Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008246.1 Hibiscus syriacus cultivar Beakdansim tig00110896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 500120
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 3
Found at i:367105 original size:20 final size:20
Alignment explanation
Indices: 367082--367212 Score: 226
Period size: 20 Copynumber: 6.5 Consensus size: 20
367072 CGATAGTCAG
* *
367082 ATTCGCGTTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
367102 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
367122 ATTCGTATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
367142 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
367162 ATTCGCATTGTGATTTACGT
1 ATTCGCATTGCGATTTACGT
367182 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
367202 ATTCGCATTGC
1 ATTCGCATTGC
367213 AAATTAGGAA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 105 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:367238 original size:21 final size:21
Alignment explanation
Indices: 367214--367256 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
367204 TCGCATTGCA
367214 AATTAGGAAAATCGCAATGTG
1 AATTAGGAAAATCGCAATGTG
*
367235 AATTTGGAAAATCGCAATGTG
1 AATTAGGAAAATCGCAATGTG
367256 A
1 A
367257 TAGTCAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (21 bp):
AATTAGGAAAATCGCAATGTG
Found at i:371858 original size:25 final size:24
Alignment explanation
Indices: 371830--371901 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
371820 TATAATTGAG
*
371830 TATATTATTGTAATAATAATATTAT
1 TATATTATT-TAATAATAATATTAA
* *
371855 TATATTATATTATTAAAAATATTAA
1 TATATTAT-TTAATAATAATATTAA
*
371880 TA-AATATTTTAATAATTAATAT
1 TATATTA-TTTAATAA-TAATAT
371902 ATTTTTATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 9 0.24
25 28 0.74
26 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (24 bp):
TATATTATTTAATAATAATATTAA
Found at i:373080 original size:12 final size:12
Alignment explanation
Indices: 373048--373081 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
373038 TTTAACCAAT
373048 TATATATATTTA
1 TATATATATTTA
*
373060 TATTTATATTTA
1 TATATATATTTA
*
373072 TATAAATATT
1 TATATATATT
373082 ATCAACAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATATATTTA
Found at i:374776 original size:3 final size:3
Alignment explanation
Indices: 374751--374795 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
374741 TAGTATTTTC
* *
374751 AAT AAGT AAA AAT AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
374796 ATTCTAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:375189 original size:20 final size:20
Alignment explanation
Indices: 375164--375236 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
375154 TTTTCCTAAT
375164 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
375184 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
375204 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
*
375224 TCGCAACGCGAAT
1 TCGCAATGCGAAT
375237 CTGACTATCG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:375246 original size:20 final size:20
Alignment explanation
Indices: 375223--375329 Score: 160
Period size: 20 Copynumber: 5.3 Consensus size: 20
375213 GAATATGTAA
*
375223 ATCGCAACGCGAATCTGACT
1 ATCGCAACGCGATTCTGACT
*
375243 ATCGCAACGCGATTATGACT
1 ATCGCAACGCGATTCTGACT
* *
375263 ATCGCAACGAGATTATGACT
1 ATCGCAACGCGATTCTGACT
* *
375283 ATCGCAACGAGATTCTAACT
1 ATCGCAACGCGATTCTGACT
375303 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
375323 ATCGCAA
1 ATCGCAA
375330 TACTGAATTT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 80 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:375247 original size:40 final size:40
Alignment explanation
Indices: 375164--375330 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
375154 TTTTCCTAAT
* * *
375164 TCGCAATGCGAATACGTAAATCGCAATGCGAATAC-GTA-AA
1 TCGCAATGCGAATATGTAAATCGCAACGCGAAT-CTG-ACTA
375204 TCGCAATGCGAATATGTAAATCGCAACGCGAATCTGACTA
1 TCGCAATGCGAATATGTAAATCGCAACGCGAATCTGACTA
* * * * * *
375244 TCGCAACGCGATTATG-ACTATCGCAACGAGATTATGACTA
1 TCGCAATGCGAATATGTA-AATCGCAACGCGAATCTGACTA
* *
375284 TCGCAA--CGAGAT-TCTAACTATCGCAACGCGATTCTGACTA
1 TCGCAATGCGA-ATATGTAA--ATCGCAACGCGAATCTGACTA
375324 TCGCAAT
1 TCGCAAT
375331 ACTGAATTTC
Statistics
Matches: 105, Mismatches: 14, Indels: 15
0.78 0.10 0.11
Matches are distributed among these distances:
38 4 0.04
39 5 0.05
40 96 0.91
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
TCGCAATGCGAATATGTAAATCGCAACGCGAATCTGACTA
Found at i:375267 original size:60 final size:60
Alignment explanation
Indices: 375203--375330 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 60
375193 GAATACGTAA
* * *
375203 ATCGCAATGCGAATATGTA-AATCGCAACGCGAATCTGACTATCGCAACGCGATTATGACT
