Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008245.1 Hibiscus syriacus cultivar Beakdansim tig00110895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6601124
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 33
Found at i:6044970 original size:19 final size:19
Alignment explanation
Indices: 6044948--6045010 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
6044938 GCGACCAGAC
6044948 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6044967 AATCGCAACCGCGAAATAAA
1 AATCGCAA-CGCGAAATGAA
6044987 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
6045006 AATCG
1 AATCG
6045011 TAATACGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 23 0.56
20 18 0.44
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:6044981 original size:20 final size:19
Alignment explanation
Indices: 6044853--6045010 Score: 111
Period size: 20 Copynumber: 8.7 Consensus size: 19
6044843 TCTTTTGGTT
*
6044853 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
* *
6044872 GATAATTAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
6044892 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
* *
6044910 G--A-GAGAATCGCAATGC
1 GAAATGAAAATCGCAACGC
** *
6044926 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
6044944 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6044959 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
6044979 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6044998 GAAATGAAAATCG
1 GAAATGAAAATCG
6045011 TAATACGATT
Statistics
Matches: 109, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
14 19 0.17
15 3 0.03
16 2 0.02
17 1 0.01
18 4 0.04
19 35 0.32
20 43 0.39
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6045661 original size:20 final size:20
Alignment explanation
Indices: 6045638--6045725 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
6045628 TAGAATCACG
* *
6045638 TTGCGAAAGTCAGTATCTCA
1 TTGCGATAGTCAGTATCGCA
* *
6045658 TTGCGATTTTGT-ATTATCGCA
1 TTGCGA--TAGTCAGTATCGCA
* *
6045679 TTGCGATAGTAAGTATTGCA
1 TTGCGATAGTCAGTATCGCA
6045699 TTGCGATAGTCAGTATCGCA
1 TTGCGATAGTCAGTATCGCA
6045719 TTGCGAT
1 TTGCGAT
6045726 TTTCCCAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.05
20 38 0.68
21 13 0.23
22 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAGTATCGCA
Found at i:6045836 original size:21 final size:21
Alignment explanation
Indices: 6045796--6045836 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6045786 ACTGTATACC
**
6045796 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
6045817 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
6045837 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:6046607 original size:230 final size:230
Alignment explanation
Indices: 6046204--6046647 Score: 816
Period size: 230 Copynumber: 1.9 Consensus size: 230
6046194 CACACACGAA
* *
6046204 CACTTATTAGAATTGTAATGACAAACATTAGCTGTGGGTACTCGTTCCTTAAATGAGCTCCTTGA
1 CACTTATTAGAATTGTAATGAAAAACATTAGCTGTGGGTACTCGTTCCTTAAACGAGCTCCTTGA
* *
6046269 GTCAGAACTCCTCATATCAGATTCATCCACACCTGAGATCGACTTATCGAACCTGTACCAACACC
66 GTCAAAACTCCTCATATCAGATTCATCCACACCTGAGAACGACTTATCGAACCTGTACCAACACC
*
6046334 TATTCACAAGGTGACAATTCTTGCCACACAACTGGCACTGCATCTTGACACGCCCTCAACCACGA
131 TATTCACAAGGTGACAATTCTTGCCACACAACTGGCACTGCATCTTGACAAGCCCTCAACCACGA
6046399 CCAGCTTGACCATTATAGGTAACTTGACACCTATT
196 CCAGCTTGACCATTATAGGTAACTTGACACCTATT
6046434 CACTTATTAGAATTGTAATGAAAAACATTAGCTGTGGGTACTCGTTCCTTAAACGAGCTCCTTGA
1 CACTTATTAGAATTGTAATGAAAAACATTAGCTGTGGGTACTCGTTCCTTAAACGAGCTCCTTGA
6046499 GTCAAAACTCCTCATATCAGATTCATCCACACCTGAGAACGACTTATCGAACCTGTACCAACACC
66 GTCAAAACTCCTCATATCAGATTCATCCACACCTGAGAACGACTTATCGAACCTGTACCAACACC
* *
6046564 TATTCACAAGGTGACAATTCTTGCCACACAACTGGTACTGCATCTTTACAAGCCCTCAACCACGA
131 TATTCACAAGGTGACAATTCTTGCCACACAACTGGCACTGCATCTTGACAAGCCCTCAACCACGA
*
6046629 CCAGCTTGATCATTATAGG
196 CCAGCTTGACCATTATAGG
6046648 CAACCTGTCT
Statistics
Matches: 206, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
230 206 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (230 bp):
CACTTATTAGAATTGTAATGAAAAACATTAGCTGTGGGTACTCGTTCCTTAAACGAGCTCCTTGA
GTCAAAACTCCTCATATCAGATTCATCCACACCTGAGAACGACTTATCGAACCTGTACCAACACC
TATTCACAAGGTGACAATTCTTGCCACACAACTGGCACTGCATCTTGACAAGCCCTCAACCACGA
CCAGCTTGACCATTATAGGTAACTTGACACCTATT
Found at i:6049837 original size:21 final size:21
Alignment explanation
Indices: 6049811--6049877 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
6049801 TTTAATTTGA
*
6049811 TATAATTTAATCATTTTATTT
1 TATAATATAATCATTTTATTT
* * * *
6049832 TATAATGTCATCAGTTAATTT
1 TATAATATAATCATTTTATTT
6049853 ATATAATATATATCATTATTATTT
1 -TATAATATA-ATCATT-TTATTT
6049877 T
1 T
6049878 TATTAAAATA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
21 17 0.49
22 7 0.20
23 6 0.17
24 5 0.14
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (21 bp):
TATAATATAATCATTTTATTT
Found at i:6051456 original size:62 final size:61
Alignment explanation
Indices: 6051326--6051457 Score: 135
Period size: 62 Copynumber: 2.1 Consensus size: 61
6051316 AATTGTCAAC
* * *
6051326 TAAAGAAATTAAATAATAAAAACAATTTGAACAAACTAAAAAACAAAAAAATGATACAACTAA
1 TAAA-AAACTAAATAATAAAAACAATTCGAACAAACTAAAAAACAAAAAAATGAAACAAC-AA
* * *
6051389 AAAAAAACTAAATAATAAAAATAATTCGAAC-AATTAAATAATACAAAAATTAA-GAAACAA-AA
1 TAAAAAACTAAATAATAAAAACAATTCGAACAAACTAAA-AA-ACAAAAA--AATGAAACAACAA
6051451 TAAAAAA
1 TAAAAAA
6051458 GTCCATAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
61 6 0.10
62 34 0.59
63 10 0.17
64 6 0.10
65 2 0.03
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.19
Consensus pattern (61 bp):
TAAAAAACTAAATAATAAAAACAATTCGAACAAACTAAAAAACAAAAAAATGAAACAACAA
Found at i:6052647 original size:20 final size:20
Alignment explanation
Indices: 6052624--6052664 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6052614 ATAATATTCT
*
6052624 AATTATATAATGATAATTAA
1 AATTATATAATAATAATTAA
*
6052644 AATTTTATAATAATAATTAA
1 AATTATATAATAATAATTAA
6052664 A
1 A
6052665 TACATACCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTATATAATAATAATTAA
Found at i:6053549 original size:45 final size:45
Alignment explanation
Indices: 6053451--6053554 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
6053441 TGCACTAAGC
* * *
6053451 GTGCATCGATACATAAAATGCATTCGATGTTTCAAAATATCTAGA
1 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATATCCAGA
* **
6053496 GTGAATCGATGCATAAAATGCATTCAATG-TTCAATTTAATCCATG-
1 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAAT-ATCCA-GA
6053541 GTGCATCGATGCAT
1 GTGCATCGATGCAT
6053555 GGATTGGTGC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 6 0.12
45 43 0.86
46 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (45 bp):
GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATATCCAGA
Found at i:6056565 original size:10 final size:9
Alignment explanation
Indices: 6056530--6056628 Score: 81
Period size: 10 Copynumber: 10.3 Consensus size: 9
6056520 GCTGCTGGAA
*
6056530 ACCGGTTTA
1 ACCGGTTTG
*
6056539 ACCGGTTTTCA
1 ACCGG-TTT-G
6056550 ACCGGTTCTG
1 ACCGGTT-TG
6056560 ACCGGTTTG
1 ACCGGTTTG
*
6056569 ACCGGTTTCA
1 ACCGGTTT-G
*
6056579 ACCGGTTCG
1 ACCGGTTTG
*
6056588 AACCAGTTTG
1 -ACCGGTTTG
*
6056598 ACCGGTCTG
1 ACCGGTTTG
6056607 AACCGGTTTG
1 -ACCGGTTTG
*
6056617 ACCGGTCTG
1 ACCGGTTTG
6056626 ACC
1 ACC
6056629 CGACCCGACC
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
9 33 0.45
10 34 0.46
11 7 0.09
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:6056574 original size:19 final size:19
Alignment explanation
Indices: 6056531--6056628 Score: 78
Period size: 19 Copynumber: 5.1 Consensus size: 19
6056521 CTGCTGGAAA
* * *
6056531 CCGGTTTAACCGGTTTTCAA
1 CCGGTTTGACCGGTTCT-GA
6056551 CCGGTTCTGACCGGTT-TGA
1 CCGGTT-TGACCGGTTCTGA
*
6056570 CCGGTTTCAACCGGTTC-GAA
1 CCGGTTT-GACCGGTTCTG-A
*
6056590 CCAGTTTGACCGG-TCTGAA
1 CCGGTTTGACCGGTTCTG-A
6056609 CCGGTTTGACCGG-TCTGA
1 CCGGTTTGACCGGTTCTGA
6056627 CC
1 CC
6056629 CGACCCGACC
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
18 6 0.09
19 39 0.58
20 14 0.21
21 8 0.12
ACGTcount: A:0.16, C:0.29, G:0.27, T:0.29
Consensus pattern (19 bp):
CCGGTTTGACCGGTTCTGA
Found at i:6056596 original size:29 final size:28
Alignment explanation
Indices: 6056530--6056628 Score: 117
Period size: 29 Copynumber: 3.4 Consensus size: 28
6056520 GCTGCTGGAA
*
6056530 ACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTGACCGG-TTTCAACCGGTT-TG
*
6056560 ACCGGTTTGACCGGTTTCAACCGGTTCG
1 ACCGGTTTGACCGGTTTCAACCGGTTTG
* * *
6056588 AACCAGTTTGACCGGTCTGAACCGGTTTG
1 -ACCGGTTTGACCGGTTTCAACCGGTTTG
*
6056617 ACCGGTCTGACC
1 ACCGGTTTGACC
6056629 CGACCCGACC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 11 0.18
29 36 0.60
30 13 0.22
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (28 bp):
ACCGGTTTGACCGGTTTCAACCGGTTTG
Found at i:6056646 original size:17 final size:17
Alignment explanation
Indices: 6056624--6056662 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
6056614 TTGACCGGTC
6056624 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
*
6056641 TGACCCGACCCGACCTT
1 TGACCCGACCCGACCGT
6056658 TGACC
1 TGACC
6056663 GTTGACCGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.46, G:0.21, T:0.15
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:6063840 original size:9 final size:9
Alignment explanation
Indices: 6063826--6063957 Score: 66
Period size: 9 Copynumber: 13.8 Consensus size: 9
6063816 GGCTGCTGGA
6063826 AACCGGTTT
1 AACCGGTTT
6063835 AACCGGTTCT
1 AACCGGTT-T
*
6063845 GACCGGTTTT
1 AACCGG-TTT
6063855 CAACCGGTTCT
1 -AACCGGTT-T
*
6063866 GACCGGTTT
1 AACCGGTTT
* *
6063875 GACCGGTTCG
1 AACCGGTT-T
**
6063885 AACCAATTT
1 AACCGGTTT
* *
6063894 GACCGGTCTG
1 AACCGGT-TT
6063904 AACCGGTTT
1 AACCGGTTT
* * *
6063913 GACAGGTCTG
1 AACCGGT-TT
6063923 AACCGGTTT
1 AACCGGTTT
* *
6063932 GACCGGTCTG
1 AACCGGT-TT
6063942 AACCGGTTT
1 AACCGGTTT
*
6063951 GACCGGT
1 AACCGGT
6063958 CTGACCCGAC
Statistics
Matches: 90, Mismatches: 25, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
9 41 0.46
10 41 0.46
11 8 0.09
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (9 bp):
AACCGGTTT
Found at i:6063851 original size:19 final size:19
Alignment explanation
Indices: 6063826--6063961 Score: 161
Period size: 19 Copynumber: 7.1 Consensus size: 19
6063816 GGCTGCTGGA
*
6063826 AACCGGTTTAACCGGTTCTG
1 AACCGGTTTGACCGG-TCTG
*
6063846 -ACCGGTTTTCAACCGGTTCTG
