
3308534 AATTTTTTTA
3308544 TTTTTTCA-TT
1 TTTTTTCATTT
3308554 TTTTTTCATTT
1 TTTTTTCATTT
3308565 TTTTTTCATTT
1 TTTTTTCATTT
3308576 TTT
1 TTT
3308579 CTATTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTCATTT
Found at i:3309107 original size:16 final size:16
Alignment explanation
Indices: 3309086--3309119 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3309076 TGGTGTAAAG
*
3309086 AAAATGGAAAGGATTA
1 AAAATGAAAAGGATTA
*
3309102 AAAATGAAAAGGCTTA
1 AAAATGAAAAGGATTA
3309118 AA
1 AA
3309120 TTGATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.21, T:0.18
Consensus pattern (16 bp):
AAAATGAAAAGGATTA
Found at i:3317261 original size:23 final size:24
Alignment explanation
Indices: 3317215--3317261 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
3317205 AATTCTACTA
3317215 AAGGCAAAGGCTTTTCTAATGATC
1 AAGGCAAAGGCTTTTCTAATGATC
* *
3317239 AAGGCAAATGC-TTTGTAATGATC
1 AAGGCAAAGGCTTTTCTAATGATC
3317262 CCTTGAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (24 bp):
AAGGCAAAGGCTTTTCTAATGATC
Found at i:3326375 original size:44 final size:44
Alignment explanation
Indices: 3326238--3326646 Score: 611
Period size: 44 Copynumber: 9.2 Consensus size: 44
3326228 TATTCATTAT
* * *** *
3326238 TTTCATTTGTGGCGTCCTTTCATAATTTTAATGCACCATTATGCA
1 TTTCATTTATGGCATCCTTTCAT-GCCTTAATGCACCGTTATGCA
*
3326283 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGTA
1 TTTCATTTATGGCATCCTTTCATGCC-TTAATGCACCGTTATGCA
* *
3326328 TTTCATTTATGGCATCCTTTTATACCTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
*
3326372 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACTGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
* * *
3326416 TTTCATTTATAGCATCGTTTCATGCCTTAATGCACCGTTATACA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
* * *
3326460 TTTCATTTATGGCATCTTTTCTTGCGTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
*
3326504 TTTCATTTATGACATCCTTTCATGCCTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
* **
3326548 TTTCATTTATGGCATCCTTTCATGCCTTAATGCATCGTTATGTG
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
*
3326592 TTTCATTTATGGCATCATTTCATGCCTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
3326636 TTTCATTTATG
1 TTTCATTTATG
3326647 AATTCGTTTT
Statistics
Matches: 329, Mismatches: 34, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
44 268 0.81
45 61 0.19
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (44 bp):
TTTCATTTATGGCATCCTTTCATGCCTTAATGCACCGTTATGCA
Found at i:3331022 original size:17 final size:17
Alignment explanation
Indices: 3331000--3331043 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
3330990 GAAATATTGT
3331000 AAAGTATGGTGTGCAGA
1 AAAGTATGGTGTGCAGA
3331017 AAAGTATGGTGTGCAGA
1 AAAGTATGGTGTGCAGA
*
3331034 AAAGTTTGGT
1 AAAGTATGGT
3331044 CGATGCAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.34, C:0.05, G:0.34, T:0.27
Consensus pattern (17 bp):
AAAGTATGGTGTGCAGA
Found at i:3331228 original size:30 final size:30
Alignment explanation
Indices: 3331194--3331256 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
3331184 GTTATTTTAT
*
3331194 GCTAAGAATGATTTGGTGCGCTATGCTTAG
1 GCTAAGAACGATTTGGTGCGCTATGCTTAG
3331224 GCTAAGAACGATTTGGTGCGCTATGCTTAG
1 GCTAAGAACGATTTGGTGCGCTATGCTTAG
3331254 GCT
1 GCT
3331257 GTCCGGCATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (30 bp):
GCTAAGAACGATTTGGTGCGCTATGCTTAG
Found at i:3335521 original size:15 final size:15
Alignment explanation
Indices: 3335489--3335544 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
3335479 TACCTACATT
**
3335489 ATCACCACCATGATC
1 ATCACCACCACCATC
*
3335504 ATCACCACCACCACC
1 ATCACCACCACCATC