1 ATCGCAATGAGAATATG-ACAATCGCAACGAGAATCTAACTATCGCAACGCGATTATGACT
* * * * *
375263 ATCGCAACGAGATTATGACTATCGCAACGAGATTCTAACTATCGCAACGCGATTCTGACT
1 ATCGCAATGAGAATATGACAATCGCAACGAGAATCTAACTATCGCAACGCGATTATGACT
375323 ATCGCAAT
1 ATCGCAAT
375331 ACTGAATTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
59 1 0.02
60 57 0.98
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (60 bp):
ATCGCAATGAGAATATGACAATCGCAACGAGAATCTAACTATCGCAACGCGATTATGACT
Found at i:376432 original size:15 final size:14
Alignment explanation
Indices: 376414--376449 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
376404 GAAGAAGAAG
376414 AAGAAGAAATCCCCA
1 AAGAA-AAATCCCCA
*
376429 AAGAAAAGTCCCCA
1 AAGAAAAATCCCCA
376443 AAGAAAA
1 AAGAAAA
376450 TACCACAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.58, C:0.22, G:0.14, T:0.06
Consensus pattern (14 bp):
AAGAAAAATCCCCA
Found at i:378680 original size:20 final size:20
Alignment explanation
Indices: 378655--378723 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
378645 CAATGCGGAA
378655 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAA-ATGACT
*
378675 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
378695 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
378715 ATCGCAACG
1 ATCGCAACG
378724 AGAGAATCGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 43 0.93
21 3 0.07
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:378745 original size:33 final size:33
Alignment explanation
Indices: 378636--378790 Score: 125
Period size: 34 Copynumber: 4.4 Consensus size: 33
378626 GACATTCATT
378636 TGACTATCGCAATGCG-GA-AATCGCAACGCGAATA
1 TGACTATCGCAA--CGAGAGAATCGCAACGCGAA-A
*
378670 TGACTATCGCAACACGGAAATGACTATCGCAACGCGGAAA
1 TGACTATCGC-A-AC-GAGA-GA--ATCGCAACGC-GAAA
*
378710 TGACTATCGCAACGAGAGAATCGCAATGCGAAA
1 TGACTATCGCAACGAGAGAATCGCAACGCGAAA
** * *
378743 TGAAAATTGCAACGAGAGAATCGCAATGCGAAAA
1 TGACTATCGCAACGAGAGAATCGCAACGCG-AAA
**
378777 TGAAAATCGCAACG
1 TGACTATCGCAACG
378791 CGAATTAGAT
Statistics
Matches: 104, Mismatches: 7, Indels: 20
0.79 0.05 0.15
Matches are distributed among these distances:
33 31 0.30
34 36 0.35
35 2 0.02
36 4 0.04
37 3 0.03
38 3 0.03
39 1 0.01
40 21 0.20
41 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (33 bp):
TGACTATCGCAACGAGAGAATCGCAACGCGAAA
Found at i:379554 original size:20 final size:20
Alignment explanation
Indices: 379529--379598 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
379519 ACTAAAACTT
379529 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
*
379549 AAAATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
379568 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
379588 ACTATCGCAAC
1 AAAATCGCAAC
379599 GCAAGAATCG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.40
20 27 0.60
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:379568 original size:19 final size:19
Alignment explanation
Indices: 379529--379632 Score: 119
Period size: 19 Copynumber: 5.6 Consensus size: 19
379519 ACTAAAACTT
*
379529 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
379549 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
379568 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
**
379588 ACTATCGCAACGC--AA-G
1 AAAATCGCAACGCGAAATG
379604 --AATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
379621 AAAATCGCAACG
1 AAAATCGCAACG
379633 ACAGAATCGC
Statistics
Matches: 72, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.14
16 3 0.04
17 3 0.04
19 28 0.39
20 28 0.39
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:379583 original size:39 final size:36
Alignment explanation
Indices: 379529--379632 Score: 133
Period size: 39 Copynumber: 2.9 Consensus size: 36
379519 ACTAAAACTT
379529 AAAATCGCAACACGAAAATGAAAATCGCAACGCGAAATG
1 AAAATCGCAACACGAAAATGAAAATCGCAACGC--AA-G
**
379568 AAAATCGCAACACGAAAATGACTATCGCAACGCAAG
1 AAAATCGCAACACGAAAATGAAAATCGCAACGCAAG
*
379604 --AATCGCAACGCG-AAATGAAAATCGCAACG
1 AAAATCGCAACACGAAAATGAAAATCGCAACG
379633 ACAGAATCGC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
33 15 0.25
34 11 0.18
36 1 0.02
37 2 0.03
39 31 0.52
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (36 bp):
AAAATCGCAACACGAAAATGAAAATCGCAACGCAAG
Found at i:380013 original size:22 final size:22
Alignment explanation
Indices: 379959--380024 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
379949 TGACCGTGAA
* * *
379959 TGATTTCGCCGGAGATAGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
379981 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
* *
380003 TGATTTTGTCGAAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
380025 GGATGTCGCC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.36, T:0.26
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:380244 original size:20 final size:20