1 AACCGG-TTT-GACCGG-TCTG
6063867 -ACCGGTTTGACCGGT-TCG
1 AACCGGTTTGACCGGTCT-G
**
6063885 AACCAATTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
6063904 AACCGGTTTGACAGGTCTG
1 AACCGGTTTGACCGGTCTG
6063923 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
6063942 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
6063961 A
1 A
6063962 CCCGACTCGA
Statistics
Matches: 104, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.01
18 2 0.02
19 78 0.75
20 7 0.07
21 16 0.15
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:6063861 original size:21 final size:20
Alignment explanation
Indices: 6063827--6063883 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
6063817 GCTGCTGGAA
6063827 ACCGG-TTTAACCGGTTCTG
1 ACCGGTTTTAACCGGTTCTG
6063846 ACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTT-AACCGGTTCTG
*
6063867 ACCGG-TTTGACCGGTTC
1 ACCGGTTTTAACCGGTTC
6063884 GAACCAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 13 0.37
20 6 0.17
21 16 0.46
ACGTcount: A:0.14, C:0.28, G:0.26, T:0.32
Consensus pattern (20 bp):
ACCGGTTTTAACCGGTTCTG
Found at i:6063862 original size:30 final size:30
Alignment explanation
Indices: 6063826--6063882 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6063816 GGCTGCTGGA
6063826 AACCGGTT-TAACCGGTTCTGACCGGTTTTC
1 AACCGGTTCTAACCGGTT-TGACCGGTTTTC
*
6063856 AACCGGTTCTGACCGGTTTGACCGGTT
1 AACCGGTTCTAACCGGTTTGACCGGTT
6063883 CGAACCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (30 bp):
AACCGGTTCTAACCGGTTTGACCGGTTTTC
Found at i:6063981 original size:17 final size:17
Alignment explanation
Indices: 6063959--6064014 Score: 103
Period size: 17 Copynumber: 3.3 Consensus size: 17
6063949 TTGACCGGTC
*
6063959 TGACCCGACTCGACCGT
1 TGACCCGACCCGACCGT
6063976 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
6063993 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
6064010 TGACC
1 TGACC
6064015 GTTGACCGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.18, C:0.45, G:0.23, T:0.14
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:6073178 original size:21 final size:21
Alignment explanation
Indices: 6073154--6073201 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
6073144 TTGACTTGTC
*
6073154 AAAGTAGTAAATGAGAGATTA
1 AAAGCAGTAAATGAGAGATTA
*
6073175 AAAGCATTAAATGAGAGATTA
1 AAAGCAGTAAATGAGAGATTA
6073196 AAAGCA
1 AAAGCA
6073202 TTGGATGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.21
Consensus pattern (21 bp):
AAAGCAGTAAATGAGAGATTA
Found at i:6073210 original size:21 final size:21
Alignment explanation
Indices: 6073161--6073203 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
6073151 GTCAAAGTAG
6073161 TAAATGAGAGATTAAAAGCAT
1 TAAATGAGAGATTAAAAGCAT
6073182 TAAATGAGAGATTAAAAGCAT
1 TAAATGAGAGATTAAAAGCAT
6073203 T
1 T
6073204 GGATGAGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.05, G:0.19, T:0.26
Consensus pattern (21 bp):
TAAATGAGAGATTAAAAGCAT
Found at i:6082051 original size:2 final size:2
Alignment explanation
Indices: 6082044--6082068 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6082034 TCAGCATAAA
6082044 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
6082069 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:6086294 original size:17 final size:17
Alignment explanation
Indices: 6086272--6086325 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
6086262 AATGTTAATA
6086272 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
6086289 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
6086306 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
6086323 TTT
1 TTT
6086326 TTATAATGTA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:6087886 original size:21 final size:21
Alignment explanation
Indices: 6087856--6087903 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
6087846 GCAGGGGTAC
* *
6087856 ATGCCCAGCCCTCCACTTTAT
1 ATGCCAAGCCCACCACTTTAT
*
6087877 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTTAT
6087898 ATGCCA
1 ATGCCA
6087904 TCTCCGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTTAT
Found at i:6087937 original size:21 final size:21
Alignment explanation
Indices: 6087907--6088000 Score: 136
Period size: 21 Copynumber: 4.5 Consensus size: 21
6087897 TATGCCATCT
*
6087907 CCGCATGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGC
6087928 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGC
*
6087949 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCGAGC
* *
6087970 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATTCCGAGC
6087991 CCGCAGGGTT
1 CCGCAGGGTT
6088001 TTATACCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
20 2 0.03
21 64 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCGAGC
Found at i:6088626 original size:34 final size:34
Alignment explanation
Indices: 6088521--6088627 Score: 142
Period size: 34 Copynumber: 3.1 Consensus size: 34
6088511 ATAAATGTTT
* *
6088521 TTAAAATACAAATTATATTATTTAAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCAAAATTTAAAA
* *
6088555 TAAAAATAAAAATAATATTATTCAAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCAAAATTTAAAA
* * * *
6088589 TTAAAATATAAATTATAGTATTCGAAATTTAACA
1 TTAAAATAAAAATTATATTATTCAAAATTTAAAA
6088623 TTAAA
1 TTAAA
6088628 TTTCAACTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (34 bp):
TTAAAATAAAAATTATATTATTCAAAATTTAAAA
Found at i:6089211 original size:128 final size:128
Alignment explanation
Indices: 6088992--6089598 Score: 1063
Period size: 128 Copynumber: 4.7 Consensus size: 128
6088982 CTGATATATT
* * *
6088992 TAGTGTCCCCGAGGGATATGAGTGACATAATATGACAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
6089057 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTACCCTAAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATATGAA
*
6089120 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGCTAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * *
6089185 TGAAGGCGTGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATATGAA
6089248 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
6089313 GGAAGGCGCCCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATAT-ATC
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATATGA-A
6089376 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
6089441 GGAAGGCGCGCCCCCGGGAACGCGCTTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATATGAA
*
6089504 TAGTATCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
6089569 GGAAGGCGCGCCCCCGAGAACGCGCCTTCA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCA
6089599 TGTGAATAGT
Statistics
Matches: 455, Mismatches: 22, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
127 1 0.00
128 453 1.00
129 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (128 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTAAGAAATAATAGGTACTGATATGAA
Found at i:6089692 original size:8 final size:8
Alignment explanation
Indices: 6089679--6089719 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
6089669 TCACAAGCTT
6089679 TCAAATTC
1 TCAAATTC
6089687 TCAAATTC
1 TCAAATTC
* *
6089695 CCAAACTC
1 TCAAATTC
6089703 T-AAATTC
1 TCAAATTC
6089710 TCAAATTC
1 TCAAATTC
6089718 TC
1 TC
6089720 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:6091185 original size:18 final size:18
Alignment explanation
Indices: 6091159--6091200 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
6091149 AAATATGTAA
*
6091159 TTATACTAATTTATTAAC
1 TTATGCTAATTTATTAAC
6091177 TTATGCTAATTTATTAAC
1 TTATGCTAATTTATTAAC
6091195 TTATGC
1 TTATGC
6091201 ATCAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATGCTAATTTATTAAC
Found at i:6093078 original size:26 final size:26
Alignment explanation
Indices: 6093042--6093102 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
6093032 AGAAATTTAA
* * *
6093042 TTAATTCTTTTAGAAAGTTCGATGAT
1 TTAATTATTTTAGAAAATTCGAGGAT
* *
6093068 TTAATTATTTTATAAAATTTGAGGAT
1 TTAATTATTTTAGAAAATTCGAGGAT
*
6093094 TTATTTATT
1 TTAATTATT
6093103 CTTTAAAGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52
Consensus pattern (26 bp):
TTAATTATTTTAGAAAATTCGAGGAT
Found at i:6093161 original size:11 final size:11
Alignment explanation
Indices: 6093145--6093187 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
6093135 TAAAATATTA
6093145 ATTTATAAATT
1 ATTTATAAATT
6093156 ATTTATAAA-T
1 ATTTATAAATT
*
6093166 ATTTATAAAGT
1 ATTTATAAATT
*
6093177 ATTTAAAAATT
1 ATTTATAAATT
6093188 TGATTTCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 10 0.34
11 19 0.66
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (11 bp):
ATTTATAAATT
Found at i:6093169 original size:21 final size:21
Alignment explanation
Indices: 6093145--6093186 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6093135 TAAAATATTA
* *
6093145 ATTTATAAATTATTTATAAAT
1 ATTTATAAAGTATTTAAAAAT
6093166 ATTTATAAAGTATTTAAAAAT
1 ATTTATAAAGTATTTAAAAAT
6093187 TTGATTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTTATAAAGTATTTAAAAAT
Found at i:6094002 original size:21 final size:22
Alignment explanation
Indices: 6093961--6094003 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
6093951 TTGTCATAGG
*
6093961 GGAACCGATTCCCCCGCTACAA
1 GGAACCGATTACCCCGCTACAA
*
6093983 GGAACCGA-TACCCTGCTACAA
1 GGAACCGATTACCCCGCTACAA
6094004 TATTGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.14
Consensus pattern (22 bp):
GGAACCGATTACCCCGCTACAA
Found at i:6094775 original size:22 final size:22
Alignment explanation
Indices: 6094750--6094810 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
6094740 GGCATATGAA
*
6094750 ATTTGTCTCGAAGGACCTA-TGT
1 ATTTGTCCCGAAGGACC-ACTGT
6094772 ATTTGTCCCGAAGGACCACTGT
1 ATTTGTCCCGAAGGACCACTGT
*
6094794 ATATGTCCCGAAGGACC
1 ATTTGTCCCGAAGGACC
6094811 GCGTAGACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (22 bp):
ATTTGTCCCGAAGGACCACTGT
Found at i:6098523 original size:30 final size:29
Alignment explanation
Indices: 6098453--6098533 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 29
6098443 TTGTAAATAA
* *
6098453 TATTTTAGTCATTTGAGTTTTTTTTATTT
1 TATTTTAGTCCTTTGAGTTTTTTTTATGT
6098482 TA-TTTAGGTCCTTTGAGTTTCTGTTTT-TGT
1 TATTTTA-GTCCTTTGAGTTT-T-TTTTATGT
* *
6098512 TATTTTTGTCCTTTAAGTTTTT
1 TATTTTAGTCCTTTGAGTTTTT
6098534 GAAATTACTG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 5 0.11
29 15 0.34
30 17 0.39
31 7 0.16
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.65