**
3335519 ATCACCGTCACCATC
1 ATCACCACCACCATC
3335534 ATCACCACCAC
1 ATCACCACCAC
3335545 TTGACGTCGA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.32, C:0.50, G:0.04, T:0.14
Consensus pattern (15 bp):
ATCACCACCACCATC
Found at i:3339564 original size:20 final size:20
Alignment explanation
Indices: 3339536--3339574 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3339526 TTCCACCACA
*
3339536 TGTAACTATATGCTCCTAAG
1 TGTAACTATATGATCCTAAG
*
3339556 TGTATCTATATGATCCTAA
1 TGTAACTATATGATCCTAA
3339575 ATGGGCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (20 bp):
TGTAACTATATGATCCTAAG
Found at i:3349826 original size:20 final size:20
Alignment explanation
Indices: 3349797--3349839 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
3349787 ATACCACCAC
*
3349797 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
3349817 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
3349837 ATG
1 ATG
3349840 GGCTCTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:3350574 original size:17 final size:17
Alignment explanation
Indices: 3350515--3350574 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
3350505 ATATTTTTTA
3350515 TTTTATTTATAATATTATT
1 TTTTATTT-T-ATATTATT
*
3350534 TTTTA-TTTACATGTATT
1 TTTTATTTTATAT-TATT
3350551 TTTTATTTTATATTATT
1 TTTTATTTTATATTATT
*
3350568 TTGTATT
1 TTTTATT
3350575 ATGAATAGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
16 3 0.08
17 20 0.56
18 8 0.22
19 5 0.14
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTATTTTATATTATT
Found at i:3352762 original size:4 final size:4
Alignment explanation
Indices: 3352753--3352783 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
3352743 ATTCAATTGT
3352753 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
3352784 GGAGTTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:3354493 original size:182 final size:182
Alignment explanation
Indices: 3354186--3354677 Score: 736
Period size: 182 Copynumber: 2.7 Consensus size: 182
3354176 TGTCGGTTTA
* * * *
3354186 TGTCGATACTTTATAAAAATGTATCGATCCACATCAATATAATAGGAAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * *
3354251 GTCACGAAAAGACAAAAT-CGGTAAAGCGCTG-CCGGGTATATTGAAAGTGTCGATACTTTAATA
66 GTCTCTAAAAGAC-AAATCCGGTAAAGCGC-GACCGGATATATTGAAAGTGTCGATACTTTAATA
*
3354314 TAAGTATCGACACATTGTGAATTTAAAAGAGAATCAGTTTTAGCACCTATAAAG
129 TAAGTATCGACACATTGTGAATTTAAAAGAGAAGCAGTTTTAGCACCTATAAAG
* *
3354368 TGTCGATACTTTATAAATATGTATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * * *
3354433 ATCTCTAAAGGACAAATCCGGTATAGAGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
66 GTCTCTAAAAGACAAATCCGGTAAAGCGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
* *
3354498 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
131 AGTATCGACACATTGTGAATTTAAAAGAGAAGCAGTTTTAGCACCTATAAAG
* * *
3354550 TGTCGATACTTTATAAAAATGTATCGATCCATAATGATATAACAGGTAAAAATATGACAAAATCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * * * *
3354615 GTCTCTAAATGACAAAACCAGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTAATA
66 GTCTCTAAAAGACAAATCCGGTAAAGCGCGACCGGATATATTGAAAGTGTCGATACTTTAATA
3354678 AGTATGCGTA
Statistics
Matches: 279, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
181 5 0.02
182 274 0.98
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (182 bp):
TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
GTCTCTAAAAGACAAATCCGGTAAAGCGCGACCGGATATATTGAAAGTGTCGATACTTTAATATA
AGTATCGACACATTGTGAATTTAAAAGAGAAGCAGTTTTAGCACCTATAAAG
Found at i:3357071 original size:21 final size:21
Alignment explanation
Indices: 3357045--3357085 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3357035 AAGACAATCA