Alignment explanation
Indices: 380221--380273 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
380211 CGATAGTCAG
*
380221 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
380241 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
380261 ATTCGCATTGCGA
1 ATTCGCATTGCGA
380274 ATTGGGAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.38
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:380296 original size:21 final size:21
Alignment explanation
Indices: 380270--380315 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
380260 TATTCGCATT
380270 GCGAATTGGGAAAATCACAAC
1 GCGAATTGGGAAAATCACAAC
* * *
380291 GCGAATTTGGAAAATCGCAAT
1 GCGAATTGGGAAAATCACAAC
380312 GCGA
1 GCGA
380316 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTGGGAAAATCACAAC
Found at i:381207 original size:21 final size:22
Alignment explanation
Indices: 381163--381208 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
381153 TTTGTTTAAA
**
381163 AAATAAAATTATTTTAAATTTT
1 AAATAAAATTATTTTAAACATT
*
381185 AAATATAATTA-TTTAAACATT
1 AAATAAAATTATTTTAAACATT
381206 AAA
1 AAA
381209 AAATTAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATAAAATTATTTTAAACATT
Found at i:381248 original size:21 final size:21
Alignment explanation
Indices: 381207--381248 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
381197 TTAAACATTA
*
381207 AAAAATTAAATACAAAATACT
1 AAAAATTAAAAACAAAATACT
* *
381228 AAAAATTAAAAATAAATTACT
1 AAAAATTAAAAACAAAATACT
381249 TAAAGTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAAATTAAAAACAAAATACT
Found at i:387430 original size:19 final size:18
Alignment explanation
Indices: 387393--387431 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
387383 CTGAGTCAGC
*
387393 AGCTGTTAGGAGTTTGTT
1 AGCTGTTAGGAGGTTGTT
*
387411 AGCTGTTAGTTAGGTTGTT
1 AGCTGTTAG-GAGGTTGTT
387430 AG
1 AG
387432 TGTGTATTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.18, C:0.05, G:0.33, T:0.44
Consensus pattern (18 bp):
AGCTGTTAGGAGGTTGTT
Found at i:387610 original size:2 final size:2
Alignment explanation
Indices: 387603--387627 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
387593 ATCAGACAAA
387603 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
387628 AAATGCATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:388522 original size:17 final size:17
Alignment explanation
Indices: 388500--388534 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
388490 GATAATTGAA
* *
388500 TTTTATTTTTTTTATTT
1 TTTTATTTATTGTATTT
388517 TTTTATTTATTGTATTT
1 TTTTATTTATTGTATTT
388534 T
1 T
388535 AAATATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTATTTATTGTATTT
Found at i:392339 original size:21 final size:22
Alignment explanation
Indices: 392313--392364 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
392303 AAAAAACTAT
392313 ATTTTATAAT-ATATAATAAAA
1 ATTTTATAATGATATAATAAAA
* * *
392334 ATTTTAGAATGATTTAATATAA
1 ATTTTATAATGATATAATAAAA
392356 ATTTTATAA
1 ATTTTATAA
392365 AAAAAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (22 bp):
ATTTTATAATGATATAATAAAA
Found at i:394497 original size:22 final size:23
Alignment explanation
Indices: 394472--394527 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
394462 TTTTATTTCG
* *
394472 TTTATTTTAATTTTTTTTAT-TA
1 TTTATTTTAATTTCTTTTATCCA
*
394494 TTTA-TTTGATTTCTTTTATCCA
1 TTTATTTTAATTTCTTTTATCCA
*
394516 TTTATTATAATT
1 TTTATTTTAATT
394528 CTAAACTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 13 0.48
22 9 0.33
23 5 0.19
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTATTTTAATTTCTTTTATCCA
Found at i:398552 original size:106 final size:106
Alignment explanation
Indices: 398309--399695 Score: 2107
Period size: 106 Copynumber: 13.3 Consensus size: 106
398299 CTCGAGAGTA
* ** * * * * *
398309 AATTTCAACTTCTCAATGAAGGATCTT-GAATCCAAGACAACACAAGCTCAACTTCATGACGAAG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTTCACGACGAAG
*** * * * *
398373 GGGTGGCTGATTGTCAACAAA-CATTTCTCAATTTCAGAACC
65 GGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
* *
398414 AAGTTCAACTTCACCA-CGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAG
1 AATTTCAACTTCA-CAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
* * *
398478 GGACCACTGGTTGTCAATAAATAACTTCCCAATTTCAGAGCC
65 GGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
398520 AATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
398585 GACCGCTGGTTGT---C-AATAA----ACAACTTC----CC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
* *
398614 AATTTCAACTTCGCAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
398679 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
398720 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
398785 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