Consensus pattern (29 bp):
TATTTTAGTCCTTTGAGTTTTTTTTATGT
Found at i:6098649 original size:30 final size:30
Alignment explanation
Indices: 6098573--6098650 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 30
6098563 TGTTTTTGCC
*
6098573 ATTTTAGTCTTTTAAATTTCATCTTGTGAT
1 ATTTTAGTCTTTTAAATTTCATATTGTGAT
* ** * *
6098603 A-TTTGGTCTTCAAAATTT-ATATTTTTACT
1 ATTTTAGTCTTTTAAATTTCATATTGTGA-T
6098632 ATTTTAGTCTTTTAAATTT
1 ATTTTAGTCTTTTAAATTT
6098651 TTGTTTGTGT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
28 6 0.16
29 16 0.43
30 15 0.41
ACGTcount: A:0.26, C:0.09, G:0.08, T:0.58
Consensus pattern (30 bp):
ATTTTAGTCTTTTAAATTTCATATTGTGAT
Found at i:6103282 original size:12 final size:12
Alignment explanation
Indices: 6103265--6103293 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
6103255 CCCCAGCACC
6103265 CACCAAGGTTTA
1 CACCAAGGTTTA
6103277 CACCAAGGTTTA
1 CACCAAGGTTTA
6103289 CACCA
1 CACCA
6103294 GAATTCAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.21
Consensus pattern (12 bp):
CACCAAGGTTTA
Found at i:6106713 original size:21 final size:23
Alignment explanation
Indices: 6106683--6106739 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 23
6106673 TAAATGACCA
*
6106683 TCATTATTTACATT-TACATT-T
1 TCATTCTTTACATTCTACATTCT
*
6106704 TCATTCTTT--ATTCTTCATTCT
1 TCATTCTTTACATTCTACATTCT
*
6106725 TTATTCTTTACATTC
1 TCATTCTTTACATTC
6106740 ATTTCATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.10
20 5 0.17
21 17 0.59
23 4 0.14
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (23 bp):
TCATTCTTTACATTCTACATTCT
Found at i:6106722 original size:14 final size:14
Alignment explanation
Indices: 6106703--6106732 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6106693 CATTTACATT
6106703 TTCATTCTTTATTC
1 TTCATTCTTTATTC
6106717 TTCATTCTTTATTC
1 TTCATTCTTTATTC
6106731 TT
1 TT
6106733 TACATTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCATTCTTTATTC
Found at i:6111533 original size:136 final size:136
Alignment explanation
Indices: 6111160--6111784 Score: 950
Period size: 136 Copynumber: 4.6 Consensus size: 136
6111150 GTGAACCAAC
*
6111160 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* **
6111225 GAAGAGCTTTTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGATGCCTCACTTGAGGG
66 GAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGGG
*
6111290 A-TCAA
131 ATTGAA
* * *
6111295 CATTTCCAGTGAAGAGTTCATAATGAGAAGAACT-ATCCGACAGAAGGAGAAGAAGTTCATAATG
1 -ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATG
* *
6111359 AGAAGAGCTTGTTTGACCTATCACTCGATTCACGGCATTTTGAATCAGTGACACCTCACTTGAGG
65 AGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGG
6111424 GATTGAA
130 GATTGAA
*
6111431 ATTTCCAATGGAGAGTTCATAATAAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* *
6111496 GAAGAGCTTGTTCGACCTATCACTCAATTCACGGCATTTCGAATCAGTGACACCTCGCTTGAGGG
66 GAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGGG
*
6111561 ATTGAC
131 ATTGAA
* * * *
6111567 ATTTCCAATTGAGAATTAATAATGAGAAGAACTCATCCGAAAGAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* ** *
6111632 GAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTTTAATCAGTGACACCTCGCTTGAGGG
66 GAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGGG
*
6111697 ATTGAC
131 ATTGAA
* * * * *
6111703 ATTTCTAATGGAGAATTCATAATGAGAAGAATTCATCCAACA-AGGGAGAAGAAGTTCATAATGT
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* *
6111767 GAAGAACTTGTTCAACCT
66 GAAGAGCTTGTTCGACCT
6111785 CAGATCAATA
Statistics
Matches: 450, Mismatches: 37, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
135 157 0.35
136 293 0.65
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (136 bp):
ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
GAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGGG
ATTGAA
Found at i:6111751 original size:271 final size:270
Alignment explanation
Indices: 6111158--6111784 Score: 986
Period size: 271 Copynumber: 2.3 Consensus size: 270
6111148 AGGTGAACCA
6111158 ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAC-AAGGGAGAAGAAGTTCATAAT
* * **
6111223 GAGAAGAGCTTTTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGATGCCTCACTTGAG
65 GAGAAGAGCTTGTTCGACCTATCACTCAATTCACGGCATTTCGAATCAGTGACACCTCACTTGAG
* * *
6111288 GGATCAACATTTCCAGTGAAGAGTTCATAATGAGAAGAACTATCCGACAGAAGGAGAAGAAGTTC
130 GGATCAACATTTCCAGTGAAGAATTAATAATGAGAAGAACTATCCGAAAGAAGGAGAAGAAGTTC
* *
6111353 ATAATGAGAAGAGCTTGTTTGACCTATCACTCGATTCACGGCATTTTGAATCAGTGACACCTCAC
195 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTCAC
6111418 TTGAGGGATTG
260 TTGAGGGATTG
* *
6111429 AAATTTCCAATGGAGAGTTCATAATAAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACA-AGGGAGAAGAAGTTCATAAT
*
6111494 GAGAAGAGCTTGTTCGACCTATCACTCAATTCACGGCATTTCGAATCAGTGACACCTCGCTTGAG
65 GAGAAGAGCTTGTTCGACCTATCACTCAATTCACGGCATTTCGAATCAGTGACACCTCACTTGAG
** * *
6111559 GGATTGACATTTCCAATTG-AGAATTAATAATGAGAAGAACTCATCCGAAAGAGGGAGAAGAAGT
130 GGATCAACATTTCC-AGTGAAGAATTAATAATGAGAAGAACT-ATCCGAAAGAAGGAGAAGAAGT
*
6111623 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTTTAATCAGTGACACCTC
193 TCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTC
*
6111688 GCTTGAGGGATTG
258 ACTTGAGGGATTG
* * * *
6111701 ACATTTCTAATGGAGAATTCATAATGAGAAGAATTCATCCAACAAGGGAGAAGAAGTTCATAATG
1 ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCATAATG
* * *
6111766 TGAAGAACTTGTTCAACCT
66 AGAAGAGCTTGTTCGACCT
6111785 CAGATCAATA
Statistics
Matches: 326, Mismatches: 27, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
270 1 0.00
271 190 0.58
272 135 0.41
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (270 bp):
ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCATAATG
AGAAGAGCTTGTTCGACCTATCACTCAATTCACGGCATTTCGAATCAGTGACACCTCACTTGAGG
GATCAACATTTCCAGTGAAGAATTAATAATGAGAAGAACTATCCGAAAGAAGGAGAAGAAGTTCA
TAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTCACT
TGAGGGATTG
Found at i:6112474 original size:45 final size:45
Alignment explanation
Indices: 6112410--6112501 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
6112400 AAATTTTTGG
6112410 GACCATTTGGTCCCAACGCCGCCGTGCGCCACCACGTCGGCCACC
1 GACCATTTGGTCCCAACGCCGCCGTGCGCCACCACGTCGGCCACC
6112455 GACCATTTGGTCCCAACGCCGCCGTGCGCCACCACGTCGGCCACC
1 GACCATTTGGTCCCAACGCCGCCGTGCGCCACCACGTCGGCCACC
6112500 GA
1 GA
6112502 GGATCGTTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.16, C:0.46, G:0.25, T:0.13
Consensus pattern (45 bp):
GACCATTTGGTCCCAACGCCGCCGTGCGCCACCACGTCGGCCACC
Found at i:6113531 original size:30 final size:30
Alignment explanation
Indices: 6113497--6113579 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
6113487 TTGTAAATAA
*
6113497 TATTTTAGTCATTTGAGTTTTTGTTTATT-T
1 TATTTTAGTCCTTTGAGTTTTTGTTT-TTGT
*
6113527 TA-TTTAGGTCCTTTGAGTTTCTGTTTTTGT
1 TATTTTA-GTCCTTTGAGTTTTTGTTTTTGT
* *
6113557 TATTTTTGTCCTTTAAGTTTTTG
1 TATTTTAGTCCTTTGAGTTTTTG
6113580 AAATTACTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 6 0.13
30 36 0.80
31 3 0.07
ACGTcount: A:0.13, C:0.07, G:0.16, T:0.64
Consensus pattern (30 bp):
TATTTTAGTCCTTTGAGTTTTTGTTTTTGT
Found at i:6114180 original size:9 final size:10
Alignment explanation
Indices: 6114155--6114185 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
6114145 TAATGGTGAC
6114155 TCTTTTTAAT
1 TCTTTTTAAT
6114165 TCTTTTTAAT
1 TCTTTTTAAT
*
6114175 TCTTTTCAAT
1 TCTTTTTAAT
6114185 T
1 T
6114186 TATTTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (10 bp):
TCTTTTTAAT
Found at i:6115237 original size:63 final size:61
Alignment explanation
Indices: 6115109--6115282 Score: 190
Period size: 63 Copynumber: 2.9 Consensus size: 61
6115099 TAACATGTTT
* * * *
6115109 GCTTTTTATTTGTTGCAACCTGCC-TTTTGTTACTCTATATGCTAGATTTATCATGTAATT
1 GCTTTTGATTTGTTGCAATCTGCCTTTTTGTTACTCTATGTGCTAGATTTATCATGTAATC
* * * * **
6115169 ACTTTTGATTTGTTGCAATCTACCTTTTGTTGTTACTGTATGTTCTAGATTTATCATGTGGTC
1 GCTTTTGATTTGTTGCAATCTGCC-TTT-TTGTTACTCTATGTGCTAGATTTATCATGTAATC
*** *
6115232 GCTTTTGATCCATTGCACTCTGCCTTTTT-TTACTCTATGTGCTAGATTTAT
1 GCTTTTGATTTGTTGCAATCTGCCTTTTTGTTACTCTATGTGCTAGATTTAT
6115283 AGTGTCATTT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
60 40 0.43
61 2 0.02
62 5 0.05
63 46 0.49
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (61 bp):
GCTTTTGATTTGTTGCAATCTGCCTTTTTGTTACTCTATGTGCTAGATTTATCATGTAATC
Found at i:6119196 original size:21 final size:21
Alignment explanation
Indices: 6119170--6119220 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
6119160 TCTTGGTTGC
6119170 GGAAGAATGTTGTTCAAAGCT
1 GGAAGAATGTTGTTCAAAGCT
* *
6119191 GGAAGAATGTTGTTGAGAGCT
1 GGAAGAATGTTGTTCAAAGCT
*
6119212 GGATGAATG
1 GGAAGAATG
6119221 AGGAAGTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.35, T:0.27
Consensus pattern (21 bp):
GGAAGAATGTTGTTCAAAGCT
Found at i:6125778 original size:2 final size:2
Alignment explanation
Indices: 6125773--6125805 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6125763 TTTTTACGGA
6125773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6125806 CTCGAACTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6131799 original size:22 final size:20
Alignment explanation
Indices: 6131753--6131801 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
6131743 AAACTTTTTT
*
6131753 TATTTAATATAAATATTATA
1 TATTTAAAATAAATATTATA
6131773 T-TTTAAAAGTAAATATTATA
1 TATTTAAAA-TAAATATTATA
6131793 TAATTTAAA
1 T-ATTTAAA
6131802 TTCACATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 6 0.24
20 13 0.52
22 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATTTAAAATAAATATTATA
Found at i:6134821 original size:3 final size:3
Alignment explanation
Indices: 6134808--6134869 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
6134798 AAAAAATGTA
* * **
6134808 AAT ATT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAGT GTT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
*
6134854 AAT AA- ATT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
6134870 ATGAGAACCC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
2 1 0.02
3 45 0.96
4 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:6134864 original size:24 final size:24
Alignment explanation
Indices: 6134808--6134869 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
6134798 AAAAAATGTA
6134808 AATATTAATAATAATAGTAATAAT
1 AATATTAATAATAATAGTAATAAT
*
6134832 AATAATAATAATAAGT-GTTAATAAT
1 AATATTAATAATAA-TAG-TAATAAT
6134857 AA-ATTAATAATAA