3357045 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAT
*
3357066 AGAGTCGAAGAGACACTTGA
1 AGAGTCGAAGAGAAACTTGA
3357086 GAGGCATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAT
Found at i:3358946 original size:19 final size:19
Alignment explanation
Indices: 3358922--3358970 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
3358912 AATGTAGGGT
3358922 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
3358941 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
3358960 TAATTTTGTAT
1 TAATTTTGTAT
3358971 GTGGATGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:3359805 original size:202 final size:201
Alignment explanation
Indices: 3359321--3360259 Score: 1251
Period size: 202 Copynumber: 4.7 Consensus size: 201
3359311 GTAAGCATAT
* * *
3359321 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCAAAACACATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATA
** * * * *
3359386 GGTAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGT
66 GGTAATTTTACAATGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
* ** * * ** ***
3359451 ATCAACACTTTT-TCATAATGTGTCGATACTTTTTGTCTAGAATTAATGCCC-AAAATTATGAAC
131 ATCGACACTTTTGGAAT-TTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGGTGAAC
*
3359514 GCATAAA
195 GCAAAAA
* ** *
3359521 GTGTCCATACATTTATTGAAAGTGTCGATCCCAGAAACATCGAAACCCATAAATATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATA
* *
3359586 GGTAAATTTACAATGTAACCGGTATAACTAAACCGGTTTTATGAGAGAATAGGTCTACATAATGT
66 GGTAATTTTACAATGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
* * *
3359651 ATCGACATTTTTGGAATTTGTGTCGATA-TTGTTTTTCCAGAAGGAATGCCCAAAAAGGGTGCAC
131 ATCGACACTTTTGGAATTTGTGTCGATACTT-TTTGTCCAGAAGGAATGCCCAAAAAGGGTGAAC
3359715 GCAAAAA
195 GCAAAAA
* * *
3359722 GTGTCGATACATTTATAAACAAGTTTCGATCCTAGAAACATCGAAACCCATAAATATAATGTAAT
1 GTGTCGATACATTTATAAA-AAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAAT
* * * * *
3359787 ATGTAAATTTACAATGTAACCGATATAACTAAACCGGTTTTATGAGAGAATAGGTCTACATAATA
65 AGGTAATTTTACAATGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATG
* * *
3359852 TATCGACACTTCTGGAATTTGTGTCGATACTGTTTGTCCAGAAGGAATGCCCAAAAAGGGTGCAC
130 TATCGACACTTTTGGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGGTGAAC
3359917 GCAAAAA
195 GCAAAAA
* *
3359924 GTGTTGATACATTTATAAACAAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAAT
1 GTGTCGATACATTTATAAA-AAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAAT
* *
3359989 AGGTAATTTTTCAATGTAACCGGTAT-ACATATACCGGTTTTATGAGAAAATAGGTCTACA-ATA
65 AGGTAATTTTACAATGTAACCGGTATAAC-TATACCGGTTTTATGAGAGAATAGGTCTACATA-A
* * * * *
3360052 TGTATCGACACTTGTGTAATTTGTGTCAATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGCGA
128 TGTATCGACACTTTTGGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGGTGA
**
3360117 AC-CATTAA
193 ACGCAAAAA
* *
3360125 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATA
** * * * *
3360190 GGTAATTTTTTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
66 GGTAATTTTACAATGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
3360255 ATCGA
131 ATCGA
3360260 TACCAGAAAC
Statistics
Matches: 659, Mismatches: 71, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
199 2 0.00
200 254 0.39
201 59 0.09
202 343 0.52
203 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (201 bp):
GTGTCGATACATTTATAAAAAGTGTCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTACAATGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
ATCGACACTTTTGGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGGTGAACG
CAAAAA
Found at i:3360337 original size:107 final size:107
Alignment explanation