398826 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
398891 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
398932 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
398997 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
399038 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
399103 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
399144 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
399209 GACCGCTGGTTGTCAACAAATAATTTCCTAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
399250 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
399315 GACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
399356 AATTTCAACTTCACAGCGAAGGATATTGTACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
399421 GACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
*
399462 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
399527 GACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
* * * * * *
399568 AATTTCGACTTCTCAGCGAAGGATCTTGGAC-CCAAGACAACACAAGCTCAATTTCACGACGAAG
1 AATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTTCACGACGAAG
* * * *
399632 GGGCGGCTGATTGTCAAC-AA-AATTT--C-A-TTCAGAGTC
65 GGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
399668 AATTTCAACTTCACAGCGAAGGATATTG
1 AATTTCAACTTCACAGCGAAGGATATTG
399696 ACATCGAAAC
Statistics
Matches: 1206, Mismatches: 59, Indels: 39
0.92 0.05 0.03
Matches are distributed among these distances:
94 77 0.06
97 1 0.00
98 11 0.01
100 33 0.03
101 1 0.00
102 11 0.01
104 4 0.00
105 69 0.06
106 999 0.83
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCC
Found at i:398584 original size:43 final size:43
Alignment explanation
Indices: 398523--398678 Score: 116
Period size: 43 Copynumber: 3.4 Consensus size: 43
398513 CAGAGCCAAT
*
398523 TTCAACTTCAC-AGTGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACGA-CGAAGGATATTGGACTCCAGACAACGCAAG
*** ** * * * *
398566 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAAT
1 TTCAACTTCACGACGAA-GGA-TATTGG-ACTC--CAGACAA---CGCAAG
* *
398617 TTCAACTTCGCAACGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACGACGAAGGATATTGGACTCCAGACAACGCAAG
398660 TTCAACTTCACGACGAAGG
1 TTCAACTTCACGACGAAGG
398679 GACCGCTGGT
Statistics
Matches: 81, Mismatches: 23, Indels: 18
0.66 0.19 0.15
Matches are distributed among these distances:
43 35 0.43
44 4 0.05
45 3 0.04
46 7 0.09
48 7 0.09
49 3 0.04
50 3 0.04
51 19 0.23
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (43 bp):
TTCAACTTCACGACGAAGGATATTGGACTCCAGACAACGCAAG
Found at i:401447 original size:21 final size:23
Alignment explanation
Indices: 401423--401477 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
401413 TTTTATTTCG
401423 TTTATTTTAATTT-TTTTAT-TA
1 TTTATTTTAATTTCTTTTATCTA
*
401444 TTTA-TTTGATTTCTTTTATCTA
1 TTTATTTTAATTTCTTTTATCTA
*
401466 TTTATTATAATT
1 TTTATTTTAATT
401478 CTAAACTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 7 0.25
21 10 0.36
22 6 0.21
23 5 0.18
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTATTTTAATTTCTTTTATCTA
Found at i:403941 original size:13 final size:14
Alignment explanation
Indices: 403918--403950 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
403908 TTTAAAATAA
*
403918 ATAATAATATTATT
1 ATAAAAATATTATT
403932 -TAAAAATATTATT
1 ATAAAAATATTATT
403945 ATAAAA
1 ATAAAA
403951 TAAACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAAAATATTATT
Found at i:406453 original size:31 final size:28
Alignment explanation
Indices: 406393--406455 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
406383 TGTATGATTT
* **
406393 TAAAAAAAATAAAATAAGATTTAGGTAC
1 TAAAAAAAATAAAATAAAATTTAAATAC
406421 TAAAATAAAATAAAAATAATAATTTAAATAC
1 TAAAA-AAAAT-AAAATAA-AATTTAAATAC
406452 TAAA
1 TAAA
406456 CATATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 5 0.17
29 5 0.17
30 7 0.24
31 12 0.41
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (28 bp):
TAAAAAAAATAAAATAAAATTTAAATAC
Found at i:410477 original size:2 final size:2
Alignment explanation
Indices: 410470--410497 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
410460 CTACACAACA
410470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
410498 GCTCATCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:411548 original size:37 final size:37
Alignment explanation
Indices: 411493--411623 Score: 244
Period size: 37 Copynumber: 3.5 Consensus size: 37
411483 TCATTAATCC
*
411493 TAAGGGTTGAAAGATATAATTTTTTATTTTATGCTCA
1 TAAGAGTTGAAAGATATAATTTTTTATTTTATGCTCA
411530 TAAGAGTTGAAAGATATAATTTTTTATTTTATGCTCA
1 TAAGAGTTGAAAGATATAATTTTTTATTTTATGCTCA
*
411567 TAAGAGTTGAAAGATATAATTTTTTATTTTTTGCTCA
1 TAAGAGTTGAAAGATATAATTTTTTATTTTATGCTCA
411604 TAAGAGTTGAAAGATATAAT
1 TAAGAGTTGAAAGATATAAT
411624 GAAGTGTACA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (37 bp):