1 AATATTAATAATAA
6134870 ATGAGAACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 24 0.71
25 10 0.29
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (24 bp):
AATATTAATAATAATAGTAATAAT
Found at i:6135366 original size:139 final size:139
Alignment explanation
Indices: 6135033--6135594 Score: 756
Period size: 139 Copynumber: 4.1 Consensus size: 139
6135023 ATTTTGAAGA
* * * *
6135033 GATAATTTGGTGACAACACGGTTCCTACGTGATGAGGAAGTC-GGATTGTCTAAGGATGACACTA
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGAAAGTCTGG-TTATCTGAGGATGACACTA
* * * * * *
6135097 CTCCTACGTGATGAGGAGATCT-G--GGTGGACGATATTATTCCTATGTGATGAGGATGTCTAGC
65 CTCCTACGTGATGAGGAGATCTAGTCGGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGC
6135159 CATCTTTAGG
130 CATCTTTAGG
* *
6135169 GATAATTTGGGAGACAACACGGTTCCTACGCGATGAGAAAGTCTGGTTATCTGAGGATGACACTG
1 GATAATTT-GGAGACAACACGGTTCCTACGTGATGAGAAAGTCTGGTTATCTGAGGATGACACTA
* *
6135234 CTCCTACTTGATGAGGAGATCTAGTCAGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGC
65 CTCCTACGTGATGAGGAGATCTAGTCGGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGC
6135299 CATCTTTAGG
130 CATCTTTAGG
* * * * *
6135309 GATAATTTGGAGATAACACGGTTCCTACGTGATAAGAAAGTTTGGTTATCTGAGGATGACGCTTC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGAAAGTCTGGTTATCTGAGGATGACACTAC
* * * * *
6135374 TCCTACGTGATGAGGAGATCTAGTTGGTGGATGTCATTGTTCCTACGTGATGAGAACATCTAGCC
66 TCCTACGTGATGAGGAGATCTAGTCGGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGCC
6135439 ATCTTTAGG
131 ATCTTTAGG
* * * * * **
6135448 GATAATTTGGAGACAACACAGTTCATACGTGATGAGGAAGTCTAGTTATCTGAGGATAACGTTAC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGAAAGTCTGGTTATCTGAGGATGACACTAC
* * *
6135513 TCCTACGTGATGTGGAGATCTGGTCGGT-AGATGACATTGTTCCTATGTGATGAGGACGTCTAGC
66 TCCTACGTGATGAGGAGATCTAGTCGGTGA-ATGACATTGTTCCTACGTGATGAGGACGTCTAGC
6135577 CATCTTTAGG
130 CATCTTTAGG
6135587 GATAATTT
1 GATAATTT
6135595 ATTTCAAGAG
Statistics
Matches: 375, Mismatches: 45, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
136 8 0.02
137 68 0.18
138 3 0.01
139 246 0.66
140 50 0.13
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (139 bp):
GATAATTTGGAGACAACACGGTTCCTACGTGATGAGAAAGTCTGGTTATCTGAGGATGACACTAC
TCCTACGTGATGAGGAGATCTAGTCGGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGCC
ATCTTTAGG
Found at i:6135709 original size:65 final size:65
Alignment explanation
Indices: 6135596--6135807 Score: 334
Period size: 65 Copynumber: 3.3 Consensus size: 65
6135586 GGATAATTTA
* * * * * * *
6135596 TTTCAAGAGAAATTGTCTCAAGCGAAACAAAATTTGTTTCAAGGGAAACAATCTCAAAGTTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
* *
6135661 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTCCGAGAGAAACAATCTCAAAATTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
6135726 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
*
6135791 TTTCAAGAGAAAATGTC
1 TTTCAAGAGAAACTGTC
6135808 CCAAACCAGA
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 135 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (65 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
Found at i:6135716 original size:36 final size:36
Alignment explanation
Indices: 6135659--6135782 Score: 118
Period size: 36 Copynumber: 3.6 Consensus size: 36
6135649 TCAAAGTTTA
**
6135659 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAACACT
1 TGTTTCAAGAGAAACAATCTCAAGAGAGACAACACT
* * ***
6135695 TGTTCCGAGAGAAACAATCTC-A-A-A-A-TTTA--
1 TGTTTCAAGAGAAACAATCTCAAGAGAGACAACACT
**
6135724 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAACACT
1 TGTTTCAAGAGAAACAATCTCAAGAGAGACAACACT
6135760 TGTTTCAAGAGAAACAATCTCAA
1 TGTTTCAAGAGAAACAATCTCAA
6135783 AATTTATGTT
Statistics
Matches: 65, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
29 17 0.26
30 1 0.02
31 2 0.03
32 2 0.03
33 2 0.03
34 2 0.03
35 1 0.02
36 38 0.58
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (36 bp):
TGTTTCAAGAGAAACAATCTCAAGAGAGACAACACT
Found at i:6135737 original size:29 final size:29
Alignment explanation
Indices: 6135702--6135802 Score: 94
Period size: 29 Copynumber: 3.2 Consensus size: 29
6135692 ACTTGTTCCG
6135702 AGAGAAACAATCTCAAAATTTATGTTTCA
1 AGAGAAACAATCTCAAAATTTATGTTTCA
** ***
6135731 AGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCA
1 AGAGAAACAATCTC-A-A-A-A-TTTA--TGTTTCA
6135767 AGAGAAACAATCTCAAAATTTATGTTTCA
1 AGAGAAACAATCTCAAAATTTATGTTTCA
6135796 AGAGAAA
1 AGAGAAA
6135803 ATGTCCCAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
29 26 0.47
30 1 0.02
31 2 0.04
32 2 0.04
33 2 0.04
34 2 0.04
35 1 0.02
36 19 0.35
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (29 bp):
AGAGAAACAATCTCAAAATTTATGTTTCA
Found at i:6135819 original size:65 final size:65
Alignment explanation
Indices: 6135596--6135847 Score: 326
Period size: 65 Copynumber: 3.9 Consensus size: 65
6135586 GGATAATTTA
* * * * * *
6135596 TTTCAAGAGAAATTGTCTCAAGCGAAACAAAATTTGTTTCAAGGGAAACAATCTCAAAGTTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
* * *
6135661 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTCCGAGAGAAACAATCTCAAAATTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
*
6135726 TTTCAAGAGAAACTGTCTCAAGAGAGACAACACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
* * * * ** * *
6135791 TTTCAAGAGAAAATGTCCCAA-ACCAGACAAAATTTGTTTTGAGAAAAACAATATCAA
1 TTTCAAGAGAAACTGTCTCAAGA-GAGACAAAACTTGTTTCAAGAGAAACAATCTCAA
6135848 TTTAGATAAA
Statistics
Matches: 166, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
64 1 0.01
65 165 0.99
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.26
Consensus pattern (65 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAATTTATG
Found at i:6135864 original size:101 final size:100
Alignment explanation
Indices: 6135759--6135995 Score: 271
Period size: 100 Copynumber: 2.4 Consensus size: 100
6135749 GAGACAACAC
* * *
6135759 TTGTTTCAAGAGAAACAATCTCAAAATTTATGTTTC-AAGAGAAAA-TGTCCCAAACCAGACAAA
1 TTGTTTCAAGTGAAACAATTTCAAAATTTATATTTCGAAGA-AAAATTGTCCCAAACCAGACAAA
* * *
6135822 ATTTGTTTTGAGAAAAACAATATCAATTTAGATAAATT
65 ATTTATTTTGA-AAAAA-AATATCAAGTAAGATAAATT
* * *** **
6135860 TTGTTTCAAGTGAAACAATTTCAAAATTTGTATTTCGAAGAAAAATTGTCTCAAGTGAGATGAAA
1 TTGTTTCAAGTGAAACAATTTCAAAATTTATATTTCGAAGAAAAATTGTCCCAAACCAGACAAAA
* * *
6135925 TTTATTTTTAAGAAAAATCTCAAGTAAGATAAATT
66 TTTATTTTGAAAAAAAATATCAAGTAAGATAAATT
* *
6135960 TTGTTTAAAGTGAAACAATTTCAAAATTTGTATTTC
1 TTGTTTCAAGTGAAACAATTTCAAAATTTATATTTC
6135996 TATAGGAAAC
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 52 0.44
101 40 0.34
102 25 0.21
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (100 bp):
TTGTTTCAAGTGAAACAATTTCAAAATTTATATTTCGAAGAAAAATTGTCCCAAACCAGACAAAA
TTTATTTTGAAAAAAAATATCAAGTAAGATAAATT
Found at i:6135971 original size:100 final size:100
Alignment explanation
Indices: 6135851--6136042 Score: 314
Period size: 100 Copynumber: 1.9 Consensus size: 100
6135841 ATATCAATTT
* *
6135851 AGATAAATTTTGTTTCAAGTGAAACAATTTCAAAATTTGTATTTCGA-AGAAAAATTGTCTCAAG
1 AGATAAATTTTGTTTAAAGTGAAACAATTTCAAAATTTGTATTTCGATAG-AAAACTGTCTCAAG
* *
6135915 TGAGATGAAATTTATTTTTAAGAAAAATCTCAAGTA
65 TGAGACGAAATTTATTTATAAGAAAAATCTCAAGTA
* *
6135951 AGATAAATTTTGTTTAAAGTGAAACAATTTCAAAATTTGTATTTCTATAGGAAACTGTCTCAAGT
1 AGATAAATTTTGTTTAAAGTGAAACAATTTCAAAATTTGTATTTCGATAGAAAACTGTCTCAAGT
6136016 GAGACGAAATTTATTTATAAGAAAAAT
66 GAGACGAAATTTATTTATAAGAAAAAT
6136043 AATCTCAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
100 83 0.98
101 2 0.02
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (100 bp):
AGATAAATTTTGTTTAAAGTGAAACAATTTCAAAATTTGTATTTCGATAGAAAACTGTCTCAAGT
GAGACGAAATTTATTTATAAGAAAAATCTCAAGTA
Found at i:6136115 original size:37 final size:37
Alignment explanation
Indices: 6136075--6136187 Score: 122
Period size: 36 Copynumber: 3.1 Consensus size: 37
6136065 AAGAAGACGG
* *
6136075 TCTCAAGTGAGACAAAATTTGTTTTTAAGAAAAACTG
1 TCTCAAGTGAGAAAAAATTTGTTTTTAAGAAAAACTA
* * * *
6136112 TCTCAGGCGAGAAAAAATTTCTTTTTAAG-AAAACAA
1 TCTCAAGTGAGAAAAAATTTGTTTTTAAGAAAAACTA
** * *
6136148 TCTCAAGTGAGATTAATTTTG-TTTCAAGAAAAACTA
1 TCTCAAGTGAGAAAAAATTTGTTTTTAAGAAAAACTA
6136184 TCTC
1 TCTC
6136188 TAGCGTGACG
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
35 6 0.10
36 30 0.49
37 25 0.41
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (37 bp):
TCTCAAGTGAGAAAAAATTTGTTTTTAAGAAAAACTA
Found at i:6136152 original size:36 final size:37
Alignment explanation
Indices: 6136083--6136152 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
6136073 GGTCTCAAGT
* * **
6136083 GAGACAAAATTTGTTTTTAAGAAAAACTGTCTCAGGC
1 GAGAAAAAATTTCTTTTTAAGAAAAACAATCTCAGGC
6136120 GAGAAAAAATTTCTTTTTAAG-AAAACAATCTCA
1 GAGAAAAAATTTCTTTTTAAGAAAAACAATCTCA
6136153 AGTGAGATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 10 0.34
37 19 0.66
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (37 bp):
GAGAAAAAATTTCTTTTTAAGAAAAACAATCTCAGGC
Found at i:6139202 original size:12 final size:12
Alignment explanation
Indices: 6139187--6139219 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6139177 TTCTCTTTGC
6139187 TTTTTTTCTCCT
1 TTTTTTTCTCCT
*
6139199 TTTTTTTCT-TT
1 TTTTTTTCTCCT
6139210 TTTTTTTCTC
1 TTTTTTTCTC
6139220 TATACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTTTCTCCT
Found at i:6139208 original size:25 final size:25
Alignment explanation
Indices: 6139171--6139249 Score: 76
Period size: 25 Copynumber: 3.1 Consensus size: 25
6139161 TTCTTCTTCT
6139171 TTTTTCTTCTCTTTGCTTTTTTTCTCC
1 TTTTT-TT-TCTTTGCTTTTTTTCTCC
6139198 TTTTTTTTCTTT--TTTTTTTCT-C
1 TTTTTTTTCTTTGCTTTTTTTCTCC
*
6139220 TATACTTTTTTCTTTGCTCTTTTT-TCC
1 T-T--TTTTTTCTTTGCTTTTTTTCTCC
6139247 TTT
1 TTT
6139250 ACTTTTCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
22 2 0.04
23 10 0.22
24 1 0.02
25 15 0.33
26 4 0.09
27 13 0.29
ACGTcount: A:0.03, C:0.20, G:0.03, T:0.75
Consensus pattern (25 bp):
TTTTTTTTCTTTGCTTTTTTTCTCC
Found at i:6139214 original size:10 final size:10
Alignment explanation
Indices: 6139164--6139215 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
6139154 AATATCTTTC
*
6139164 TTCTTCTTTT
1 TTCTTTTTTT
* *
6139174 TTCTTCTCTT
1 TTCTTTTTTT
*
6139184 TGCTTTTTTT
1 TTCTTTTTTT
* *
6139194 CTCCTTTTTT
1 TTCTTTTTTT
6139204 TTCTTTTTTT
1 TTCTTTTTTT
6139214 TT
1 TT
6139216 TCTCTATACT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:6139252 original size:27 final size:27
Alignment explanation