Indices: 3360149--3360366 Score: 312
Period size: 107 Copynumber: 2.0 Consensus size: 107
3360139 ATAAAAAGTG
* * * * **
3360149 TCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATAGGTAATTTTTTAATATAACCGGTA
1 TCGATACCAAAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCGGTA
* *
3360214 TAAATATACCGATTTTATGTGAGAATAGGTCTACATA-ATGTA
66 TAAATATACCGATTTTATGAGAGAAAAGGTCTACA-ACATGTA
* *
3360256 TCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACTGGTA
1 TCGATACCAAAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCGGTA
* *
3360321 TAACTATACCGGTTTTATGAGAGAAAAGGTCTACAACATGTA
66 TAAATATACCGATTTTATGAGAGAAAAGGTCTACAACATGTA
3360363 TCGA
1 TCGA
3360367 CACTTGTGGA
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
106 1 0.01
107 97 0.99
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (107 bp):
TCGATACCAAAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCGGTA
TAAATATACCGATTTTATGAGAGAAAAGGTCTACAACATGTA
Found at i:3360500 original size:307 final size:307
Alignment explanation
Indices: 3359946--3360551 Score: 916
Period size: 307 Copynumber: 2.0 Consensus size: 307
3359936 TTATAAACAA
* * * * *
3359946 GTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTTCAATGTAACCG
1 GTATCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCG
* *
3360011 GTATACATATACCGGTTTTATGAGAAAATAGGTCTACAATATGTATCGACACTTGTGTAATTTGT
66 GTATACATATACCGGTTTTATGAGAAAATAGGTCTACAACATGTATCGACACTTGTGGAATTTGT
*
3360076 GTCAATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGCGAACCATTAAGTGTCGATACATTTAT
131 GTCAATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGCGAACCATAAAGTGTCGATACATTTAT
* * **
3360141 AAAAAGTGTCGATCCCAAAAACATCGAAACTCATAATTATAATGTAATAGGTAATTTTTTAATAT
196 AAAAAGTGTCAATCCCAAAAACATCGAAACTCATAATTATAATGTAATAGGTAAATTTCCAATAT
* *
3360206 AACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAAT
261 AACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCTACATAAT
*
3360253 GTATCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACTG
1 GTATCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCG
3360318 GTATA-ACTATACCGGTTTTATGAGAGAAA-AGGTCTACAACATGTATCGACACTTGTGGAATTT
66 GTATACA-TATACCGGTTTTATGAGA-AAATAGGTCTACAACATGTATCGACACTTGTGGAATTT
* * * *
3360381 GTGTCGATACTTTTTGTCCAGAAGGAATG-CC-AAAAGGGTTGCACGCATAAAGTGTCGATACAT
129 GTGTCAATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGG-CGAAC-CATAAAGTGTCGATACAT
* *
3360444 TTTTAAAATGTGTCAATCCCAAAAACATCGAAAC-CGATAATTATAATGTAATAGGTAAATTTCC
192 TTATAAAAAGTGTCAATCCCAAAAACATCGAAACTC-ATAATTATAATGTAATAGGTAAATTTCC
* * *
3360508 AATGTAACTGGTATAAATATATCGATTTTATGAGAAAATAGGTC
256 AATATAACCGGTATAAATATACCGATTTTATGAGAAAATAGGTC
3360552 ATCATATAGT
Statistics
Matches: 270, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
305 7 0.03
306 7 0.03
307 253 0.94
308 3 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (307 bp):
GTATCGATACCAGAAACATCGAAACCCATAAATATAATGTAATAGGTAAATTTACAATATAACCG
GTATACATATACCGGTTTTATGAGAAAATAGGTCTACAACATGTATCGACACTTGTGGAATTTGT
GTCAATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGCGAACCATAAAGTGTCGATACATTTAT
AAAAAGTGTCAATCCCAAAAACATCGAAACTCATAATTATAATGTAATAGGTAAATTTCCAATAT
AACCGGTATAAATATACCGATTTTATGAGAAAATAGGTCTACATAAT
Found at i:3362073 original size:12 final size:12
Alignment explanation
Indices: 3362033--3362072 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
3362023 GTCAATGAAT
*
3362033 ATGAAGATGACG
1 ATGAAGATGATG
*
3362045 ATGAAGATAATG
1 ATGAAGATGATG
*
3362057 ATGATGATGATG
1 ATGAAGATGATG
3362069 ATGA
1 ATGA
3362073 TCCAAACAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (12 bp):
ATGAAGATGATG
Done.