TAAGAGTTGAAAGATATAATTTTTTATTTTATGCTCA
Found at i:414125 original size:13 final size:13
Alignment explanation
Indices: 414107--414135 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
414097 ATTGTTATCT
414107 TTTTTTAAGATCC
1 TTTTTTAAGATCC
414120 TTTTTTAAGATCC
1 TTTTTTAAGATCC
414133 TTT
1 TTT
414136 CTATATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (13 bp):
TTTTTTAAGATCC
Found at i:415200 original size:109 final size:109
Alignment explanation
Indices: 415009--415228 Score: 431
Period size: 109 Copynumber: 2.0 Consensus size: 109
414999 CACTCTTTTG
415009 AATCGCAAACCACGAAACTTGATCTCAGCCCGATCGCTTCTATTCGTCGTTCGACTGCTAGGTTT
1 AATCGCAAACCACGAAACTTGATCTCAGCCCGATCGCTTCTATTCGTCGTTCGACTGCTAGGTTT
415074 GTTGTCTTCTTCCTTTTTGATTAAACCATCAGAACACCCTCGGT
66 GTTGTCTTCTTCCTTTTTGATTAAACCATCAGAACACCCTCGGT
*
415118 AATCGCAAACCACGAAACTTGATCTCAGCCCGATCGCTTCTCTTCGTCGTTCGACTGCTAGGTTT
1 AATCGCAAACCACGAAACTTGATCTCAGCCCGATCGCTTCTATTCGTCGTTCGACTGCTAGGTTT
415183 GTTGTCTTCTTCCTTTTTGATTAAACCATCAGAACACCCTCGGT
66 GTTGTCTTCTTCCTTTTTGATTAAACCATCAGAACACCCTCGGT
415227 AA
1 AA
415229 GCATTATCGT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (109 bp):
AATCGCAAACCACGAAACTTGATCTCAGCCCGATCGCTTCTATTCGTCGTTCGACTGCTAGGTTT
GTTGTCTTCTTCCTTTTTGATTAAACCATCAGAACACCCTCGGT
Found at i:417034 original size:2 final size:2
Alignment explanation
Indices: 417027--417057 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
417017 AAATTATTAA
417027 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
417058 AACTACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:417555 original size:21 final size:20
Alignment explanation
Indices: 417510--417552 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
417500 CAAGTACAAT
* *
417510 AAATAATATTATTTATTATA
1 AAATAATAATAATTATTATA
*
417530 AAATAATAATAATTATTTTA
1 AAATAATAATAATTATTATA
417550 AAA
1 AAA
417553 ATATTAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATAATAATAATTATTATA
Found at i:417714 original size:36 final size:37
Alignment explanation
Indices: 417644--417714 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
417634 TTAAGACTAT
* *
417644 TTACTTAATTAAAATAAAATTTTATAATTCATATTTA
1 TTACTTAATTAAAATAAAATATTATAATTAATATTTA
*
417681 TTACTT-ATTAAAATAAGAATATTATTA-TAATATT
1 TTACTTAATTAAAATAA-AATATTATAATTAATATT
417715 AAAAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (37 bp):
TTACTTAATTAAAATAAAATATTATAATTAATATTTA
Found at i:417729 original size:15 final size:15
Alignment explanation
Indices: 417709--417744 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
417699 ATATTATTAT
417709 AATATTAAAAATAAA
1 AATATTAAAAATAAA
417724 AATATT-AAAATAAA
1 AATATTAAAAATAAA
417738 AATATTA
1 AATATTA
417745 TATTATATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AATATTAAAAATAAA
Found at i:417736 original size:26 final size:25
Alignment explanation
Indices: 417686--417736 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
417676 ATTTATTACT
* **
417686 TATTAAAATAAGAATATTATTATAA
1 TATTAAAATAAAAATATTAAAATAA
417711 TATTAAAAATAAAAATATTAAAATAA
1 TATT-AAAATAAAAATATTAAAATAA
417737 AAATATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (25 bp):
TATTAAAATAAAAATATTAAAATAA
Found at i:417826 original size:38 final size:38
Alignment explanation
Indices: 417784--417871 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
417774 TATATAAAAT
* *
417784 ATTAATAATCTAATAAT-ATTATATTATGAAATTATTAA
1 ATTAATAATATAAAAATAATTATATTAT-AAATTATTAA
* *
417822 ATTAATAA-ATAAAAATAATTTTATTATATATTATTAA
1 ATTAATAATATAAAAATAATTATATTATAAATTATTAA
*
417859 AATATATAATATA
1 ATTA-ATAATATA
417872 TATTAATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
37 18 0.43
38 21 0.50
39 3 0.07
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (38 bp):
ATTAATAATATAAAAATAATTATATTATAAATTATTAA
Found at i:418662 original size:151 final size:152
Alignment explanation
Indices: 418376--418680 Score: 603
Period size: 151 Copynumber: 2.0 Consensus size: 152
418366 CGTGTTTGTT
418376 ATTTATAGAATAACATTTGCTTTGGACAAAAGTTTGTAGAATTAATTGAGGATGATGTAATGATT
1 ATTTATAGAATAACATTTGCTTTGGACAAAAGTTTGTAGAATTAATTGAGGATGATGTAATGATT
418441 ATTGATAATGTTCATTCAAAAACAACCCTCTAAATTTGGTGTCGATTGTATTTACACCTACACAG
66 ATTGATAATGTTCATTCAAAAACAACCCTCTAAATTTGGTGTCGATTGTATTTACACCTACACAG
418506 AGTACGAGGTCGATGTATCCTC
131 AGTACGAGGTCGATGTATCCTC
418528 ATTTATAGAAT-ACATTTGCTTTGGACAAAAGTTTGTAGAATTAATTGAGGATGATGTAATGATT
1 ATTTATAGAATAACATTTGCTTTGGACAAAAGTTTGTAGAATTAATTGAGGATGATGTAATGATT
418592 ATTGATAATGTTCATTCAAAAACAACCCTCTAAATTTGGTGTCGATTGTATTTACACCTACACAG
66 ATTGATAATGTTCATTCAAAAACAACCCTCTAAATTTGGTGTCGATTGTATTTACACCTACACAG
418657 AGTACGAGGTCGATGTATCCTC
131 AGTACGAGGTCGATGTATCCTC
418679 AT
1 AT
418681 AACTTGTATA
Statistics