Indices: 6139180--6139266 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
6139170 TTTTTTCTTC
*
6139180 TCTTTGCTTTTTTTCTCCTT--TTTTT
1 TCTTTGCTTTTTTTCTCTTTACTTTTT
*
6139205 TCTTT--TTTTTTTCTCTATACTTTTT
1 TCTTTGCTTTTTTTCTCTTTACTTTTT
*
6139230 TCTTTGCTCTTTTTTC-CTTTACTTTTC
1 TCTTTGCT-TTTTTTCTCTTTACTTTTT
*
6139257 TCTCTGCTTT
1 TCTTTGCTTT
6139267 GATTTAATCT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
23 11 0.21
25 15 0.29
26 2 0.04
27 17 0.33
28 7 0.13
ACGTcount: A:0.03, C:0.22, G:0.03, T:0.71
Consensus pattern (27 bp):
TCTTTGCTTTTTTTCTCTTTACTTTTT
Found at i:6139255 original size:25 final size:24
Alignment explanation
Indices: 6139180--6139266 Score: 63
Period size: 25 Copynumber: 3.4 Consensus size: 24
6139170 TTTTTTCTTC
*
6139180 TCTTTGCTTTTTTTCTCCTTT-TTTT
1 TCTTTGC-TTTTTT-TCCTTTACTTT
*
6139205 TCTTT--TTTTTTTCTCTATACTTTTT
1 TCTTTGCTTTTTTTC-CTTTAC--TTT
6139230 TCTTTGCTCTTTTTTCCTTTACTTT
1 TCTTTGCT-TTTTTTCCTTTACTTT
6139255 TCTCTCTGCTTT
1 TCT-T-TGCTTT
6139267 GATTTAATCT
Statistics
Matches: 50, Mismatches: 3, Indels: 17
0.71 0.04 0.24
Matches are distributed among these distances:
21 2 0.04
22 9 0.18
25 19 0.38
26 3 0.06
27 10 0.20
28 7 0.14
ACGTcount: A:0.03, C:0.22, G:0.03, T:0.71
Consensus pattern (24 bp):
TCTTTGCTTTTTTTCCTTTACTTT
Found at i:6143932 original size:15 final size:15
Alignment explanation
Indices: 6143892--6143935 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6143882 CTCTCATTTT
*
6143892 TTCTTTTTGTCTCTG
1 TTCTTTTTCTCTCTG
*
6143907 TT-TTTTCTCTCTGTG
1 TTCTTTT-TCTCTCTG
6143922 TTCTTTTTCTCTCT
1 TTCTTTTTCTCTCT
6143936 TCGAAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.00, C:0.23, G:0.09, T:0.68
Consensus pattern (15 bp):
TTCTTTTTCTCTCTG
Found at i:6144579 original size:3 final size:3
Alignment explanation
Indices: 6144565--6144635 Score: 70
Period size: 3 Copynumber: 22.7 Consensus size: 3
6144555 ATAAAATGTA
* * *
6144565 AAT AAT ATT AAT AAT AAT AAT AAT AGT AAT AAT AAT CAT AAT AAT AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
**
6144614 GTT AAT AAT GAATT AAT AAT AA
1 AAT AAT AAT -AA-T AAT AAT AA
6144636 ATGAGAACCC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
3 49 0.89
4 5 0.09
5 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:6146314 original size:25 final size:25
Alignment explanation
Indices: 6146286--6146333 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6146276 ATATCCTCGG
* * *
6146286 CTTCTATCTTTTTTTCGACGATCGA
1 CTTCTATATTTCTTTCCACGATCGA
6146311 CTTCTATATTTCTTTCCACGATC
1 CTTCTATATTTCTTTCCACGATC
6146334 ATTGTAGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.17, C:0.27, G:0.08, T:0.48
Consensus pattern (25 bp):
CTTCTATATTTCTTTCCACGATCGA
Found at i:6148770 original size:29 final size:29
Alignment explanation
Indices: 6148705--6148777 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 29
6148695 CATATTATAT
* * *
6148705 AACTTTTTAAAATTATACTTTGATCCTAA
1 AACTTTTTAAATTTATACTTTAACCCTAA
*
6148734 AATTTTTTTAAATTTATACTTTAACCACT-A
1 AA-CTTTTTAAATTTATACTTTAACC-CTAA
*
6148764 AACTTTTAAAATTT
1 AACTTTTTAAATTT
6148778 TCATTTTGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 12 0.33
30 22 0.61
31 2 0.06
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.48
Consensus pattern (29 bp):
AACTTTTTAAATTTATACTTTAACCCTAA
Found at i:6149931 original size:24 final size:25
Alignment explanation
Indices: 6149903--6149950 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6149893 TAGAATATAG
6149903 TAAAATGAT-TTGATATTAAAAAAA
1 TAAAATGATATTGATATTAAAAAAA
* * *
6149927 TAAAATTATATTTATGTTAAAAAA
1 TAAAATGATATTGATATTAAAAAA
6149951 TAATATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
TAAAATGATATTGATATTAAAAAAA
Found at i:6152371 original size:30 final size:30
Alignment explanation
Indices: 6152335--6152402 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
6152325 TGATTCTCCA
6152335 AATGTTAAATTA-TATCTCCCTCGGTCTCAT
1 AATGTTAAATTATTA-CTCCCTCGGTCTCAT
6152365 AATGTTAAATTATTACTCCCTCGGTCTCAT
1 AATGTTAAATTATTACTCCCTCGGTCTCAT
6152395 AATGTTAA
1 AATGTTAA
6152403 TCTCTCACTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 35 0.95
31 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (30 bp):
AATGTTAAATTATTACTCCCTCGGTCTCAT
Found at i:6153398 original size:11 final size:11
Alignment explanation
Indices: 6153382--6153410 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
6153372 TTGAAACTCG
6153382 AGTTCGATTCA
1 AGTTCGATTCA
6153393 AGTTCGATTCA
1 AGTTCGATTCA
6153404 AGTTCGA
1 AGTTCGA
6153411 ATCTAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (11 bp):
AGTTCGATTCA
Found at i:6156949 original size:13 final size:13
Alignment explanation
Indices: 6156931--6156956 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6156921 GTGTAGGATA
6156931 TATCATGAAAAAT
1 TATCATGAAAAAT
6156944 TATCATGAAAAAT
1 TATCATGAAAAAT
6156957 ACAAAAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
TATCATGAAAAAT
Found at i:6157961 original size:15 final size:15
Alignment explanation
Indices: 6157941--6157971 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6157931 CGTTCTAACC
*
6157941 ATATCTTTTTATACA
1 ATATCTTTATATACA
6157956 ATATCTTTATATACA
1 ATATCTTTATATACA
6157971 A
1 A
6157972 AAATACTCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATCTTTATATACA
Found at i:6159681 original size:20 final size:21
Alignment explanation
Indices: 6159656--6159694 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6159646 GGCTGCTGGA
*
6159656 AACCGGTT-TAACCGGTTTTT
1 AACCGGTTCGAACCGGTTTTT
6159676 AACCGGTTCGAACCGGTTT
1 AACCGGTTCGAACCGGTTT
6159695 GACTGGTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (21 bp):
AACCGGTTCGAACCGGTTTTT
Found at i:6159713 original size:19 final size:19
Alignment explanation
Indices: 6159685--6159724 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6159675 TAACCGGTTC
* *
6159685 GAACCGGTTTGACTGGTCT
1 GAACCAGTTTGACCGGTCT
6159704 GAACCAGTTTGACCGGTCT
1 GAACCAGTTTGACCGGTCT
6159723 GA
1 GA
6159725 CCCGACCGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.28
Consensus pattern (19 bp):
GAACCAGTTTGACCGGTCT
Found at i:6159738 original size:5 final size:5
Alignment explanation
Indices: 6159723--6159767 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
6159713 TGACCGGTCT
*
6159723 GACCC GA-CC GACCC GACCC GACCATT GACCC GACCC GACCC GACC
1 GACCC GACCC GACCC GACCC GACC--C GACCC GACCC GACCC GACC
6159768 GTTGACCGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 4 0.11
5 27 0.77
7 4 0.11
ACGTcount: A:0.22, C:0.53, G:0.20, T:0.04
Consensus pattern (5 bp):
GACCC
Found at i:6159755 original size:22 final size:22
Alignment explanation
Indices: 6159730--6159774 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
6159720 TCTGACCCGA
6159730 CCGACCCGACCCGACCATTGAC
1 CCGACCCGACCCGACCATTGAC
*
6159752 CCGACCCGACCCGACCGTTGAC
1 CCGACCCGACCCGACCATTGAC
6159774 C
1 C
6159775 GTTGACTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.51, G:0.20, T:0.09
Consensus pattern (22 bp):
CCGACCCGACCCGACCATTGAC
Found at i:6166978 original size:19 final size:19
Alignment explanation
Indices: 6166951--6166989 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
6166941 GGCTGCTGGA
6166951 AACCAGTTTGACCGGTCTG
1 AACCAGTTTGACCGGTCTG
*
6166970 AACCGGTTTGACCGGTCTG
1 AACCAGTTTGACCGGTCTG
6166989 A
1 A
6166990 CCCGACCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (19 bp):
AACCAGTTTGACCGGTCTG
Found at i:6166998 original size:5 final size:5
Alignment explanation
Indices: 6166988--6167028 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
6166978 TGACCGGTCT
*
6166988 GACCC GACCC GACCC GACCGTT GACCC GACCC GACCC GACC
1 GACCC GACCC GACCC GACC--C GACCC GACCC GACCC GACC
6167029 ATTGACCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 28 0.88
7 4 0.12
ACGTcount: A:0.20, C:0.54, G:0.22, T:0.05
Consensus pattern (5 bp):
GACCC
Found at i:6167013 original size:22 final size:22
Alignment explanation
Indices: 6166987--6167035 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
6166977 TTGACCGGTC
*
6166987 TGACCCGACCCGACCCGACCGT
1 TGACCCGACCCGACCCGACCAT
6167009 TGACCCGACCCGACCCGACCAT
1 TGACCCGACCCGACCCGACCAT
6167031 TGACC
1 TGACC
6167036 GTTGACTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.49, G:0.20, T:0.10
Consensus pattern (22 bp):
TGACCCGACCCGACCCGACCAT
Found at i:6169114 original size:20 final size:21
Alignment explanation
Indices: 6169069--6169120 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
6169059 CGTTATGGTG
6169069 TATTTTTTA-TTAATAGTAATT
1 TATTTTTTATTTAATA-TAATT
* *
6169090 GATTTTTTATTTAAT-TATTT
1 TATTTTTTATTTAATATAATT
*
6169110 TATTTTATATT
1 TATTTTTTATT
6169121 CTTAATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 13 0.50
21 8 0.31
22 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TATTTTTTATTTAATATAATT
Found at i:6171036 original size:32 final size:32
Alignment explanation
Indices: 6171000--6171128 Score: 100
Period size: 32 Copynumber: 4.0 Consensus size: 32
6170990 CCAACCTAAA
* *
6171000 GGAGTATCTTGGAGCCTGAAAGCCTACCCAAG
1 GGAGTACCTTGGAGCCTTAAAGCCTACCCAAG
* * *
6171032 GGAGTACCTT-AAGGCTTAAGAGCCTACGCAAG
1 GGAGTACCTTGGAGCCTTAA-AGCCTACCCAAG
* * * *
6171064 AGAGTACCTAGGGGCCTTAGAGCCTACCCAAG
1 GGAGTACCTTGGAGCCTTAAAGCCTACCCAAG
** * * *
6171096 AAAATACCTT-GAGACTTCAGAGCCTACCCAAG
1 GGAGTACCTTGGAGCCTT-AAAGCCTACCCAAG
6171128 G
1 G
6171129 CCACCTTAGG
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
31 11 0.14
32 60 0.79
33 5 0.07
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (32 bp):
GGAGTACCTTGGAGCCTTAAAGCCTACCCAAG
Found at i:6175952 original size:14 final size:15
Alignment explanation
Indices: 6175933--6175961 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
6175923 AAATATGAAT
6175933 GAAATATTCA-GAGA
1 GAAATATTCATGAGA
6175947 GAAATATTCATGAGA
1 GAAATATTCATGAGA
6175962 TTGAGATGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (15 bp):
GAAATATTCATGAGA
Found at i:6178157 original size:18 final size:18
Alignment explanation
Indices: 6178113--6178153 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6178103 TTTAAATTAC
*
6178113 AATTTGTTTATAATTTAT
1 AATTTATTTATAATTTAT
*
6178131 AATTTATTTATTATTT-T
1 AATTTATTTATAATTTAT
6178148 AATTTA
1 AATTTA
6178154 ATTTTTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
AATTTATTTATAATTTAT
Found at i:6182137 original size:14 final size:14