Matches: 153, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
151 142 0.93
152 11 0.07
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (152 bp):
ATTTATAGAATAACATTTGCTTTGGACAAAAGTTTGTAGAATTAATTGAGGATGATGTAATGATT
ATTGATAATGTTCATTCAAAAACAACCCTCTAAATTTGGTGTCGATTGTATTTACACCTACACAG
AGTACGAGGTCGATGTATCCTC
Found at i:418919 original size:17 final size:17
Alignment explanation
Indices: 418892--418924 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
418882 TTATTATATT
418892 AGAATTAAATTTAAAATA
1 AGAATTAAA-TTAAAATA
418910 AGAA-TAAATTAAAAT
1 AGAATTAAATTAAAAT
418925 TAAAATGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
AGAATTAAATTAAAATA
Found at i:419215 original size:14 final size:15
Alignment explanation
Indices: 419191--419219 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
419181 ATTATTAATA
419191 AATATTTTAATATTT
1 AATATTTTAATATTT
419206 AATA-TTTAATATTT
1 AATATTTTAATATTT
419220 TATTAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATATTTTAATATTT
Found at i:422959 original size:14 final size:15
Alignment explanation
Indices: 422940--422973 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
422930 ACATAGACCA
*
422940 AAATAAATCAAAA-T
1 AAATAAATAAAAAGT
422954 AAATAAATAAAAAGT
1 AAATAAATAAAAAGT
422969 AAATA
1 AAATA
422974 TAAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
AAATAAATAAAAAGT
Found at i:423732 original size:72 final size:72
Alignment explanation
Indices: 423615--423759 Score: 263
Period size: 72 Copynumber: 2.0 Consensus size: 72
423605 TGAAATAACA
* *
423615 TAAATGAATATGAAATATTATTCTTTGAATGGTCAATTGGACCCAAGAAGCGGATTCAAAATTCA
1 TAAATGAATATGAAAAATTATTCTTTGAATGGTCAATTGGACCCAAGAAGCAGATTCAAAATTCA
423680 CCCCTAG
66 CCCCTAG
*
423687 TAAATTAATATGAAAAATTATTCTTTGAATGGTCAATTGGACCCAAGAAGCAGATTCAAAATTCA
1 TAAATGAATATGAAAAATTATTCTTTGAATGGTCAATTGGACCCAAGAAGCAGATTCAAAATTCA
423752 CCCCTAG
66 CCCCTAG
423759 T
1 T
423760 CATAATCTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (72 bp):
TAAATGAATATGAAAAATTATTCTTTGAATGGTCAATTGGACCCAAGAAGCAGATTCAAAATTCA
CCCCTAG
Found at i:428978 original size:22 final size:21
Alignment explanation
Indices: 428930--428978 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
428920 TTAAAATATT
* *
428930 TTAAAAAAATTAAAAATTACA
1 TTAAAAAAATTAAAAATAAAA
428951 TATAAAAAATATTAAAAATAAAA
1 T-TAAAAAA-ATTAAAAATAAAA
428974 TTAAA
1 TTAAA
428979 TTACTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 11 0.46
23 12 0.50
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAAAAAAATTAAAAATAAAA
Found at i:429266 original size:2 final size:2
Alignment explanation
Indices: 429259--429285 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
429249 GAAACACTAT
429259 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
429286 TAAAAATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:436883 original size:13 final size:14
Alignment explanation
Indices: 436857--436885 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
436847 ATTTATCATT
436857 TTAAAACAACACAC
1 TTAAAACAACACAC
436871 TTAAAAC-ACACAC
1 TTAAAACAACACAC
436884 TT
1 TT
436886 CTCCCCCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
TTAAAACAACACAC
Found at i:443039 original size:22 final size:21
Alignment explanation
Indices: 442997--443036 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
442987 GAGTTTATTT
*
442997 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
443018 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
443037 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:449431 original size:2 final size:2
Alignment explanation
Indices: 449426--449497 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
449416 TAATACACAC
449426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
449468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
449498 TTATTGAGTG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:450115 original size:23 final size:23
Alignment explanation
Indices: 450072--450115 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
450062 AAATTGAGTT
*
450072 TTAAAATATTAATGGTTTTAAGG
1 TTAAAATATTAATGGTCTTAAGG
*
450095 TTAAAAT-TTATTAGGTCTTAA
1 TTAAAATATTAAT-GGTCTTAA
450116 TATTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (23 bp):
TTAAAATATTAATGGTCTTAAGG
Found at i:461712 original size:59 final size:59
Alignment explanation
Indices: 461637--461966 Score: 480
Period size: 59 Copynumber: 5.6 Consensus size: 59
461627 GATTACCAGA
** * ** *
461637 AGGGCACTTTATGTGCTAAAATGTCAAGGAATTCATACTAAGTGTATGAATTTTCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
*
461696 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGGGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * *
461755 AGGGCACTTTGTGTGCTAACATGAAAAGGAGTTCATACTAAGTATATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