Alignment explanation
Indices: 6182118--6182147 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6182108 ATGGTTTTGG
6182118 CCTTCCTCCTTCCC
1 CCTTCCTCCTTCCC
6182132 CCTTCCTCCTTCCC
1 CCTTCCTCCTTCCC
6182146 CC
1 CC
6182148 CATCATTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (14 bp):
CCTTCCTCCTTCCC
Found at i:6185814 original size:2 final size:2
Alignment explanation
Indices: 6185807--6185838 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6185797 TAAAAATAAT
6185807 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6185839 TAATAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6185859 original size:24 final size:26
Alignment explanation
Indices: 6185808--6185888 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 26
6185798 AAAAATAATT
* * * *
6185808 ATATATATATATATATATATATATATA
1 ATATAAATATATATTTA-ATTTAAATA
*
6185835 ATATTAATA-A-ATTTAATTTAAATA
1 ATATAAATATATATTTAATTTAAATA
6185859 A-A-AAATATATATTTAATTTAAATA
1 ATATAAATATATATTTAATTTAAATA
6185883 TATATA
1 -ATATA
6185889 TACCCGGCCC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 4 0.09
23 2 0.05
24 22 0.51
25 5 0.12
26 2 0.05
27 8 0.19
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATAAATATATATTTAATTTAAATA
Found at i:6185874 original size:19 final size:19
Alignment explanation
Indices: 6185850--6185889 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6185840 AATAAATTTA
6185850 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
6185869 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
6185888 AT
1 AT
6185890 ACCCGGCCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:6185951 original size:24 final size:24
Alignment explanation
Indices: 6185888--6185953 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 24
6185878 AAATATATAT
* * * * *
6185888 ATACCCGGCCCGATTCCCGGCCTA
1 ATACCCGACCCAATACCCGACCCA
6185912 ATA-CCGACCCAATACCCGACCCA
1 ATACCCGACCCAATACCCGACCCA
*
6185935 ATACCCGTCCCAATACCCG
1 ATACCCGACCCAATACCCG
6185954 TTTAAATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.26, C:0.47, G:0.14, T:0.14
Consensus pattern (24 bp):
ATACCCGACCCAATACCCGACCCA
Found at i:6185954 original size:12 final size:12
Alignment explanation
Indices: 6185888--6185953 Score: 71
Period size: 12 Copynumber: 5.6 Consensus size: 12
6185878 AAATATATAT
* *
6185888 ATACCCGGCCCG
1 ATACCCGACCCA
* * *
6185900 ATTCCCGGCCTA
1 ATACCCGACCCA
6185912 ATA-CCGACCCA
1 ATACCCGACCCA
6185923 ATACCCGACCCA
1 ATACCCGACCCA
*
6185935 ATACCCGTCCCA
1 ATACCCGACCCA
6185947 ATACCCG
1 ATACCCG
6185954 TTTAAATAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
11 9 0.20
12 37 0.80
ACGTcount: A:0.26, C:0.47, G:0.14, T:0.14
Consensus pattern (12 bp):
ATACCCGACCCA
Found at i:6189545 original size:17 final size:17
Alignment explanation
Indices: 6189520--6189558 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
6189510 TTAGGGTTAG
*
6189520 CAACGAAATCCAGGGTA
1 CAACTAAATCCAGGGTA
6189537 CAACTAAATCCAGGGTA
1 CAACTAAATCCAGGGTA
6189554 CAACT
1 CAACT
6189559 TTTCTAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (17 bp):
CAACTAAATCCAGGGTA
Found at i:6192667 original size:5 final size:5
Alignment explanation
Indices: 6192653--6192707 Score: 51
Period size: 5 Copynumber: 11.0 Consensus size: 5
6192643 CAAAAATTTC
* * *
6192653 AAATT TAATT AAATT AAATTTT AAATT --TTT GAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAA--TT AAATT AAATT AAATT AAATT AAATT AAATT
6192703 AAATT
1 AAATT
6192708 CAATAATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
3 2 0.05
5 34 0.83
7 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (5 bp):
AAATT
Found at i:6193287 original size:48 final size:48
Alignment explanation
Indices: 6193235--6193328 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
6193225 TATATTTTTA
* * *
6193235 AATAATTTTCATAATTTTCATATTTATTTATATAAAGTATAATATATT
1 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATATT
6193283 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATA
1 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATA
6193329 CAAATAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (48 bp):
AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATATT
Found at i:6194176 original size:13 final size:13
Alignment explanation
Indices: 6194158--6194192 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
6194148 TATGCCCCCT
6194158 GACCACTAAGTTA
1 GACCACTAAGTTA
6194171 GACCACTAAGTTA
1 GACCACTAAGTTA
*
6194184 CACCACTAA
1 GACCACTAA
6194193 TTTTTTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.20
Consensus pattern (13 bp):
GACCACTAAGTTA
Found at i:6196008 original size:2 final size:2
Alignment explanation
Indices: 6196003--6196166 Score: 118
Period size: 2 Copynumber: 85.5 Consensus size: 2
6195993 TTTTTATTAT
* * *
6196003 TA TA TA TA TA TA GTT TT TA TG TA TA GTA TA T- TA TA -A TA TA GTA
1 TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA
* * *
6196046 TA TA TA TA -A TA TA TT TT TA T- TA TA TA T- TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6196085 T- TA TA T- TA TA GTA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
6196125 TA TG T- TA TA GTG TA TT TA TA T- TA TA TA T- TA TA TA TA T- TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6196164 TA T
1 TA T
6196167 TTATTTTATA
Statistics
Matches: 132, Mismatches: 13, Indels: 34
0.74 0.07 0.19
Matches are distributed among these distances:
1 12 0.09
2 112 0.85
3 8 0.06
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (2 bp):
TA
Found at i:6196072 original size:39 final size:39
Alignment explanation
Indices: 6196003--6196166 Score: 160
Period size: 39 Copynumber: 4.1 Consensus size: 39
6195993 TTTTTATTAT
6196003 TATATAT-ATATAGTTTTTATGTATAGTATATTATAATATAGTA
1 TATATATAATATAGTTTTTA--TATA-TATATTAT-ATATA-TA
*
6196046 TATATATAATATA-TTTTTAT-TATATATTATATTTATA
1 TATATATAATATAGTTTTTATATATATATTATATATATA
* *
6196083 TAT-TATATTATAGTATATTATATATATA-TATATATATA
1 TATATATAATATAGT-TTTTATATATATATTATATATATA
**
6196121 TATATATGTTATAGTGTATTTATATTATATATTATATATAT-
1 TATATATAATATAGT-T-TTTATA-TATATATTATATATATA
6196162 TATAT
1 TATAT
6196167 TTATTTTATA
Statistics
Matches: 106, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
36 8 0.08
37 6 0.06
38 21 0.20
39 25 0.24
40 7 0.07
41 12 0.11
42 9 0.08
43 13 0.12
44 5 0.05
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (39 bp):
TATATATAATATAGTTTTTATATATATATTATATATATA
Found at i:6196145 original size:32 final size:30
Alignment explanation
Indices: 6196068--6196181 Score: 108
Period size: 32 Copynumber: 3.7 Consensus size: 30
6196058 ATTTTTATTA
*
6196068 TATATTATATTTATATATTATATTATAGTATAT
1 TATA-TATATTTATATATTATA-TATA-TATGT
*
6196101 TATATATATATATATA-TATATATATATGT
1 TATATATATTTATATATTATATATATATGT
* *
6196130 TATAGTGTATTTATAT-TATATATTATATATAT
1 TATA-TATATTTATATAT-TATA-TATATATGT
*
6196162 TATATTTATTT-TATATTATA
1 TATATATATTTATATATTATA
6196182 GAGATTCAGA
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
29 8 0.11
30 20 0.29
31 15 0.21
32 23 0.33
33 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (30 bp):
TATATATATTTATATATTATATATATATGT
Found at i:6196176 original size:16 final size:16
Alignment explanation
Indices: 6196061--6196181 Score: 75
Period size: 16 Copynumber: 7.0 Consensus size: 16
6196051 ATAATATATT
*
6196061 TTTATTATATATTATA
1 TTTATTTTATATTATA
6196077 TTTATATATTATATTATA
1 TTTAT-T-TTATATTATA
*
6196095 GTATATTATATATATATATA
1 -TTTATT-T-TATAT-TATA
* *
6196115 TATATATATATATGTTATA
1 T-T-TAT-TTTATATTATA
*
6196134 GTGTA-TTTATATTATA
1 -TTTATTTTATATTATA
*
6196150 TATTA-TATATATTATA
1 T-TTATTTTATATTATA
6196166 TTTATTTTATATTATA
1 TTTATTTTATATTATA
6196182 GAGATTCAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
15 4 0.05
16 37 0.45
17 1 0.01
18 14 0.17
19 14 0.17
20 9 0.11
21 3 0.04
22 1 0.01
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTATTTTATATTATA
Found at i:6196176 original size:18 final size:18
Alignment explanation
Indices: 6195999--6196181 Score: 123
Period size: 18 Copynumber: 9.9 Consensus size: 18
6195989 CGATTTTTTA
*
6195999 TTATTATATATATATAGTTT
1 TTATTATATATAT-TA-TAT
6196019 TTATGTATAGTATATTATAAT
1 TTAT-TATA-TATATTAT-AT
* *
6196040 ATAGTATATATATAATATAT
1 TTA-T-TATATATATTATAT
6196060 TT-TTATTATATATTATAT
1 TTATTA-TATATATTATAT
6196078 TTA-TATATTATATTATAGT
1 TTATTATA-TATATTATA-T
*
6196097 ATATTATATATA-TATAT
1 TTATTATATATATTATAT
* *
6196114 ATA-TATATATA-TATGT
1 TTATTATATATATTATAT
*
6196130 TATAGTGTATTTATATTATA-
1 T-TA-T-TATATATATTATAT
6196150 -TATTATATATATTATAT
1 TTATTATATATATTATAT
6196167 TTATT-T-TATATTATA
1 TTATTATATATATTATA
6196182 GAGATTCAGA
Statistics
Matches: 135, Mismatches: 12, Indels: 36
0.74 0.07 0.20
Matches are distributed among these distances:
16 33 0.24
17 12 0.09
18 35 0.26
19 7 0.05
20 19 0.14
21 19 0.14
22 10 0.07
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TTATTATATATATTATAT
Found at i:6200896 original size:190 final size:191
Alignment explanation
Indices: 6200525--6200907 Score: 725
Period size: 190 Copynumber: 2.0 Consensus size: 191
6200515 AACCAGGGAA
*
6200525 GTCGTAAGAGAGGAAAATGGCAGCACACTTGGAGGCCCCACACCAATAAGTTGACCGAGACTTTC
1 GTCGTAAGAGAGGAAAATGGCAGCACACTTGGAGGCCACACACCAATAAGTTGACCGAGACTTTC
6200590 GGGAGAACGCCTGAGACTGAACTATCCCGGGATTTTTGGCCCAACGACGACCTTAACAGAACGTG
66 GGGAGAACGCCTGAGACTGAACTATCCCGGGATTTTTGGCCCAACGACGACCTT-ACAGAACGTG
6200655 AACAAGTCAGGAAATAGCCCCGGAAAGATCGGTGATGACCCCGAGATCATCGAGACCCAAAC
130 AACAAGTCAGGAAATAGCCCCGGAAAGATCGGTGATGACCCCGAGATCATCGAGACCCAAAC
6200717 GTCGTAAAGAGAGGAAAATGGCAGCACACTTGGAGGCCACACACCAATAAGTTGACCGAGACTTT
1 GTCGT-AAGAGAGGAAAATGGCAGCACACTTGGAGGCCACACACCAATAAGTTGACCGAGACTTT
6200782 -GGGAGAACGCCTGAGACTGAACTATCCCGGGATTTTTGGCCCAACGACGACCTT-CAGAACGTG
65 CGGGAGAACGCCTGAGACTGAACTATCCCGGGATTTTTGGCCCAACGACGACCTTACAGAACGTG
6200845 AACAAGTCAGGAAATAGCCCCGGAAAGATCGGTGATGACCCCGAGATCATCGAGACCCAAAC
130 AACAAGTCAGGAAATAGCCCCGGAAAGATCGGTGATGACCCCGAGATCATCGAGACCCAAAC
6200907 G
1 G
6200908 ATCTACCGAA
Statistics
Matches: 189, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
190 72 0.38
192 59 0.31
193 58 0.31
ACGTcount: A:0.32, C:0.26, G:0.26, T:0.16
Consensus pattern (191 bp):
GTCGTAAGAGAGGAAAATGGCAGCACACTTGGAGGCCACACACCAATAAGTTGACCGAGACTTTC
GGGAGAACGCCTGAGACTGAACTATCCCGGGATTTTTGGCCCAACGACGACCTTACAGAACGTGA
ACAAGTCAGGAAATAGCCCCGGAAAGATCGGTGATGACCCCGAGATCATCGAGACCCAAAC