** * ** *
461814 AGGGTTCTCCGTGTGCTAACATGAGAAACAATTCAAACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
*
461873 AGGGCACTTCGTGTGCTAACATGAGAATGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* *
461932 AGGGCACTTCGTATGCTAACATAAGAAGGAATTCA
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCA
461967 GATAACTCCG
Statistics
Matches: 240, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 240 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.31
Consensus pattern (59 bp):
AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
Found at i:471453 original size:3 final size:3
Alignment explanation
Indices: 471447--471494 Score: 51
Period size: 3 Copynumber: 15.0 Consensus size: 3
471437 ATTTTAAAAT
* *
471447 TTA TTA TTA TTA TTA TTA TTA ATA TATA TATA TTA TTTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA -TTA TTA TTA TTA
471495 CAAAGCCCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 29 0.74
4 10 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:476843 original size:15 final size:15
Alignment explanation
Indices: 476823--476854 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
476813 ATCAATACCT
476823 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
476838 TTTTGCATACATTCA
1 TTTTGCATACATGCA
476853 TT
1 TT
476855 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:484201 original size:6 final size:6
Alignment explanation
Indices: 484179--484250 Score: 82
Period size: 6 Copynumber: 12.5 Consensus size: 6
484169 ATTATGCTTG
*
484179 AAGAAA AA-AGA AA-AAA AAGAAA AAGAAA AAGAGAA AA-AAGA AAG-AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGA-AA AAGAA-A AAGAAA
484225 AA-AAA AAGAAA AAGAAA AAGAAA AAG
1 AAGAAA AAGAAA AAGAAA AAGAAA AAG
484251 GGGGGTCAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
5 16 0.28
6 38 0.66
7 4 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:484235 original size:35 final size:33
Alignment explanation
Indices: 484185--484249 Score: 112
Period size: 35 Copynumber: 1.9 Consensus size: 33
484175 CTTGAAGAAA
484185 AAAGAAAAAAAAGAAAAAGAAAAAGAGAAAAAAG
1 AAAGAAAAAAAAGAAAAAGAAAAAGA-AAAAAAG
484219 AAAGAAAAAAAAAGAAAAAGAAAAAGAAAAA
1 AAAG-AAAAAAAAGAAAAAGAAAAAGAAAAA
484250 GGGGGGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 8 0.27
35 22 0.73
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (33 bp):
AAAGAAAAAAAAGAAAAAGAAAAAGAAAAAAAG
Found at i:485423 original size:94 final size:94
Alignment explanation
Indices: 485106--485584 Score: 806
Period size: 94 Copynumber: 5.1 Consensus size: 94
485096 ACAAGTGCCG
485106 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCC-A
485171 AAAAACCAATCATT--A-TTGGAAGATGAA
65 AAAAACCAATCATTGAATTTGGAAGATGAA
485198 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCC-A
* *
485263 AAAAACCAATCTTTGAATTTAGAAGATGAA
65 AAAAACCAATCATTGAATTTGGAAGATGAA
*
485293 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATAAACCCCAA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
485358 AAAACCAATCATTGAATTTGGAAGATGAA
66 AAAACCAATCATTGAATTTGGAAGATGAA
*
485387 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
485452 AAAACCAATCATTGAATTTGGAAGATGAA
66 AAAACCAATCATTGAATTTGGAAGATGAA
* *
485481 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-GAA-ACCAC
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
* * *
485544 AGAACCAATCATTGGATATTGAAAGATGAA
66 AAAACCAATCATTGAAT-TTGGAAGATGAA
*
485574 TTTGCTCATAG
1 TGTGCTCATAG
485585 TAGAAATAAG
Statistics
Matches: 369, Mismatches: 14, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
92 95 0.26
93 24 0.07
94 177 0.48
95 73 0.20
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (94 bp):
TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
AAAACCAATCATTGAATTTGGAAGATGAA
Found at i:485632 original size:33 final size:33
Alignment explanation
Indices: 485595--485663 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
485585 TAGAAATAAG
485595 GAGACCCAATAGCATCTTCTAGAAGTGTTCTTT
1 GAGACCCAATAGCATCTTCTAGAAGTGTTCTTT
485628 GAGACCCAATAGCATCTTCTAGAAGTGTTCTTT
1 GAGACCCAATAGCATCTTCTAGAAGTGTTCTTT
485661 GAG
1 GAG
485664 TTATCTGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (33 bp):
GAGACCCAATAGCATCTTCTAGAAGTGTTCTTT
Found at i:486169 original size:95 final size:95
Alignment explanation
Indices: 486006--486203 Score: 387
Period size: 95 Copynumber: 2.1 Consensus size: 95
485996 TATTCTCCTC
486006 ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
1 ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
*
486071 AAAGATCACTTCATAATCAGATGAGTTGTT
66 AAAGATCACTTCATAATCAGATGAGTAGTT
486101 ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
1 ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
486166 AAAGATCACTTCATAATCAGATGAGTAGTT
66 AAAGATCACTTCATAATCAGATGAGTAGTT
486196 ATCAGAAT
1 ATCAGAAT
486204 TAACATGTTG
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 102 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (95 bp):
ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
AAAGATCACTTCATAATCAGATGAGTAGTT
Found at i:486701 original size:113 final size:113
Alignment explanation
Indices: 486537--487178 Score: 936
Period size: 113 Copynumber: 5.7 Consensus size: 113
486527 AGTGTCAGTT
*
486537 AAAGTTCATAATAAGAAGAACTCATCTGAAGAATGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
*
486602 TCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAG
66 TCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTGCCAGAG
486650 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
*
486715 TCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAG
66 TCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTGCCAGAG
*
486763 AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
* *
486828 TCAACCTTTTGCTCAAATCCATCATTTGATGGATCAGCTTTTTCCAG-G
66 TCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGC-TTTGCCAGAG
* * *
486876 TAGAGTTCATAATGAGAAGAACTCATTACTTGAAGGAGGAAGAAGAAATTCATAATGAGAAGAAT
1 -AAAGTTCATAATAAGAAGAACTCA-T-C-TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAAT
* * **
486941 TTGTTCAACC-TATGCTCAAATCCATCACTTGATGGATCAGCTTTTCCAGTT
62 TTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTGCCAGAG
* * * *
486992 AGAGTTCATAATGAGAAGAATTCATCTGAAGAAGGAAGAA-AAAGTTCATAATGAGAAGAACTTG
1 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAA-TTCATAATGAGAAGAATTTG
* * * * *
487056 TTTAACCTTTTGTTTAAATTCATCACTTGATGGATCA-ATTT-CCAGAG
65 TTCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTGCCAGAG
* * * * **
487103 AAAGTTCATAATAAGAAGAACTTATTTGAAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGT
1 AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
487167 TCAACCTTTTGC
66 TCAACCTTTTGC
487179 ATAATTCTAT
Statistics
Matches: 489, Mismatches: 31, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
110 37 0.08
111 35 0.07
112 41 0.08
113 239 0.49
114 31 0.06
115 32 0.07
116 30 0.06
117 44 0.09
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
AAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
TCAACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTGCCAGAG
Found at i:487527 original size:3 final size:3
Alignment explanation
Indices: 487521--487573 Score: 70
Period size: 3 Copynumber: 17.0 Consensus size: 3
487511 ATTTTAAAAT
*
487521 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA TATA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA
*
487568 ATA TTA
1 TTA TTA
487574 CAAAGCCCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:489726 original size:16 final size:16
Alignment explanation
Indices: 489705--489745 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
489695 ACACAATTGT
489705 AGGTTGTCTTTGTTTC
1 AGGTTGTCTTTGTTTC
489721 AGGTTGTCTTTGTTTC
1 AGGTTGTCTTTGTTTC
*
489737 AGGTAGTCT
1 AGGTTGTCT
489746 GTATAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.12, G:0.27, T:0.51
Consensus pattern (16 bp):
AGGTTGTCTTTGTTTC
Found at i:496541 original size:59 final size:59
Alignment explanation
Indices: 496478--496949 Score: 739
Period size: 59 Copynumber: 8.0 Consensus size: 59
496468 GATTACCAGA
* **
496478 AGGGCACTTCGTGTGCTAAAATGTCAAGGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
*
496537 AGGGCACTTCGTGTGCTAACATGAGAACGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
496596 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
*
496655 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAACTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* *
496714 AGGGCACTTTGTGTGCTAACATGAGAAGGAATTCATACGAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
496773 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * * * * **
496832 AGGGCACTTAGTGTACCAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTAT
1 AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
* * * * * *
496891 TGGACACCTT-GTGTGCCAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCATAT
1 AGGGCA-CTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
496950 GGAAAATAAT
Statistics
Matches: 388, Mismatches: 24, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
59 385 0.99
60 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (59 bp):
AGGGCACTTCGTGTGCTAACATGAGAAGGAATTCATACTAAGTGTATGAATTTCCATAT
Found at i:499825 original size:2 final size:2
Alignment explanation
Indices: 499820--499850 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
499810 TTTTTTTATG
499820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
499851 TCGAAACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.