Found at i:6201095 original size:25 final size:25
Alignment explanation
Indices: 6201067--6201135 Score: 95
Period size: 26 Copynumber: 2.8 Consensus size: 25
6201057 CAAAGTCACA
*
6201067 AACCGAAAGCAAAAATAAGCAAAGC
1 AACCGAAAGCAAAAATAAACAAAGC
*
6201092 AACCGAAAGGAAAAAATAAACAAAGC
1 AACCGAAA-GCAAAAATAAACAAAGC
*
6201118 AATCGAAAGC-AAAATAAA
1 AACCGAAAGCAAAAATAAA
6201136 TAAATAAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 8 0.21
25 9 0.23
26 22 0.56
ACGTcount: A:0.64, C:0.16, G:0.14, T:0.06
Consensus pattern (25 bp):
AACCGAAAGCAAAAATAAACAAAGC
Found at i:6201115 original size:26 final size:26
Alignment explanation
Indices: 6201067--6201145 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
6201057 CAAAGTCACA
* *
6201067 AACCGAAA-GCAAAAATAAGCAAAGC
1 AACCGAAAGGAAAAAATAAACAAAGC
6201092 AACCGAAAGGAAAAAATAAACAAAGC
1 AACCGAAAGGAAAAAATAAACAAAGC
* * *
6201118 AATCGAAAGCAAAATAAATAAATAAAGC
1 AACCGAAAG-GAAA-AAATAAACAAAGC
6201146 TTGGGGCTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 8 0.17
26 23 0.50
27 3 0.07
28 12 0.26
ACGTcount: A:0.63, C:0.15, G:0.14, T:0.08
Consensus pattern (26 bp):
AACCGAAAGGAAAAAATAAACAAAGC
Found at i:6202222 original size:50 final size:49
Alignment explanation
Indices: 6202108--6202225 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 49
6202098 AAATCAAGAT
6202108 AAAAGAAAGAATAAA-AAAAGAATGAAGAAAATTTAAATTTTAAAAGAAA
1 AAAAGAAA-AATAAATAAAAGAATGAAGAAAATTTAAATTTTAAAAGAAA
* * * *
6202157 TAAATAAAAATAAATAAAA-AGTGAAGAAAATGTTAATTTTTAAAAAGAAA
1 AAAAGAAAAATAAATAAAAGAATGAAGAAAAT-TTAAATTTT-AAAAGAAA
6202207 AAAAGAAACAA-AAATAAAA
1 AAAAGAAA-AATAAATAAAA
6202226 TAAAAATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
48 17 0.29
49 18 0.31
50 22 0.37
51 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.10, T:0.19
Consensus pattern (49 bp):
AAAAGAAAAATAAATAAAAGAATGAAGAAAATTTAAATTTTAAAAGAAA
Found at i:6202930 original size:23 final size:23
Alignment explanation
Indices: 6202886--6202932 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
6202876 AACATATTAA
**
6202886 GTAGAGCTTATATAATGTAATAG
1 GTAGAGCTTATATAATAAAATAG
*
6202909 GTAGCGCTTATATAATAAAATAG
1 GTAGAGCTTATATAATAAAATAG
6202932 G
1 G
6202933 CATTTAACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (23 bp):
GTAGAGCTTATATAATAAAATAG
Found at i:6202992 original size:87 final size:87
Alignment explanation
Indices: 6202846--6203008 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
6202836 TATGTTATAT
*
6202846 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAAGTAGAGCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATCAAGTACAATAACATATTAAGTAGAGCTTATATAATGTAATAGGT
6202911 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* *
6202933 CATTTAACCAGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATCAAGTACAATAACATATTAAGTAGAGCTTATATAATGTAATAGGT
6202998 AGCGCTTATAT
66 AGCGCTTATAT
6203009 TGACCAATTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.32
Consensus pattern (87 bp):
CATTTAACCAGAAATATTATCAAGTACAATAACATATTAAGTAGAGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:6203437 original size:200 final size:198
Alignment explanation
Indices: 6203030--6203532 Score: 676
Period size: 200 Copynumber: 2.5 Consensus size: 198
6203020 CTAAGTAAAT
* **
6203030 CGATATATTTATACCGGTAACATTACAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
1 CGATATATTTATACAGGT-ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATG-T
* * *
6203095 TTTTA-GATCGATACAATTT--TAAATGTATCGACACTTTATGCATGCACCTCGTTGGGCATTCA
64 TTTGAGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGCATGCACCCCGTTGGGCATTCA
* * *
6203157 TTCTGGAAAAACGTATCGACACAAACTTAAAAAGTGTCGATACATTATTTAGACCTATTTTCTCA
128 TTATGGAAAAAAGTATCGACACAAACTTAAAAAGTGTCGATACATTATCTAGACCTATTTTCTCA
6203222 TAAAAC
193 TAAAAC
* * * * *
6203228 CGGTATATTTCTATCGGGTACATTGTAAATTTACCTATCACATTGTAATTATCGGTTTCGATG-T
1 CGATATATTTATA-CAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
* *
6203292 TTGAGGAATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGCACCCCGTTTGGCATTCAT
65 TTGAGG-ATCGATACTTTTAATAAATGTATCGACACTTTATGCATGCACCCCGTTGGGCATTCAT
* * ** *
6203357 TATGGACAAAAAGTATCGACACAAATTTAAATAGTGTCGATATTTTATGCT-GACCTATTTTCTT
129 TATGGA-AAAAAGTATCGACACAAACTTAAAAAGTGTCGATACATTAT-CTAGACCTATTTTCTC
6203421 ATAAAAC
192 ATAAAAC
* *
6203428 CGATATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTT
1 CGATATATTTATA-CAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
6203493 ATTG-GGATCGATACTTTTAATAAATGTATCGACACTTTAT
65 -TTGAGGATCGATACTTTTAATAAATGTATCGACACTTTAT
6203533 ATTCTAGACA
Statistics
Matches: 268, Mismatches: 28, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
196 4 0.01
197 4 0.01
198 59 0.22
199 50 0.19
200 144 0.54
201 4 0.01
202 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (198 bp):
CGATATATTTATACAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
TGAGGATCGATACTTTTAATAAATGTATCGACACTTTATGCATGCACCCCGTTGGGCATTCATTA
TGGAAAAAAGTATCGACACAAACTTAAAAAGTGTCGATACATTATCTAGACCTATTTTCTCATAA
AAC
Found at i:6207195 original size:150 final size:150
Alignment explanation
Indices: 6206922--6207223 Score: 457
Period size: 150 Copynumber: 2.0 Consensus size: 150
6206912 CATTCTGGAC
*
6206922 AAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTATGTTCACCTATTTTATCATAAAATC
1 AAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTAGGTTCACCTATTTTATCATAAAATC
*
6206987 GATATACTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATG-TT
66 GATATACTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTT
*
6207051 TTTGAGATCGATAC-TTTTTA
131 TTTGA-ATCGATACAATTTTA
* * *
6207071 AAAATGTATCGACACAAATTTAAATAGTGTCGATACATTAGGTAT-ACCTATTTTTCTCATAAAA
1 AAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTAGGT-TCACCTA-TTTTATCATAAAA
* * * * *
6207135 TCGGTATATTTATACCAGTTACATTGTATATTTACCTATTACATTATAATTTTCGGTTTCGATGT
64 TCGATATACTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGT
6207200 TTTTTGAATCGATACAATTTTA
129 TTTTTGAATCGATACAATTTTA
6207222 AA
1 AA
6207224 TGTATCATCA
Statistics
Matches: 138, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
149 45 0.33
150 79 0.57
151 14 0.10
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (150 bp):
AAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTAGGTTCACCTATTTTATCATAAAATC
GATATACTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTCGATGTTT
TTTGAATCGATACAATTTTA
Found at i:6207396 original size:349 final size:347
Alignment explanation
Indices: 6206719--6207434 Score: 931
Period size: 349 Copynumber: 2.1 Consensus size: 347
6206709 AAATTAGTAA
** *
6206719 TTTAAAAACCTATCGACACAAATTTAAAAGTGTCGATACACTATGTTAACCTATTTTCTCATAAA
1 TTTAAAAATGTATCGACACAAATTTAAAAGTGTCGATACACTAGGTTAACCTATTTTCTCATAAA
* *
6206784 ATCGGTATATTTATACCGATTACATTGTAAATTTACCTATTACATTATACTTTTTGATTTCGATG
66 ATCGGTATATTTATACCGATTACATTGTAAATTTACCTATTACATTATAATTTTCGATTTCGATG
* * ** * * **
6206849 TTTTTTGGATCAATTCTTTTTATAAATGTATCGACAATTTATGCGTGCACCCCGTTTTGCAATCA
131 TTTTTTGAATCAATACAATTTATAAATGTATCGACAATTTATACGTGAACCCCGTTGAGCAA-CA
** * * * *
6206914 TTCTGGACAAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTATGTTCACCTATTTTATC
195 GGCTAGACAAAAAGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTATTTGATC
*
6206979 ATAAAATCGATATACTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTT
260 ATAAAATCGATATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTATCGATTT
6207044 CGATG-TTTTTGAGATCGATACTT
325 CGATGTTTTTTG-GATCGATACTT
*
6207067 TTTAAAAATGTATCGACACAAATTTAAATAGTGTCGATACATTAGG-TATACCTATTTTTCTCAT
1 TTTAAAAATGTATCGACACAAATTTAAA-AGTGTCGATACACTAGGTTA-ACCTA-TTTTCTCAT
* *
6207131 AAAATCGGTATATTTATACC-AGTTACATTGTATATTTACCTATTACATTATAATTTTCGGTTTC
63 AAAATCGGTATATTTATACCGA-TTACATTGTAAATTTACCTATTACATTATAATTTTCGATTTC
* * * *
6207195 GATGTTTTTTGAATCGATACAATTT-TAAATGTATC-ATCACTTTTATACGTGAAGCTCGTTGAG
127 GATGTTTTTTGAATCAATACAATTTATAAATGTATCGA-CA-ATTTATACGTGAACCCCGTTGAG
* * * * * *
6207258 CAA-AGGCTCAGACAAAAAGTATTGACACAAATTTAAAAGGTGTTGATACTTTATGCTGACCTAT
190 CAACAGGCT-AGACAAAAAGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTAT
* * * * * *
6207322 TTGCTCATAAAATTGGTATATTTATACCGGTCACATTGTAAATTTACCTATTACTTTATAATTTT
254 TTGATCATAAAATCGATATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTAT
* *
6207387 TGGTTTCGATGTTTTTTGGATCGATACTT
319 CGATTTCGATGTTTTTTGGATCGATACTT
*
6207416 TTTATAAATGTATCGACAC
1 TTTAAAAATGTATCGACAC
6207435 TTTATGGGAA
Statistics
Matches: 318, Mismatches: 42, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
348 32 0.10
349 174 0.55
350 112 0.35
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (347 bp):
TTTAAAAATGTATCGACACAAATTTAAAAGTGTCGATACACTAGGTTAACCTATTTTCTCATAAA
ATCGGTATATTTATACCGATTACATTGTAAATTTACCTATTACATTATAATTTTCGATTTCGATG
TTTTTTGAATCAATACAATTTATAAATGTATCGACAATTTATACGTGAACCCCGTTGAGCAACAG
GCTAGACAAAAAGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTATTTGATCA
TAAAATCGATATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTATCGATTTC
GATGTTTTTTGGATCGATACTT
Found at i:6210876 original size:199 final size:199
Alignment explanation
Indices: 6210532--6211683 Score: 1496
Period size: 199 Copynumber: 5.7 Consensus size: 199
6210522 AACGGAATCA
* * * * *
6210532 ACACAAATTT-AACAATTGTCGATACTTTATGCT-GACCTATTTTCTCATAAAA-TCGATATATT
1 ACACAAATTTCAA-AAGTGTCGATACATTATG-TAGACCTATTCTCACATAAAACT-GGTATATT
* *
6210594 TATATCGGTTACATTA-AAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGAT
63 TATACCGGTTACATTACAAAA-TTACCTATTACATTATAATTAT-GGTTTCGATGTTTCTGGGAT
* * * * * * *
6210658 CAACACTTTTTAAAAATGTATCGACACTTAATGGGTGCACCCTTTT-GGCATTCCTTCTGGACAA
126 CGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGACAA
6210722 AAAGTATCG
191 AAAGTATCG
* * * * *
6210731 ACACAAATTTCATAAGTGTCGATACATTTTCTAGACCTATTCTCGCACAAAACTGGTATATTTAT
1 ACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTAT
* * *
6210796 ACCAGTTACATTGA-AAAATTATCTATTACATTATAATCATGAGTTTCGATGTTTCTGGGATCGA
66 ACCGGTTACATT-ACAAAATTACCTATTACATTATAATTATG-GTTTCGATGTTTCTGGGATCGA
6210860 TACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTTTTGGGCATTCATTCTGGACAA
129 TACTTTTTATAAATGTATCGACACTTTATGCGTGCACCA---TTTTGGGCATTCATTCTGGACAA
*
6210925 AATGTATCG
191 AAAGTATCG
* * *
6210934 ACACAAAATT-AGCAAGTGTTGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTA
1 ACACAAATTTCA-AAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTA
* * * * * * * *
6210998 TACCGGTTACATTACAAAATTTCTTAATACATTATAATTATGGGTTCGAT-TCTCTAGTATTGAT
65 TACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGTTTCGATGTTTCTGGGATCGAT
* * *
6211062 ACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTATGGACAAAAAG
130 ACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGACAAAAAG
6211127 TATCG
195 TATCG
* * * * *
6211132 ATACCAATTTCAAATGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGATATATTTAT
1 ACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTAT
** * *
6211197 AATGGTTACATTGA-AAAATTACGTATTACATTATAATCATGGGTTTCGATGTTTCTGGGATCGA
66 ACCGGTTACATT-ACAAAATTACCTATTACATTATAATTAT-GGTTTCGATGTTTCTGGGATCGA
*
6211261 TACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTTTTTGGGAATTCATTCTGGACA
129 TACTTTTTATAAATGTATCGACACTTTATGCGTGCACCA----TTTTGGGCATTCATTCTGGACA
*
6211326 AAATGTATCG
190 AAAAGTATCG
* * *
6211336 ACACAAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCATATAAAACTGGTATATTTAT
1 ACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTAT
* * * *
6211401 ATCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTCGATGTCTCTGGGATCGACA
66 ACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGTTTCGATGTTTCTGGGATCGATA
* *
6211466 CTTTTTATAAATGTATCAACACTTTATGCGTTCACCATTTTGGGCATTCATTCTGGACAAAAAGT
131 CTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGT
6211531 ATCG
196 ATCG
* * *
6211535 ACACCAATTTCAAAAGTATCGATACATTATGTAGACCCATTCTCACATAAAA-TCGGTATATTTA
1 ACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACT-GGTATATTTA
* * *
6211599 TACCAGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGA
65 TACCGGTTACATTACAAAATTACCTATTACATTATAATTAT-GGTTTCGATGTTTCTGGGATCGA
6211664 TACTTTTTATAAATGTATCG
129 TACTTTTTATAAATGTATCG
6211684 GCACATTTGT
Statistics
Matches: 830, Mismatches: 101, Indels: 43
0.85 0.10 0.04
Matches are distributed among these distances:
198 120 0.14
199 268 0.32
200 91 0.11
201 46 0.06
202 13 0.02
203 172 0.21
204 120 0.14
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (199 bp):
ACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACTGGTATATTTAT
ACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGTTTCGATGTTTCTGGGATCGATA
CTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGT
ATCG
Found at i:6212062 original size:19 final size:19
Alignment explanation
Indices: 6212038--6212086 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
6212028 TTACATTCAC
6212038 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
6212057 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
6212076 ATACAAAATTA
1 ATACAAAATTA
6212087 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:6213828 original size:21 final size:21
Alignment explanation
Indices: 6213803--6213846 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6213793 CCCCTTATGC
6213803 CTCTCAAGTGTCTCTTCGACT
1 CTCTCAAGTGTCTCTTCGACT
* *
6213824 CTCTCAAGTTTCTCTTTGACT
1 CTCTCAAGTGTCTCTTCGACT
6213845 CT
1 CT
6213847 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.32, G:0.11, T:0.43
Consensus pattern (21 bp):
CTCTCAAGTGTCTCTTCGACT
Found at i:6215634 original size:19 final size:19
Alignment explanation
Indices: 6215561--6215634 Score: 60
Period size: 19 Copynumber: 3.8 Consensus size: 19
6215551 CATTTATACA
* *
6215561 ACCTAAAATATCATTTTCT
1 ACCTATAATATTATTTTCT
* *
6215580 ACCTATAATATTATATAC-
1 ACCTATAATATTATTTTCT
** *
6215598 AGGTATCCATATTTATTTTCT
1 ACCTAT-AATA-TTATTTTCT
6215619 ACCTATAATATTATTT
1 ACCTATAATATTATTT
6215635 AATCGGTCCC
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
18 4 0.10
19 23 0.57
20 9 0.22
21 4 0.10
ACGTcount: A:0.35, C:0.16, G:0.03, T:0.46
Consensus pattern (19 bp):
ACCTATAATATTATTTTCT
Found at i:6216523 original size:182 final size:181
Alignment explanation
Indices: 6216218--6216707 Score: 725
Period size: 182 Copynumber: 2.7 Consensus size: 181
6216208 TACGCGTACT
* * *
6216218 TATTAAAGTATCGACACTTTTAATATA-TCAGGTAG-TGCTTTATCGGTTTTGTCCTTT-AGACC
1 TATTAAAGTATCGACACTTTCAATATATTC-GGTAGCT-CTTTACCGGTTTTGTCATTTGAGACC
*
6216280 GATTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACAC
64 GGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACAC
* * * *
6216345 TTTATAGGCGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTTGATACTTA
129 TTTATAGGCGCTAAAACTACTTCTATTTCAAATTCACAAAGTGTCGATACCTA
* * *
6216398 TATTAAAGTATCGACACTTTCAATATATTCGGTCGCTCTATACCGATTTTGTCATTTAGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATTCGGTAGCTCTTTACCGGTTTTGTCATTT-GAGACCG
* *
6216463 GTTTTGTCATATTTTTACCTATTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
65 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACACT
*
6216528 TTATAGGCGCTAAAACTGCTTCTATTTCAAATTCACAAAGTGTCGATACCTA
130 TTATAGGCGCTAAAACTACTTCTATTTCAAATTCACAAAGTGTCGATACCTA
* * * * *
6216580 TATTAAAGTATCGACATTTTCAATATATCCAGTAGCGCTTTACCGGTTTTGTCTTTTCGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATTCGGTAGCTCTTTACCGGTTTTGTCATTT-GAGACCG
* * *
6216645 GTTTTATCATATTTTTACCTGTTATATTGATGTGGATCGATACATTTTTATAAAGTATCGACA
65 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACA
6216708 TAAACCGACA
Statistics
Matches: 278, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
180 46 0.17
181 3 0.01
182 229 0.82
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (181 bp):
TATTAAAGTATCGACACTTTCAATATATTCGGTAGCTCTTTACCGGTTTTGTCATTTGAGACCGG
TTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACACTT
TATAGGCGCTAAAACTACTTCTATTTCAAATTCACAAAGTGTCGATACCTA
Found at i:6217347 original size:18 final size:17
Alignment explanation
Indices: 6217324--6217357 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6217314 TTGTTCTTAA
6217324 ATGTAGTATAAAGTTTTT
1 ATGTAGT-TAAAGTTTTT
*
6217342 ATGTAGTTAAGGTTTT
1 ATGTAGTTAAAGTTTT
6217358 GGTTTGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (17 bp):
ATGTAGTTAAAGTTTTT
Found at i:6217539 original size:5 final size:5
Alignment explanation
Indices: 6217529--6217554 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6217519 TAAATTTTTG
6217529 AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA A
6217555 TAATATTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTA
Found at i:6218129 original size:48 final size:48
Alignment explanation
Indices: 6218077--6218170 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
6218067 TATATTTTTA
* *
6218077 AATAATTTTCATAATTATCATATTTATTTATATAAAGTATAATATATT
1 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATATT
6218125 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATA
1 AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATA
6218171 CAAATAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (48 bp):
AATAATTTTCATAAGTATCATATTTATTTATATAAAATATAATATATT
Found at i:6218517 original size:15 final size:15
Alignment explanation
Indices: 6218497--6218526 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6218487 TTAAATTAGC
*
6218497 TTATAAAATGTTAAA
1 TTATAAAATATTAAA
6218512 TTATAAAATATTAAA
1 TTATAAAATATTAAA
6218527 CACATAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
TTATAAAATATTAAA
Found at i:6219143 original size:13 final size:14
Alignment explanation
Indices: 6219125--6219156 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
6219115 TAGTGTGAAA
6219125 ATATAAA-AAATAT
1 ATATAAACAAATAT
6219138 ATATAAACAAATAT
1 ATATAAACAAATAT
6219152 -TATAA
1 ATATAA
6219157 TTGATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
ATATAAACAAATAT
Found at i:6220233 original size:124 final size:124
Alignment explanation
Indices: 6220013--6220261 Score: 498
Period size: 124 Copynumber: 2.0 Consensus size: 124
6220003 AAACAACAAA
6220013 ACAAATTTAAGATGATTTTGCAATTGTTGATATCGATATGCATACAATTAACCAAGTAAAAGTGA
1 ACAAATTTAAGATGATTTTGCAATTGTTGATATCGATATGCATACAATTAACCAAGTAAAAGTGA
6220078 TAATACATAACTTTTCATCGACTTATTTTCTGGGTGAAGGTGGTTTTGGAAAAGTTCAT
66 TAATACATAACTTTTCATCGACTTATTTTCTGGGTGAAGGTGGTTTTGGAAAAGTTCAT
6220137 ACAAATTTAAGATGATTTTGCAATTGTTGATATCGATATGCATACAATTAACCAAGTAAAAGTGA
1 ACAAATTTAAGATGATTTTGCAATTGTTGATATCGATATGCATACAATTAACCAAGTAAAAGTGA
6220202 TAATACATAACTTTTCATCGACTTATTTTCTGGGTGAAGGTGGTTTTGGAAAAGTTCAT
66 TAATACATAACTTTTCATCGACTTATTTTCTGGGTGAAGGTGGTTTTGGAAAAGTTCAT
6220261 A
1 A
6220262 TTATGTACAT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 125 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (124 bp):
ACAAATTTAAGATGATTTTGCAATTGTTGATATCGATATGCATACAATTAACCAAGTAAAAGTGA
TAATACATAACTTTTCATCGACTTATTTTCTGGGTGAAGGTGGTTTTGGAAAAGTTCAT
Found at i:6220513 original size:2 final size:2
Alignment explanation
Indices: 6220508--6220689 Score: 71
Period size: 2 Copynumber: 99.5 Consensus size: 2
6220498 TCTTTTTTAT
* * * *
6220508 TA TA TA TA TA TA GTT TT TA TG TA TA GTA TA TT TA TA TA -A TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* *
6220551 T- TA TA TA TA T- TA TA -A TA T- TA T- TT TT TA T- TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
6220586 TA TA TT TA T- TA TA T- TA TA -A TA TA TT TA TA TT TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
6220624 TA TA -A TA TA TA TA -A TA TG T- TA TA GTG TT TT TA TA T- TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
6220663 TA T- TA TA TA TA TA T- TA TA T- TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6220690 TTATTTTATA
Statistics
Matches: 139, Mismatches: 18, Indels: 46
0.68 0.09 0.23
Matches are distributed among these distances:
1 20 0.14
2 115 0.83
3 4 0.03
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (2 bp):
TA
Found at i:6220591 original size:5 final size:5
Alignment explanation
Indices: 6220529--6220704 Score: 102
Period size: 5 Copynumber: 35.8 Consensus size: 5
6220519 AGTTTTTATG
* * *
6220529 TATAG TATAT T-TA- TATAA TATAT TATA- TATAT TATA- -ATAT TATTT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* *
6220574 TTTATT ATATAT TATAT T-TAT TATAT TATAA TATATT TATATT TATAT
1 TATA-T -TATAT TATAT TATAT TATAT TATAT TATA-T TATA-T TATAT
* * * * * * *
6220622 TATAT AATAT ATATAA TATGT TATAG TGT-T TTTA- TATTT TATAT TATAT
1 TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
6220671 ATATAT TATA- T-TAT TATATT TATTT TATAT TATA
1 -TATAT TATAT TATAT TATA-T TATAT TATAT TATA
6220705 GAGATTCAGA
Statistics
Matches: 132, Mismatches: 23, Indels: 32
0.71 0.12 0.17
Matches are distributed among these distances:
3 6 0.05
4 18 0.14
5 81 0.61
6 24 0.18
7 3 0.02
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATAT
Done.